####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 46 ( 184), selected 46 , name T0600AL396_1-D2 # Molecule2: number of CA atoms 47 ( 389), selected 46 , name T0600-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0600AL396_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 46 76 - 122 2.23 2.23 LCS_AVERAGE: 97.87 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 77 - 122 1.64 2.26 LCS_AVERAGE: 94.82 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 81 - 121 0.99 2.46 LCS_AVERAGE: 79.46 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 46 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 76 G 76 4 25 46 0 3 5 7 8 15 19 24 29 30 33 36 41 42 43 46 46 46 46 46 LCS_GDT D 77 D 77 10 45 46 3 9 14 19 25 29 33 35 41 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT R 78 R 78 13 45 46 4 14 21 34 40 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT P 79 P 79 27 45 46 4 19 33 39 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT F 80 F 80 28 45 46 10 22 36 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT D 81 D 81 40 45 46 8 28 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT V 82 V 82 40 45 46 9 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT E 83 E 83 40 45 46 9 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT Y 84 Y 84 40 45 46 9 30 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT R 85 R 85 40 45 46 9 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT I 86 I 86 40 45 46 4 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT V 87 V 87 40 45 46 4 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT R 88 R 88 40 45 46 13 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT P 89 P 89 40 45 46 5 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT D 90 D 90 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT G 91 G 91 40 45 46 5 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT Q 92 Q 92 40 45 46 5 20 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT V 93 V 93 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT R 94 R 94 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT E 95 E 95 40 45 46 10 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT L 96 L 96 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT L 97 L 97 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT E 98 E 98 40 45 46 10 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT R 99 R 99 40 45 46 10 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT N 100 N 100 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT H 101 H 101 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT I 102 I 102 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT Q 103 Q 103 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT R 104 R 104 40 45 46 13 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT Q 105 Q 105 40 45 46 10 28 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT A 106 A 106 40 45 46 9 10 34 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT