####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 106 ( 424), selected 103 , name T0600AL396_1 # Molecule2: number of CA atoms 106 ( 873), selected 103 , name T0600.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0600AL396_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 63 17 - 81 4.54 25.12 LCS_AVERAGE: 55.04 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 77 - 122 1.64 33.83 LCS_AVERAGE: 31.23 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 81 - 121 0.99 33.98 LCS_AVERAGE: 22.08 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 103 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 17 G 17 12 29 63 9 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT I 18 I 18 12 29 63 9 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT G 19 G 19 12 29 63 9 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT S 20 S 20 12 29 63 9 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT W 21 W 21 12 29 63 9 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT V 22 V 22 12 29 63 9 21 29 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT L 23 L 23 12 29 63 8 21 29 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT H 24 H 24 12 29 63 9 21 29 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT M 25 M 25 12 29 63 9 19 29 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT E 26 E 26 12 29 63 9 21 29 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT S 27 S 27 12 29 63 9 21 29 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT G 28 G 28 12 29 63 3 3 20 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT R 29 R 29 4 29 63 3 3 4 7 33 44 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT L 30 L 30 6 29 63 3 6 10 17 22 39 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT E 31 E 31 6 29 63 3 13 29 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT W 32 W 32 12 29 63 7 21 29 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT S 33 S 33 12 29 63 9 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT Q 34 Q 34 12 29 63 8 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT A 35 A 35 12 29 63 5 15 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT V 36 V 36 12 29 63 5 12 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT H 37 H 37 12 29 63 5 6 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT D 38 D 38 12 29 63 5 8 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT I 39 I 39 12 29 63 6 8 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT F 40 F 40 12 29 63 6 8 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT G 41 G 41 12 29 63 6 15 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT T 42 T 42 12 29 63 3 20 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT D 43 D 43 12 29 63 7 21 29 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT S 44 S 44 12 29 63 4 7 16 29 40 44 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT A 45 A 45 9 29 63 4 7 11 14 21 30 43 51 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT T 46 T 46 9 19 63 4 5 10 14 17 28 37 49 55 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT F 47 F 47 5 19 63 3 5 6 11 17 28 41 48 55 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT D 48 D 48 5 19 63 3 6 13 23 35 40 47 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT A 49 A 49 3 19 63 3 3 7 12 14 37 44 51 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT D 52 D 52 7 9 63 5 7 7 13 29 41 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT A 53 A 53 7 9 63 5 7 11 21 35 40 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT Y 54 Y 54 7 9 63 5 7 18 35 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT F 55 F 55 7 9 63 5 7 11 18 34 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT Q 56 Q 56 7 9 63 5 7 13 20 29 37 44 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT R 57 R 57 7 20 63 4 7 7 10 18 34 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT V 58 V 58 7 21 63 4 12 20 30 41 44 49 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT H 59 H 59 17 21 63 6 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT P 60 P 60 17 21 63 6 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT D 61 D 61 17 21 63 6 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT D 62 D 62 17 21 63 9 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT R 63 R 63 17 21 63 9 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT A 64 A 64 17 21 63 3 3 15 31 42 44 49 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT R 65 R 65 17 21 63 10 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT V 66 V 66 17 21 63 10 21 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT R 67 R 67 17 21 63 10 15 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT R 68 R 68 17 21 63 10 14 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT E 69 E 69 17 21 63 10 14 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT L 70 L 70 17 21 63 10 20 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT D 71 D 71 17 21 63 10 14 30 37 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT R 72 R 72 17 21 63 10 14 22 33 42 45 49 