####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 105 ( 420), selected 105 , name T0600TS328_1 # Molecule2: number of CA atoms 106 ( 873), selected 105 , name T0600.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0600TS328_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 65 17 - 81 4.40 24.76 LCS_AVERAGE: 56.29 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 77 - 121 1.62 34.02 LCS_AVERAGE: 34.12 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 81 - 121 0.99 34.20 LCS_AVERAGE: 23.32 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 105 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 17 G 17 17 32 65 9 24 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT I 18 I 18 17 32 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT G 19 G 19 17 32 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT S 20 S 20 17 32 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT W 21 W 21 17 32 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT V 22 V 22 17 32 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT L 23 L 23 17 32 65 9 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT H 24 H 24 17 32 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT M 25 M 25 17 32 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT E 26 E 26 17 32 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT S 27 S 27 17 32 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT G 28 G 28 17 32 65 11 25 32 40 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT R 29 R 29 17 32 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT L 30 L 30 17 32 65 9 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT E 31 E 31 17 32 65 3 18 30 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT W 32 W 32 17 32 65 9 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT S 33 S 33 17 32 65 5 23 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT Q 34 Q 34 4 32 65 3 3 5 36 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT A 35 A 35 10 32 65 6 23 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT V 36 V 36 10 32 65 6 13 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT H 37 H 37 10 32 65 6 8 23 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT D 38 D 38 10 32 65 6 8 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT I 39 I 39 10 32 65 6 8 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT F 40 F 40 10 32 65 6 8 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT G 41 G 41 10 32 65 4 16 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT T 42 T 42 10 32 65 5 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT D 43 D 43 10 32 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT S 44 S 44 10 32 65 4 7 23 37 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT A 45 A 45 9 32 65 4 7 9 14 25 41 50 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT T 46 T 46 9 32 65 4 5 9 12 17 25 45 54 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT F 47 F 47 5 32 65 3 4 5 10 16 28 46 54 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT D 48 D 48 5 32 65 3 6 14 26 39 45 50 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT A 49 A 49 3 19 65 3 3 6 9 18 36 50 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT T 50 T 50 5 27 65 3 5 8 22 35 45 50 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT E 51 E 51 5 27 65 3 5 5 26 43 52 53 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT D 52 D 52 5 27 65 3 16 22 33 44 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT A 53 A 53 5 27 65 3 5 6 17 36 50 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT Y 54 Y 54 13 27 65 5 17 28 39 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT F 55 F 55 13 27 65 10 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT Q 56 Q 56 13 27 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT R 57 R 57 17 27 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT V 58 V 58 18 27 65 8 24 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT H 59 H 59 18 27 65 8 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT P 60 P 60 18 27 65 9 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT D 61 D 61 18 27 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT D 62 D 62 18 27 65 11 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT R 63 R 63 18 27 65 9 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT A 64 A 64 18 27 65 5 10 28 40 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT R 65 R 65 18 27 65 10 24 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT V 66 V 66 18 27 65 10 25 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT R 67 R 67 18 27 65 10 17 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT R 68 R 68 18 27 65 10 16 27 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT E 69 E 69 18 27 65 10 18 29 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT L 70 L 70 18 27 65 10 23 32 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT D 71 D 71 18 27 65 10 16 23 37 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT R 72 R 72 18 27 65 10 14 22 34 45 