S 107 S 107 40 45 46 9 12 34 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT G 108 G 108 40 45 46 9 10 21 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT Q 109 Q 109 40 45 46 9 12 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT V 110 V 110 40 45 46 9 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT D 111 D 111 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT H 112 H 112 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT L 113 L 113 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT W 114 W 114 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT G 115 G 115 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT T 116 T 116 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT I 118 I 118 40 45 46 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT D 119 D 119 40 45 46 11 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT M 120 M 120 40 45 46 10 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT T 121 T 121 40 45 46 6 19 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT E 122 E 122 36 45 46 3 10 29 39 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_AVERAGE LCS_A: 90.72 ( 79.46 94.82 97.87 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 31 37 41 43 44 44 44 44 45 45 45 45 45 45 46 46 46 46 46 GDT PERCENT_AT 31.91 65.96 78.72 87.23 91.49 93.62 93.62 93.62 93.62 95.74 95.74 95.74 95.74 95.74 95.74 97.87 97.87 97.87 97.87 97.87 GDT RMS_LOCAL 0.32 0.64 0.82 1.04 1.14 1.30 1.30 1.30 1.30 1.64 1.64 1.64 1.64 1.64 1.64 2.23 2.23 2.23 2.23 2.23 GDT RMS_ALL_AT 2.37 2.38 2.39 2.42 2.37 2.32 2.32 2.32 2.32 2.26 2.26 2.26 2.26 2.26 2.26 2.23 2.23 2.23 2.23 2.23 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 76 G 76 11.099 0 0.675 0.675 11.303 4.048 4.048 LGA D 77 D 77 7.079 4 0.444 0.444 8.876 13.929 6.964 LGA R 78 R 78 4.036 7 0.167 0.167 5.137 42.619 15.498 LGA P 79 P 79 2.311 3 0.114 0.114 2.917 66.905 38.231 LGA F 80 F 80 1.651 7 0.062 0.062 1.923 79.405 28.874 LGA D 81 D 81 0.951 4 0.092 0.092 1.202 88.214 44.107 LGA V 82 V 82 1.254 3 0.055 0.055 1.254 83.690 47.823 LGA E 83 E 83 1.344 5 0.049 0.049 2.004 75.119 33.386 LGA Y 84 Y 84 1.556 8 0.039 0.039 1.556 79.286 26.429 LGA R 85 R 85 1.213 7 0.132 0.132 1.419 81.429 29.610 LGA I 86 I 86 0.901 4 0.078 0.078 0.901 90.476 45.238 LGA V 87 V 87 0.815 3 0.044 0.044 1.238 88.214 50.408 LGA R 88 R 88 0.479 7 0.034 0.034 0.479 100.000 36.364 LGA P 89 P 89 0.728 3 0.016 0.016 0.869 90.476 51.701 LGA D 90 D 90 0.692 4 0.108 0.108 1.574 86.071 43.036 LGA G 91 G 91 0.906 0 0.079 0.079 1.455 85.952 85.952 LGA Q 92 Q 92 1.547 5 0.103 0.103 1.547 86.190 38.307 LGA V 93 V 93 0.242 3 0.087 0.087 0.744 95.238 54.422 LGA R 94 R 94 0.715 7 0.056 0.056 1.207 90.595 32.944 LGA E 95 E 95 1.026 5 0.013 0.013 1.026 85.952 38.201 LGA L 96 L 96 0.476 4 0.047 0.047 0.656 95.238 47.619 LGA L 97 L 97 0.387 4 0.031 0.031 0.489 100.000 50.000 LGA E 98 E 98 0.801 5 0.056 0.056 0.839 90.476 40.212 LGA R 