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT H 73 H 73 17 21 63 10 14 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT V 74 V 74 17 21 63 10 14 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT L 75 L 75 17 21 63 3 14 30 38 42 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT G 76 G 76 12 25 63 3 4 14 27 41 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT D 77 D 77 10 45 63 3 9 15 19 25 29 36 41 44 54 56 59 62 62 64 64 65 66 68 69 LCS_GDT R 78 R 78 13 45 63 4 14 22 35 40 44 44 48 54 57 59 61 62 62 64 64 65 66 68 69 LCS_GDT P 79 P 79 27 45 63 4 19 33 39 43 44 44 44 44 45 45 45 46 53 58 62 65 66 68 69 LCS_GDT F 80 F 80 28 45 63 10 21 36 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 56 65 LCS_GDT D 81 D 81 40 45 63 8 28 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT V 82 V 82 40 45 51 9 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT E 83 E 83 40 45 51 9 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT Y 84 Y 84 40 45 51 9 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT R 85 R 85 40 45 51 9 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT I 86 I 86 40 45 51 4 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT V 87 V 87 40 45 51 4 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT R 88 R 88 40 45 51 13 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT P 89 P 89 40 45 51 5 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT D 90 D 90 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT G 91 G 91 40 45 51 5 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT Q 92 Q 92 40 45 51 5 20 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT V 93 V 93 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT R 94 R 94 40 45 51 13 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT E 95 E 95 40 45 51 10 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT L 96 L 96 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT L 97 L 97 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT E 98 E 98 40 45 51 10 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT R 99 R 99 40 45 51 10 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT N 100 N 100 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT H 101 H 101 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT I 102 I 102 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 51 61 65 68 69 LCS_GDT Q 103 Q 103 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 64 69 LCS_GDT R 104 R 104 40 45 51 13 30 37 41 43 44 44 44 44 45 45 55 59 61 64 64 65 66 68 69 LCS_GDT Q 105 Q 105 40 45 51 10 28 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 65 68 69 LCS_GDT A 106 A 106 40 45 51 9 10 34 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 66 LCS_GDT S 107 S 107 40 45 51 9 12 34 41 43 44 44 44 44 45 45 45 48 50 58 64 65 66 68 69 LCS_GDT G 108 G 108 40 45 51 9 10 21 41 43 44 44 44 51 57 60 61 62 62 64 64 65 66 68 69 LCS_GDT Q 109 Q 109 40 45 51 9 12 37 41 43 45 50 53 55 59 60 61 62 62 64 64 65 66 68 69 LCS_GDT V 110 V 110 40 45 51 9 27 37 41 43 44 44 44 44 45 45 53 58 61 64 64 65 66 68 69 LCS_GDT D 111 D 111 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 53 65 LCS_GDT H 112 H 112 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT L 113 L 113 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT W 114 W 114 40 45 51 13 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT G 115 G 115 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT T 116 T 116 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT I 118 I 118 40 45 51 14 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT D 119 D 119 40 45 51 11 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT M 120 M 120 40 45 51 10 30 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT T 121 T 121 40 45 51 6 19 37 41 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_GDT E 122 E 122 36 45 51 3 10 29 39 43 44 44 44 44 45 45 45 46 47 47 49 49 49 49 50 LCS_AVERAGE LCS_A: 36.12 ( 22.08 31.23 55.04 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 30 37 41 43 45 50 53 56 59 60 61 62 62 64 64 65 66 68 69 GDT PERCENT_AT 13.21 28.30 34.91 38.68 40.57 42.45 47.17 50.00 52.83 55.66 56.60 57.55 58.49 58.49 60.38 60.38 61.32 62.26 64.15 65.09 GDT RMS_LOCAL 8.46 0.63 0.82 1.04 1.14 1.73 2.09 2.15 2.38 2.60 2.78 2.86 3.01 3.01 3.47 3.47 3.67 3.90 4.43 4.71 GDT RMS_ALL_AT 33.98 33.97 34.00 33.95 33.94 25.54 25.58 25.59 25.67 25.71 25.71 25.67 25.67 25.67 25.57 25.57 25.56 25.45 25.33 25.26 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 17 G 17 1.247 0 0.463 0.463 3.598 71.905 71.905 LGA I 18 I 18 0.912 4 0.105 0.105 1.065 90.595 45.298 LGA G 19 G 19 0.554 0 0.102 0.102 0.949 90.476 90.476 LGA S 20 S 20 0.585 2 0.031 0.031 0.585 92.857 61.905 LGA W 21 W 21 0.550 10 0.052 0.052 0.550 92.857 26.531 LGA V 22 V 22 0.673 3 0.117 0.117 0.673 92.857 53.061 LGA L 23 L 23 0.666 4 0.017 0.017 0.755 90.476 45.238 LGA H 24 H 24 0.906 6 0.060 0.060 1.341 85.952 34.381 LGA M 25 M 25 1.401 4 0.076 0.076 2.235 75.119 37.560 LGA E 26 E 26 1.326 5 0.081 0.081 2.091 75.119 33.386 LGA S 27 S 27 1.740 2 0.045 