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT H 73 H 73 18 27 65 10 17 28 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT V 74 V 74 18 27 65 10 16 28 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT L 75 L 75 18 27 65 6 15 28 40 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT G 76 G 76 12 27 65 3 4 16 22 43 50 54 55 58 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT D 77 D 77 10 45 65 3 9 15 20 26 31 36 41 46 55 57 62 64 64 66 66 67 67 68 70 LCS_GDT R 78 R 78 13 45 65 4 14 23 36 40 43 44 53 56 57 61 63 64 64 66 66 67 67 68 70 LCS_GDT P 79 P 79 27 45 65 4 20 34 40 43 43 44 44 44 45 45 45 46 54 57 64 67 67 68 70 LCS_GDT F 80 F 80 28 45 65 11 23 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 58 64 LCS_GDT D 81 D 81 41 45 65 11 29 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT V 82 V 82 41 45 51 9 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT E 83 E 83 41 45 51 9 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT Y 84 Y 84 41 45 51 9 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT R 85 R 85 41 45 51 11 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT I 86 I 86 41 45 51 4 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT V 87 V 87 41 45 51 4 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT R 88 R 88 41 45 51 5 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT P 89 P 89 41 45 51 5 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT D 90 D 90 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT G 91 G 91 41 45 51 5 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT Q 92 Q 92 41 45 51 5 21 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT V 93 V 93 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT R 94 R 94 41 45 51 15 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT E 95 E 95 41 45 51 13 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT L 96 L 96 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT L 97 L 97 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT E 98 E 98 41 45 51 11 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT R 99 R 99 41 45 51 11 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT N 100 N 100 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT H 101 H 101 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 55 LCS_GDT I 102 I 102 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 55 62 66 68 70 LCS_GDT Q 103 Q 103 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 69 LCS_GDT R 104 R 104 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 54 61 66 66 67 67 68 70 LCS_GDT Q 105 Q 105 41 45 51 10 29 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 56 70 LCS_GDT A 106 A 106 41 45 51 9 10 35 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT S 107 S 107 41 45 51 9 12 35 42 43 43 44 44 44 45 45 45 53 55 57 65 66 67 67 70 LCS_GDT G 108 G 108 41 45 51 9 10 22 42 43 43 44 44 44 53 60 63 64 64 66 66 67 67 68 70 LCS_GDT Q 109 Q 109 41 45 51 9 12 37 42 43 48 54 55 56 61 61 63 64 64 66 66 67 67 68 70 LCS_GDT V 110 V 110 41 45 51 9 10 37 42 43 43 44 44 44 45 52 56 59 62 66 66 67 67 68 70 LCS_GDT D 111 D 111 41 45 51 15 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 60 63 LCS_GDT H 112 H 112 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT L 113 L 113 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT W 114 W 114 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT G 115 G 115 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT T 116 T 116 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT V 117 V 117 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT I 118 I 118 41 45 51 16 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT D 119 D 119 41 45 51 12 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT M 120 M 120 41 45 51 11 31 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT T 121 T 121 41 45 51 11 22 37 42 43 43 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_AVERAGE LCS_A: 37.91 ( 23.32 34.12 56.29 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 31 37 42 47 52 54 57 59 61 61 63 64 64 66 66 67 67 68 70 GDT PERCENT_AT 15.09 29.25 34.91 39.62 44.34 49.06 50.94 53.77 55.66 57.55 57.55 59.43 60.38 60.38 62.26 62.26 63.21 63.21 64.15 66.04 GDT RMS_LOCAL 0.35 0.62 0.77 1.03 1.45 1.66 1.85 2.06 2.24 2.39 2.39 2.70 2.87 2.87 3.36 3.36 3.61 3.60 3.93 4.38 GDT RMS_ALL_AT 34.16 34.18 34.17 34.17 25.15 25.22 25.19 25.30 25.37 25.34 25.34 25.29 25.28 25.28 25.17 25.17 25.07 25.15 24.97 24.93 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 17 G 17 0.869 0 0.463 0.463 3.293 80.357 80.357 LGA I 18 I 18 0.507 4 0.105 0.105 0.674 95.238 47.619 LGA G 19 G 19 0.166 0 0.102 0.102 0.707 97.619 97.619 LGA S 20 S 20 0.267 2 0.031 0.031 0.332 100.000 66.667 LGA W 21 W 21 0.565 10 0.052 0.052 0.566 92.857 26.531 LGA V 22 V 22 0.542 3 0.117 0.117 0.597 92.857 53.061 LGA L 23 L 23 0.880 4 0.017 0.017 0.898 90.476 45.238 LGA H 24 H 24 0.923 6 0.060 0.060 1.116 85.952 34.381 LGA M 25 M 25 1.639 4 0.076 0.076 2.100 72.976 36.488 LGA E 26 E 26 1.242 5 0.081 0.081 1.568 79.286 35.238 LGA S 27 S 27 