####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 57 ( 228), selected 57 , name T0600AL396_1-D1 # Molecule2: number of CA atoms 59 ( 484), selected 57 , name T0600-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0600AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 57 17 - 75 2.50 2.50 LCS_AVERAGE: 96.61 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 17 - 45 1.86 2.58 LCS_AVERAGE: 39.34 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 59 - 75 0.87 4.61 LCS_AVERAGE: 20.37 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 57 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 17 G 17 12 29 57 9 21 27 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT I 18 I 18 12 29 57 9 21 27 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT G 19 G 19 12 29 57 9 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT S 20 S 20 12 29 57 9 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT W 21 W 21 12 29 57 9 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT V 22 V 22 12 29 57 9 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT L 23 L 23 12 29 57 8 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT H 24 H 24 12 29 57 9 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT M 25 M 25 12 29 57 9 19 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT E 26 E 26 12 29 57 9 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT S 27 S 27 12 29 57 9 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT G 28 G 28 12 29 57 3 3 17 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT R 29 R 29 4 29 57 3 3 4 18 33 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT L 30 L 30 6 29 57 3 6 10 17 22 39 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT E 31 E 31 6 29 57 3 13 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT W 32 W 32 12 29 57 7 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT S 33 S 33 12 29 57 9 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT Q 34 Q 34 12 29 57 8 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT A 35 A 35 12 29 57 5 16 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT V 36 V 36 12 29 57 5 12 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT H 37 H 37 12 29 57 5 6 22 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT D 38 D 38 12 29 57 5 8 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT I 39 I 39 12 29 57 6 8 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT F 40 F 40 12 29 57 6 8 26 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT G 41 G 41 12 29 57 6 15 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT T 42 T 42 12 29 57 3 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT D 43 D 43 12 29 57 7 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT S 44 S 44 12 29 57 4 7 16 29 40 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT A 45 A 45 9 29 57 4 7 11 14 21 30 43 51 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT T 46 T 46 9 19 57 4 5 10 14 17 28 37 48 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT F 47 F 47 5 19 57 3 5 6 11 17 28 41 48 