0.045 2.093 72.976 48.651 LGA G 28 G 28 2.090 0 0.644 0.644 3.257 63.095 63.095 LGA R 29 R 29 3.448 7 0.072 0.072 3.448 55.476 20.173 LGA L 30 L 30 4.056 4 0.594 0.594 4.203 43.571 21.786 LGA E 31 E 31 1.515 5 0.123 0.123 2.213 79.643 35.397 LGA W 32 W 32 0.977 10 0.113 0.113 0.977 90.476 25.850 LGA S 33 S 33 0.280 2 0.045 0.045 0.515 97.619 65.079 LGA Q 34 Q 34 0.543 5 0.076 0.076 1.031 90.595 40.265 LGA A 35 A 35 1.211 1 0.140 0.140 1.370 83.690 66.952 LGA V 36 V 36 1.811 3 0.093 0.093 1.964 72.857 41.633 LGA H 37 H 37 2.176 6 0.026 0.026 2.456 64.762 25.905 LGA D 38 D 38 1.842 4 0.019 0.019 2.067 70.833 35.417 LGA I 39 I 39 1.901 4 0.041 0.041 2.205 70.833 35.417 LGA F 40 F 40 1.993 7 0.102 0.102 1.993 75.000 27.273 LGA G 41 G 41 1.261 0 0.266 0.266 1.521 81.548 81.548 LGA T 42 T 42 1.129 3 0.099 0.099 1.712 79.286 45.306 LGA D 43 D 43 1.395 4 0.123 0.123 2.937 71.190 35.595 LGA S 44 S 44 2.793 2 0.070 0.070 4.274 50.595 33.730 LGA A 45 A 45 5.190 1 0.047 0.047 6.313 25.476 20.381 LGA T 46 T 46 5.715 3 0.128 0.128 6.278 21.548 12.313 LGA F 47 F 47 5.677 7 0.101 0.101 5.677 26.310 9.567 LGA D 48 D 48 4.302 4 0.619 0.619 5.361 31.548 15.774 LGA A 49 A 49 5.075 1 0.198 0.198 5.359 28.810 23.048 LGA D 52 D 52 4.066 4 0.065 0.065 4.066 46.905 23.452 LGA A 53 A 53 3.992 1 0.032 0.032 3.992 50.119 40.095 LGA Y 54 Y 54 2.323 8 0.030 0.030 2.323 72.976 24.325 LGA F 55 F 55 3.210 7 0.185 0.185 3.816 54.048 19.654 LGA Q 56 Q 56 4.801 5 0.046 0.046 4.801 37.500 16.667 LGA R 57 R 57 4.175 7 0.116 0.116 4.175 46.905 17.056 LGA V 58 V 58 3.194 3 0.372 0.372 4.179 54.286 31.020 LGA H 59 H 59 1.527 6 0.028 0.028 1.527 79.286 31.714 LGA P 60 P 60 1.801 3 0.032 0.032 1.801 72.857 41.633 LGA D 61 D 61 1.560 4 0.013 0.013 1.662 77.143 38.571 LGA D 62 D 62 1.160 4 0.076 0.076 1.406 83.690 41.845 LGA R 63 R 63 1.340 7 0.094 0.094 2.215 75.119 27.316 LGA A 64 A 64 2.892 1 0.143 0.143 3.475 59.167 47.333 LGA R 65 R 65 0.761 7 0.046 0.046 1.064 88.214 32.078 LGA V 66 V 66 1.035 3 0.050 0.050 1.035 88.214 50.408 LGA R 67 R 67 1.428 7 0.059 0.059 1.525 79.286 28.831 LGA R 68 R 68 1.684 7 0.033 0.033 1.986 75.000 27.273 LGA E 69 E 69 1.373 5 0.053 0.053 1.586 79.286 35.238 LGA L 70 L 70 0.766 4 0.110 0.110 1.733 83.810 41.905 LGA D 71 D 71 2.420 4 0.033 0.033 2.965 62.976 31.488 LGA R 72 R 72 2.961 7 0.022 0.022 3.148 55.357 20.130 LGA H 73 H 73 1.849 6 0.053 0.053 2.024 70.833 28.333 LGA V 74 V 74 1.878 3 0.101 0.101 1.955 72.857 41.633 LGA L 75 L 75 2.341 4 0.069 0.069 3.588 57.500 28.750 LGA G 76 G 76 3.754 0 0.675 0.675 4.620 45.476 45.476 LGA D 77 D 77 8.377 4 0.444 0.444 8.596 6.190 3.095 LGA R 78 R 78 5.794 7 0.167 0.167 9.133 11.190 4.069 LGA P 79 P 79 12.024 3 0.114 0.114 12.024 0.238 0.136 LGA F 80 F 80 15.196 7 0.062 0.062 19.429 0.000 0.000 LGA D 81 D 81 21.844 4 0.092 0.092 23.288 0.000 0.000 LGA V 82 V 82 27.755 3 0.055 0.055 31.301 0.000 0.000 LGA E 83 E 83 34.034 5 0.049 0.049 36.196 0.000 0.000 LGA Y 84 Y 84 40.623 8 0.039 0.039 43.358 0.000 0.000 LGA R 85 R 85 48.050 7 0.132 0.132 48.910 0.000 0.000 LGA I 86 I 86 50.936 4 0.078 0.078 55.128 0.000 0.000 LGA V 87 V 87 58.069 3 0.044 0.044 59.316 0.000 0.000 LGA R 88 R 88 62.538 7 0.034 0.034 65.229 0.000 0.000 LGA P 89 P 89 67.730 3 0.016 0.016 71.464 0.000 0.000 LGA D 90 D 90 73.092 4 0.108 0.108 74.163 0.000 0.000 LGA G 91 G 91 70.030 0 0.079 0.079 70.479 0.000 0.000 LGA Q 92 Q 92 66.538 5 0.103 0.103 68.071 0.000 0.000 LGA V 93 V 93 59.417 3 0.087 0.087 62.225 0.000 0.000 LGA R 94 R 94 54.174 7 0.056 0.056 55.773 0.000 0.000 LGA E 95 E 95 47.242 5 0.013 0.013 50.082 0.000 0.000 LGA L 96 L 96 42.354 4 0.047 0.047 43.912 0.000 0.000 LGA L 97 L 97 35.109 4 0.031 0.031 38.012 0.000 0.000 LGA E 98 E 98 31.845 5 0.056 0.056 32.702 0.000 0.000 LGA R 99 R 99 26.174 7 0.041 0.041 28.686 0.000 0.000 LGA N 100 N 100 22.050 4 0.028 0.028 22.977 0.000 0.000 LGA H 101 H 101 18.889 6 0.064 0.064 20.511 0.000 0.000 LGA I 102 I 102 14.529 4 0.026 0.026 15.624 0.000 0.000 LGA Q 103 Q 103 16.831 5 0.117 0.117 16.831 0.000 0.000 LGA R 104 R 104 12.692 7 0.024 0.024 16.728 0.000 0.000 LGA Q 105 Q 105 15.728 5 0.042 0.042 15.728 0.000 0.000 LGA A 106 A 106 18.116 1 0.140 0.140 18.116 0.000 0.000 LGA S 107 S 107 12.239 2 0.149 0.149 14.021 0.119 0.079 LGA G 108 G 108 8.770 0 0.108 0.108 10.390 12.857 12.857 LGA Q 109 Q 109 4.777 5 0.036 0.036 9.261 16.071 7.143 LGA V 110 V 110 9.674 3 0.029 0.029 12.036 2.619 1.497 LGA D 111 D 111 16.212 4 0.121 0.121 19.987 0.000 0.000 LGA H 112 H 112 20.971 6 0.027 0.027 20.971 0.000 0.000 LGA L 113 L 113 22.303 4 0.113 0.113 26.956 0.000 0.000 LGA W 114 W 114 27.650 10 0.109 0.109 27.710 0.000 0.000 LGA G 115 G 115 30.252 0 0.036 0.036 34.991 0.000 0.000 LGA T 116 T 116 35.470 3 0.055 0.055 35.674 0.000 0.000 LGA I 118 I 118 41.439 4 0.052 0.052 42.922 0.000 0.000 LGA D 119 D 119 47.099 4 0.076 0.076 47.099 0.000 0.000 LGA M 120 M 120 44.472 4 0.197 0.197 46.513 0.000 0.000 LGA T 121 T 121 50.979 3 0.141 0.141 52.224 0.000 0.000 LGA E 122 E 122 51.048 5 0.528 0.528 51.048 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 