99 R 99 0.804 7 0.041 0.041 0.872 90.476 32.900 LGA N 100 N 100 0.465 4 0.028 0.028 0.600 95.238 47.619 LGA H 101 H 101 0.120 6 0.064 0.064 0.290 100.000 40.000 LGA I 102 I 102 0.484 4 0.026 0.026 0.764 95.238 47.619 LGA Q 103 Q 103 0.388 5 0.117 0.117 0.891 97.619 43.386 LGA R 104 R 104 0.297 7 0.024 0.024 0.694 97.619 35.498 LGA Q 105 Q 105 0.599 5 0.042 0.042 1.410 88.333 39.259 LGA A 106 A 106 2.127 1 0.140 0.140 3.050 63.095 50.476 LGA S 107 S 107 2.102 2 0.149 0.149 2.223 66.786 44.524 LGA G 108 G 108 2.294 0 0.108 0.108 2.392 64.762 64.762 LGA Q 109 Q 109 1.847 5 0.036 0.036 1.847 77.143 34.286 LGA V 110 V 110 1.417 3 0.029 0.029 1.656 77.143 44.082 LGA D 111 D 111 1.119 4 0.121 0.121 1.119 85.952 42.976 LGA H 112 H 112 0.703 6 0.027 0.027 0.964 90.476 36.190 LGA L 113 L 113 0.443 4 0.113 0.113 0.532 97.619 48.810 LGA W 114 W 114 0.364 10 0.109 0.109 0.415 100.000 28.571 LGA G 115 G 115 0.467 0 0.036 0.036 0.467 100.000 100.000 LGA T 116 T 116 0.795 3 0.055 0.055 0.795 92.857 53.061 LGA I 118 I 118 0.591 4 0.052 0.052 0.648 90.476 45.238 LGA D 119 D 119 0.721 4 0.076 0.076 1.130 88.214 44.107 LGA M 120 M 120 0.850 4 0.197 0.197 0.924 90.476 45.238 LGA T 121 T 121 1.619 3 0.141 0.141 1.950 75.000 42.857 LGA E 122 E 122 2.083 5 0.528 0.528 2.983 64.881 28.836 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 46 184 184 100.00 382 184 48.17 47 SUMMARY(RMSD_GDC): 2.230 2.091 2.091 80.615 41.057 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 46 47 4.0 44 1.30 86.170 90.642 3.152 LGA_LOCAL RMSD: 1.296 Number of atoms: 44 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.318 Number of assigned atoms: 46 Std_ASGN_ATOMS RMSD: 2.230 Standard rmsd on all 46 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.961659 * X + 0.237798 * Y + 0.136614 * Z + -35.503719 Y_new = -0.256054 * X + 0.600120 * Y + 0.757821 * Z + -19.455736 Z_new = 0.098223 * X + -0.763746 * Y + 0.638000 * Z + -18.873035 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.260225 -0.098382 -0.874866 [DEG: -14.9098 -5.6369 -50.1261 ] ZXZ: 2.963236 0.878899 3.013687 [DEG: 169.7809 50.3572 172.6716 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0600AL396_1-D2 REMARK 2: T0600-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0600AL396_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 46 47 4.0 44 1.30 90.642 2.23 REMARK ---------------------------------------------------------- MOLECULE T0600AL396_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3h9w_A ATOM 229 N GLY 76 10.902 61.150 17.556 1.00 0.00 N ATOM 230 CA GLY 76 10.591 61.838 18.803 1.00 0.00 C ATOM 231 C GLY 76 9.724 60.980 19.718 1.00 0.00 C ATOM 232 O GLY 76 9.362 61.406 20.815 1.00 0.00 O ATOM 233 N ASP 77 9.397 59.773 19.263 1.00 0.00 N ATOM 234 CA ASP 77 8.576 58.871 20.054 1.00 0.00 C ATOM 235 C ASP 77 7.150 59.357 20.241 1.00 0.00 C ATOM 236 O ASP 77 6.473 58.975 21.195 1.00 0.00 O ATOM 237 N ARG 78 6.685 60.196 19.322 1.00 0.00 N ATOM 238 CA