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT D 48 D 48 5 19 57 3 6 13 23 35 40 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT A 49 A 49 3 19 57 3 3 7 12 14 37 44 51 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT D 52 D 52 7 9 57 5 7 7 13 29 41 46 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT A 53 A 53 7 9 57 5 7 11 21 35 40 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT Y 54 Y 54 7 9 57 5 7 16 33 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT F 55 F 55 7 9 57 5 7 7 17 34 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT Q 56 Q 56 7 9 57 5 7 10 19 29 37 44 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT R 57 R 57 7 19 57 4 7 7 10 18 34 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT V 58 V 58 7 19 57 4 12 20 30 41 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT H 59 H 59 17 19 57 6 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT P 60 P 60 17 19 57 6 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT D 61 D 61 17 19 57 6 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT D 62 D 62 17 19 57 9 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT R 63 R 63 17 19 57 9 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT A 64 A 64 17 19 57 3 3 15 30 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT R 65 R 65 17 19 57 10 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT V 66 V 66 17 19 57 10 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT R 67 R 67 17 19 57 10 15 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT R 68 R 68 17 19 57 10 14 26 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT E 69 E 69 17 19 57 10 14 27 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT L 70 L 70 17 19 57 10 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT D 71 D 71 17 19 57 10 14 22 36 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT R 72 R 72 17 19 57 10 11 22 33 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT H 73 H 73 17 19 57 10 14 26 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT V 74 V 74 17 19 57 10 14 26 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_GDT L 75 L 75 17 19 57 3 14 24 36 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 LCS_AVERAGE LCS_A: 52.11 ( 20.37 39.34 96.61 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 21 29 38 42 44 47 52 55 57 57 57 57 57 57 57 57 57 57 57 GDT PERCENT_AT 16.95 35.59 49.15 64.41 71.19 74.58 79.66 88.14 93.22 96.61 96.61 96.61 96.61 96.61 96.61 96.61 96.61 96.61 96.61 96.61 GDT RMS_LOCAL 0.22 0.66 1.06 1.33 1.46 1.55 1.72 2.10 2.34 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 GDT RMS_ALL_AT 7.83 2.55 2.56 2.58 2.62 2.62 2.63 2.54 2.51 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 17 G 17 1.229 0 0.463 0.463 3.578 71.905 71.905 LGA I 18 I 18 0.896 4 0.105 0.105 1.041 90.595 45.298 LGA G 19 G 19 0.508 0 0.102 0.102 0.934 90.476 90.476 LGA S 20 S 20 0.521 2 0.031 0.031 0.521 95.238 63.492 LGA W 21 W 21 0.533 10 0.052 0.052 0.533 95.238 27.211 LGA V 22 V 22 0.570 3 0.117 0.117 0.570 95.238 54.422 LGA L 23 L 23 0.646 4 0.017 0.017 