####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 59 ( 236), selected 59 , name T0600AL285_1-D1 # Molecule2: number of CA atoms 59 ( 484), selected 59 , name T0600-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0600AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 59 17 - 75 2.45 2.45 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 48 - 75 1.92 2.77 LCS_AVERAGE: 38.98 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 52 - 71 0.98 2.83 LONGEST_CONTINUOUS_SEGMENT: 20 53 - 72 0.99 2.86 LCS_AVERAGE: 22.32 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 59 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 17 G 17 9 16 59 6 18 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT I 18 I 18 9 16 59 7 19 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT G 19 G 19 9 16 59 7 17 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT S 20 S 20 9 16 59 7 18 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT W 21 W 21 9 16 59 7 17 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT V 22 V 22 9 16 59 7 17 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT L 23 L 23 9 16 59 7 19 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT H 24 H 24 9 16 59 7 15 29 39 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT M 25 M 25 9 16 59 4 9 28 39 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT E 26 E 26 4 16 59 3 3 6 17 33 41 45 52 56 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT S 27 S 27 3 16 59 0 3 13 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT G 28 G 28 4 17 59 5 6 7 24 41 46 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 29 R 29 4 20 59 3 10 16 18 41 46 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT L 30 L 30 7 20 59 3 6 9 14 23 33 48 52 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT E 31 E 31 7 20 59 3 6 11 24 35 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT W 32 W 32 11 20 59 5 14 31 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT S 33 S 33 11 20 59 7 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT Q 34 Q 34 11 20 59 7 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT A 35 A 35 11 20 59 4 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT V 36 V 36 11 20 59 3 15 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT H 37 H 37 11 20 59 5 17 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 38 D 38 11 20 59 5 17 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT I 39 I 39 11 20 59 5 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT F 40 F 40 11 20 59 7 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT G 41 G 41 11 20 59 5 15 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT T 42 T 42 11 20 59 4 14 29 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 43 D 43 11 20 59 4 9 19 34 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT S 44 S 44 10 20 59 4 8 12 20 33 45 49 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT A 45 A 45 10 20 59 3 9 12 17 31 41 47 52 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT T 46 T 46 10 20 59 3 9 12 17 24 37 47 52 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT F 47 F 47 10 20 59 3 4 10 17 22 36 47 52 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 48 D 48 3 28 59 3 7 12 27 35 