103 412 412 100.00 850 412 48.47 106 SUMMARY(RMSD_GDC): 19.510 19.463 19.463 37.963 20.481 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 106 106 4.0 53 2.15 44.340 42.552 2.355 LGA_LOCAL RMSD: 2.151 Number of atoms: 53 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 25.593 Number of assigned atoms: 103 Std_ASGN_ATOMS RMSD: 19.510 Standard rmsd on all 103 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.717841 * X + -0.379750 * Y + -0.583519 * Z + 54.663422 Y_new = -0.691050 * X + -0.490480 * Y + -0.530923 * Z + 140.055740 Z_new = -0.084586 * X + 0.784359 * Y + -0.614513 * Z + 59.676872 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.766385 0.084688 2.235369 [DEG: -43.9106 4.8522 128.0772 ] ZXZ: -0.832558 2.232564 -0.107426 [DEG: -47.7021 127.9165 -6.1551 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0600AL396_1 REMARK 2: T0600.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0600AL396_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 106 106 4.0 53 2.15 42.552 19.51 REMARK ---------------------------------------------------------- MOLECULE T0600AL396_1 REMARK Aligment from pdb entry: 3h9w_A ATOM 1 N GLY 17 11.477 85.172 34.944 1.00 0.00 ATOM 2 CA GLY 17 10.908 84.356 36.057 1.00 0.00 ATOM 3 C GLY 17 11.029 82.872 35.734 1.00 0.00 ATOM 4 O GLY 17 11.247 82.050 36.626 1.00 0.00 ATOM 5 N ILE 18 10.882 82.530 34.457 1.00 0.00 ATOM 6 CA ILE 18 10.993 81.140 34.025 1.00 0.00 ATOM 7 C ILE 18 12.396 80.643 34.343 1.00 0.00 ATOM 8 O ILE 18 13.365 81.391 34.254 1.00 0.00 ATOM 9 N GLY 19 12.502 79.377 34.721 1.00 0.00 ATOM 10 CA GLY 19 13.790 78.799 35.059 1.00 0.00 ATOM 11 C GLY 19 14.171 77.761 34.024 1.00 0.00 ATOM 12 O GLY 19 13.554 76.698 33.945 1.00 0.00 ATOM 13 N SER 20 15.189 78.059 33.205 1.00 0.00 ATOM 14 CA SER 20 15.633 77.124 32.175 1.00 0.00 ATOM 15 C SER 20 16.484 76.013 32.778 1.00 0.00 ATOM 16 O SER 20 17.174 76.224 33.777 1.00 0.00 ATOM 17 N TRP 21 16.414 74.829 32.181 1.00 0.00 ATOM 18 CA TRP 21 17.207 73.699 32.652 1.00 0.00 ATOM 19 C TRP 21 17.345 72.655 31.549 1.00 0.00 ATOM 20 O TRP 21 16.582 72.648 30.578 1.00 0.00 ATOM 21 N VAL 22 18.325 71.776 31.717 1.00 0.00 ATOM 22 CA VAL 22 18.591 70.705 30.772 1.00 0.00 ATOM 23 C VAL 22 19.175 69.539 31.547 1.00 0.00 ATOM 24 O VAL 22 19.961 69.734 32.482 1.00 0.00 ATOM 25 N LEU 23 18.777 68.334 31.157 1.00 0.00 ATOM 26 CA LEU 23 19.237 67.104 31.794 1.00 0.00 ATOM 27 C LEU 23 19.853 66.155 30.771 1.00 0.00 ATOM 28 O LEU 23 19.266 65.897 29.719 1.00 0.00 ATOM 29 N HIS 24 21.034 65.637 31.086 1.00 0.00 ATOM 30 CA HIS 24 21.712 64.680 30.215 1.00 0.00 ATOM 31 C HIS 24 21.014 63.354 30.491 1.00 0.00 ATOM 32 O HIS 24 21.075 62.838 31.601 1.00 0.00 ATOM 33 N MET 25 20.336 62.817 29.484 1.00 0.00 ATOM 34 CA MET 25 19.592 61.576 29.628 1.00 0.00 ATOM 35 C MET 25 20.426 60.386 30.100 1.00 0.00 ATOM 36 O MET 25 19.990 59.617 30.957 1.00 0.00 ATOM 37 N GLU 26 21.626 60.240 29.550 1.00 0.00 ATOM 38 CA GLU 26 22.496 59.122 29.910 1.00 0.00 ATOM 39 C GLU 26 22.891 59.106 31.384 1.00 0.00 ATOM 40 O GLU 26 22.773 58.080 32.049 1.00 0.00 ATOM 41 N SER 27 23.354 60.241 31.891 1.00 0.00 ATOM 42 CA SER 27 23.777 60.339 33.285 1.00 0.00 ATOM 43 C SER 27 22.661 60.835 34.204 1.00 0.00 ATOM 44 O SER 27 22.753 60.715 35.428 1.00 0.00 ATOM 45 N GLY 28 21.972 63.777 34.824 1.00 0.00 ATOM 46 CA GLY 28 22.497 64.887 35.602 1.00 0.00 ATOM 47 C GLY 28 22.115 66.207 34.940 1.00 0.00 ATOM 48 O GLY 28 21.914 66.266 33.727 1.00 0.00 ATOM 49 N ARG 29 22.008 67.261 35.740 1.00 0.00 ATOM 50 CA ARG 29 21.667 68.576 35.217 1.00 0.00 ATOM 51 C ARG 29 22.865 69.175 34.493 1.00 0.00 ATOM 52 O ARG 29 23.955 69.271 35.056 1.00 0.00 ATOM 53 N LEU 30 22.658 69.566 33.240 1.00 0.00 ATOM 54 CA LEU 30 23.713 70.187 32.442 1.00 0.00 ATOM 55 C LEU 30 23.777 71.640 32.915 1.00 0.00 ATOM 56 O LEU 30 24.851 72.231 33.055 1.00 0.00 ATOM 57 N GLU 31 22.604 72.210 33.167 1.00 0.00 ATOM 58 CA GLU 31 22.512 73.572 33.655 1.00 0.00 ATOM 59 C GLU 31 21.102 73.826 34.169 1.00 0.00 ATOM 60 O GLU 31 20.164 73.102 33.829 1.00 0.00 ATOM 61 N TRP 32 20.979 74.832 35.022 1.00 0.00 ATOM 62 CA TRP 32 19.696 75.244 35.563 1.00 0.00 ATOM 63 C TRP 32 19.850 76.709 35.938 1.00 0.00 ATOM 64 O TRP 32 20.821 77.094 36.586 1.00 0.00 ATOM 65 N SER 33 18.901 77.524 35.491 1.00 0.00 ATOM 66 CA SER 33 18.948 78.950 35.758 1.00 0.00 ATOM 67 C SER 33 19.130 79.363 37.205 1.00 0.00 ATOM 68 O SER 33 18.639 78.691 38.117 1.00 0.00 ATOM 69 N GLN 34 19.836 80.477 37.450 1.00 0.00 ATOM 70 CA GLN 34 20.062 80.953 38.816 1.00 0.00 ATOM 71 C GLN 34 18.775 81.342 39.533 1.00 0.00 ATOM 72 O GLN 34 18.741 81.408 40.757 1.00 0.00 ATOM 73 N ALA 35 17.710 81.583 38.776 1.00 0.00 ATOM 74 CA ALA 35 16.427 81.954 39.376 1.00 0.00 ATOM 75 C ALA 35 15.893 80.822 40.268 1.00 0.00 ATOM 76 O ALA 35 15.005 81.043 41.095 1.00 0.00 ATOM 77 N VAL 36 16.431 79.613 40.097 1.00 0.00 ATOM 78 CA VAL 36 15.979 78.470 40.893 1.00 0.00 ATOM 79 C VAL 36 16.322 78.675 42.368 1.00 0.00 ATOM 80 O VAL 36 15.652 78.137 43.259 1.00 0.00 ATOM 81 N HIS 37 17.361 79.463 42.624 1.00 0.00 