0.736 90.476 45.238 LGA H 24 H 24 0.807 6 0.060 0.060 1.184 88.214 35.286 LGA M 25 M 25 1.293 4 0.076 0.076 2.094 79.524 39.762 LGA E 26 E 26 1.136 5 0.081 0.081 1.908 79.286 35.238 LGA S 27 S 27 1.573 2 0.045 0.045 1.953 75.000 50.000 LGA G 28 G 28 2.188 0 0.644 0.644 3.260 63.095 63.095 LGA R 29 R 29 3.435 7 0.072 0.072 3.435 53.690 19.524 LGA L 30 L 30 4.080 4 0.594 0.594 4.198 41.905 20.952 LGA E 31 E 31 1.540 5 0.123 0.123 2.238 79.643 35.397 LGA W 32 W 32 0.887 10 0.113 0.113 0.887 90.476 25.850 LGA S 33 S 33 0.233 2 0.045 0.045 0.431 100.000 66.667 LGA Q 34 Q 34 0.545 5 0.076 0.076 1.067 90.595 40.265 LGA A 35 A 35 1.273 1 0.140 0.140 1.421 83.690 66.952 LGA V 36 V 36 1.852 3 0.093 0.093 1.990 72.857 41.633 LGA H 37 H 37 2.228 6 0.026 0.026 2.484 64.762 25.905 LGA D 38 D 38 1.869 4 0.019 0.019 2.072 70.833 35.417 LGA I 39 I 39 1.903 4 0.041 0.041 2.191 70.833 35.417 LGA F 40 F 40 1.999 7 0.102 0.102 1.999 75.000 27.273 LGA G 41 G 41 1.224 0 0.266 0.266 1.441 83.690 83.690 LGA T 42 T 42 1.176 3 0.099 0.099 1.691 79.286 45.306 LGA D 43 D 43 1.362 4 0.123 0.123 2.922 71.190 35.595 LGA S 44 S 44 2.751 2 0.070 0.070 4.217 50.595 33.730 LGA A 45 A 45 5.117 1 0.047 0.047 6.248 25.476 20.381 LGA T 46 T 46 5.685 3 0.128 0.128 6.248 21.548 12.313 LGA F 47 F 47 5.615 7 0.101 0.101 5.615 27.619 10.043 LGA D 48 D 48 4.214 4 0.619 0.619 5.282 32.976 16.488 LGA A 49 A 49 5.004 1 0.198 0.198 5.300 28.810 23.048 LGA D 52 D 52 4.074 4 0.065 0.065 4.074 46.905 23.452 LGA A 53 A 53 3.969 1 0.032 0.032 3.969 50.119 40.095 LGA Y 54 Y 54 2.319 8 0.030 0.030 2.319 72.976 24.325 LGA F 55 F 55 3.247 7 0.185 0.185 3.856 54.048 19.654 LGA Q 56 Q 56 4.847 5 0.046 0.046 4.849 35.833 15.926 LGA R 57 R 57 4.187 7 0.116 0.116 4.187 46.905 17.056 LGA V 58 V 58 3.149 3 0.372 0.372 4.188 54.286 31.020 LGA H 59 H 59 1.519 6 0.028 0.028 1.519 79.286 31.714 LGA P 60 P 60 1.808 3 0.032 0.032 1.808 72.857 41.633 LGA D 61 D 61 1.634 4 0.013 0.013 1.710 77.143 38.571 LGA D 62 D 62 1.167 4 0.076 0.076 1.424 83.690 41.845 LGA R 63 R 63 1.276 7 0.094 0.094 2.104 75.119 27.316 LGA A 64 A 64 2.759 1 0.143 0.143 3.315 59.167 47.333 LGA R 65 R 65 0.661 7 0.046 0.046 0.929 90.476 32.900 LGA V 66 V 66 0.926 3 0.050 0.050 0.926 90.476 51.701 LGA R 67 R 67 1.347 7 0.059 0.059 1.493 83.690 30.433 LGA R 68 R 68 1.672 7 0.033 0.033 2.016 72.976 26.537 LGA E 69 E 69 1.341 5 0.053 0.053 1.570 79.286 35.238 LGA L 70 L 70 0.659 4 0.110 0.110 1.787 83.810 41.905 LGA D 71 D 71 2.474 4 0.033 0.033 3.069 61.190 30.595 LGA R 72 R 72 3.057 7 0.022 0.022 3.263 53.571 19.481 LGA H 73 H 73 1.903 6 0.053 0.053 2.087 70.833 28.333 LGA V 74 V 74 1.984 3 0.101 0.101 2.103 70.833 40.476 LGA L 75 L 75 2.532 4 0.069 0.069 3.849 53.810 26.905 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 57 228 228 100.00 468 228 48.72 59 SUMMARY(RMSD_GDC): 2.499 2.456 2.456 66.933 35.724 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 57 59 4.0 52 2.10 71.186 67.076 2.360 LGA_LOCAL RMSD: 2.103 Number of atoms: 52 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.543 Number of