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT A 49 A 49 4 28 59 3 3 4 5 5 11 21 47 54 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT T 50 T 50 4 28 59 4 4 4 29 40 46 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT E 51 E 51 16 28 59 4 6 11 19 37 46 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 52 D 52 20 28 59 4 15 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT A 53 A 53 20 28 59 9 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT Y 54 Y 54 20 28 59 12 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT F 55 F 55 20 28 59 12 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT Q 56 Q 56 20 28 59 12 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 57 R 57 20 28 59 12 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT V 58 V 58 20 28 59 12 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT H 59 H 59 20 28 59 12 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT P 60 P 60 20 28 59 12 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 61 D 61 20 28 59 12 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 62 D 62 20 28 59 12 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 63 R 63 20 28 59 12 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT A 64 A 64 20 28 59 8 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 65 R 65 20 28 59 12 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT V 66 V 66 20 28 59 8 16 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 67 R 67 20 28 59 8 17 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 68 R 68 20 28 59 8 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT E 69 E 69 20 28 59 8 17 27 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT L 70 L 70 20 28 59 8 13 28 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 71 D 71 20 28 59 8 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 72 R 72 20 28 59 12 17 27 39 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT H 73 H 73 16 28 59 6 13 19 35 41 46 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT V 74 V 74 16 28 59 3 13 28 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_GDT L 75 L 75 16 28 59 4 14 29 39 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 LCS_AVERAGE LCS_A: 53.77 ( 22.32 38.98 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 20 32 40 44 47 51 53 57 58 59 59 59 59 59 59 59 59 59 59 GDT PERCENT_AT 20.34 33.90 54.24 67.80 74.58 79.66 86.44 89.83 96.61 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.32 0.75 1.02 1.25 1.43 1.62 1.83 1.95 2.30 2.37 2.45 2.45 2.45 2.45 2.45 2.45 2.45 2.45 2.45 2.45 GDT RMS_ALL_AT 3.63 2.64 2.54 2.57 2.48 2.46 2.51 2.48 2.45 2.45 2.45 2.45 2.45 2.45 2.45 2.45 2.45 2.45 2.45 2.45 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 17 G 17 1.384 0 0.525 0.525 3.612 76.429 76.429 LGA I 18 I 18 0.795 4 0.111 0.111 1.132 88.214 44.107 LGA G 19 G 19 1.202 0 0.046 0.046 1.202 88.214 88.214 LGA S 20 S 20 1.075 2 0.047 0.047 1.090 83.690 55.794 LGA W 21 W 21 1.252 10 0.015 0.015 1.297 81.429 23.265 LGA V 22 V 22 1.532 3 0.080 0.080 1.532 81.548 46.599 LGA L 23 L 23 0.796 4 0.128 0.128 1.206 83.690 41.845 LGA H 24 H 24 2.198 6 0.203 0.203 3.201 61.190 24.476 LGA M 25 M 25 2.887 4 0.180 0.180 4.645 49.167 24.583 LGA E 26 E 26 4.911 5 