ARG 78 5.337 60.746 19.402 1.00 0.00 C ATOM 239 C ARG 78 4.360 60.040 18.457 1.00 0.00 C ATOM 240 O ARG 78 4.599 59.975 17.254 1.00 0.00 O ATOM 241 N PRO 79 3.266 59.510 18.997 1.00 0.00 N ATOM 242 CA PRO 79 2.275 58.836 18.160 1.00 0.00 C ATOM 243 C PRO 79 1.763 59.830 17.149 1.00 0.00 C ATOM 244 O PRO 79 1.662 61.017 17.439 1.00 0.00 O ATOM 245 N PHE 80 1.434 59.352 15.959 1.00 0.00 N ATOM 246 CA PHE 80 0.953 60.250 14.924 1.00 0.00 C ATOM 247 C PHE 80 0.073 59.514 13.935 1.00 0.00 C ATOM 248 O PHE 80 -0.084 58.295 14.011 1.00 0.00 O ATOM 249 N ASP 81 -0.500 60.269 13.005 1.00 0.00 N ATOM 250 CA ASP 81 -1.348 59.697 11.970 1.00 0.00 C ATOM 251 C ASP 81 -1.271 60.614 10.758 1.00 0.00 C ATOM 252 O ASP 81 -1.027 61.809 10.901 1.00 0.00 O ATOM 253 N VAL 82 -1.458 60.048 9.571 1.00 0.00 N ATOM 254 CA VAL 82 -1.408 60.818 8.335 1.00 0.00 C ATOM 255 C VAL 82 -2.393 60.276 7.315 1.00 0.00 C ATOM 256 O VAL 82 -2.629 59.068 7.241 1.00 0.00 O ATOM 257 N GLU 83 -2.977 61.184 6.542 1.00 0.00 N ATOM 258 CA GLU 83 -3.922 60.825 5.497 1.00 0.00 C ATOM 259 C GLU 83 -3.211 61.049 4.172 1.00 0.00 C ATOM 260 O GLU 83 -2.643 62.116 3.943 1.00 0.00 O ATOM 261 N TYR 84 -3.229 60.045 3.305 1.00 0.00 N ATOM 262 CA TYR 84 -2.578 60.178 2.012 1.00 0.00 C ATOM 263 C TYR 84 -3.154 59.219 0.982 1.00 0.00 C ATOM 264 O TYR 84 -3.920 58.298 1.304 1.00 0.00 O ATOM 265 N ARG 85 -2.777 59.454 -0.269 1.00 0.00 N ATOM 266 CA ARG 85 -3.216 58.634 -1.376 1.00 0.00 C ATOM 267 C ARG 85 -2.193 57.531 -1.589 1.00 0.00 C ATOM 268 O ARG 85 -1.045 57.793 -1.963 1.00 0.00 O ATOM 269 N ILE 86 -2.606 56.297 -1.319 1.00 0.00 N ATOM 270 CA ILE 86 -1.732 55.146 -1.491 1.00 0.00 C ATOM 271 C ILE 86 -1.857 54.684 -2.930 1.00 0.00 C ATOM 272 O ILE 86 -2.915 54.817 -3.546 1.00 0.00 O ATOM 273 N VAL 87 -0.774 54.140 -3.461 1.00 0.00 N ATOM 274 CA VAL 87 -0.747 53.670 -4.839 1.00 0.00 C ATOM 275 C VAL 87 -1.140 52.206 -4.948 1.00 0.00 C ATOM 276 O VAL 87 -0.500 51.337 -4.355 1.00 0.00 O ATOM 277 N ARG 88 -2.198 51.936 -5.702 1.00 0.00 N ATOM 278 CA ARG 88 -2.655 50.572 -5.922 1.00 0.00 C ATOM 279 C ARG 88 -1.744 50.005 -7.008 1.00 0.00 C ATOM 280 O ARG 88 -1.213 50.767 -7.822 1.00 0.00 O ATOM 281 N PRO 89 -1.539 48.691 -7.036 1.00 0.00 N ATOM 282 CA PRO 89 -0.663 48.142 -8.069 1.00 0.00 C ATOM 283 C PRO 89 -1.166 48.456 -9.475 1.00 0.00 C ATOM 284 O PRO 89 -0.362 48.623 -10.394 1.00 0.00 O ATOM 285 N ASP 90 -2.483 48.549 -9.655 1.00 0.00 N ATOM 286 CA ASP 90 -3.009 48.838 -10.990 1.00 0.00 C ATOM 287 C ASP 90 -2.856 50.301 -11.410 1.00 0.00 C ATOM 288 O ASP 90 -3.302 50.699 -12.487 1.00 0.00 O ATOM 289 N GLY 91 -2.224 51.102 -10.561 1.00 0.00 N ATOM 290 CA GLY 91 -1.999 52.492 -10.915 1.00 0.00 C ATOM 291 C GLY 91 -2.896 53.554 -10.317 1.00 0.00 C ATOM 292 O GLY 91 -2.501 54.719 -10.277 1.00 0.00 O ATOM 293 N GLN 92 -4.095 53.195 -9.864 1.00 0.00 N ATOM 294 CA GLN 92 -4.959 54.208 -9.279 1.00 0.00 C ATOM 295 C GLN 92 -4.613 54.434 -7.810 1.00 0.00 C ATOM 296 O GLN 