ATOM 82 CA HIS 37 17.793 79.729 43.992 1.00 0.00 ATOM 83 C HIS 37 16.856 80.734 44.656 1.00 0.00 ATOM 84 O HIS 37 16.447 80.557 45.810 1.00 0.00 ATOM 85 N ASP 38 16.499 81.787 43.929 1.00 0.00 ATOM 86 CA ASP 38 15.594 82.784 44.483 1.00 0.00 ATOM 87 C ASP 38 14.229 82.150 44.738 1.00 0.00 ATOM 88 O ASP 38 13.572 82.453 45.735 1.00 0.00 ATOM 89 N ILE 39 13.812 81.261 43.837 1.00 0.00 ATOM 90 CA ILE 39 12.520 80.603 43.964 1.00 0.00 ATOM 91 C ILE 39 12.470 79.512 45.037 1.00 0.00 ATOM 92 O ILE 39 11.582 79.516 45.894 1.00 0.00 ATOM 93 N PHE 40 13.410 78.574 44.991 1.00 0.00 ATOM 94 CA PHE 40 13.407 77.467 45.955 1.00 0.00 ATOM 95 C PHE 40 14.460 77.504 47.066 1.00 0.00 ATOM 96 O PHE 40 14.526 76.590 47.894 1.00 0.00 ATOM 97 N GLY 41 15.284 78.548 47.077 1.00 0.00 ATOM 98 CA GLY 41 16.285 78.700 48.120 1.00 0.00 ATOM 99 C GLY 41 17.557 77.864 48.090 1.00 0.00 ATOM 100 O GLY 41 18.611 78.337 48.515 1.00 0.00 ATOM 101 N THR 42 17.484 76.628 47.615 1.00 0.00 ATOM 102 CA THR 42 18.680 75.793 47.584 1.00 0.00 ATOM 103 C THR 42 19.721 76.457 46.690 1.00 0.00 ATOM 104 O THR 42 19.373 77.103 45.706 1.00 0.00 ATOM 105 N ASP 43 21.014 76.318 47.028 1.00 0.00 ATOM 106 CA ASP 43 22.049 76.931 46.190 1.00 0.00 ATOM 107 C ASP 43 21.898 76.411 44.762 1.00 0.00 ATOM 108 O ASP 43 21.637 75.228 44.558 1.00 0.00 ATOM 109 N SER 44 22.048 77.291 43.783 1.00 0.00 ATOM 110 CA SER 44 21.927 76.889 42.392 1.00 0.00 ATOM 111 C SER 44 22.819 75.687 42.094 1.00 0.00 ATOM 112 O SER 44 22.407 74.742 41.418 1.00 0.00 ATOM 113 N ALA 45 24.038 75.713 42.620 1.00 0.00 ATOM 114 CA ALA 45 24.963 74.619 42.371 1.00 0.00 ATOM 115 C ALA 45 24.580 73.285 42.989 1.00 0.00 ATOM 116 O ALA 45 25.199 72.263 42.682 1.00 0.00 ATOM 117 N THR 46 23.565 73.284 43.853 1.00 0.00 ATOM 118 CA THR 46 23.118 72.062 44.526 1.00 0.00 ATOM 119 C THR 46 22.250 71.166 43.643 1.00 0.00 ATOM 120 O THR 46 22.007 70.004 43.973 1.00 0.00 ATOM 121 N PHE 47 21.766 71.707 42.534 1.00 0.00 ATOM 122 CA PHE 47 20.940 70.923 41.625 1.00 0.00 ATOM 123 C PHE 47 21.854 70.112 40.720 1.00 0.00 ATOM 124 O PHE 47 22.190 70.540 39.619 1.00 0.00 ATOM 125 N ASP 48 22.251 68.936 41.203 1.00 0.00 ATOM 126 CA ASP 48 23.163 68.050 40.481 1.00 0.00 ATOM 127 C ASP 48 22.513 67.039 39.538 1.00 0.00 ATOM 128 O ASP 48 23.012 66.814 38.434 1.00 0.00 ATOM 129 N ALA 49 21.418 66.419 39.965 1.00 0.00 ATOM 130 CA ALA 49 20.748 65.431 39.123 1.00 0.00 ATOM 131 C ALA 49 19.250 65.342 39.371 1.00 0.00 ATOM 132 O ALA 49 18.694 66.029 40.233 1.00 0.00 ATOM 133 N ASP 52 18.610 64.456 38.616 1.00 0.00 ATOM 134 CA ASP 52 17.179 64.236 38.727 1.00 0.00 ATOM 135 C ASP 52 16.805 63.842 40.148 1.00 0.00 ATOM 136 O ASP 52 15.704 64.139 40.622 1.00 0.00 ATOM 137 N ALA 53 17.729 63.176 40.833 1.00 0.00 ATOM 138 CA ALA 53 17.495 62.744 42.205 1.00 0.00 ATOM 139 C ALA 53 17.201 63.950 43.092 1.00 0.00 ATOM 140 O ALA 53 16.354 63.888 43.986 1.00 0.00 ATOM 141 N TYR 54 17.904 65.051 42.843 1.00 0.00 ATOM 142 CA TYR 54 17.703 66.273 43.627 1.00 0.00 ATOM 143 C TYR 54 16.313 66.838 43.342 1.00 0.00 ATOM 144 O TYR 54 15.610 67.297 44.243 1.00 0.00 ATOM 145 N PHE 55 15.934 66.809 42.072 1.00 0.00 ATOM 146 CA PHE 55 14.631 67.294 41.631 1.00 0.00 ATOM 147 C PHE 55 13.527 66.461 42.283 1.00 0.00 ATOM 148 O PHE 55 12.533 66.999 42.776 1.00 0.00 ATOM 149 N GLN 56 13.712 65.143 42.284 1.00 0.00 ATOM 150 CA GLN 56 12.736 64.220 42.867 1.00 0.00 ATOM 151 C GLN 56 12.621 64.354 44.386 1.00 0.00 ATOM 152 O GLN 56 11.536 64.207 44.955 1.00 0.00 ATOM 153 N ARG 57 13.742 64.626 45.042 1.00 0.00 ATOM 154 CA ARG 57 13.750 64.767 46.493 1.00 0.00 ATOM 155 C ARG 57 13.096 66.060 46.967 1.00 0.00 ATOM 156 O ARG 57 12.352 66.063 47.944 1.00 0.00 ATOM 157 N VAL 58 13.370 67.152 46.263 1.00 0.00 ATOM 158 CA VAL 58 12.838 68.464 46.622 1.00 0.00 ATOM 159 C VAL 58 11.422 68.646 46.093 1.00 0.00 ATOM 160 O VAL 58 11.129 69.574 45.334 1.00 0.00 ATOM 161 N HIS 59 6.989 67.705 47.165 1.00 0.00 ATOM 162 CA HIS 59 5.994 67.302 48.159 1.00 0.00 ATOM 163 C HIS 59 5.839 65.778 48.109 1.00 0.00 ATOM 164 O HIS 59 5.857 65.183 47.030 1.00 0.00 ATOM 165 N PRO 60 5.692 65.122 49.278 1.00 0.00 ATOM 166 CA PRO 60 5.543 63.663 49.317 1.00 0.00 ATOM 167 C PRO 60 4.392 63.077 48.497 1.00 0.00 ATOM 168 O PRO 60 4.530 61.999 47.923 1.00 0.00 ATOM 169 N ASP 61 3.264 63.776 48.433 1.00 0.00 ATOM 170 CA ASP 61 2.127 63.274 47.673 1.00 0.00 ATOM 171 C ASP 61 2.321 63.470 46.172 1.00 0.00 ATOM 172 O ASP 61 1.617 62.867 45.361 1.00 0.00 ATOM 173 N ASP 62 3.275 64.318 45.801 1.00 0.00 ATOM 174 CA ASP 62 3.547 64.555 44.393 1.00 0.00 ATOM 175 C ASP 62 4.646 63.617 43.917 1.00 0.00 ATOM 176 O ASP 62 4.640 63.163 42.767 1.00 0.00 ATOM 177 N ARG 63 5.588 63.306 44.800 1.00 0.00 ATOM 178 CA ARG 63 6.664 62.393 44.437 1.00 0.00 ATOM 179 C ARG 63 6.004 61.075 44.059 1.00 0.00 ATOM 180 O ARG 63 6.542 60.309 43.274 1.00 0.00 ATOM 181 N ALA 64 4.821 60.839 44.627 1.00 0.00 ATOM 182 CA ALA 64 4.047 59.618 44.396 1.00 0.00 ATOM 183 C ALA 64 3.567 59.403 42.961 1.00 0.00 ATOM 184 O ALA 64 3.102 58.311 42.621 1.00 0.00 ATOM 185 N ARG 65 3.679 60.422 