assigned atoms: 57 Std_ASGN_ATOMS RMSD: 2.499 Standard rmsd on all 57 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.721009 * X + -0.386197 * Y + -0.575324 * Z + 54.259617 Y_new = -0.688229 * X + -0.495628 * Y + -0.529805 * Z + 140.114075 Z_new = -0.080537 * X + 0.777949 * Y + -0.623144 * Z + 60.417526 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.762142 0.080624 2.246152 [DEG: -43.6675 4.6194 128.6951 ] ZXZ: -0.826563 2.243553 -0.103157 [DEG: -47.3586 128.5461 -5.9105 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0600AL396_1-D1 REMARK 2: T0600-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0600AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 57 59 4.0 52 2.10 67.076 2.50 REMARK ---------------------------------------------------------- MOLECULE T0600AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3h9w_A ATOM 1 N GLY 17 11.518 85.210 34.967 1.00 0.00 N ATOM 2 CA GLY 17 10.940 84.387 36.070 1.00 0.00 C ATOM 3 C GLY 17 11.069 82.905 35.742 1.00 0.00 C ATOM 4 O GLY 17 11.280 82.080 36.632 1.00 0.00 O ATOM 5 N ILE 18 10.936 82.569 34.462 1.00 0.00 N ATOM 6 CA ILE 18 11.056 81.181 34.024 1.00 0.00 C ATOM 7 C ILE 18 12.458 80.687 34.354 1.00 0.00 C ATOM 8 O ILE 18 13.426 81.440 34.279 1.00 0.00 O ATOM 9 N GLY 19 12.565 79.420 34.727 1.00 0.00 N ATOM 10 CA GLY 19 13.851 78.845 35.075 1.00 0.00 C ATOM 11 C GLY 19 14.245 77.813 34.039 1.00 0.00 C ATOM 12 O GLY 19 13.633 76.748 33.948 1.00 0.00 O ATOM 13 N SER 20 15.271 78.119 33.232 1.00 0.00 N ATOM 14 CA SER 20 15.730 77.190 32.202 1.00 0.00 C ATOM 15 C SER 20 16.577 76.079 32.809 1.00 0.00 C ATOM 16 O SER 20 17.256 76.288 33.816 1.00 0.00 O ATOM 17 N TRP 21 16.518 74.898 32.205 1.00 0.00 N ATOM 18 CA TRP 21 17.310 73.768 32.678 1.00 0.00 C ATOM 19 C TRP 21 17.463 72.730 31.572 1.00 0.00 C ATOM 20 O TRP 21 16.710 72.725 30.594 1.00 0.00 O ATOM 21 N VAL 22 18.444 71.853 31.746 1.00 0.00 N ATOM 22 CA VAL 22 18.724 70.788 30.799 1.00 0.00 C ATOM 23 C VAL 22 19.303 69.620 31.573 1.00 0.00 C ATOM 24 O VAL 22 20.078 69.813 32.517 1.00 0.00 O ATOM 25 N LEU 23 18.913 68.416 31.174 1.00 0.00 N ATOM 26 CA LEU 23 19.371 67.185 31.809 1.00 0.00 C ATOM 27 C LEU 23 20.000 66.242 30.789 1.00 0.00 C ATOM 28 O LEU 23 19.425 65.987 29.729 1.00 0.00 O ATOM 29 N HIS 24 21.180 65.727 31.113 1.00 0.00 N ATOM 30 CA HIS 24 21.870 64.777 30.244 1.00 0.00 C ATOM 31 C HIS 24 21.173 63.447 30.506 1.00 0.00 C ATOM 32 O HIS 24 21.225 62.926 31.614 1.00 0.00 O ATOM 33 N MET 25 20.508 62.912 29.490 1.00 0.00 N ATOM 34 CA MET 25 19.767 61.668 29.620 1.00 0.00 C ATOM 35 C MET 25 20.600 60.478 30.095 1.00 0.00 C ATOM 36 O MET 25 20.157 59.704 30.943 1.00 0.00 O ATOM 37 N GLU 26 21.806 60.340 29.557 1.00 0.00 N ATOM 38 CA GLU 26 22.676 59.223 29.920 1.00 0.00 C ATOM 39 C GLU 26 23.055 59.200 31.397 1.00 0.00 C ATOM 40 O GLU 26 22.934 58.171 32.057 1.00 0.00 O ATOM 41 N SER 27 23.510 60.335 31.915 1.00 0.00 N ATOM 42 CA SER 27 23.917 60.427 33.314 1.00 0.00 C ATOM 43 C SER 27 22.791 60.914 34.223 1.00 0.00 C ATOM 44 O SER 27 22.871 60.789 35.448 1.00 0.00 O ATOM 45 N