1.114 2 0.045 0.045 1.508 79.286 52.857 LGA G 28 G 28 1.755 0 0.130 0.130 1.755 77.143 77.143 LGA R 29 R 29 1.162 7 0.052 0.052 1.273 85.952 31.255 LGA L 30 L 30 0.983 4 0.101 0.101 1.527 88.452 44.226 LGA E 31 E 31 1.712 5 0.121 0.121 1.712 86.071 38.254 LGA W 32 W 32 0.636 10 0.216 0.216 1.227 88.214 25.204 LGA S 33 S 33 1.404 2 0.102 0.102 2.530 77.619 51.746 LGA Q 34 Q 34 2.563 5 0.322 0.322 3.967 61.667 27.407 LGA A 35 A 35 1.502 1 0.198 0.198 1.659 75.000 60.000 LGA V 36 V 36 2.042 3 0.093 0.093 2.204 66.786 38.163 LGA H 37 H 37 2.441 6 0.026 0.026 2.689 62.857 25.143 LGA D 38 D 38 2.105 4 0.019 0.019 2.228 64.762 32.381 LGA I 39 I 39 2.098 4 0.041 0.041 2.315 64.762 32.381 LGA F 40 F 40 2.059 7 0.102 0.102 2.059 70.833 25.758 LGA G 41 G 41 1.628 0 0.266 0.266 1.939 75.000 75.000 LGA T 42 T 42 1.022 3 0.099 0.099 1.474 83.690 47.823 LGA D 43 D 43 1.136 4 0.123 0.123 2.450 77.381 38.690 LGA S 44 S 44 2.321 2 0.070 0.070 3.784 57.738 38.492 LGA A 45 A 45 4.660 1 0.047 0.047 5.732 30.595 24.476 LGA T 46 T 46 5.163 3 0.128 0.128 5.711 26.310 15.034 LGA F 47 F 47 5.398 7 0.101 0.101 5.398 28.810 10.476 LGA D 48 D 48 3.975 4 0.619 0.619 5.487 34.524 17.262 LGA A 49 A 49 4.618 1 0.198 0.198 4.618 35.833 28.667 LGA T 50 T 50 4.401 3 0.655 0.655 4.401 41.905 23.946 LGA E 51 E 51 3.395 5 0.106 0.106 3.395 53.571 23.810 LGA D 52 D 52 3.326 4 0.093 0.093 3.420 53.690 26.845 LGA A 53 A 53 3.652 1 0.061 0.061 3.652 48.452 38.762 LGA Y 54 Y 54 2.278 8 0.069 0.069 2.278 64.762 21.587 LGA F 55 F 55 1.092 7 0.055 0.055 1.431 85.952 31.255 LGA Q 56 Q 56 1.036 5 0.110 0.110 1.108 83.690 37.196 LGA R 57 R 57 0.515 7 0.372 0.372 1.620 88.452 32.165 LGA V 58 V 58 0.962 3 0.081 0.081 0.972 90.476 51.701 LGA H 59 H 59 0.809 6 0.028 0.028 0.809 90.476 36.190 LGA P 60 P 60 0.864 3 0.032 0.032 0.875 90.476 51.701 LGA D 61 D 61 0.789 4 0.013 0.013 0.789 90.476 45.238 LGA D 62 D 62 0.379 4 0.076 0.076 0.548 97.619 48.810 LGA R 63 R 63 0.504 7 0.094 0.094 1.591 86.190 31.342 LGA A 64 A 64 2.041 1 0.143 0.143 2.712 69.048 55.238 LGA R 65 R 65 0.712 7 0.046 0.046 0.991 92.857 33.766 LGA V 66 V 66 0.346 3 0.050 0.050 0.495 100.000 57.143 LGA R 67 R 67 1.549 7 0.059 0.059 1.902 77.262 28.095 LGA R 68 R 68 2.264 7 0.033 0.033 2.541 64.881 23.593 LGA E 69 E 69 1.619 5 0.053 0.053 1.787 75.000 33.333 LGA L 70 L 70 0.887 4 0.110 0.110 2.171 79.643 39.821 LGA D 71 D 71 2.929 4 0.033 0.033 3.515 53.810 26.905 LGA R 72 R 72 3.481 7 0.022 0.022 3.584 48.333 17.576 LGA H 73 H 73 2.086 6 0.053 0.053 2.362 64.762 25.905 LGA V 74 V 74 2.321 3 0.101 0.101 2.513 62.857 35.918 LGA L 75 L 75 3.043 4 0.069 0.069 4.451 46.905 23.452 LGA G 76 G 76 4.563 0 0.675 0.675 5.382 34.524 34.524 LGA D 77 D 77 9.055 4 0.444 0.444 9.219 3.690 1.845 LGA R 78 R 78 6.260 7 0.167 0.167 9.408 8.690 3.160 LGA P 79 P 79 12.417 3 0.114 0.114 12.417 0.000 0.000 LGA F 80 F 80 15.427 7 0.062 0.062 19.696 0.000 0.000 LGA D 81 D 81 22.072 4 0.092 0.092 23.476 0.000 0.000 LGA V 82 V 82 27.912 3 0.055 0.055 31.503 0.000 0.000 LGA E 83 E 83 34.240 5 0.049 0.049 36.371 0.000 0.000 LGA Y 84 Y 84 40.774 8 0.039 0.039 43.552 0.000 0.000 LGA R 85 R 85 48.213 7 0.132 0.132 49.048 0.000 0.000 LGA I 86 I 86 51.076 4 0.078 0.078 55.290 0.000 0.000 LGA V 87 V 87 58.180 3 0.044 0.044 59.442 0.000 0.000 LGA R 88 R 88 62.699 7 0.034 0.034 65.346 0.000 0.000 LGA P 89 P 89 67.851 3 0.016 0.016 71.561 0.000 0.000 LGA D 90 D 90 73.241 4 0.108 0.108 74.313 0.000 0.000 LGA G 91 G 91 70.150 0 0.079 0.079 70.607 0.000 0.000 LGA Q 92 Q 92 66.724 5 0.103 0.103 68.237 0.000 0.000 LGA V 93 V 93 59.615 3 0.087 0.087 62.424 0.000 0.000 LGA R 94 R 94 54.420 7 0.056 0.056 55.995 0.000 0.000 LGA E 95 E 95 47.507 5 0.013 0.013 50.346 0.000 0.000 LGA L 96 L 96 42.609 4 0.047 0.047 44.162 0.000 0.000 LGA L 97 L 97 35.378 4 0.031 0.031 38.281 0.000 0.000 LGA E 98 E 98 32.101 5 0.056 0.056 32.954 0.000 0.000 LGA R 99 R 99 26.489 7 0.041 0.041 28.984 0.000 0.000 LGA N 100 N 100 22.388 4 0.028 0.028 23.300 0.000 0.000 LGA H 101 H 101 19.371 6 0.064 0.064 20.941 0.000 0.000 LGA I 102 I 102 15.084 4 0.026 0.026 16.154 0.000 0.000 LGA Q 103 Q 103 17.603 5 0.117 0.117 17.603 0.000 0.000 LGA R 104 R 104 13.652 7 0.024 0.024 17.731 0.000 0.000 LGA Q 105 Q 105 16.858 5 0.042 0.042 16.858 0.000 0.000 LGA A 106 A 106 19.255 1 0.140 0.140 19.255 0.000 0.000 LGA S 107 S 107 13.336 2 0.149 0.149 15.179 0.000 0.000 LGA G 108 G 108 9.716 0 0.108 0.108 11.421 7.976 7.976 LGA Q 109 Q 109 5.864 5 0.036 0.036 10.265 9.048 4.021 LGA V 110 V 110 10.300 3 0.029 0.029 12.634 1.786 1.020 LGA D 111 D 111 16.994 4 0.121 0.121 20.633 0.000 0.000 LGA H 112 H 112 21.561 6 0.027 0.027 21.561 0.000 0.000 LGA L 113 L 113 22.752 4 0.113 0.113 27.432 0.000 0.000 LGA W 114 W 114 28.150 10 0.109 0.109 28.179 0.000 0.000 LGA G 115 G 115 30.679 0 0.036 0.036 35.417 0.000 0.000 LGA T 116 T 116 35.843 3 0.055 0.055 36.017 0.000 0.000 LGA V 117 V 117 39.184 3 0.063 0.063 42.759 0.000 0.000 LGA I 118 I 118 41.749 4 0.052 0.052 43.225 0.000 0.000 LGA D 119 D 119 47.402 4 0.076 0.076 47.402 0.000 0.000 LGA