####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 180), selected 45 , name T0600AL285_1-D2 # Molecule2: number of CA atoms 47 ( 389), selected 45 , name T0600-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0600AL285_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 76 - 121 2.08 2.08 LCS_AVERAGE: 95.74 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 44 77 - 121 1.84 2.10 LCS_AVERAGE: 92.15 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 93 - 121 0.81 2.22 LCS_AVERAGE: 44.78 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 76 G 76 0 13 45 0 0 2 9 16 22 28 32 39 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT D 77 D 77 0 44 45 0 1 2 5 15 22 28 31 39 42 45 45 45 45 45 45 45 45 45 45 LCS_GDT P 79 P 79 9 44 45 6 21 31 36 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT F 80 F 80 9 44 45 4 13 31 36 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT D 81 D 81 9 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT V 82 V 82 9 44 45 12 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT E 83 E 83 9 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT Y 84 Y 84 9 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT R 85 R 85 9 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT I 86 I 86 9 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT V 87 V 87 9 44 45 3 20 31 36 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT R 88 R 88 5 44 45 5 5 16 36 38 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT P 89 P 89 5 44 45 5 19 34 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT D 90 D 90 5 44 45 5 5 5 8 24 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT G 91 G 91 5 44 45 5 24 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT Q 92 Q 92 5 44 45 5 5 5 5 7 17 40 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT V 93 V 93 29 44 45 6 24 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT R 94 R 94 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT E 95 E 95 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT L 96 L 96 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT L 97 L 97 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT E 98 E 98 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT R 99 R 99 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT N 100 N 100 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT H 101 H 101 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT I 102 I 102 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT Q 103 Q 103 29 44 45 14 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT R 104 R 104 29 44 45 13 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT Q 105 Q 105 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT A 106 A 106 29 44 45 11 27 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT S 107 S 107 29 44 45 10 24 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT G 108 G 108 29 44 45 8 23 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT Q 109 Q 109 29 44 45 10 24 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT V 110 V 110 29 44 45 10 26 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT D 111 D 111 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT H 112 H 112 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT L 113 L 113 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT W 114 W 114 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT G 115 G 115 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT T 116 T 116 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT V 117 V 117 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT I 118 I 118 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT D 119 D 119 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT M 120 M 120 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_GDT T 121 T 121 29 44 45 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 LCS_AVERAGE LCS_A: 77.56 ( 44.78 92.15 95.74 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 20 28 35 37 39 40 42 43 43 43 45 45 45 45 45 45 45 45 45 45 GDT PERCENT_AT 42.55 59.57 74.47 78.72 82.98 85.11 89.36 91.49 91.49 91.49 95.74 95.74 95.74 95.74 95.74 95.74 95.74 95.74 95.74 95.74 GDT RMS_LOCAL 0.30 0.50 0.83 0.94 1.10 1.18 1.39 1.53 1.53 1.53 2.08 2.08 2.08 2.08 2.08 2.08 2.08 2.08 2.08 2.08 GDT RMS_ALL_AT 2.28 2.20 2.17 2.18 2.16 2.13 2.13 2.15 2.15 2.15 2.08 2.08 2.08 2.08 2.08 2.08 2.08 2.08 2.08 2.08 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 76 G 76 7.409 0 0.682 0.682 8.371 17.262 17.262 LGA D 77 D 77 7.144 4 0.148 0.148 7.775 11.071 5.536 LGA P 79 P 79 2.810 3 0.079 0.079 3.426 55.357 31.633 LGA F 80 F 80 2.808 7 0.020 0.020 2.808 69.405 25.238 LGA D 81 D 81 0.842 4 0.119 0.119 1.866 86.071 43.036 LGA V 82 V 82 1.072 3 0.104 0.104 1.072 88.214 50.408 LGA E 83 E 83 1.048 5 0.049 0.049 1.387 81.429 36.190 LGA Y 84 Y 84 1.124 8 0.023 0.023 1.124 81.429 27.143 LGA R 85 R 85 1.124 7 0.050 0.050 1.382 81.429 29.610 LGA I 86 I 86 1.453 4 0.034 0.034 2.217 73.095 36.548 LGA V 87 V 87 3.136 3 0.096 0.096 3.136 63.333 36.190 LGA R 88 R 88 3.132 7 0.652 0.652 3.132 67.143 24.416 LGA P 89 P 89 1.611 3 0.034 0.034 2.922 69.048 39.456 LGA D 90 D 90 3.412 4 0.009 0.009 4.131 50.476 25.238 LGA G 91 G 91 1.989 0 0.244 0.244 2.542 64.881 64.881 LGA Q 92 Q 92 4.329 5 0.493 0.493 4.329 46.905 20.847 LGA V 93 V 93 1.394 3 0.573 0.573 1.394 83.690 47.823 LGA R 94 R 94 1.043 7 0.055 0.055 1.150 81.429 29.610 LGA E 95 E 95 0.995 5 0.076 0.076 1.034 85.952 38.201 LGA L 96 L 96 0.668 4 0.079 0.079 0.932 90.476 45.238 LGA L 97 L 97 0.353 4 0.026 0.026 0.360 100.000 50.000 LGA E 98 E 98 0.279 5 0.057 0.057 0.683 97.619 43.386 LGA R 99 R 99 0.909 7 0.093 0.093 0.909 92.857 33.766 LGA N 100 N 100 0.545 4 0.116 0.116 1.016 88.214 44.107 LGA H 101 H 101 