GLY 28 22.085 63.851 34.851 1.00 0.00 N ATOM 46 CA GLY 28 22.598 64.959 35.640 1.00 0.00 C ATOM 47 C GLY 28 22.219 66.281 34.980 1.00 0.00 C ATOM 48 O GLY 28 22.030 66.346 33.766 1.00 0.00 O ATOM 49 N ARG 29 22.100 67.331 35.784 1.00 0.00 N ATOM 50 CA ARG 29 21.760 68.647 35.264 1.00 0.00 C ATOM 51 C ARG 29 22.963 69.254 34.556 1.00 0.00 C ATOM 52 O ARG 29 24.048 69.351 35.130 1.00 0.00 O ATOM 53 N LEU 30 22.768 69.651 33.303 1.00 0.00 N ATOM 54 CA LEU 30 23.829 70.279 32.519 1.00 0.00 C ATOM 55 C LEU 30 23.883 71.729 33.000 1.00 0.00 C ATOM 56 O LEU 30 24.954 72.323 33.154 1.00 0.00 O ATOM 57 N GLU 31 22.706 72.294 33.242 1.00 0.00 N ATOM 58 CA GLU 31 22.605 73.654 33.736 1.00 0.00 C ATOM 59 C GLU 31 21.188 73.900 34.236 1.00 0.00 C ATOM 60 O GLU 31 20.256 73.175 33.884 1.00 0.00 O ATOM 61 N TRP 32 21.053 74.902 35.093 1.00 0.00 N ATOM 62 CA TRP 32 19.763 75.307 35.623 1.00 0.00 C ATOM 63 C TRP 32 19.908 76.771 36.007 1.00 0.00 C ATOM 64 O TRP 32 20.871 77.156 36.667 1.00 0.00 O ATOM 65 N SER 33 18.961 77.585 35.554 1.00 0.00 N ATOM 66 CA SER 33 19.000 79.009 35.828 1.00 0.00 C ATOM 67 C SER 33 19.166 79.415 37.280 1.00 0.00 C ATOM 68 O SER 33 18.668 78.737 38.183 1.00 0.00 O ATOM 69 N GLN 34 19.866 80.530 37.537 1.00 0.00 N ATOM 70 CA GLN 34 20.076 81.001 38.907 1.00 0.00 C ATOM 71 C GLN 34 18.780 81.381 39.613 1.00 0.00 C ATOM 72 O GLN 34 18.734 81.442 40.837 1.00 0.00 O ATOM 73 N ALA 35 17.722 81.623 38.846 1.00 0.00 N ATOM 74 CA ALA 35 16.432 81.987 39.435 1.00 0.00 C ATOM 75 C ALA 35 15.893 80.849 40.315 1.00 0.00 C ATOM 76 O ALA 35 14.995 81.062 41.134 1.00 0.00 O ATOM 77 N VAL 36 16.436 79.643 40.144 1.00 0.00 N ATOM 78 CA VAL 36 15.981 78.494 40.930 1.00 0.00 C ATOM 79 C VAL 36 16.307 78.693 42.410 1.00 0.00 C ATOM 80 O VAL 36 15.629 78.149 43.291 1.00 0.00 O ATOM 81 N HIS 37 17.341 79.483 42.680 1.00 0.00 N ATOM 82 CA HIS 37 17.757 79.744 44.054 1.00 0.00 C ATOM 83 C HIS 37 16.810 80.742 44.713 1.00 0.00 C ATOM 84 O HIS 37 16.390 80.558 45.862 1.00 0.00 O ATOM 85 N ASP 38 16.458 81.797 43.988 1.00 0.00 N ATOM 86 CA ASP 38 15.543 82.789 44.537 1.00 0.00 C ATOM 87 C ASP 38 14.178 82.149 44.774 1.00 0.00 C ATOM 88 O ASP 38 13.510 82.444 45.766 1.00 0.00 O ATOM 89 N ILE 39 13.773 81.263 43.865 1.00 0.00 N ATOM 90 CA ILE 39 12.482 80.601 43.976 1.00 0.00 C ATOM 91 C ILE 39 12.425 79.503 45.043 1.00 0.00 C ATOM 92 O ILE 39 11.528 79.500 45.890 1.00 0.00 O ATOM 93 N PHE 40 13.368 78.569 45.002 1.00 0.00 N ATOM 94 CA PHE 40 13.359 77.457 45.960 1.00 0.00 C ATOM 95 C PHE 40 14.400 77.493 47.082 1.00 0.00 C ATOM 96 O PHE 40 14.462 76.574 47.906 1.00 0.00 O ATOM 97 N GLY 41 15.221 78.539 47.107 1.00 0.00 N ATOM 98 CA GLY 41 16.210 78.689 48.160 1.00 0.00 C ATOM 99 C GLY 41 17.485 77.857 48.140 1.00 0.00 C ATOM 100 O GLY 41 18.534 78.332 48.578 1.00 0.00 O ATOM 101 N THR 42 17.421 76.623 47.658 1.00 0.00 N ATOM 102 CA THR 42 18.620 75.793 47.635 1.00 0.00 C ATOM 103 C THR 42 19.669 76.465 46.756 1.00 0.00 C ATOM 104 O THR 42 19.328 77.114 45.772 1.00 0.00 O ATOM 105 N ASP 43 20.959 76.328 47.106 1.00 0.00 N ATOM 