M 120 M 120 44.790 4 0.197 0.197 46.838 0.000 0.000 LGA T 121 T 121 51.311 3 0.141 0.141 52.582 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 105 420 420 100.00 864 420 48.61 106 SUMMARY(RMSD_GDC): 19.512 19.501 19.501 41.077 22.027 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 105 106 4.0 57 2.06 46.226 45.019 2.636 LGA_LOCAL RMSD: 2.063 Number of atoms: 57 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 25.302 Number of assigned atoms: 105 Std_ASGN_ATOMS RMSD: 19.512 Standard rmsd on all 105 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.738853 * X + -0.343250 * Y + -0.579893 * Z + 53.193752 Y_new = -0.662814 * X + -0.525396 * Y + -0.533513 * Z + 141.096649 Z_new = -0.121545 * X + 0.778549 * Y + -0.615702 * Z + 60.624386 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.731202 0.121846 2.239922 [DEG: -41.8948 6.9813 128.3381 ] ZXZ: -0.827030 2.234072 -0.154867 [DEG: -47.3853 128.0029 -8.8732 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0600TS328_1 REMARK 2: T0600.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0600TS328_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 105 106 4.0 57 2.06 45.019 19.51 REMARK ---------------------------------------------------------- MOLECULE T0600TS328_1 PFRMAT TS TARGET T0600 MODEL 1 PARENT 3h9w_A ATOM 1 N GLY 17 11.322 85.452 35.336 1.00 3.00 ATOM 2 CA GLY 17 10.809 84.586 36.438 1.00 3.00 ATOM 3 C GLY 17 10.973 83.116 36.070 1.00 3.00 ATOM 4 O GLY 17 11.240 82.278 36.932 1.00 3.00 ATOM 5 N ILE 18 10.806 82.806 34.787 1.00 3.00 ATOM 6 CA ILE 18 10.954 81.433 34.313 1.00 3.00 ATOM 7 C ILE 18 12.381 80.977 34.582 1.00 3.00 ATOM 8 O ILE 18 13.322 81.761 34.493 1.00 3.00 ATOM 9 N GLY 19 12.540 79.706 34.921 1.00 3.00 ATOM 10 CA GLY 19 13.855 79.164 35.211 1.00 3.00 ATOM 11 C GLY 19 14.245 78.170 34.138 1.00 3.00 ATOM 12 O GLY 19 13.664 77.088 34.043 1.00 3.00 ATOM 13 N SER 20 15.232 78.526 33.305 1.00 3.00 ATOM 14 CA SER 20 15.683 77.636 32.238 1.00 3.00 ATOM 15 C SER 20 16.586 76.539 32.788 1.00 3.00 ATOM 16 O SER 20 17.293 76.746 33.776 1.00 3.00 ATOM 17 N TRP 21 16.542 75.371 32.159 1.00 3.00 ATOM 18 CA TRP 21 17.385 74.257 32.577 1.00 3.00 ATOM 19 C TRP 21 17.532 73.249 31.442 1.00 3.00 ATOM 20 O TRP 21 16.745 73.243 30.490 1.00 3.00 ATOM 21 N VAL 22 18.545 72.400 31.561 1.00 3.00 ATOM 22 CA VAL 22 18.824 71.367 30.580 1.00 3.00 ATOM 23 C VAL 22 19.466 70.200 31.306 1.00 3.00 ATOM 24 O VAL 22 20.268 70.397 32.227 1.00 3.00 ATOM 25 N LEU 23 19.101 68.994 30.891 1.00 3.00 ATOM 26 CA LEU 23 19.618 67.764 31.481 1.00 3.00 ATOM 27 C LEU 23 20.241 66.865 30.417 1.00 3.00 ATOM 28 O LEU 23 19.638 66.617 29.372 1.00 3.00 ATOM 29 N HIS 24 21.447 66.381 30.689 1.00 3.00 ATOM 30 CA HIS 24 22.135 65.473 29.775 1.00 3.00 ATOM 31 C HIS 24 21.490 64.116 30.028 1.00 3.00 ATOM 32 O HIS 24 21.597 63.572 31.121 1.00 3.00 ATOM 33 N MET 25 20.806 63.584 29.022 1.00 3.00 ATOM 34 CA MET 25 20.110 62.314 29.148 1.00 3.00 ATOM 35 C MET 25 20.996 61.141 29.565 1.00 3.00 ATOM 36 O MET 25 20.607 60.334 30.410 1.00 3.00 ATOM 37 N GLU 26 22.185 61.053 28.983 1.00 3.00 ATOM 38 CA GLU 26 23.102 59.957 29.290 1.00 3.00 ATOM 39 C GLU 26 23.533 59.912 30.752 1.00 3.00 ATOM 40 O GLU 26 23.467 58.865 31.391 1.00 3.00 ATOM 41 N SER 27 23.970 61.049 31.281 1.00 3.00 ATOM 42 CA SER 27 24.423 61.122 32.667 1.00 3.00 ATOM 43 C SER 27 23.314 61.552 33.626 1.00 3.00 ATOM 44 O SER 27 23.440 61.402 34.844 1.00 3.00 ATOM 45 N GLY 28 22.230 62.083 33.067 1.00 3.00 ATOM 46 CA GLY 28 21.102 62.565 33.856 1.00 3.00 ATOM 47 C GLY 28 21.551 63.683 34.789 1.00 3.00 ATOM 48 O GLY 28 21.017 63.849 35.884 1.00 3.00 ATOM 49 N ARG 29 22.539 64.450 34.347 1.00 3.00 ATOM 50 CA ARG 29 23.045 65.555 35.145 1.00 3.00 ATOM 51 C ARG 29 22.602 66.879 34.531 1.00 3.00 ATOM 52 O ARG 29 22.369 66.966 33.325 1.00 3.00 ATOM 53 N LEU 30 22.478 67.906 35.363 1.00 3.00 ATOM 54 CA LEU 30 22.080 69.225 34.887 1.00 3.00 ATOM 55 C LEU 30 21.969 70.289 35.973 1.00 3.00 ATOM 56 O LEU 30 21.958 69.960 37.161 1.00 3.00 ATOM 57 N GLU 31 21.907 71.550 35.549 1.00 3.00 ATOM 58 CA GLU 31 21.807 72.663 36.474 1.00 3.00 ATOM 59 C GLU 31 20.817 73.754 36.041 1.00 3.00 ATOM 60 O GLU 31 20.392 73.814 34.878 1.00 3.00 ATOM 61 N TRP 32 20.466 74.632 36.966 1.00 3.00 ATOM 62 CA TRP 32 19.490 75.667 36.667 1.00 3.00 ATOM 63 C TRP 32 20.186 76.968 36.874 1.00 3.00 ATOM 64 O TRP 32 21.195 77.010 37.566 1.00 3.00 ATOM 65 N SER 33 19.654 78.054 36.300 1.00 3.00 ATOM 66 CA SER 33 20.351 79.329 36.489 1.00 3.00 ATOM 67 C SER 33 19.365 80.476 36.436 1.00 3.00 ATOM 68 O SER 33 18.209 80.300 36.082 1.00 3.00 ATOM 69 N GLN 34 19.821 81.649 36.842 1.00 3.00 ATOM 70 CA GLN 34 19.056 82.865 36.792 1.00 3.00 ATOM 71 C GLN 34 17.771 82.924 37.614 1.00 3.00 ATOM 72 O GLN 34 16.833 83.600 37.213 1.00 3.00 ATOM 73 N ALA 35 17.718 82.265 38.767 1.00 3.00 ATOM 74 CA ALA 35 16.489 82.284 39.555 1.00 3.00 ATOM 75 C ALA 35 16.015 81.112 40.426 1.00 3.00 ATOM 76 O ALA 35 15.140 81.277 41.280 1.00 3.00 ATOM 77 N VAL 36 16.589 79.927 40.207 1.00 3.00 ATOM 78 CA VAL 36 16.197 78.747 40.981 