0.208 0.208 5.311 31.786 14.127 LGA S 27 S 27 2.338 2 0.026 0.026 3.479 67.262 44.841 LGA G 28 G 28 3.332 0 0.634 0.634 3.332 57.500 57.500 LGA R 29 R 29 3.248 7 0.050 0.050 3.519 51.905 18.874 LGA L 30 L 30 4.950 4 0.626 0.626 6.156 30.833 15.417 LGA E 31 E 31 3.351 5 0.018 0.018 3.371 61.548 27.354 LGA W 32 W 32 1.519 10 0.123 0.123 2.250 72.976 20.850 LGA S 33 S 33 0.296 2 0.102 0.102 0.302 100.000 66.667 LGA Q 34 Q 34 0.354 5 0.067 0.067 0.696 95.238 42.328 LGA A 35 A 35 1.026 1 0.116 0.116 1.163 83.690 66.952 LGA V 36 V 36 1.546 3 0.019 0.019 1.546 79.286 45.306 LGA H 37 H 37 1.565 6 0.019 0.019 1.565 75.000 30.000 LGA D 38 D 38 1.730 4 0.023 0.023 1.730 75.000 37.500 LGA I 39 I 39 1.124 4 0.028 0.028 1.292 85.952 42.976 LGA F 40 F 40 0.605 7 0.039 0.039 0.948 90.476 32.900 LGA G 41 G 41 1.403 0 0.038 0.038 2.111 75.119 75.119 LGA T 42 T 42 1.873 3 0.051 0.051 2.879 66.905 38.231 LGA D 43 D 43 2.959 4 0.145 0.145 4.177 50.595 25.298 LGA S 44 S 44 4.071 2 0.086 0.086 4.500 37.262 24.841 LGA A 45 A 45 5.074 1 0.145 0.145 6.085 25.238 20.190 LGA T 46 T 46 5.446 3 0.030 0.030 5.549 26.310 15.034 LGA F 47 F 47 5.264 7 0.593 0.593 5.529 26.310 9.567 LGA D 48 D 48 3.694 4 0.603 0.603 5.130 37.500 18.750 LGA A 49 A 49 5.384 1 0.625 0.625 5.545 32.262 25.810 LGA T 50 T 50 3.612 3 0.326 0.326 3.868 48.452 27.687 LGA E 51 E 51 3.426 5 0.178 0.178 3.426 53.571 23.810 LGA D 52 D 52 1.653 4 0.196 0.196 1.817 77.143 38.571 LGA A 53 A 53 1.028 1 0.105 0.105 1.307 81.429 65.143 LGA Y 54 Y 54 1.476 8 0.110 0.110 1.476 81.429 27.143 LGA F 55 F 55 1.291 7 0.118 0.118 1.771 79.286 28.831 LGA Q 56 Q 56 1.400 5 0.067 0.067 1.521 79.286 35.238 LGA R 57 R 57 1.246 7 0.104 0.104 1.447 81.429 29.610 LGA V 58 V 58 1.403 3 0.031 0.031 1.413 83.690 47.823 LGA H 59 H 59 0.952 6 0.043 0.043 1.073 88.214 35.286 LGA P 60 P 60 0.263 3 0.021 0.021 0.647 95.238 54.422 LGA D 61 D 61 0.536 4 0.146 0.146 0.977 92.857 46.429 LGA D 62 D 62 0.735 4 0.017 0.017 0.936 90.476 45.238 LGA R 63 R 63 0.535 7 0.045 0.045 0.756 95.238 34.632 LGA A 64 A 64 0.727 1 0.038 0.038 0.835 90.476 72.381 LGA R 65 R 65 1.264 7 0.037 0.037 1.264 81.429 29.610 LGA V 66 V 66 1.319 3 0.022 0.022 1.319 85.952 49.116 LGA R 67 R 67 1.037 7 0.041 0.041 1.037 88.214 32.078 LGA R 68 R 68 1.130 7 0.033 0.033 1.379 83.690 30.433 LGA E 69 E 69 2.113 5 0.027 0.027 2.128 70.952 31.534 LGA L 70 L 70 2.073 4 0.101 0.101 2.193 68.810 34.405 LGA D 71 D 71 0.552 4 0.016 0.016 0.803 95.238 47.619 LGA R 72 R 72 2.185 7 0.025 0.025 2.679 67.024 24.372 LGA H 73 H 73 3.468 6 0.066 0.066 3.468 53.571 21.429 LGA V 74 V 74 2.467 3 0.049 0.049 2.467 70.952 40.544 LGA L 75 L 75 2.231 4 0.131 0.131 4.154 60.595 30.298 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 59 236 236 100.00 484 236 48.76 59 SUMMARY(RMSD_GDC): 2.447 2.427 2.427 70.749 37.719 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 59 59 4.0 53 1.95 72.881 69.387 2.584 LGA_LOCAL RMSD: 1.951 Number of atoms: 53 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.479 Number of assigned atoms: 59 Std_ASGN_ATOMS RMSD: 2.447 Standard rmsd on all 59 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.040235 * X + 0.939129 * Y + 0.341201 * Z + -36.896206 Y_new = -0.138380 * X + 0.343424 * Y + -0.928930 * Z + 90.171120 Z_new = -0.989562 * X + -0.009839 * Y + 0.143774 * Z + 91.888702 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.287837 1.426182 -0.068330 [DEG: -73.7877 81.7142 -3.9150 ] ZXZ: 0.352008 1.426522 -1.580739 [DEG: 20.1685 81.7337 -90.5697 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0600AL285_1-D1 REMARK 2: T0600-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0600AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 59 59 4.0 53 1.95 69.387 2.45 REMARK ---------------------------------------------------------- MOLECULE T0600AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3eehA ATOM 45 N GLY 17 9.978 84.872 35.373 1.00 0.00 N ATOM 46 CA GLY 17 11.278 84.503 35.942 1.00 0.00 C ATOM 47 C GLY 17 11.332 82.963 35.990 1.00 0.00 C ATOM 48 O GLY 17 11.409 82.344 37.058 1.00 0.00 O ATOM 49 N ILE 18 11.192 82.354 34.828 1.00 0.00 N ATOM 50 CA ILE 18 11.046 80.904 34.768 1.00 0.00 C ATOM 51 C ILE 18 12.393 80.248 34.998 1.00 0.00 C ATOM 52 O ILE 18 13.442 80.778 34.638 1.00 0.00 O ATOM 53 N GLY 19 12.351 79.068 35.577 1.00 0.00 N ATOM 54 CA GLY 19 13.505 78.196 35.623 1.00 0.00 C ATOM 55 C GLY 19 13.591 77.524 34.273 1.00 0.00 C ATOM 56 O GLY 19 12.579 76.997 33.787 1.00 0.00 O ATOM 57 N SER 20 14.782 77.512 33.680 1.00 0.00 N ATOM 58 CA SER 20 15.019 76.738 32.456 1.00 0.00 C ATOM 59 C SER 20 15.906 75.577 32.883 1.00 0.00 C ATOM 60 O SER 20 16.906 75.769 33.626 1.00 0.00 O ATOM 61 N TRP 21 15.495 74.376 32.522 1.00 0.00 N ATOM 62 CA TRP 21 16.191 73.161 32.925 1.00 0.00 C ATOM 63 C TRP 21 16.365 72.159 31.810 1.00 0.00 C ATOM 64 O TRP 21 15.597 72.131 30.840 1.00 0.00 O ATOM 65 N VAL 22 17.381 71.318 31.989 1.00 0.00 N ATOM 66 CA VAL 22 17.651 70.198 31.106 1.00 0.00 C ATOM 67 C VAL 22 18.576 69.216 31.797 1.00 0.00 C ATOM 68 O VAL 22 19.552 69.621 32.404 1.00 0.00 O ATOM 69 N LEU 23 18.237 67.935 31.723 1.00 0.00 N ATOM 70 CA LEU 23 19.037 66.854 32.290 1.00 0.00 C ATOM 71 C LEU 23 19.271 65.818 31.210 1.00 0.00 C ATOM 72 O LEU 23 18.499 65.712 30.273 1.00 0.00 O ATOM 73 N HIS 24 20.317 65.023 31.348 1.00 0.00 N ATOM 74 CA HIS 24 20.394 63.784 30.606 1.00 0.00 C ATOM 75 C HIS 24 19.279 62.871 31.140 1.00 0.00 C ATOM 76 O HIS 24 18.835 63.018 32.283 1.00 0.00 O ATOM 77 N MET 25 18.789 61.974 30.288 1.00 0.00 N ATOM 78 CA MET 25 17.629 61.144 30.633 1.00 0.00 C ATOM 79 C MET 25 17.913 60.192 31.813 1.00 0.00 C ATOM 80 O MET 25 16.987 59.748 32.469 1.00 0.00 O ATOM 81 N GLU 26 19.174 59.837 32.037 1.00 0.00 N ATOM 82 CA GLU 26 19.545 58.999 33.209 1.00 0.00 C ATOM 83 C GLU 26 19.879 59.836 34.467 1.00 0.00 C ATOM 84 O GLU 26 20.323 59.289 35.492 1.00 0.00 O ATOM 85 N SER 27 22.302 61.681 35.035 1.00 0.00 N ATOM 86 CA SER 27 23.712 61.702 35.350 1.00 0.00 C ATOM 87 C SER 27 24.260 63.132 35.312 1.00 0.00 C ATOM 88 O SER 27 25.305 63.387 35.880 1.00 0.00 O ATOM 89 N GLY 28 23.602 64.058 34.609 1.00 0.00 N ATOM 90 CA GLY 28 24.094 65.433 34.627 1.00 0.00 C ATOM 91 C GLY 28 23.008 66.443 34.365 1.00 0.00 C ATOM 92 O GLY 28 21.987 66.145 33.711 1.00 0.00 O ATOM 93 N ARG 29 23.236 67.632 34.906 1.00 0.00 N ATOM 94 CA ARG 29 22.435 68.788 34.574 1.00 0.00 C ATOM 95 C ARG 29 23.112 69.476 33.413 1.00 0.00 C ATOM 96 O ARG 29 24.312 69.779 33.472 1.00 0.00 