106 CA ASP 43 22.000 76.949 46.282 1.00 0.00 C ATOM 107 C ASP 43 21.866 76.435 44.850 1.00 0.00 C ATOM 108 O ASP 43 21.610 75.253 44.637 1.00 0.00 O ATOM 109 N SER 44 22.023 77.321 43.877 1.00 0.00 N ATOM 110 CA SER 44 21.918 76.925 42.483 1.00 0.00 C ATOM 111 C SER 44 22.817 75.728 42.188 1.00 0.00 C ATOM 112 O SER 44 22.415 74.785 41.503 1.00 0.00 O ATOM 113 N ALA 45 24.031 75.755 42.727 1.00 0.00 N ATOM 114 CA ALA 45 24.962 74.666 42.482 1.00 0.00 C ATOM 115 C ALA 45 24.577 73.327 43.090 1.00 0.00 C ATOM 116 O ALA 45 25.202 72.308 42.783 1.00 0.00 O ATOM 117 N THR 46 23.552 73.319 43.943 1.00 0.00 N ATOM 118 CA THR 46 23.103 72.092 44.605 1.00 0.00 C ATOM 119 C THR 46 22.247 71.197 43.709 1.00 0.00 C ATOM 120 O THR 46 22.005 70.032 44.031 1.00 0.00 O ATOM 121 N PHE 47 21.773 71.742 42.597 1.00 0.00 N ATOM 122 CA PHE 47 20.958 70.960 41.676 1.00 0.00 C ATOM 123 C PHE 47 21.885 70.157 40.776 1.00 0.00 C ATOM 124 O PHE 47 22.231 70.591 39.681 1.00 0.00 O ATOM 125 N ASP 48 22.281 68.979 41.258 1.00 0.00 N ATOM 126 CA ASP 48 23.203 68.100 40.541 1.00 0.00 C ATOM 127 C ASP 48 22.567 67.092 39.586 1.00 0.00 C ATOM 128 O ASP 48 23.078 66.874 38.486 1.00 0.00 O ATOM 129 N ALA 49 21.469 66.466 39.999 1.00 0.00 N ATOM 130 CA ALA 49 20.811 65.480 39.145 1.00 0.00 C ATOM 131 C ALA 49 19.311 65.385 39.377 1.00 0.00 C ATOM 132 O ALA 49 18.744 66.065 40.237 1.00 0.00 O ATOM 133 N ASP 52 18.682 64.501 38.612 1.00 0.00 N ATOM 134 CA ASP 52 17.251 64.275 38.707 1.00 0.00 C ATOM 135 C ASP 52 16.864 63.873 40.121 1.00 0.00 C ATOM 136 O ASP 52 15.756 64.164 40.586 1.00 0.00 O ATOM 137 N ALA 53 17.783 63.206 40.812 1.00 0.00 N ATOM 138 CA ALA 53 17.536 62.767 42.180 1.00 0.00 C ATOM 139 C ALA 53 17.229 63.967 43.070 1.00 0.00 C ATOM 140 O ALA 53 16.372 63.898 43.955 1.00 0.00 O ATOM 141 N TYR 54 17.931 65.072 42.834 1.00 0.00 N ATOM 142 CA TYR 54 17.717 66.289 43.622 1.00 0.00 C ATOM 143 C TYR 54 16.328 66.851 43.325 1.00 0.00 C ATOM 144 O TYR 54 15.614 67.303 44.221 1.00 0.00 O ATOM 145 N PHE 55 15.963 66.827 42.051 1.00 0.00 N ATOM 146 CA PHE 55 14.663 67.310 41.599 1.00 0.00 C ATOM 147 C PHE 55 13.555 66.470 42.235 1.00 0.00 C ATOM 148 O PHE 55 12.554 67.002 42.721 1.00 0.00 O ATOM 149 N GLN 56 13.744 65.153 42.231 1.00 0.00 N ATOM 150 CA GLN 56 12.765 64.224 42.800 1.00 0.00 C ATOM 151 C GLN 56 12.634 64.349 44.318 1.00 0.00 C ATOM 152 O GLN 56 11.544 64.196 44.876 1.00 0.00 O ATOM 153 N ARG 57 13.747 64.622 44.987 1.00 0.00 N ATOM 154 CA ARG 57 13.740 64.756 46.438 1.00 0.00 C ATOM 155 C ARG 57 13.076 66.044 46.913 1.00 0.00 C ATOM 156 O ARG 57 12.322 66.040 47.882 1.00 0.00 O ATOM 157 N VAL 58 13.354 67.140 46.217 1.00 0.00 N ATOM 158 CA VAL 58 12.814 68.449 46.577 1.00 0.00 C ATOM 159 C VAL 58 11.403 68.629 46.033 1.00 0.00 C ATOM 160 O VAL 58 11.115 69.560 45.277 1.00 0.00 O ATOM 161 N HIS 59 6.963 67.668 47.055 1.00 0.00 N ATOM 162 CA HIS 59 5.959 67.257 48.037 1.00 0.00 C ATOM 163 C HIS 59 5.809 65.733 47.978 1.00 0.00 C ATOM 164 O HIS 59 5.840 65.143 46.896 1.00 0.00 O ATOM 165 N PRO 60 5.652 65.070 49.142 1.00 0.00 N