92 -3.891 53.643 -7.198 1.00 0.00 O ATOM 297 N VAL 93 -5.127 55.526 -7.253 1.00 0.00 N ATOM 298 CA VAL 93 -4.856 55.893 -5.870 1.00 0.00 C ATOM 299 C VAL 93 -6.005 55.604 -4.917 1.00 0.00 C ATOM 300 O VAL 93 -7.174 55.757 -5.275 1.00 0.00 O ATOM 301 N ARG 94 -5.658 55.190 -3.700 1.00 0.00 N ATOM 302 CA ARG 94 -6.644 54.897 -2.667 1.00 0.00 C ATOM 303 C ARG 94 -6.302 55.718 -1.422 1.00 0.00 C ATOM 304 O ARG 94 -5.177 55.667 -0.924 1.00 0.00 O ATOM 305 N GLU 95 -7.279 56.477 -0.936 1.00 0.00 N ATOM 306 CA GLU 95 -7.098 57.299 0.247 1.00 0.00 C ATOM 307 C GLU 95 -6.987 56.436 1.490 1.00 0.00 C ATOM 308 O GLU 95 -7.900 55.673 1.816 1.00 0.00 O ATOM 309 N LEU 96 -5.872 56.585 2.190 1.00 0.00 N ATOM 310 CA LEU 96 -5.606 55.813 3.391 1.00 0.00 C ATOM 311 C LEU 96 -5.206 56.688 4.572 1.00 0.00 C ATOM 312 O LEU 96 -4.610 57.753 4.407 1.00 0.00 O ATOM 313 N LEU 97 -5.573 56.235 5.765 1.00 0.00 N ATOM 314 CA LEU 97 -5.210 56.909 6.998 1.00 0.00 C ATOM 315 C LEU 97 -4.304 55.908 7.699 1.00 0.00 C ATOM 316 O LEU 97 -4.704 54.774 7.950 1.00 0.00 O ATOM 317 N GLU 98 -3.080 56.326 7.988 1.00 0.00 N ATOM 318 CA GLU 98 -2.121 55.468 8.666 1.00 0.00 C ATOM 319 C GLU 98 -2.035 56.020 10.092 1.00 0.00 C ATOM 320 O GLU 98 -1.780 57.211 10.287 1.00 0.00 O ATOM 321 N ARG 99 -2.285 55.157 11.077 1.00 0.00 N ATOM 322 CA ARG 99 -2.256 55.533 12.489 1.00 0.00 C ATOM 323 C ARG 99 -1.122 54.778 13.140 1.00 0.00 C ATOM 324 O ARG 99 -1.071 53.550 13.078 1.00 0.00 O ATOM 325 N ASN 100 -0.229 55.524 13.782 1.00 0.00 N ATOM 326 CA ASN 100 0.970 54.949 14.368 1.00 0.00 C ATOM 327 C ASN 100 1.209 55.157 15.849 1.00 0.00 C ATOM 328 O ASN 100 1.144 56.278 16.356 1.00 0.00 O ATOM 329 N HIS 101 1.507 54.058 16.531 1.00 0.00 N ATOM 330 CA HIS 101 1.842 54.099 17.943 1.00 0.00 C ATOM 331 C HIS 101 3.329 53.756 18.004 1.00 0.00 C ATOM 332 O HIS 101 3.763 52.789 17.377 1.00 0.00 O ATOM 333 N ILE 102 4.105 54.547 18.741 1.00 0.00 N ATOM 334 CA ILE 102 5.546 54.314 18.866 1.00 0.00 C ATOM 335 C ILE 102 5.848 53.540 20.144 1.00 0.00 C ATOM 336 O ILE 102 5.450 53.951 21.229 1.00 0.00 O ATOM 337 N GLN 103 6.555 52.423 20.003 1.00 0.00 N ATOM 338 CA GLN 103 6.916 51.577 21.138 1.00 0.00 C ATOM 339 C GLN 103 8.386 51.758 21.513 1.00 0.00 C ATOM 340 O GLN 103 9.259 51.749 20.645 1.00 0.00 O ATOM 341 N ARG 104 8.650 51.920 22.807 1.00 0.00 N ATOM 342 CA ARG 104 10.013 52.094 23.306 1.00 0.00 C ATOM 343 C ARG 104 10.440 50.855 24.084 1.00 0.00 C ATOM 344 O ARG 104 9.607 50.189 24.698 1.00 0.00 O ATOM 345 N GLN 105 11.735 50.549 24.052 1.00 0.00 N ATOM 346 CA GLN 105 12.263 49.384 24.757 1.00 0.00 C ATOM 347 C GLN 105 12.549 49.707 26.218 1.00 0.00 C ATOM 348 O GLN 105 12.322 50.830 26.670 1.00 0.00 O ATOM 349 N ALA 106 13.065 48.721 26.945 1.00 0.00 N ATOM 350 CA ALA 106 13.374 48.883 28.364 1.00 0.00 C ATOM 351 C ALA 106 14.328 50.022 28.690 1.00 0.00 C ATOM 352 O ALA 106 14.302 50.550 29.801 1.00 0.00 O ATOM 353 N SER 107 15.174 50.404 27.738 1.00 0.00 N