42.111 1.00 0.00 ATOM 186 CA ARG 65 3.213 60.269 40.736 1.00 0.00 ATOM 187 C ARG 65 4.041 60.995 39.685 1.00 0.00 ATOM 188 O ARG 65 4.190 60.510 38.564 1.00 0.00 ATOM 189 N VAL 66 4.576 62.155 40.047 1.00 0.00 ATOM 190 CA VAL 66 5.359 62.960 39.112 1.00 0.00 ATOM 191 C VAL 66 6.589 62.243 38.558 1.00 0.00 ATOM 192 O VAL 66 6.841 62.263 37.355 1.00 0.00 ATOM 193 N ARG 67 7.358 61.616 39.437 1.00 0.00 ATOM 194 CA ARG 67 8.551 60.911 39.004 1.00 0.00 ATOM 195 C ARG 67 8.216 59.822 37.985 1.00 0.00 ATOM 196 O ARG 67 8.805 59.773 36.904 1.00 0.00 ATOM 197 N ARG 68 7.257 58.960 38.309 1.00 0.00 ATOM 198 CA ARG 68 6.878 57.885 37.391 1.00 0.00 ATOM 199 C ARG 68 6.332 58.410 36.067 1.00 0.00 ATOM 200 O ARG 68 6.646 57.878 35.003 1.00 0.00 ATOM 201 N GLU 69 5.508 59.449 36.140 1.00 0.00 ATOM 202 CA GLU 69 4.937 60.039 34.940 1.00 0.00 ATOM 203 C GLU 69 6.055 60.582 34.043 1.00 0.00 ATOM 204 O GLU 69 6.154 60.218 32.872 1.00 0.00 ATOM 205 N LEU 70 6.918 61.431 34.591 1.00 0.00 ATOM 206 CA LEU 70 7.992 62.001 33.781 1.00 0.00 ATOM 207 C LEU 70 8.931 60.953 33.191 1.00 0.00 ATOM 208 O LEU 70 9.359 61.072 32.044 1.00 0.00 ATOM 209 N ASP 71 9.249 59.928 33.972 1.00 0.00 ATOM 210 CA ASP 71 10.115 58.862 33.495 1.00 0.00 ATOM 211 C ASP 71 9.481 58.160 32.295 1.00 0.00 ATOM 212 O ASP 71 10.112 57.991 31.251 1.00 0.00 ATOM 213 N ARG 72 8.225 57.761 32.451 1.00 0.00 ATOM 214 CA ARG 72 7.498 57.068 31.391 1.00 0.00 ATOM 215 C ARG 72 7.418 57.892 30.107 1.00 0.00 ATOM 216 O ARG 72 7.670 57.381 29.019 1.00 0.00 ATOM 217 N HIS 73 7.063 59.166 30.232 1.00 0.00 ATOM 218 CA HIS 73 6.952 60.027 29.063 1.00 0.00 ATOM 219 C HIS 73 8.296 60.285 28.399 1.00 0.00 ATOM 220 O HIS 73 8.396 60.299 27.169 1.00 0.00 ATOM 221 N VAL 74 9.329 60.488 29.210 1.00 0.00 ATOM 222 CA VAL 74 10.667 60.735 28.686 1.00 0.00 ATOM 223 C VAL 74 11.182 59.528 27.901 1.00 0.00 ATOM 224 O VAL 74 11.683 59.672 26.786 1.00 0.00 ATOM 225 N LEU 75 11.052 58.341 28.483 1.00 0.00 ATOM 226 CA LEU 75 11.505 57.118 27.830 1.00 0.00 ATOM 227 C LEU 75 10.795 56.919 26.493 1.00 0.00 ATOM 228 O LEU 75 11.365 56.359 25.559 1.00 0.00 ATOM 229 N GLY 76 9.551 57.378 26.404 1.00 0.00 ATOM 230 CA GLY 76 8.787 57.245 25.169 1.00 0.00 ATOM 231 C GLY 76 9.057 58.403 24.214 1.00 0.00 ATOM 232 O GLY 76 8.493 58.455 23.121 1.00 0.00 ATOM 233 N ASP 77 9.923 59.324 24.630 1.00 0.00 ATOM 234 CA ASP 77 10.257 60.468 23.798 1.00 0.00 ATOM 235 C ASP 77 9.098 61.427 23.593 1.00 0.00 ATOM 236 O ASP 77 9.061 62.174 22.616 1.00 0.00 ATOM 237 N ARG 78 8.151 61.417 24.524 1.00 0.00 ATOM 238 CA ARG 78 6.979 62.280 24.431 1.00 0.00 ATOM 239 C ARG 78 7.084 63.511 25.336 1.00 0.00 ATOM 240 O ARG 78 7.278 63.379 26.541 1.00 0.00 ATOM 241 N PRO 79 6.961 64.703 24.758 1.00 0.00 ATOM 242 CA PRO 79 7.031 65.926 25.556 1.00 0.00 ATOM 243 C PRO 79 5.928 65.879 26.581 1.00 0.00 ATOM 244 O PRO 79 4.858 65.339 26.322 1.00 0.00 ATOM 245 N PHE 80 6.179 66.446 27.752 1.00 0.00 ATOM 246 CA PHE 80 5.174 66.423 28.799 1.00 0.00 ATOM 247 C PHE 80 5.356 67.589 29.749 1.00 0.00 ATOM 248 O PHE 80 6.314 68.354 29.638 1.00 0.00 ATOM 249 N ASP 81 4.424 67.716 30.687 1.00 0.00 ATOM 250 CA ASP 81 4.484 68.770 31.689 1.00 0.00 ATOM 251 C ASP 81 3.755 68.266 32.925 1.00 0.00 ATOM 252 O ASP 81 2.860 67.433 32.820 1.00 0.00 ATOM 253 N VAL 82 4.155 68.758 34.093 1.00 0.00 ATOM 254 CA VAL 82 3.537 68.355 35.350 1.00 0.00 ATOM 255 C VAL 82 3.500 69.510 36.334 1.00 0.00 ATOM 256 O VAL 82 4.409 70.342 36.371 1.00 0.00 ATOM 257 N GLU 83 2.430 69.561 37.118 1.00 0.00 ATOM 258 CA GLU 83 2.257 70.588 38.133 1.00 0.00 ATOM 259 C GLU 83 2.451 69.907 39.478 1.00 0.00 ATOM 260 O GLU 83 1.838 68.875 39.747 1.00 0.00 ATOM 261 N TYR 84 3.309 70.473 40.317 1.00 0.00 ATOM 262 CA TYR 84 3.549 69.889 41.628 1.00 0.00 ATOM 263 C TYR 84 4.081 70.912 42.619 1.00 0.00 ATOM 264 O TYR 84 4.466 72.034 42.256 1.00 0.00 ATOM 265 N ARG 85 4.091 70.508 43.883 1.00 0.00 ATOM 266 CA ARG 85 4.576 71.344 44.959 1.00 0.00 ATOM 267 C ARG 85 6.052 71.051 45.164 1.00 0.00 ATOM 268 O ARG 85 6.431 69.946 45.569 1.00 0.00 ATOM 269 N ILE 86 6.888 72.036 44.852 1.00 0.00 ATOM 270 CA ILE 86 8.328 71.894 45.012 1.00 0.00 ATOM 271 C ILE 86 8.674 72.286 46.436 1.00 0.00 ATOM 272 O ILE 86 8.018 73.141 47.032 1.00 0.00 ATOM 273 N VAL 87 9.708 71.662 46.974 1.00 0.00 ATOM 274 CA VAL 87 10.140 71.928 48.340 1.00 0.00 ATOM 275 C VAL 87 11.188 73.027 48.401 1.00 0.00 ATOM 276 O VAL 87 12.255 72.913 47.799 1.00 0.00 ATOM 277 N ARG 88 10.876 74.095 49.125 1.00 0.00 ATOM 278 CA ARG 88 11.805 75.201 49.299 1.00 0.00 ATOM 279 C ARG 88 12.776 74.753 50.388 1.00 0.00 ATOM 280 O ARG 88 12.412 73.929 51.234 1.00 0.00 ATOM 281 N PRO 89 14.005 75.261 50.386 1.00 0.00 ATOM 282 CA PRO 89 14.942 74.832 51.422 1.00 0.00 ATOM 283 C PRO 89 14.428 75.143 52.825 1.00 0.00 ATOM 284 O PRO 89 14.715 74.400 53.765 1.00 0.00 ATOM 285 N ASP 90 13.666 76.226 52.980 1.00 0.00 ATOM 286 CA ASP 90 13.161 76.567 54.310 1.00 0.00 ATOM 287 C ASP 90 11.997 75.689 54.772 1.00 0.00 ATOM 288 O ASP 90 11.438 75.898 55.849 1.00 0.00 ATOM 289 N GLY 91 11.632 74.705 53.958 1.00 