O ATOM 97 N LEU 30 22.367 69.709 32.340 1.00 0.00 N ATOM 98 CA LEU 30 22.909 70.380 31.167 1.00 0.00 C ATOM 99 C LEU 30 22.539 71.840 31.194 1.00 0.00 C ATOM 100 O LEU 30 23.321 72.684 30.735 1.00 0.00 O ATOM 101 N GLU 31 21.338 72.155 31.682 1.00 0.00 N ATOM 102 CA GLU 31 20.877 73.542 31.744 1.00 0.00 C ATOM 103 C GLU 31 20.199 73.768 33.088 1.00 0.00 C ATOM 104 O GLU 31 19.372 72.953 33.518 1.00 0.00 O ATOM 105 N TRP 32 20.578 74.853 33.755 1.00 0.00 N ATOM 106 CA TRP 32 19.861 75.325 34.948 1.00 0.00 C ATOM 107 C TRP 32 20.213 76.772 35.151 1.00 0.00 C ATOM 108 O TRP 32 21.383 77.172 34.995 1.00 0.00 O ATOM 109 N SER 33 19.223 77.610 35.408 1.00 0.00 N ATOM 110 CA SER 33 19.495 79.020 35.691 1.00 0.00 C ATOM 111 C SER 33 19.326 79.396 37.181 1.00 0.00 C ATOM 112 O SER 33 18.849 78.602 37.977 1.00 0.00 O ATOM 113 N GLN 34 19.663 80.631 37.540 1.00 0.00 N ATOM 114 CA GLN 34 19.714 81.022 38.933 1.00 0.00 C ATOM 115 C GLN 34 18.325 81.151 39.579 1.00 0.00 C ATOM 116 O GLN 34 18.219 81.064 40.814 1.00 0.00 O ATOM 117 N ALA 35 17.270 81.290 38.773 1.00 0.00 N ATOM 118 CA ALA 35 15.872 81.285 39.297 1.00 0.00 C ATOM 119 C ALA 35 15.562 80.054 40.164 1.00 0.00 C ATOM 120 O ALA 35 14.663 80.090 41.011 1.00 0.00 O ATOM 121 N VAL 36 16.275 78.962 39.890 1.00 0.00 N ATOM 122 CA VAL 36 16.108 77.699 40.622 1.00 0.00 C ATOM 123 C VAL 36 16.321 77.892 42.110 1.00 0.00 C ATOM 124 O VAL 36 15.562 77.379 42.910 1.00 0.00 O ATOM 125 N HIS 37 17.323 78.674 42.471 1.00 0.00 N ATOM 126 CA HIS 37 17.711 78.802 43.869 1.00 0.00 C ATOM 127 C HIS 37 16.617 79.390 44.763 1.00 0.00 C ATOM 128 O HIS 37 16.310 78.800 45.804 1.00 0.00 O ATOM 129 N ASP 38 15.970 80.477 44.367 1.00 0.00 N ATOM 130 CA ASP 38 14.924 81.031 45.240 1.00 0.00 C ATOM 131 C ASP 38 13.671 80.169 45.277 1.00 0.00 C ATOM 132 O ASP 38 13.096 79.992 46.328 1.00 0.00 O ATOM 133 N ILE 39 13.288 79.604 44.133 1.00 0.00 N ATOM 134 CA ILE 39 12.047 78.870 44.076 1.00 0.00 C ATOM 135 C ILE 39 12.200 77.521 44.795 1.00 0.00 C ATOM 136 O ILE 39 11.346 77.149 45.592 1.00 0.00 O ATOM 137 N PHE 40 13.276 76.780 44.492 1.00 0.00 N ATOM 138 CA PHE 40 13.466 75.445 45.043 1.00 0.00 C ATOM 139 C PHE 40 14.024 75.513 46.454 1.00 0.00 C ATOM 140 O PHE 40 13.877 74.577 47.226 1.00 0.00 O ATOM 141 N GLY 41 14.694 76.603 46.790 1.00 0.00 N ATOM 142 CA GLY 41 15.366 76.710 48.076 1.00 0.00 C ATOM 143 C GLY 41 16.622 75.857 48.216 1.00 0.00 C ATOM 144 O GLY 41 17.027 75.529 49.354 1.00 0.00 O ATOM 145 N THR 42 17.242 75.530 47.080 1.00 0.00 N ATOM 146 CA THR 42 18.461 74.718 47.025 1.00 0.00 C ATOM 147 C THR 42 19.447 75.321 46.021 1.00 0.00 C ATOM 148 O THR 42 19.042 76.097 45.143 1.00 0.00 O ATOM 149 N ASP 43 20.729 74.959 46.125 1.00 0.00 N ATOM 150 CA ASP 43 21.745 75.614 45.314 1.00 0.00 C ATOM 151 C ASP 43 21.936 74.917 43.983 1.00 0.00 C ATOM 152 O ASP 43 21.741 73.718 43.854 1.00 0.00 O ATOM 153 N SER 44 22.282 75.713 42.986 1.00 0.00 N ATOM 154 CA SER 44 22.627 75.226 41.674 1.00 0.00 C ATOM 155 C SER 44 23.924 74.416 41.780 1.00 0.00 C ATOM 156 O SER 44 24.054 73.383 41.141 1.00 0.00 O ATOM 157 N ALA 45 24.877 74.871 42.598 1.00 0.00 N ATOM 158 CA ALA 45 26.126 74.114 42.824 1.00 0.00 C ATOM 159 C ALA 45 25.833 72.678 43.262 1.00 0.00 C ATOM 160 