ATOM 354 CA SER 107 16.114 51.492 27.979 1.00 0.00 C ATOM 355 C SER 107 15.532 52.843 27.574 1.00 0.00 C ATOM 356 O SER 107 16.200 53.875 27.669 1.00 0.00 O ATOM 357 N GLY 108 14.283 52.833 27.119 1.00 0.00 N ATOM 358 CA GLY 108 13.631 54.069 26.728 1.00 0.00 C ATOM 359 C GLY 108 13.849 54.505 25.293 1.00 0.00 C ATOM 360 O GLY 108 13.462 55.611 24.918 1.00 0.00 O ATOM 361 N GLN 109 14.465 53.649 24.485 1.00 0.00 N ATOM 362 CA GLN 109 14.711 53.988 23.092 1.00 0.00 C ATOM 363 C GLN 109 13.640 53.412 22.172 1.00 0.00 C ATOM 364 O GLN 109 13.067 52.357 22.455 1.00 0.00 O ATOM 365 N VAL 110 13.367 54.116 21.078 1.00 0.00 N ATOM 366 CA VAL 110 12.370 53.677 20.103 1.00 0.00 C ATOM 367 C VAL 110 12.741 52.282 19.609 1.00 0.00 C ATOM 368 O VAL 110 13.854 52.054 19.137 1.00 0.00 O ATOM 369 N ASP 111 11.799 51.353 19.712 1.00 0.00 N ATOM 370 CA ASP 111 12.041 49.976 19.314 1.00 0.00 C ATOM 371 C ASP 111 11.216 49.528 18.112 1.00 0.00 C ATOM 372 O ASP 111 11.684 48.750 17.281 1.00 0.00 O ATOM 373 N HIS 112 9.987 50.014 18.015 1.00 0.00 N ATOM 374 CA HIS 112 9.147 49.623 16.904 1.00 0.00 C ATOM 375 C HIS 112 7.987 50.569 16.711 1.00 0.00 C ATOM 376 O HIS 112 7.733 51.445 17.538 1.00 0.00 O ATOM 377 N LEU 113 7.294 50.382 15.593 1.00 0.00 N ATOM 378 CA LEU 113 6.123 51.172 15.244 1.00 0.00 C ATOM 379 C LEU 113 5.017 50.152 14.992 1.00 0.00 C ATOM 380 O LEU 113 5.221 49.182 14.266 1.00 0.00 O ATOM 381 N TRP 114 3.855 50.364 15.599 1.00 0.00 N ATOM 382 CA TRP 114 2.730 49.448 15.444 1.00 0.00 C ATOM 383 C TRP 114 1.472 50.259 15.167 1.00 0.00 C ATOM 384 O TRP 114 1.253 51.298 15.783 1.00 0.00 O ATOM 385 N GLY 115 0.635 49.786 14.257 1.00 0.00 N ATOM 386 CA GLY 115 -0.569 50.536 13.982 1.00 0.00 C ATOM 387 C GLY 115 -1.500 49.881 12.998 1.00 0.00 C ATOM 388 O GLY 115 -1.475 48.663 12.806 1.00 0.00 O ATOM 389 N THR 116 -2.323 50.706 12.365 1.00 0.00 N ATOM 390 CA THR 116 -3.289 50.226 11.390 1.00 0.00 C ATOM 391 C THR 116 -3.370 51.182 10.210 1.00 0.00 C ATOM 392 O THR 116 -3.140 52.379 10.356 1.00 0.00 O ATOM 393 N ILE 118 -6.092 52.370 7.305 1.00 0.00 N ATOM 394 CA ILE 118 -7.531 52.363 7.072 1.00 0.00 C ATOM 395 C ILE 118 -7.877 52.950 5.713 1.00 0.00 C ATOM 396 O ILE 118 -7.309 53.966 5.310 1.00 0.00 O ATOM 397 N ASP 119 -8.820 52.317 5.025 1.00 0.00 N ATOM 398 CA ASP 119 -9.297 52.797 3.733 1.00 0.00 C ATOM 399 C ASP 119 -10.271 53.919 4.088 1.00 0.00 C ATOM 400 O ASP 119 -11.280 53.674 4.752 1.00 0.00 O ATOM 401 N MET 120 -9.963 55.149 3.685 1.00 0.00 N ATOM 402 CA MET 120 -10.864 56.261 3.983 1.00 0.00 C ATOM 403 C MET 120 -11.452 56.857 2.714 1.00 0.00 C ATOM 404 O MET 120 -11.700 58.060 2.625 1.00 0.00 O ATOM 405 N THR 121 -11.682 55.982 1.743 1.00 0.00 N ATOM 406 CA THR 121 -12.262 56.344 0.458 1.00 0.00 C ATOM 407 C THR 121 -13.586 57.082 0.619 1.00 0.00 C ATOM 408 O THR 121 -13.849 58.064 -0.076 1.00 0.00 O ATOM 409 N GLU 122 -14.419 56.595 1.532 1.00 0.00 N ATOM 410 CA GLU 122 -15.729 57.185 1.781 1.00 0.00 C ATOM 411 C GLU 122 -15.655 58.640 2.222 1.00 0.00 C ATOM 412 O GLU 122 -16.586 59.413 1.991 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 184 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 31.53 86.4 88 95.7 92 ARMSMC SECONDARY STRUCTURE . . 