1.00 3.00 ATOM 79 C VAL 36 16.568 78.922 42.452 1.00 3.00 ATOM 80 O VAL 36 15.939 78.337 43.343 1.00 3.00 ATOM 81 N HIS 37 17.586 79.738 42.707 1.00 3.00 ATOM 82 CA HIS 37 18.042 79.981 44.071 1.00 3.00 ATOM 83 C HIS 37 17.088 80.934 44.786 1.00 3.00 ATOM 84 O HIS 37 16.713 80.710 45.943 1.00 3.00 ATOM 85 N ASP 38 16.677 81.993 44.099 1.00 3.00 ATOM 86 CA ASP 38 15.752 82.942 44.703 1.00 3.00 ATOM 87 C ASP 38 14.417 82.254 44.971 1.00 3.00 ATOM 88 O ASP 38 13.775 82.505 45.991 1.00 3.00 ATOM 89 N ILE 39 14.008 81.376 44.055 1.00 3.00 ATOM 90 CA ILE 39 12.743 80.671 44.193 1.00 3.00 ATOM 91 C ILE 39 12.757 79.548 45.235 1.00 3.00 ATOM 92 O ILE 39 11.890 79.497 46.112 1.00 3.00 ATOM 93 N PHE 40 13.727 78.645 45.140 1.00 3.00 ATOM 94 CA PHE 40 13.786 77.512 46.071 1.00 3.00 ATOM 95 C PHE 40 14.864 77.555 47.157 1.00 3.00 ATOM 96 O PHE 40 14.982 76.620 47.956 1.00 3.00 ATOM 97 N GLY 41 15.652 78.627 47.179 1.00 3.00 ATOM 98 CA GLY 41 16.672 78.784 48.201 1.00 3.00 ATOM 99 C GLY 41 17.971 77.994 48.118 1.00 3.00 ATOM 100 O GLY 41 19.019 78.492 48.531 1.00 3.00 ATOM 101 N THR 42 17.929 76.770 47.608 1.00 3.00 ATOM 102 CA THR 42 19.152 75.979 47.525 1.00 3.00 ATOM 103 C THR 42 20.147 76.704 46.627 1.00 3.00 ATOM 104 O THR 42 19.753 77.365 45.671 1.00 3.00 ATOM 105 N ASP 43 21.452 76.601 46.930 1.00 3.00 ATOM 106 CA ASP 43 22.445 77.274 46.086 1.00 3.00 ATOM 107 C ASP 43 22.276 76.788 44.648 1.00 3.00 ATOM 108 O ASP 43 22.051 75.603 44.415 1.00 3.00 ATOM 109 N SER 44 22.372 77.701 43.691 1.00 3.00 ATOM 110 CA SER 44 22.231 77.334 42.292 1.00 3.00 ATOM 111 C SER 44 23.156 76.173 41.938 1.00 3.00 ATOM 112 O SER 44 22.760 75.233 41.245 1.00 3.00 ATOM 113 N ALA 45 24.386 76.227 42.436 1.00 3.00 ATOM 114 CA ALA 45 25.342 75.173 42.133 1.00 3.00 ATOM 115 C ALA 45 25.020 73.809 42.722 1.00 3.00 ATOM 116 O ALA 45 25.665 72.819 42.370 1.00 3.00 ATOM 117 N THR 46 24.027 73.749 43.609 1.00 3.00 ATOM 118 CA THR 46 23.639 72.494 44.256 1.00 3.00 ATOM 119 C THR 46 22.781 71.592 43.369 1.00 3.00 ATOM 120 O THR 46 22.586 70.414 43.670 1.00 3.00 ATOM 121 N PHE 47 22.252 72.147 42.287 1.00 3.00 ATOM 122 CA PHE 47 21.430 71.361 41.376 1.00 3.00 ATOM 123 C PHE 47 22.349 70.609 40.426 1.00 3.00 ATOM 124 O PHE 47 22.644 71.079 39.330 1.00 3.00 ATOM 125 N ASP 48 22.798 69.434 40.865 1.00 3.00 ATOM 126 CA ASP 48 23.722 68.601 40.096 1.00 3.00 ATOM 127 C ASP 48 23.085 67.595 39.140 1.00 3.00 ATOM 128 O ASP 48 23.563 67.419 38.019 1.00 3.00 ATOM 129 N ALA 49 22.022 66.925 39.575 1.00 3.00 ATOM 130 CA ALA 49 21.366 65.938 38.721 1.00 3.00 ATOM 131 C ALA 49 19.878 65.790 39.001 1.00 3.00 ATOM 132 O ALA 49 19.321 66.432 39.896 1.00 3.00 ATOM 133 N THR 50 19.251 64.904 38.237 1.00 3.00 ATOM 134 CA THR 50 17.830 64.630 38.380 1.00 3.00 ATOM 135 C THR 50 17.313 64.097 39.690 1.00 3.00 ATOM 136 O THR 50 16.232 64.438 40.141 1.00 3.00 ATOM 137 N GLU 51 18.115 63.193 40.293 1.00 3.00 ATOM 138 CA GLU 51 17.712 62.581 41.556 1.00 3.00 ATOM 139 C GLU 51 17.766 63.506 42.779 1.00 3.00 ATOM 140 O GLU 51 16.892 63.337 43.668 1.00 3.00 ATOM 141 N ASP 52 18.658 64.384 42.772 1.00 3.00 ATOM 142 CA ASP 52 18.770 65.387 43.961 1.00 3.00 ATOM 143 C ASP 52 17.989 66.657 43.846 1.00 3.00 ATOM 144 O ASP 52 17.134 66.939 44.662 1.00 3.00 ATOM 145 N ALA 53 18.275 67.384 42.805 1.00 9.00 ATOM 146 CA ALA 53 17.580 68.812 42.681 1.00 9.00 ATOM 147 C ALA 53 16.114 68.600 42.295 1.00 9.00 ATOM 148 O ALA 53 15.285 69.367 42.833 1.00 9.00 ATOM 149 N TYR 54 15.784 67.606 41.412 1.00 3.00 ATOM 150 CA TYR 54 14.392 67.468 41.002 1.00 3.00 ATOM 151 C TYR 54 13.549 66.482 41.741 1.00 3.00 ATOM 152 O TYR 54 12.439 66.913 42.319 1.00 3.00 ATOM 153 N PHE 55 13.982 65.279 41.995 1.00 3.00 ATOM 154 CA PHE 55 13.200 64.312 42.727 1.00 3.00 ATOM 155 C PHE 55 13.383 64.228 44.208 1.00 3.00 ATOM 156 O PHE 55 12.486 63.563 44.896 1.00 3.00 ATOM 157 N GLN 56 14.365 64.856 44.772 1.00 3.00 ATOM 158 CA GLN 56 14.580 64.823 46.226 1.00 3.00 ATOM 159 C GLN 56 13.892 66.077 46.758 1.00 3.00 ATOM 160 O GLN 56 13.173 66.027 47.752 1.00 3.00 ATOM 161 N ARG 57 14.111 67.197 46.080 1.00 3.00 ATOM 162 CA ARG 57 13.543 68.479 46.489 1.00 3.00 ATOM 163 C ARG 57 12.109 68.627 45.999 1.00 3.00 ATOM 164 O ARG 57 11.766 69.565 45.275 1.00 3.00 ATOM 165 N VAL 58 11.265 67.700 46.434 1.00 3.00 ATOM 166 CA VAL 58 9.877 67.671 46.019 1.00 3.00 ATOM 167 C VAL 58 9.007 67.111 47.142 1.00 3.00 ATOM 168 O VAL 58 9.478 66.347 47.984 1.00 3.00 ATOM 169 N HIS 59 7.739 67.501 47.148 1.00 3.00 ATOM 170 CA HIS 59 6.783 67.036 48.153 1.00 3.00 ATOM 171 C HIS 59 6.680 65.510 48.063 1.00 3.00 ATOM 172 O HIS 59 6.691 64.946 46.967 1.00 3.00 ATOM 173 N PRO 60 6.584 64.816 49.215 1.00 3.00 ATOM 174 CA PRO 60 6.486 63.352 49.215 1.00 3.00 ATOM 175 C PRO 60 5.336 62.749 48.406 1.00 3.00 ATOM 176 O PRO 60 5.497 61.693 47.798 1.00 3.00 ATOM 177 N ASP 61 4.183 63.410 48.389 1.00 3.00 ATOM 178 CA ASP 61 3.046 62.890 47.642 1.00 3.00 ATOM 179 C ASP 61 3.197 63.135 46.143 1.00 3.00 ATOM 180 O ASP 61 2.493 62.531 45.332 1.00 3.00 ATOM 181 N ASP 62 4.111 64.026 45.775 1.00 3.00 ATOM 