0.00 ATOM 290 CA GLY 91 10.566 73.803 54.354 1.00 0.00 ATOM 291 C GLY 91 9.185 73.998 53.765 1.00 0.00 ATOM 292 O GLY 91 8.395 73.053 53.766 1.00 0.00 ATOM 293 N GLN 92 8.863 75.193 53.277 1.00 0.00 ATOM 294 CA GLN 92 7.541 75.386 52.702 1.00 0.00 ATOM 295 C GLN 92 7.511 74.926 51.247 1.00 0.00 ATOM 296 O GLN 92 8.555 74.701 50.629 1.00 0.00 ATOM 297 N VAL 93 6.305 74.779 50.709 1.00 0.00 ATOM 298 CA VAL 93 6.116 74.312 49.342 1.00 0.00 ATOM 299 C VAL 93 5.753 75.413 48.358 1.00 0.00 ATOM 300 O VAL 93 5.020 76.343 48.695 1.00 0.00 ATOM 301 N ARG 94 6.273 75.294 47.137 1.00 0.00 ATOM 302 CA ARG 94 5.999 76.254 46.076 1.00 0.00 ATOM 303 C ARG 94 5.461 75.496 44.861 1.00 0.00 ATOM 304 O ARG 94 6.084 74.546 44.386 1.00 0.00 ATOM 305 N GLU 95 4.299 75.920 44.375 1.00 0.00 ATOM 306 CA GLU 95 3.677 75.300 43.218 1.00 0.00 ATOM 307 C GLU 95 4.457 75.614 41.955 1.00 0.00 ATOM 308 O GLU 95 4.630 76.780 41.590 1.00 0.00 ATOM 309 N LEU 96 4.902 74.562 41.283 1.00 0.00 ATOM 310 CA LEU 96 5.685 74.699 40.069 1.00 0.00 ATOM 311 C LEU 96 5.132 73.864 38.919 1.00 0.00 ATOM 312 O LEU 96 4.535 72.807 39.126 1.00 0.00 ATOM 313 N LEU 97 5.314 74.375 37.708 1.00 0.00 ATOM 314 CA LEU 97 4.913 73.675 36.501 1.00 0.00 ATOM 315 C LEU 97 6.231 73.400 35.793 1.00 0.00 ATOM 316 O LEU 97 6.989 74.322 35.504 1.00 0.00 ATOM 317 N GLU 98 6.508 72.128 35.541 1.00 0.00 ATOM 318 CA GLU 98 7.731 71.734 34.862 1.00 0.00 ATOM 319 C GLU 98 7.288 71.328 33.452 1.00 0.00 ATOM 320 O GLU 98 6.401 70.485 33.295 1.00 0.00 ATOM 321 N ARG 99 7.883 71.958 32.440 1.00 0.00 ATOM 322 CA ARG 99 7.560 71.693 31.039 1.00 0.00 ATOM 323 C ARG 99 8.788 71.096 30.393 1.00 0.00 ATOM 324 O ARG 99 9.863 71.693 30.423 1.00 0.00 ATOM 325 N ASN 100 8.608 69.925 29.790 1.00 0.00 ATOM 326 CA ASN 100 9.716 69.182 29.215 1.00 0.00 ATOM 327 C ASN 100 9.645 68.822 27.745 1.00 0.00 ATOM 328 O ASN 100 8.648 68.279 27.267 1.00 0.00 ATOM 329 N HIS 101 10.731 69.118 27.040 1.00 0.00 ATOM 330 CA HIS 101 10.853 68.765 25.637 1.00 0.00 ATOM 331 C HIS 101 11.919 67.671 25.599 1.00 0.00 ATOM 332 O HIS 101 12.978 67.824 26.208 1.00 0.00 ATOM 333 N ILE 102 11.638 66.574 24.900 1.00 0.00 ATOM 334 CA ILE 102 12.586 65.461 24.799 1.00 0.00 ATOM 335 C ILE 102 13.389 65.565 23.507 1.00 0.00 ATOM 336 O ILE 102 12.818 65.657 22.426 1.00 0.00 ATOM 337 N GLN 103 14.712 65.546 23.634 1.00 0.00 ATOM 338 CA GLN 103 15.609 65.642 22.484 1.00 0.00 ATOM 339 C GLN 103 16.215 64.281 22.145 1.00 0.00 ATOM 340 O GLN 103 16.687 63.568 23.031 1.00 0.00 ATOM 341 N ARG 104 16.199 63.929 20.863 1.00 0.00 ATOM 342 CA ARG 104 16.753 62.659 20.397 1.00 0.00 ATOM 343 C ARG 104 18.025 62.914 19.596 1.00 0.00 ATOM 344 O ARG 104 18.153 63.952 18.947 1.00 0.00 ATOM 345 N GLN 105 18.960 61.968 19.647 1.00 0.00 ATOM 346 CA GLN 105 20.221 62.101 18.923 1.00 0.00 ATOM 347 C GLN 105 20.077 61.642 17.477 1.00 0.00 ATOM 348 O GLN 105 18.995 61.238 17.050 1.00 0.00 ATOM 349 N ALA 106 21.179 61.691 16.735 1.00 0.00 ATOM 350 CA ALA 106 21.185 61.298 15.328 1.00 0.00 ATOM 351 C ALA 106 20.705 59.880 15.053 1.00 0.00 ATOM 352 O ALA 106 20.227 59.592 13.956 1.00 0.00 ATOM 353 N SER 107 20.830 58.990 16.032 1.00 0.00 ATOM 354 CA SER 107 20.387 57.614 15.841 1.00 0.00 ATOM 355 C SER 107 18.935 57.422 16.269 1.00 0.00 ATOM 356 O SER 107 18.400 56.312 16.216 1.00 0.00 ATOM 357 N GLY 108 18.300 58.508 16.697 1.00 0.00 ATOM 358 CA GLY 108 16.910 58.434 17.106 1.00 0.00 ATOM 359 C GLY 108 16.668 58.068 18.557 1.00 0.00 ATOM 360 O GLY 108 15.526 57.836 18.954 1.00 0.00 ATOM 361 N GLN 109 17.729 58.013 19.355 1.00 0.00 ATOM 362 CA GLN 109 17.583 57.671 20.762 1.00 0.00 ATOM 363 C GLN 109 17.529 58.915 21.642 1.00 0.00 ATOM 364 O GLN 109 18.128 59.943 21.319 1.00 0.00 ATOM 365 N VAL 110 16.799 58.817 22.749 1.00 0.00 ATOM 366 CA VAL 110 16.666 59.927 23.691 1.00 0.00 ATOM 367 C VAL 110 18.056 60.351 24.155 1.00 0.00 ATOM 368 O VAL 110 18.836 59.535 24.644 1.00 0.00 ATOM 369 N ASP 111 18.358 61.635 24.007 1.00 0.00 ATOM 370 CA ASP 111 19.664 62.157 24.373 1.00 0.00 ATOM 371 C ASP 111 19.632 63.133 25.545 1.00 0.00 ATOM 372 O ASP 111 20.549 63.165 26.365 1.00 0.00 ATOM 373 N HIS 112 18.578 63.932 25.629 1.00 0.00 ATOM 374 CA HIS 112 18.488 64.888 26.711 1.00 0.00 ATOM 375 C HIS 112 17.079 65.393 26.905 1.00 0.00 ATOM 376 O HIS 112 16.189 65.128 26.096 1.00 0.00 ATOM 377 N LEU 113 16.891 66.117 28.002 1.00 0.00 ATOM 378 CA LEU 113 15.611 66.718 28.347 1.00 0.00 ATOM 379 C LEU 113 15.910 68.200 28.548 1.00 0.00 ATOM 380 O LEU 113 16.853 68.554 29.253 1.00 0.00 ATOM 381 N TRP 114 15.117 69.062 27.923 1.00 0.00 ATOM 382 CA TRP 114 15.316 70.505 28.030 1.00 0.00 ATOM 383 C TRP 114 13.973 71.165 28.301 1.00 0.00 ATOM 384 O TRP 114 12.964 70.792 27.708 1.00 0.00 ATOM 385 N GLY 115 13.952 72.155 29.180 1.00 0.00 ATOM 386 CA GLY 115 12.688 72.802 29.450 1.00 0.00 ATOM 387 C GLY 115 12.775 73.968 30.396 1.00 0.00 ATOM 388 O GLY 115 13.830 74.586 30.556 1.00 0.00 ATOM 389 N THR 116 11.649 74.262 31.033 1.00 0.00 ATOM 390 CA THR 116 11.568 75.368 31.974 1.00 0.00 ATOM 391 C THR 116 10.723 74.978 33.177 1.00 0.00 ATOM 