16.72 91.1 56 93.3 60 ARMSMC SURFACE . . . . . . . . 33.18 84.6 78 95.1 82 ARMSMC BURIED . . . . . . . . 12.72 100.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 37 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 28 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 23 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.23 (Number of atoms: 46) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.23 46 97.9 47 CRMSCA CRN = ALL/NP . . . . . 0.0485 CRMSCA SECONDARY STRUCTURE . . 0.95 29 96.7 30 CRMSCA SURFACE . . . . . . . . 2.35 41 97.6 42 CRMSCA BURIED . . . . . . . . 0.62 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.09 184 79.7 231 CRMSMC SECONDARY STRUCTURE . . 0.95 116 77.9 149 CRMSMC SURFACE . . . . . . . . 2.20 164 79.6 206 CRMSMC BURIED . . . . . . . . 0.65 20 80.0 25 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 201 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 167 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 143 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 176 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 25 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.09 184 47.3 389 CRMSALL SECONDARY STRUCTURE . . 0.95 116 44.1 263 CRMSALL SURFACE . . . . . . . . 2.20 164 47.7 344 CRMSALL BURIED . . . . . . . . 0.65 20 44.4 45 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.528 1.000 0.500 46 97.9 47 ERRCA SECONDARY STRUCTURE . . 0.877 1.000 0.500 29 96.7 30 ERRCA SURFACE . . . . . . . . 1.640 1.000 0.500 41 97.6 42 ERRCA BURIED . . . . . . . . 0.610 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.473 1.000 0.500 184 79.7 231 ERRMC SECONDARY STRUCTURE . . 0.863 1.000 0.500 116 77.9 149 ERRMC SURFACE . . . . . . . . 1.578 1.000 0.500 164 79.6 206 ERRMC BURIED . . . . . . . . 0.612 1.000 0.500 20 80.0 25 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 201 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 167 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 143 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 176 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 25 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.473 1.000 0.500 184 47.3 389 ERRALL SECONDARY STRUCTURE . . 0.863 1.000 0.500 116 44.1 263 ERRALL SURFACE . . . . . . . . 1.578 1.000 0.500 164 47.7 344 ERRALL BURIED . . . . . . . . 0.612 1.000 0.500 20 44.4 45 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 19 39 43 44 45 46 47 DISTCA CA (P) 40.43 82.98 91.49 93.62 95.74 47 DISTCA CA (RMS) 0.68 1.10 1.36 1.43 1.68 DISTCA ALL (N) 90 151 168 178 182 184 389 DISTALL ALL (P) 23.14 38.82 43.19 45.76 46.79 389 DISTALL ALL (RMS) 0.71 1.05 1.27 1.51 1.81 DISTALL END of the results output