1.044 6 0.019 0.019 1.044 90.595 36.238 LGA I 102 I 102 0.695 4 0.060 0.060 0.916 95.238 47.619 LGA Q 103 Q 103 0.387 5 0.137 0.137 0.417 100.000 44.444 LGA R 104 R 104 0.691 7 0.057 0.057 1.261 88.214 32.078 LGA Q 105 Q 105 0.470 5 0.027 0.027 1.110 92.976 41.323 LGA A 106 A 106 1.034 1 0.111 0.111 1.681 81.548 65.238 LGA S 107 S 107 1.205 2 0.171 0.171 1.303 83.690 55.794 LGA G 108 G 108 1.730 0 0.090 0.090 1.730 75.000 75.000 LGA Q 109 Q 109 1.476 5 0.010 0.010 1.489 83.690 37.196 LGA V 110 V 110 1.123 3 0.050 0.050 1.575 79.286 45.306 LGA D 111 D 111 1.143 4 0.180 0.180 1.143 90.595 45.298 LGA H 112 H 112 0.244 6 0.042 0.042 0.460 100.000 40.000 LGA L 113 L 113 0.283 4 0.095 0.095 0.431 100.000 50.000 LGA W 114 W 114 0.409 10 0.096 0.096 0.484 100.000 28.571 LGA G 115 G 115 0.564 0 0.043 0.043 0.698 95.238 95.238 LGA T 116 T 116 0.241 3 0.013 0.013 0.331 100.000 57.143 LGA V 117 V 117 0.057 3 0.023 0.023 0.333 100.000 57.143 LGA I 118 I 118 0.497 4 0.048 0.048 0.497 100.000 50.000 LGA D 119 D 119 0.536 4 0.043 0.043 0.625 92.857 46.429 LGA M 120 M 120 0.585 4 0.114 0.114 0.585 95.238 47.619 LGA T 121 T 121 1.152 3 0.636 0.636 4.422 68.452 39.116 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 369 180 48.78 47 SUMMARY(RMSD_GDC): 2.084 1.997 1.997 77.434 40.054 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 47 4.0 43 1.53 81.383 86.737 2.630 LGA_LOCAL RMSD: 1.535 Number of atoms: 43 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.146 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 2.084 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.109582 * X + 0.073585 * Y + 0.991250 * Z + -34.953705 Y_new = 0.034261 * X + -0.996943 * Y + 0.070220 * Z + 87.095795 Z_new = 0.993387 * X + 0.026266 * Y + -0.111768 * Z + -49.407856 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.303021 -1.455729 2.910776 [DEG: 17.3618 -83.4072 166.7752 ] ZXZ: 1.641518 1.682799 1.544361 [DEG: 94.0521 96.4173 88.4854 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0600AL285_1-D2 REMARK 2: T0600-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0600AL285_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 47 4.0 43 1.53 86.737 2.08 REMARK ---------------------------------------------------------- MOLECULE T0600AL285_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3eehA ATOM 281 N GLY 76 9.589 59.494 19.697 1.00 0.00 N ATOM 282 CA GLY 76 8.673 59.096 20.769 1.00 0.00 C ATOM 283 C GLY 76 7.266 59.646 20.633 1.00 0.00 C ATOM 284 O GLY 76 6.471 59.485 21.542 1.00 0.00 O ATOM 285 N ASP 77 6.940 60.233 19.480 1.00 0.00 N ATOM 286 CA ASP 77 5.620 60.817 19.240 1.00 0.00 C ATOM 287 C ASP 77 4.711 59.880 18.444 1.00 0.00 C ATOM 288 O ASP 77 5.171 59.078 17.650 1.00 0.00 O ATOM 289 N PRO 79 3.414 60.004 18.635 1.00 0.00 N ATOM 290 CA PRO 79 2.485 59.272 17.792 1.00 0.00 C ATOM 291 C PRO 79 2.373 60.021 16.475 1.00 0.00 C