182 CA ASP 62 4.340 64.312 44.368 1.00 3.00 ATOM 183 C ASP 62 5.459 63.427 43.839 1.00 3.00 ATOM 184 O ASP 62 5.440 63.006 42.677 1.00 3.00 ATOM 185 N ARG 63 6.432 63.124 44.690 1.00 3.00 ATOM 186 CA ARG 63 7.529 62.260 44.275 1.00 3.00 ATOM 187 C ARG 63 6.906 60.931 43.875 1.00 3.00 ATOM 188 O ARG 63 7.451 60.207 43.055 1.00 3.00 ATOM 189 N ALA 64 5.747 60.638 44.464 1.00 3.00 ATOM 190 CA ALA 64 5.010 59.397 44.216 1.00 3.00 ATOM 191 C ALA 64 4.502 59.206 42.787 1.00 3.00 ATOM 192 O ALA 64 4.067 58.108 42.427 1.00 3.00 ATOM 193 N ARG 65 4.558 60.252 41.965 1.00 3.00 ATOM 194 CA ARG 65 4.064 60.121 40.597 1.00 3.00 ATOM 195 C ARG 65 4.840 60.905 39.548 1.00 3.00 ATOM 196 O ARG 65 4.978 60.458 38.411 1.00 3.00 ATOM 197 N VAL 66 5.343 62.073 39.931 1.00 3.00 ATOM 198 CA VAL 66 6.076 62.931 39.002 1.00 3.00 ATOM 199 C VAL 66 7.315 62.274 38.399 1.00 3.00 ATOM 200 O VAL 66 7.536 62.336 37.190 1.00 3.00 ATOM 201 N ARG 67 8.126 61.649 39.240 1.00 3.00 ATOM 202 CA ARG 67 9.332 60.999 38.759 1.00 3.00 ATOM 203 C ARG 67 9.009 59.928 37.717 1.00 3.00 ATOM 204 O ARG 67 9.574 59.930 36.622 1.00 3.00 ATOM 205 N ARG 68 8.089 59.025 38.038 1.00 3.00 ATOM 206 CA ARG 68 7.725 57.962 37.099 1.00 3.00 ATOM 207 C ARG 68 7.129 58.506 35.804 1.00 3.00 ATOM 208 O ARG 68 7.434 58.015 34.717 1.00 3.00 ATOM 209 N GLU 69 6.272 59.512 35.926 1.00 3.00 ATOM 210 CA GLU 69 5.651 60.116 34.758 1.00 3.00 ATOM 211 C GLU 69 6.727 60.723 33.850 1.00 3.00 ATOM 212 O GLU 69 6.810 60.395 32.668 1.00 3.00 ATOM 213 N LEU 70 7.574 61.585 34.402 1.00 3.00 ATOM 214 CA LEU 70 8.608 62.215 33.584 1.00 3.00 ATOM 215 C LEU 70 9.567 61.218 32.942 1.00 3.00 ATOM 216 O LEU 70 9.963 61.384 31.789 1.00 3.00 ATOM 217 N ASP 71 9.939 60.183 33.685 1.00 3.00 ATOM 218 CA ASP 71 10.829 59.162 33.157 1.00 3.00 ATOM 219 C ASP 71 10.190 58.472 31.952 1.00 3.00 ATOM 220 O ASP 71 10.801 58.355 30.889 1.00 3.00 ATOM 221 N ARG 72 8.953 58.025 32.126 1.00 3.00 ATOM 222 CA ARG 72 8.225 57.338 31.064 1.00 3.00 ATOM 223 C ARG 72 8.085 58.194 29.808 1.00 3.00 ATOM 224 O ARG 72 8.328 57.723 28.699 1.00 3.00 ATOM 225 N HIS 73 7.689 59.451 29.978 1.00 3.00 ATOM 226 CA HIS 73 7.520 60.340 28.837 1.00 3.00 ATOM 227 C HIS 73 8.838 60.663 28.149 1.00 3.00 ATOM 228 O HIS 73 8.907 60.716 26.918 1.00 3.00 ATOM 229 N VAL 74 9.882 60.880 28.941 1.00 3.00 ATOM 230 CA VAL 74 11.199 61.188 28.393 1.00 3.00 ATOM 231 C VAL 74 11.735 60.022 27.561 1.00 3.00 ATOM 232 O VAL 74 12.203 60.216 26.439 1.00 3.00 ATOM 233 N LEU 75 11.660 58.815 28.112 1.00 3.00 ATOM 234 CA LEU 75 12.138 57.628 27.413 1.00 3.00 ATOM 235 C LEU 75 11.403 57.442 26.088 1.00 3.00 ATOM 236 O LEU 75 11.968 56.929 25.125 1.00 3.00 ATOM 237 N GLY 76 10.142 57.860 26.041 1.00 3.00 ATOM 238 CA GLY 76 9.353 57.735 24.822 1.00 3.00 ATOM 239 C GLY 76 9.560 58.928 23.894 1.00 3.00 ATOM 240 O GLY 76 8.967 58.991 22.817 1.00 3.00 ATOM 241 N ASP 77 10.404 59.867 24.316 1.00 3.00 ATOM 242 CA ASP 77 10.677 61.045 23.510 1.00 3.00 ATOM 243 C ASP 77 9.481 61.968 23.361 1.00 3.00 ATOM 244 O ASP 77 9.395 62.740 22.407 1.00 3.00 ATOM 245 N ARG 78 8.558 61.898 24.314 1.00 3.00 ATOM 246 CA ARG 78 7.355 62.722 24.273 1.00 3.00 ATOM 247 C ARG 78 7.441 63.930 25.210 1.00 3.00 ATOM 248 O ARG 78 7.669 63.771 26.406 1.00 3.00 ATOM 249 N PRO 79 7.262 65.133 24.670 1.00 3.00 ATOM 250 CA PRO 79 7.310 66.335 25.501 1.00 3.00 ATOM 251 C PRO 79 6.235 66.220 26.551 1.00 3.00 ATOM 252 O PRO 79 5.178 65.651 26.301 1.00 3.00 ATOM 253 N PHE 80 6.495 66.763 27.731 1.00 3.00 ATOM 254 CA PHE 80 5.517 66.675 28.801 1.00 3.00 ATOM 255 C PHE 80 5.683 67.819 29.780 1.00 3.00 ATOM 256 O PHE 80 6.611 68.620 29.669 1.00 3.00 ATOM 257 N ASP 81 4.771 67.887 30.743 1.00 3.00 ATOM 258 CA ASP 81 4.818 68.914 31.773 1.00 3.00 ATOM 259 C ASP 81 4.138 68.350 33.011 1.00 3.00 ATOM 260 O ASP 81 3.269 67.489 32.902 1.00 3.00 ATOM 261 N VAL 82 4.549 68.822 34.183 1.00 3.00 ATOM 262 CA VAL 82 3.977 68.363 35.442 1.00 3.00 ATOM 263 C VAL 82 3.924 69.487 36.459 1.00 3.00 ATOM 264 O VAL 82 4.805 70.349 36.499 1.00 3.00 ATOM 265 N GLU 83 2.873 69.479 37.270 1.00 3.00 ATOM 266 CA GLU 83 2.689 70.470 38.318 1.00 3.00 ATOM 267 C GLU 83 2.940 69.758 39.638 1.00 3.00 ATOM 268 O GLU 83 2.370 68.699 39.891 1.00 3.00 ATOM 269 N TYR 84 3.799 70.330 40.473 1.00 3.00 ATOM 270 CA TYR 84 4.091 69.718 41.759 1.00 3.00 ATOM 271 C TYR 84 4.612 70.731 42.767 1.00 3.00 ATOM 272 O TYR 84 4.948 71.876 42.428 1.00 3.00 ATOM 273 N ARG 85 4.666 70.292 44.019 1.00 3.00 ATOM 274 CA ARG 85 5.149 71.115 45.106 1.00 3.00 ATOM 275 C ARG 85 6.639 70.868 45.268 1.00 3.00 ATOM 276 O ARG 85 7.065 69.766 45.631 1.00 3.00 ATOM 277 N ILE 86 7.433 71.890 44.965 1.00 3.00 ATOM 278 CA ILE 86 8.880 71.794 45.086 1.00 3.00 ATOM 279 C ILE 86 9.247 72.158 46.512 1.00 3.00 ATOM 280 O ILE 86 8.577 72.971 47.149 1.00 3.00 ATOM 281 N VAL 87 10.315 71.555 47.008 1.00 3.00 ATOM 282 CA VAL 87 10.771 71.797 48.370 1.00 3.00 ATOM 283 C VAL 87 11.781 72.930 48.439 1.00 3.00 ATOM 284 O VAL 87 12.837 72.871 47.808 1.00 3.00 ATOM 285 N ARG 88 11.451 73.966 49.200 1.00 3.00 ATOM 286 CA ARG 