ATOM 166 CA PRO 60 5.507 63.610 49.172 1.00 0.00 C ATOM 167 C PRO 60 4.367 63.025 48.337 1.00 0.00 C ATOM 168 O PRO 60 4.515 61.950 47.759 1.00 0.00 O ATOM 169 N ASP 61 3.237 63.721 48.265 1.00 0.00 N ATOM 170 CA ASP 61 2.110 63.219 47.491 1.00 0.00 C ATOM 171 C ASP 61 2.319 63.422 45.993 1.00 0.00 C ATOM 172 O ASP 61 1.625 62.822 45.172 1.00 0.00 O ATOM 173 N ASP 62 3.274 64.275 45.636 1.00 0.00 N ATOM 174 CA ASP 62 3.560 64.521 44.232 1.00 0.00 C ATOM 175 C ASP 62 4.667 63.588 43.762 1.00 0.00 C ATOM 176 O ASP 62 4.674 63.141 42.611 1.00 0.00 O ATOM 177 N ARG 63 5.600 63.276 44.654 1.00 0.00 N ATOM 178 CA ARG 63 6.683 62.369 44.297 1.00 0.00 C ATOM 179 C ARG 63 6.032 61.050 43.906 1.00 0.00 C ATOM 180 O ARG 63 6.581 60.290 43.123 1.00 0.00 O ATOM 181 N ALA 64 4.844 60.808 44.461 1.00 0.00 N ATOM 182 CA ALA 64 4.077 59.585 44.216 1.00 0.00 C ATOM 183 C ALA 64 3.612 59.376 42.775 1.00 0.00 C ATOM 184 O ALA 64 3.155 58.284 42.425 1.00 0.00 O ATOM 185 N ARG 65 3.729 60.400 41.931 1.00 0.00 N ATOM 186 CA ARG 65 3.278 60.251 40.551 1.00 0.00 C ATOM 187 C ARG 65 4.114 60.985 39.512 1.00 0.00 C ATOM 188 O ARG 65 4.277 60.507 38.390 1.00 0.00 O ATOM 189 N VAL 66 4.642 62.145 39.886 1.00 0.00 N ATOM 190 CA VAL 66 5.432 62.958 38.963 1.00 0.00 C ATOM 191 C VAL 66 6.670 62.248 38.418 1.00 0.00 C ATOM 192 O VAL 66 6.934 62.274 37.217 1.00 0.00 O ATOM 193 N ARG 67 7.432 61.619 39.301 1.00 0.00 N ATOM 194 CA ARG 67 8.631 60.920 38.877 1.00 0.00 C ATOM 195 C ARG 67 8.310 59.835 37.849 1.00 0.00 C ATOM 196 O ARG 67 8.912 59.793 36.775 1.00 0.00 O ATOM 197 N ARG 68 7.351 58.969 38.159 1.00 0.00 N ATOM 198 CA ARG 68 6.985 57.896 37.233 1.00 0.00 C ATOM 199 C ARG 68 6.452 58.426 35.906 1.00 0.00 C ATOM 200 O ARG 68 6.778 57.900 34.842 1.00 0.00 O ATOM 201 N GLU 69 5.624 59.462 35.974 1.00 0.00 N ATOM 202 CA GLU 69 5.063 60.056 34.772 1.00 0.00 C ATOM 203 C GLU 69 6.188 60.608 33.889 1.00 0.00 C ATOM 204 O GLU 69 6.300 60.249 32.718 1.00 0.00 O ATOM 205 N LEU 70 7.042 61.456 34.450 1.00 0.00 N ATOM 206 CA LEU 70 8.123 62.034 33.654 1.00 0.00 C ATOM 207 C LEU 70 9.072 60.992 33.069 1.00 0.00 C ATOM 208 O LEU 70 9.511 61.118 31.927 1.00 0.00 O ATOM 209 N ASP 71 9.385 59.964 33.848 1.00 0.00 N ATOM 210 CA ASP 71 10.259 58.903 33.375 1.00 0.00 C ATOM 211 C ASP 71 9.640 58.205 32.165 1.00 0.00 C ATOM 212 O ASP 71 10.282 58.044 31.126 1.00 0.00 O ATOM 213 N ARG 72 8.384 57.801 32.306 1.00 0.00 N ATOM 214 CA ARG 72 7.671 57.112 31.235 1.00 0.00 C ATOM 215 C ARG 72 7.601 57.941 29.955 1.00 0.00 C ATOM 216 O ARG 72 7.866 57.437 28.866 1.00 0.00 O ATOM 217 N HIS 73 7.240 59.213 30.082 1.00 0.00 N ATOM 218 CA HIS 73 7.138 60.080 28.917 1.00 0.00 C ATOM 219 C HIS 73 8.489 60.346 28.267 1.00 0.00 C ATOM 220 O HIS 73 8.601 60.366 27.038 1.00 0.00 O ATOM 221 N VAL 74 9.512 60.549 29.090 1.00 0.00 N ATOM 222 CA VAL 74 10.855 60.802 28.581 1.00 0.00 C ATOM 223 C VAL 74 11.382 59.600 27.796 1.00 0.00 C ATOM 224 O VAL 74 11.894 59.752 26.687 1.00 0.00 O ATOM 225 N LEU 75 11.251 58.410 28.371 1.00 0.00 N ATOM 226 CA LEU 75 11.713 57.192 27.716 1.00 0.00 C ATOM 227 C LEU 75 11.019 56.998 26.371 1.00 0.00 C ATOM 228 O LEU 75 11.600 56.444 25.440 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 228 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 36.82 81.8 110 94.8 116 ARMSMC SECONDARY STRUCTURE . . 