ATOM 292 O PRO 79 2.707 61.187 16.399 1.00 0.00 O ATOM 293 N PHE 80 1.933 59.353 15.427 1.00 0.00 N ATOM 294 CA PHE 80 1.802 60.010 14.148 1.00 0.00 C ATOM 295 C PHE 80 0.488 59.608 13.479 1.00 0.00 C ATOM 296 O PHE 80 -0.133 58.569 13.803 1.00 0.00 O ATOM 297 N ASP 81 0.068 60.469 12.571 1.00 0.00 N ATOM 298 CA ASP 81 -1.270 60.409 11.966 1.00 0.00 C ATOM 299 C ASP 81 -1.011 61.015 10.605 1.00 0.00 C ATOM 300 O ASP 81 -0.538 62.178 10.535 1.00 0.00 O ATOM 301 N VAL 82 -1.242 60.236 9.551 1.00 0.00 N ATOM 302 CA VAL 82 -1.023 60.689 8.190 1.00 0.00 C ATOM 303 C VAL 82 -2.067 60.118 7.234 1.00 0.00 C ATOM 304 O VAL 82 -2.706 59.097 7.513 1.00 0.00 O ATOM 305 N GLU 83 -2.241 60.783 6.108 1.00 0.00 N ATOM 306 CA GLU 83 -3.112 60.292 5.073 1.00 0.00 C ATOM 307 C GLU 83 -2.286 60.196 3.820 1.00 0.00 C ATOM 308 O GLU 83 -1.583 61.160 3.486 1.00 0.00 O ATOM 309 N TYR 84 -2.401 59.094 3.091 1.00 0.00 N ATOM 310 CA TYR 84 -1.612 58.943 1.878 1.00 0.00 C ATOM 311 C TYR 84 -2.320 58.118 0.838 1.00 0.00 C ATOM 312 O TYR 84 -3.295 57.405 1.143 1.00 0.00 O ATOM 313 N ARG 85 -1.830 58.245 -0.391 1.00 0.00 N ATOM 314 CA ARG 85 -2.377 57.565 -1.535 1.00 0.00 C ATOM 315 C ARG 85 -1.683 56.224 -1.733 1.00 0.00 C ATOM 316 O ARG 85 -0.442 56.146 -1.675 1.00 0.00 O ATOM 317 N ILE 86 -2.472 55.174 -1.970 1.00 0.00 N ATOM 318 CA ILE 86 -1.930 53.827 -2.030 1.00 0.00 C ATOM 319 C ILE 86 -2.544 53.032 -3.174 1.00 0.00 C ATOM 320 O ILE 86 -3.611 53.388 -3.707 1.00 0.00 O ATOM 321 N VAL 87 -1.804 51.986 -3.543 1.00 0.00 N ATOM 322 CA VAL 87 -2.193 50.909 -4.455 1.00 0.00 C ATOM 323 C VAL 87 -1.740 51.259 -5.865 1.00 0.00 C ATOM 324 O VAL 87 -2.449 51.920 -6.629 1.00 0.00 O ATOM 325 N ARG 88 -0.537 50.802 -6.181 1.00 0.00 N ATOM 326 CA ARG 88 0.112 51.149 -7.443 1.00 0.00 C ATOM 327 C ARG 88 -0.663 50.555 -8.606 1.00 0.00 C ATOM 328 O ARG 88 -0.673 51.134 -9.675 1.00 0.00 O ATOM 329 N PRO 89 -1.321 49.411 -8.406 1.00 0.00 N ATOM 330 CA PRO 89 -2.060 48.764 -9.493 1.00 0.00 C ATOM 331 C PRO 89 -3.281 49.619 -9.886 1.00 0.00 C ATOM 332 O PRO 89 -3.656 49.690 -11.058 1.00 0.00 O ATOM 333 N ASP 90 -3.833 50.348 -8.928 1.00 0.00 N ATOM 334 CA ASP 90 -4.958 51.248 -9.163 1.00 0.00 C ATOM 335 C ASP 90 -4.521 52.715 -9.338 1.00 0.00 C ATOM 336 O ASP 90 -5.294 53.638 -9.077 1.00 0.00 O ATOM 337 N GLY 91 -3.295 52.910 -9.798 1.00 0.00 N ATOM 338 CA GLY 91 -2.683 54.228 -9.971 1.00 0.00 C ATOM 339 C GLY 91 -2.822 55.103 -8.745 1.00 0.00 C ATOM 340 O GLY 91 -3.094 56.301 -8.843 1.00 0.00 O ATOM 341 N GLN 92 -2.636 54.480 -7.582 1.00 0.00 N ATOM 342 CA GLN 92 -2.677 55.145 -6.317 1.00 0.00 C ATOM 343 C GLN 92 -3.967 55.915 -6.062 1.00 0.00 C ATOM 344 O GLN 92 -3.945 56.965 -5.440 1.00 0.00 O ATOM 345 N VAL 93 -5.091 55.347 -6.467 1.00 0.00 N ATOM 346 CA VAL 93 -6.378 56.041 -6.283 1.00 0.00 C ATOM 347 C VAL 93 -7.036 55.742 -4.929 1.00 0.00 C ATOM 348 O VAL 93 -8.103 