88 12.346 75.099 49.384 1.00 3.00 ATOM 287 C ARG 88 13.358 74.654 50.437 1.00 3.00 ATOM 288 O ARG 88 13.044 73.795 51.266 1.00 3.00 ATOM 289 N PRO 89 14.569 75.205 50.420 1.00 3.00 ATOM 290 CA PRO 89 15.545 74.780 51.421 1.00 3.00 ATOM 291 C PRO 89 15.056 75.033 52.844 1.00 3.00 ATOM 292 O PRO 89 15.391 74.274 53.755 1.00 3.00 ATOM 293 N ASP 90 14.261 76.083 53.048 1.00 3.00 ATOM 294 CA ASP 90 13.777 76.369 54.400 1.00 3.00 ATOM 295 C ASP 90 12.655 75.438 54.863 1.00 3.00 ATOM 296 O ASP 90 12.116 75.597 55.959 1.00 3.00 ATOM 297 N GLY 91 12.304 74.466 54.030 1.00 3.00 ATOM 298 CA GLY 91 11.280 73.516 54.425 1.00 3.00 ATOM 299 C GLY 91 9.879 73.679 53.875 1.00 3.00 ATOM 300 O GLY 91 9.123 72.707 53.866 1.00 3.00 ATOM 301 N GLN 92 9.505 74.875 53.429 1.00 3.00 ATOM 302 CA GLN 92 8.163 75.037 52.891 1.00 3.00 ATOM 303 C GLN 92 8.113 74.618 51.424 1.00 3.00 ATOM 304 O GLN 92 9.149 74.448 50.776 1.00 3.00 ATOM 305 N VAL 93 6.900 74.444 50.911 1.00 3.00 ATOM 306 CA VAL 93 6.694 74.010 49.536 1.00 3.00 ATOM 307 C VAL 93 6.269 75.125 48.593 1.00 3.00 ATOM 308 O VAL 93 5.512 76.019 48.974 1.00 3.00 ATOM 309 N ARG 94 6.763 75.058 47.358 1.00 3.00 ATOM 310 CA ARG 94 6.429 76.038 46.332 1.00 3.00 ATOM 311 C ARG 94 5.888 75.296 45.108 1.00 3.00 ATOM 312 O ARG 94 6.531 74.382 44.591 1.00 3.00 ATOM 313 N GLU 95 4.701 75.692 44.662 1.00 3.00 ATOM 314 CA GLU 95 4.071 75.084 43.503 1.00 3.00 ATOM 315 C GLU 95 4.809 75.461 42.231 1.00 3.00 ATOM 316 O GLU 95 4.933 76.641 41.896 1.00 3.00 ATOM 317 N LEU 96 5.273 74.444 41.519 1.00 3.00 ATOM 318 CA LEU 96 6.021 74.642 40.290 1.00 3.00 ATOM 319 C LEU 96 5.469 73.821 39.131 1.00 3.00 ATOM 320 O LEU 96 4.914 72.739 39.320 1.00 3.00 ATOM 321 N LEU 97 5.604 74.372 37.931 1.00 3.00 ATOM 322 CA LEU 97 5.197 73.693 36.714 1.00 3.00 ATOM 323 C LEU 97 6.506 73.484 35.967 1.00 3.00 ATOM 324 O LEU 97 7.224 74.441 35.687 1.00 3.00 ATOM 325 N GLU 98 6.820 72.231 35.672 1.00 3.00 ATOM 326 CA GLU 98 8.039 71.899 34.953 1.00 3.00 ATOM 327 C GLU 98 7.576 71.517 33.543 1.00 3.00 ATOM 328 O GLU 98 6.715 70.648 33.382 1.00 3.00 ATOM 329 N ARG 99 8.124 72.196 32.536 1.00 3.00 ATOM 330 CA ARG 99 7.776 71.960 31.136 1.00 3.00 ATOM 331 C ARG 99 9.007 71.425 30.443 1.00 3.00 ATOM 332 O ARG 99 10.061 72.058 30.466 1.00 3.00 ATOM 333 N ASN 100 8.852 70.266 29.811 1.00 3.00 ATOM 334 CA ASN 100 9.971 69.578 29.189 1.00 3.00 ATOM 335 C ASN 100 9.876 69.258 27.711 1.00 3.00 ATOM 336 O ASN 100 8.887 68.694 27.241 1.00 3.00 ATOM 337 N HIS 101 10.934 69.611 26.990 1.00 3.00 ATOM 338 CA HIS 101 11.033 69.302 25.575 1.00 3.00 ATOM 339 C HIS 101 12.135 68.248 25.480 1.00 3.00 ATOM 340 O HIS 101 13.202 68.421 26.068 1.00 3.00 ATOM 341 N ILE 102 11.875 67.162 24.756 1.00 3.00 ATOM 342 CA ILE 102 12.857 66.086 24.600 1.00 3.00 ATOM 343 C ILE 102 13.624 66.254 23.293 1.00 3.00 ATOM 344 O ILE 102 13.024 66.356 22.229 1.00 3.00 ATOM 345 N GLN 103 14.950 66.279 23.388 1.00 3.00 ATOM 346 CA GLN 103 15.815 66.438 22.221 1.00 3.00 ATOM 347 C GLN 103 16.458 65.109 21.829 1.00 3.00 ATOM 348 O GLN 103 16.977 64.388 22.682 1.00 3.00 ATOM 349 N ARG 104 16.423 64.793 20.537 1.00 3.00 ATOM 350 CA ARG 104 17.009 63.557 20.021 1.00 3.00 ATOM 351 C ARG 104 18.250 63.879 19.198 1.00 3.00 ATOM 352 O ARG 104 18.327 64.939 18.577 1.00 3.00 ATOM 353 N GLN 105 19.219 62.965 19.200 1.00 3.00 ATOM 354 CA GLN 105 20.456 63.162 18.450 1.00 3.00 ATOM 355 C GLN 105 20.293 62.739 16.996 1.00 3.00 ATOM 356 O GLN 105 19.215 62.310 16.583 1.00 3.00 ATOM 357 N ALA 106 21.374 62.848 16.229 1.00 3.00 ATOM 358 CA ALA 106 21.358 62.495 14.812 1.00 3.00 ATOM 359 C ALA 106 20.920 61.070 14.507 1.00 3.00 ATOM 360 O ALA 106 20.427 60.797 13.414 1.00 3.00 ATOM 361 N SER 107 21.101 60.158 15.457 1.00 3.00 ATOM 362 CA SER 107 20.700 58.773 15.236 1.00 3.00 ATOM 363 C SER 107 19.267 58.518 15.693 1.00 3.00 ATOM 364 O SER 107 18.769 57.392 15.620 1.00 3.00 ATOM 365 N GLY 108 18.606 59.568 16.167 1.00 3.00 ATOM 366 CA GLY 108 17.229 59.435 16.607 1.00 3.00 ATOM 367 C GLY 108 17.036 59.019 18.052 1.00 3.00 ATOM 368 O GLY 108 15.912 58.736 18.468 1.00 3.00 ATOM 369 N GLN 109 18.117 58.979 18.822 1.00 3.00 ATOM 370 CA GLN 109 18.018 58.593 20.222 1.00 3.00 ATOM 371 C GLN 109 17.943 59.809 21.139 1.00 3.00 ATOM 372 O GLN 109 18.498 60.866 20.832 1.00 3.00 ATOM 373 N VAL 110 17.244 59.654 22.260 1.00 3.00 ATOM 374 CA VAL 110 17.097 60.732 23.236 1.00 3.00 ATOM 375 C VAL 110 18.482 61.191 23.679 1.00 3.00 ATOM 376 O VAL 110 19.301 60.389 24.126 1.00 3.00 ATOM 377 N ASP 111 18.736 62.488 23.562 1.00 3.00 ATOM 378 CA ASP 111 20.032 63.045 23.912 1.00 3.00 ATOM 379 C ASP 111 19.996 63.986 25.112 1.00 3.00 ATOM 380 O ASP 111 20.931 64.027 25.911 1.00 3.00 ATOM 381 N HIS 112 18.917 64.745 25.244 1.00 3.00 ATOM 382 CA HIS 112 18.821 65.666 26.355 1.00 3.00 ATOM 383 C HIS 112 17.401 66.116 26.597 1.00 3.00 ATOM 384 O HIS 112 16.501 65.843 25.802 1.00 3.00 ATOM 385 N LEU 113 17.215 66.802 27.719 1.00 3.00 ATOM 386 CA LEU 113 15.924 67.348 28.111 1.00 3.00 ATOM 387 C LEU 113 16.177 68.833 28.348 1.00 3.00 ATOM 388 O LEU 113 17.124 