392 O THR 116 9.819 74.155 33.068 1.00 0.00 ATOM 393 N ILE 118 8.326 76.777 36.054 1.00 0.00 ATOM 394 CA ILE 118 7.587 78.017 36.256 1.00 0.00 ATOM 395 C ILE 118 6.921 78.050 37.623 1.00 0.00 ATOM 396 O ILE 118 6.354 77.051 38.065 1.00 0.00 ATOM 397 N ASP 119 6.979 79.207 38.274 1.00 0.00 ATOM 398 CA ASP 119 6.337 79.406 39.568 1.00 0.00 ATOM 399 C ASP 119 4.867 79.643 39.223 1.00 0.00 ATOM 400 O ASP 119 4.544 80.611 38.531 1.00 0.00 ATOM 401 N MET 120 3.982 78.754 39.665 1.00 0.00 ATOM 402 CA MET 120 2.561 78.935 39.377 1.00 0.00 ATOM 403 C MET 120 1.760 79.168 40.648 1.00 0.00 ATOM 404 O MET 120 0.605 78.757 40.764 1.00 0.00 ATOM 405 N THR 121 2.399 79.851 41.591 1.00 0.00 ATOM 406 CA THR 121 1.803 80.199 42.873 1.00 0.00 ATOM 407 C THR 121 0.482 80.940 42.703 1.00 0.00 ATOM 408 O THR 121 -0.484 80.676 43.418 1.00 0.00 ATOM 409 N GLU 122 0.454 81.875 41.760 1.00 0.00 ATOM 410 CA GLU 122 -0.735 82.679 41.499 1.00 0.00 ATOM 411 C GLU 122 -1.943 81.846 41.098 1.00 0.00 ATOM 412 O GLU 122 -3.085 82.246 41.331 1.00 0.00 ATOM 413 N HIS 123 -1.694 80.692 40.491 1.00 0.00 ATOM 414 CA HIS 123 -2.776 79.813 40.069 1.00 0.00 ATOM 415 C HIS 123 -3.336 79.021 41.242 1.00 0.00 ATOM 416 O HIS 123 -4.346 78.331 41.108 1.00 0.00 ATOM 417 N LYS 124 -2.680 79.124 42.392 1.00 0.00 ATOM 418 CA LYS 124 -3.113 78.399 43.574 1.00 0.00 ATOM 419 C LYS 124 -3.434 79.296 44.765 1.00 0.00 ATOM 420 O LYS 124 -3.306 78.883 45.917 1.00 0.00 ATOM 421 N GLN 125 -3.853 80.527 44.488 1.00 0.00 ATOM 422 CA GLN 125 -4.215 81.455 45.555 1.00 0.00 ATOM 423 C GLN 125 -5.730 81.486 45.708 1.00 0.00 ATOM 424 O GLN 125 -6.448 81.906 44.793 1.00 0.00 END ########################## # # # ACE results: # # # ########################## # WARNING! TARGET 873 atoms, MODEL 563 atoms, 435 common with TARGET Number of atoms possible to evaluate: 412 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 34.41 84.0 200 95.2 210 ARMSMC SECONDARY STRUCTURE . . 24.57 90.2 123 94.6 130 ARMSMC SURFACE . . . . . . . . 31.26 85.6 167 94.9 176 ARMSMC BURIED . . . . . . . . 47.22 75.8 33 97.1 34 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 92 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 82 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 61 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 79 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 72 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 58 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 51 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 63 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 20 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 19.51 (Number of atoms: 103) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 19.51 103 97.2 106 CRMSCA CRN = ALL/NP . . . . . 0.1894 CRMSCA SECONDARY STRUCTURE . . 17.05 63 96.9 65 CRMSCA SURFACE . . . . . . . . 20.07 86 96.6 89 CRMSCA BURIED . . . . . . . . 16.40 17 100.0 17 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 19.46 412 78.9 522 CRMSMC SECONDARY STRUCTURE . . 17.10 252 77.8 324 CRMSMC SURFACE . . . . . . . . 19.99 344 78.5 438 CRMSMC BURIED . . . . . . . . 16.55 68 81.0 84 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 449 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 377 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 324 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 382 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 67 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 19.46 412 47.2 873 CRMSALL SECONDARY STRUCTURE . . 17.10 252 43.2 584 CRMSALL SURFACE . . . . . . . . 19.99 344 46.6 738 CRMSALL BURIED . . . . . . . . 16.55 68 50.4 135 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.468 1.000 0.500 103 97.2 106 ERRCA SECONDARY STRUCTURE . . 15.758 1.000 0.500 63 96.9 65 ERRCA SURFACE . . . . . . . . 17.852 1.000 0.500 86 96.6 89 ERRCA BURIED . . . . . . . . 15.525 1.000 0.500 17 100.0 17 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.435 1.000 0.500 412 78.9 522 ERRMC SECONDARY STRUCTURE . . 15.792 1.000 0.500 252 77.8 324 ERRMC SURFACE . . . . . . . . 17.775 1.000 0.500 344 78.5 438 ERRMC BURIED . . . . . . . . 15.714 1.000 0.500 68 81.0 84 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 449 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 377 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 324 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 382 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 67 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.435 1.000 0.500 412 47.2 873 ERRALL SECONDARY STRUCTURE . . 15.792 1.000 0.500 252 43.2 584 ERRALL SURFACE . . . . . . . . 17.775 1.000 0.500 344 46.6 738 ERRALL BURIED . . . . . . . . 15.714 1.000 0.500 68 50.4 135 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 15 103 106 DISTCA CA (P) 0.00 0.00 0.00 0.00 14.15 106 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.26 DISTCA ALL (N) 0 0 0 0 58 412 873 DISTALL ALL (P) 0.00 0.00 0.00 0.00 6.64 873 DISTALL ALL (RMS) 0.00 0.00 0.00 0.00 8.21 DISTALL END of the results output