56.257 -4.655 1.00 0.00 O ATOM 349 N ARG 94 -6.412 54.932 -4.076 1.00 0.00 N ATOM 350 CA ARG 94 -6.968 54.755 -2.759 1.00 0.00 C ATOM 351 C ARG 94 -6.342 55.742 -1.823 1.00 0.00 C ATOM 352 O ARG 94 -5.166 56.070 -2.002 1.00 0.00 O ATOM 353 N GLU 95 -7.134 56.246 -0.868 1.00 0.00 N ATOM 354 CA GLU 95 -6.608 57.042 0.234 1.00 0.00 C ATOM 355 C GLU 95 -6.737 56.227 1.483 1.00 0.00 C ATOM 356 O GLU 95 -7.812 55.632 1.751 1.00 0.00 O ATOM 357 N LEU 96 -5.663 56.247 2.284 1.00 0.00 N ATOM 358 CA LEU 96 -5.568 55.530 3.523 1.00 0.00 C ATOM 359 C LEU 96 -5.184 56.478 4.640 1.00 0.00 C ATOM 360 O LEU 96 -4.327 57.387 4.453 1.00 0.00 O ATOM 361 N LEU 97 -5.847 56.314 5.781 1.00 0.00 N ATOM 362 CA LEU 97 -5.534 57.014 7.009 1.00 0.00 C ATOM 363 C LEU 97 -4.729 56.065 7.898 1.00 0.00 C ATOM 364 O LEU 97 -5.182 54.936 8.222 1.00 0.00 O ATOM 365 N GLU 98 -3.522 56.499 8.256 1.00 0.00 N ATOM 366 CA GLU 98 -2.586 55.677 9.062 1.00 0.00 C ATOM 367 C GLU 98 -2.367 56.390 10.381 1.00 0.00 C ATOM 368 O GLU 98 -2.111 57.603 10.433 1.00 0.00 O ATOM 369 N ARG 99 -2.479 55.644 11.485 1.00 0.00 N ATOM 370 CA ARG 99 -2.097 56.152 12.771 1.00 0.00 C ATOM 371 C ARG 99 -1.098 55.150 13.355 1.00 0.00 C ATOM 372 O ARG 99 -1.315 53.935 13.276 1.00 0.00 O ATOM 373 N ASN 100 -0.005 55.679 13.902 1.00 0.00 N ATOM 374 CA ASN 100 1.074 54.874 14.451 1.00 0.00 C ATOM 375 C ASN 100 1.522 55.408 15.797 1.00 0.00 C ATOM 376 O ASN 100 1.382 56.613 16.099 1.00 0.00 O ATOM 377 N HIS 101 2.022 54.480 16.599 1.00 0.00 N ATOM 378 CA HIS 101 2.604 54.748 17.900 1.00 0.00 C ATOM 379 C HIS 101 3.913 53.967 18.062 1.00 0.00 C ATOM 380 O HIS 101 4.047 52.859 17.538 1.00 0.00 O ATOM 381 N ILE 102 4.856 54.536 18.822 1.00 0.00 N ATOM 382 CA ILE 102 6.119 53.893 19.109 1.00 0.00 C ATOM 383 C ILE 102 6.002 52.917 20.283 1.00 0.00 C ATOM 384 O ILE 102 5.217 53.158 21.214 1.00 0.00 O ATOM 385 N GLN 103 6.723 51.806 20.202 1.00 0.00 N ATOM 386 CA GLN 103 6.855 50.873 21.328 1.00 0.00 C ATOM 387 C GLN 103 8.348 50.941 21.672 1.00 0.00 C ATOM 388 O GLN 103 9.218 50.814 20.803 1.00 0.00 O ATOM 389 N ARG 104 8.653 51.178 22.930 1.00 0.00 N ATOM 390 CA ARG 104 10.016 51.502 23.319 1.00 0.00 C ATOM 391 C ARG 104 10.688 50.406 24.139 1.00 0.00 C ATOM 392 O ARG 104 10.031 49.525 24.705 1.00 0.00 O ATOM 393 N GLN 105 12.015 50.437 24.181 1.00 0.00 N ATOM 394 CA GLN 105 12.761 49.490 24.989 1.00 0.00 C ATOM 395 C GLN 105 12.993 50.072 26.366 1.00 0.00 C ATOM 396 O GLN 105 12.483 51.141 26.684 1.00 0.00 O ATOM 397 N ALA 106 13.820 49.398 27.158 1.00 0.00 N ATOM 398 CA ALA 106 14.185 49.874 28.514 1.00 0.00 C ATOM 399 C ALA 106 14.763 51.302 28.560 1.00 0.00 C ATOM 400 O ALA 106 14.558 52.021 29.548 1.00 0.00 O ATOM 401 N SER 107 15.462 51.709 27.502 1.00 0.00 N ATOM 402 CA SER 107 16.125 53.004 27.484 1.00 0.00 C ATOM 403 C SER 107 15.259 54.086 26.853 1.00 0.00 C ATOM 404 O SER 107 15.721 55.199 