29.23 90.8 65 95.6 68 ARMSMC SURFACE . . . . . . . . 29.78 86.2 87 94.6 92 ARMSMC BURIED . . . . . . . . 55.93 65.2 23 95.8 24 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 45 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 31 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 30 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 27 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.50 (Number of atoms: 57) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.50 57 96.6 59 CRMSCA CRN = ALL/NP . . . . . 0.0438 CRMSCA SECONDARY STRUCTURE . . 2.44 33 97.1 34 CRMSCA SURFACE . . . . . . . . 2.40 45 95.7 47 CRMSCA BURIED . . . . . . . . 2.83 12 100.0 12 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.46 228 78.4 291 CRMSMC SECONDARY STRUCTURE . . 2.30 132 77.6 170 CRMSMC SURFACE . . . . . . . . 2.39 180 77.6 232 CRMSMC BURIED . . . . . . . . 2.69 48 81.4 59 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 248 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 210 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 177 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 206 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 42 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.46 228 47.1 484 CRMSALL SECONDARY STRUCTURE . . 2.30 132 42.2 313 CRMSALL SURFACE . . . . . . . . 2.39 180 45.7 394 CRMSALL BURIED . . . . . . . . 2.69 48 53.3 90 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.089 1.000 0.500 57 96.6 59 ERRCA SECONDARY STRUCTURE . . 2.127 1.000 0.500 33 97.1 34 ERRCA SURFACE . . . . . . . . 1.969 1.000 0.500 45 95.7 47 ERRCA BURIED . . . . . . . . 2.538 1.000 0.500 12 100.0 12 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.058 1.000 0.500 228 78.4 291 ERRMC SECONDARY STRUCTURE . . 2.022 1.000 0.500 132 77.6 170 ERRMC SURFACE . . . . . . . . 1.971 1.000 0.500 180 77.6 232 ERRMC BURIED . . . . . . . . 2.386 1.000 0.500 48 81.4 59 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 248 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 210 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 177 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 206 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 42 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.058 1.000 0.500 228 47.1 484 ERRALL SECONDARY STRUCTURE . . 2.022 1.000 0.500 132 42.2 313 ERRALL SURFACE . . . . . . . . 1.971 1.000 0.500 180 45.7 394 ERRALL BURIED . . . . . . . . 2.386 1.000 0.500 48 53.3 90 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 16 29 41 55 57 57 59 DISTCA CA (P) 27.12 49.15 69.49 93.22 96.61 59 DISTCA CA (RMS) 0.62 1.05 1.57 2.34 2.50 DISTCA ALL (N) 63 119 169 223 228 228 484 DISTALL ALL (P) 13.02 24.59 34.92 46.07 47.11 484 DISTALL ALL (RMS) 0.63 1.11 1.60 2.35 2.46 DISTALL END of the results output