69.200 29.040 1.00 3.00 ATOM 389 N TRP 114 15.340 69.685 27.767 1.00 3.00 ATOM 390 CA TRP 114 15.491 71.129 27.911 1.00 3.00 ATOM 391 C TRP 114 14.133 71.735 28.233 1.00 3.00 ATOM 392 O TRP 114 13.123 71.343 27.654 1.00 3.00 ATOM 393 N GLY 115 14.100 72.697 29.140 1.00 3.00 ATOM 394 CA GLY 115 12.822 73.292 29.459 1.00 3.00 ATOM 395 C GLY 115 12.891 74.433 30.436 1.00 3.00 ATOM 396 O GLY 115 13.928 75.083 30.589 1.00 3.00 ATOM 397 N THR 116 11.772 74.670 31.108 1.00 3.00 ATOM 398 CA THR 116 11.676 75.745 32.082 1.00 3.00 ATOM 399 C THR 116 10.875 75.292 33.292 1.00 3.00 ATOM 400 O THR 116 9.998 74.441 33.182 1.00 3.00 ATOM 401 N VAL 117 11.186 75.880 34.441 1.00 3.00 ATOM 402 CA VAL 117 10.438 75.631 35.665 1.00 3.00 ATOM 403 C VAL 117 9.771 76.969 35.932 1.00 3.00 ATOM 404 O VAL 117 10.405 78.019 35.818 1.00 3.00 ATOM 405 N ILE 118 8.490 76.924 36.277 1.00 3.00 ATOM 406 CA ILE 118 7.713 78.132 36.532 1.00 3.00 ATOM 407 C ILE 118 7.081 78.103 37.914 1.00 3.00 ATOM 408 O ILE 118 6.559 77.072 38.341 1.00 3.00 ATOM 409 N ASP 119 7.115 79.242 38.597 1.00 3.00 ATOM 410 CA ASP 119 6.498 79.382 39.912 1.00 3.00 ATOM 411 C ASP 119 5.014 79.576 39.608 1.00 3.00 ATOM 412 O ASP 119 4.640 80.552 38.952 1.00 3.00 ATOM 413 N MET 120 4.170 78.645 40.045 1.00 3.00 ATOM 414 CA MET 120 2.737 78.784 39.796 1.00 3.00 ATOM 415 C MET 120 1.961 78.953 41.092 1.00 3.00 ATOM 416 O MET 120 0.824 78.499 41.223 1.00 3.00 ATOM 417 N THR 121 2.599 79.631 42.039 1.00 3.00 ATOM 418 CA THR 121 2.023 79.922 43.344 1.00 3.00 ATOM 419 C THR 121 0.674 80.621 43.228 1.00 3.00 ATOM 420 O THR 121 -0.266 80.303 43.957 1.00 3.00 TER END ########################## # # # ACE results: # # # ########################## # WARNING! TARGET 873 atoms, MODEL 573 atoms, 429 common with TARGET Number of atoms possible to evaluate: 420 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 36.28 81.7 208 99.0 210 ARMSMC SECONDARY STRUCTURE . . 27.17 86.2 130 100.0 130 ARMSMC SURFACE . . . . . . . . 36.00 82.2 174 98.9 176 ARMSMC BURIED . . . . . . . . 37.71 79.4 34 100.0 34 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 92 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 82 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 61 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 79 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 72 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 58 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 51 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 63 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 20 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 19.51 (Number of atoms: 105) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 19.51 105 99.1 106 CRMSCA CRN = ALL/NP . . . . . 0.1858 CRMSCA SECONDARY STRUCTURE . . 17.23 65 100.0 65 CRMSCA SURFACE . . . . . . . . 20.03 88 98.9 89 CRMSCA BURIED . . . . . . . . 16.57 17 100.0 17 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 19.50 420 80.5 522 CRMSMC SECONDARY STRUCTURE . . 17.31 260 80.2 324 CRMSMC SURFACE . . . . . . . . 20.01 352 80.4 438 CRMSMC BURIED . . . . . . . . 16.61 68 81.0 84 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 449 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 377 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 324 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 382 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 67 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 19.50 420 48.1 873 CRMSALL SECONDARY STRUCTURE . . 17.31 260 44.5 584 CRMSALL SURFACE . . . . . . . . 20.01 352 47.7 738 CRMSALL BURIED . . . . . . . . 16.61 68 50.4 135 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.328 0.658 0.329 105 99.1 106 ERRCA SECONDARY STRUCTURE . . 12.775 0.639 0.320 65 100.0 65 ERRCA SURFACE . . . . . . . . 14.708 0.663 0.331 88 98.9 89 ERRCA BURIED . . . . . . . . 12.358 0.630 0.315 17 100.0 17 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.331 0.658 0.329 420 80.5 522 ERRMC SECONDARY STRUCTURE . . 12.850 0.641 0.320 260 80.2 324 ERRMC SURFACE . . . . . . . . 14.698 0.663 0.332 352 80.4 438 ERRMC BURIED . . . . . . . . 12.432 0.633 0.316 68 81.0 84 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 449 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 377 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 324 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 382 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 67 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.331 0.658 0.329 420 48.1 873 ERRALL SECONDARY STRUCTURE . . 12.850 0.641 0.320 260 44.5 584 ERRALL SURFACE . . . . . . . . 14.698 0.663 0.332 352 47.7 738 ERRALL BURIED . . . . . . . . 12.432 0.633 0.316 68 50.4 135 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 16 105 106 DISTCA CA (P) 0.00 0.00 0.00 0.00 15.09 106 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.28 DISTCA ALL (N) 0 0 0 0 59 420 873 DISTALL ALL (P) 0.00 0.00 0.00 0.00 6.76 873 DISTALL ALL (RMS) 0.00 0.00 0.00 0.00 8.21 DISTALL END of the results output