26.657 1.00 0.00 O ATOM 405 N GLY 108 14.010 53.766 26.513 1.00 0.00 N ATOM 406 CA GLY 108 13.115 54.766 25.982 1.00 0.00 C ATOM 407 C GLY 108 13.265 54.923 24.476 1.00 0.00 C ATOM 408 O GLY 108 12.655 55.803 23.894 1.00 0.00 O ATOM 409 N GLN 109 14.063 54.067 23.839 1.00 0.00 N ATOM 410 CA GLN 109 14.263 54.147 22.396 1.00 0.00 C ATOM 411 C GLN 109 13.118 53.429 21.681 1.00 0.00 C ATOM 412 O GLN 109 12.680 52.370 22.105 1.00 0.00 O ATOM 413 N VAL 110 12.662 53.989 20.576 1.00 0.00 N ATOM 414 CA VAL 110 11.627 53.362 19.774 1.00 0.00 C ATOM 415 C VAL 110 12.226 52.142 19.082 1.00 0.00 C ATOM 416 O VAL 110 13.169 52.281 18.304 1.00 0.00 O ATOM 417 N ASP 111 11.684 50.949 19.373 1.00 0.00 N ATOM 418 CA ASP 111 12.196 49.710 18.790 1.00 0.00 C ATOM 419 C ASP 111 11.188 48.990 17.901 1.00 0.00 C ATOM 420 O ASP 111 11.569 48.185 17.062 1.00 0.00 O ATOM 421 N HIS 112 9.907 49.324 18.043 1.00 0.00 N ATOM 422 CA HIS 112 8.846 48.823 17.180 1.00 0.00 C ATOM 423 C HIS 112 7.889 49.962 16.939 1.00 0.00 C ATOM 424 O HIS 112 7.778 50.883 17.748 1.00 0.00 O ATOM 425 N LEU 113 7.181 49.889 15.833 1.00 0.00 N ATOM 426 CA LEU 113 6.160 50.881 15.502 1.00 0.00 C ATOM 427 C LEU 113 4.907 50.106 15.129 1.00 0.00 C ATOM 428 O LEU 113 4.969 49.086 14.422 1.00 0.00 O ATOM 429 N TRP 114 3.768 50.589 15.602 1.00 0.00 N ATOM 430 CA TRP 114 2.528 49.844 15.478 1.00 0.00 C ATOM 431 C TRP 114 1.339 50.745 15.281 1.00 0.00 C ATOM 432 O TRP 114 1.276 51.820 15.853 1.00 0.00 O ATOM 433 N GLY 115 0.357 50.277 14.526 1.00 0.00 N ATOM 434 CA GLY 115 -0.876 51.047 14.354 1.00 0.00 C ATOM 435 C GLY 115 -1.858 50.389 13.416 1.00 0.00 C ATOM 436 O GLY 115 -1.862 49.146 13.228 1.00 0.00 O ATOM 437 N THR 116 -2.698 51.225 12.810 1.00 0.00 N ATOM 438 CA THR 116 -3.689 50.752 11.877 1.00 0.00 C ATOM 439 C THR 116 -3.616 51.575 10.622 1.00 0.00 C ATOM 440 O THR 116 -2.997 52.634 10.597 1.00 0.00 O ATOM 441 N VAL 117 -4.236 51.060 9.573 1.00 0.00 N ATOM 442 CA VAL 117 -4.410 51.823 8.328 1.00 0.00 C ATOM 443 C VAL 117 -5.837 51.526 7.844 1.00 0.00 C ATOM 444 O VAL 117 -6.271 50.368 7.804 1.00 0.00 O ATOM 445 N ILE 118 -6.596 52.582 7.556 1.00 0.00 N ATOM 446 CA ILE 118 -7.980 52.448 7.135 1.00 0.00 C ATOM 447 C ILE 118 -8.163 53.094 5.771 1.00 0.00 C ATOM 448 O ILE 118 -7.691 54.208 5.528 1.00 0.00 O ATOM 449 N ASP 119 -8.821 52.359 4.876 1.00 0.00 N ATOM 450 CA ASP 119 -9.146 52.835 3.541 1.00 0.00 C ATOM 451 C ASP 119 -10.255 53.870 3.715 1.00 0.00 C ATOM 452 O ASP 119 -11.361 53.525 4.117 1.00 0.00 O ATOM 453 N MET 120 -9.970 55.131 3.434 1.00 0.00 N ATOM 454 CA MET 120 -10.959 56.221 3.518 1.00 0.00 C ATOM 455 C MET 120 -11.381 56.762 2.147 1.00 0.00 C ATOM 456 O MET 120 -11.923 57.842 2.027 1.00 0.00 O ATOM 457 N THR 121 -10.993 56.024 1.124 1.00 0.00 N ATOM 458 CA THR 121 -11.654 55.863 -0.207 1.00 0.00 C ATOM 459 C THR 121 -10.739 55.466 -1.344 1.00 0.00 C ATOM 460 O THR 121 -9.664 54.822 -1.037 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 180 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 44.31 83.7 86 93.5 92 ARMSMC SECONDARY STRUCTURE . . 30.05 91.7 60 100.0 60 ARMSMC SURFACE . . . . . . . . 46.61 81.6 76 92.7 82 ARMSMC BURIED . . . . . . . . 19.25 100.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 37 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 28 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 23 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.08 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.08 45 95.7 47 CRMSCA CRN = ALL/NP . . . . . 0.0463 CRMSCA SECONDARY STRUCTURE . . 1.04 30 100.0 30 CRMSCA SURFACE . . . . . . . . 2.19 40 95.2 42 CRMSCA BURIED . . . . . . . . 0.78 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.00 180 77.9 231 CRMSMC SECONDARY STRUCTURE . . 0.95 120 80.5 149 CRMSMC SURFACE . . . . . . . . 2.10 160 77.7 206 CRMSMC BURIED . . . . . . . . 0.75 20 80.0 25 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 201 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 167 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 143 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 176 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 25 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.00 180 46.3 389 CRMSALL SECONDARY STRUCTURE . . 0.95 120 45.6 263 CRMSALL SURFACE . . . . . . . . 2.10 160 46.5 344 CRMSALL BURIED . . . . . . . . 0.75 20 44.4 45 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.513 1.000 0.500 45 95.7 47 ERRCA SECONDARY STRUCTURE . . 0.875 1.000 0.500 30 100.0 30 ERRCA SURFACE . . . . . . . . 1.606 1.000 0.500 40 95.2 42 ERRCA BURIED . . . . . . . . 0.771 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.448 1.000 0.500 180 77.9 231 ERRMC SECONDARY STRUCTURE . . 0.814 1.000 0.500 120 80.5 149 ERRMC SURFACE . . . . . . . . 1.539 1.000 0.500 160 77.7 206 ERRMC BURIED . . . . . . . . 0.724 1.000 0.500 20 80.0 25 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 201 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 167 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 143 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 176 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 25 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.448 1.000 0.500 180 46.3 389 ERRALL SECONDARY STRUCTURE . . 0.814 1.000 0.500 120 45.6 263 ERRALL SURFACE . . . . . . . . 1.539 1.000 0.500 160 46.5 344 ERRALL BURIED . . . . . . . . 0.724 1.000 0.500 20 44.4 45 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 25 35 40 43 45 45 47 DISTCA CA (P) 53.19 74.47 85.11 91.49 95.74 47 DISTCA CA (RMS) 0.71 0.99 1.27 1.61 2.08 DISTCA ALL (N) 98 137 162 173 180 180 389 DISTALL ALL (P) 25.19 35.22 41.65 44.47 46.27 389 DISTALL ALL (RMS) 0.66 0.96 1.28 1.57 2.00 DISTALL END of the results output