O ALA 45 26.472 71.742 42.745 1.00 0.00 O ATOM 161 N THR 46 24.908 72.507 44.223 1.00 0.00 N ATOM 162 CA THR 46 24.555 71.168 44.718 1.00 0.00 C ATOM 163 C THR 46 23.918 70.354 43.624 1.00 0.00 C ATOM 164 O THR 46 24.184 69.153 43.519 1.00 0.00 O ATOM 165 N PHE 47 23.054 70.985 42.835 1.00 0.00 N ATOM 166 CA PHE 47 22.389 70.281 41.727 1.00 0.00 C ATOM 167 C PHE 47 23.393 69.751 40.702 1.00 0.00 C ATOM 168 O PHE 47 23.276 68.628 40.220 1.00 0.00 O ATOM 169 N ASP 48 24.348 70.578 40.330 1.00 0.00 N ATOM 170 CA ASP 48 25.361 70.143 39.374 1.00 0.00 C ATOM 171 C ASP 48 26.146 68.912 39.873 1.00 0.00 C ATOM 172 O ASP 48 26.377 67.955 39.116 1.00 0.00 O ATOM 173 N ALA 49 26.506 68.927 41.157 1.00 0.00 N ATOM 174 CA ALA 49 27.211 67.808 41.770 1.00 0.00 C ATOM 175 C ALA 49 26.310 66.583 41.969 1.00 0.00 C ATOM 176 O ALA 49 26.798 65.465 41.896 1.00 0.00 O ATOM 177 N THR 50 25.014 66.785 42.227 1.00 0.00 N ATOM 178 CA THR 50 24.038 65.676 42.316 1.00 0.00 C ATOM 179 C THR 50 22.744 66.074 41.609 1.00 0.00 C ATOM 180 O THR 50 21.860 66.706 42.219 1.00 0.00 O ATOM 181 N GLU 51 22.630 65.724 40.330 1.00 0.00 N ATOM 182 CA GLU 51 21.448 66.118 39.539 1.00 0.00 C ATOM 183 C GLU 51 20.109 65.592 40.047 1.00 0.00 C ATOM 184 O GLU 51 19.088 66.115 39.660 1.00 0.00 O ATOM 185 N ASP 52 20.103 64.581 40.911 1.00 0.00 N ATOM 186 CA ASP 52 18.870 64.141 41.564 1.00 0.00 C ATOM 187 C ASP 52 18.437 65.051 42.716 1.00 0.00 C ATOM 188 O ASP 52 17.369 64.853 43.275 1.00 0.00 O ATOM 189 N ALA 53 19.260 66.014 43.109 1.00 0.00 N ATOM 190 CA ALA 53 18.969 66.807 44.320 1.00 0.00 C ATOM 191 C ALA 53 17.658 67.598 44.263 1.00 0.00 C ATOM 192 O ALA 53 17.057 67.868 45.315 1.00 0.00 O ATOM 193 N TYR 54 17.205 67.985 43.069 1.00 0.00 N ATOM 194 CA TYR 54 15.952 68.722 42.970 1.00 0.00 C ATOM 195 C TYR 54 14.771 67.930 43.528 1.00 0.00 C ATOM 196 O TYR 54 13.774 68.527 43.964 1.00 0.00 O ATOM 197 N PHE 55 14.857 66.601 43.524 1.00 0.00 N ATOM 198 CA PHE 55 13.756 65.770 44.060 1.00 0.00 C ATOM 199 C PHE 55 13.528 66.006 45.550 1.00 0.00 C ATOM 200 O PHE 55 12.409 65.929 46.024 1.00 0.00 O ATOM 201 N GLN 56 14.590 66.324 46.272 1.00 0.00 N ATOM 202 CA GLN 56 14.471 66.638 47.679 1.00 0.00 C ATOM 203 C GLN 56 13.727 67.927 47.962 1.00 0.00 C ATOM 204 O GLN 56 13.289 68.181 49.113 1.00 0.00 O ATOM 205 N ARG 57 13.610 68.772 46.943 1.00 0.00 N ATOM 206 CA ARG 57 12.874 69.999 47.073 1.00 0.00 C ATOM 207 C ARG 57 11.422 69.851 46.696 1.00 0.00 C ATOM 208 O ARG 57 10.690 70.831 46.742 1.00 0.00 O ATOM 209 N VAL 58 11.017 68.659 46.274 1.00 0.00 N ATOM 210 CA VAL 58 9.621 68.396 45.885 1.00 0.00 C ATOM 211 C VAL 58 8.899 67.652 46.999 1.00 0.00 C ATOM 212 O VAL 58 9.468 66.757 47.632 1.00 0.00 O ATOM 213 N HIS 59 7.665 68.057 47.282 1.00 0.00 N ATOM 214 CA HIS 59 6.878 67.457 48.345 1.00 0.00 C ATOM 215 C HIS 59 6.870 65.944 48.088 1.00 0.00 C ATOM 216 O HIS 59 6.741 65.520 46.909 1.00 0.00 O ATOM 217 N PRO 60 6.990 65.145 49.151 1.00 0.00 N ATOM 218 CA PRO 60 7.139 63.698 48.941 1.00 0.00 C ATOM 219 C PRO 60 5.958 63.055 48.187 1.00 0.00 C ATOM 220 O PRO 60 6.156 62.106 47.453 1.00 0.00 O ATOM 221 N ASP 61 4.763 63.598 48.345 1.00 0.00 N ATOM 222 CA ASP 61 3.608 63.123 47.581 1.00 0.00 C ATOM 223 C ASP 61 3.796 63.345 46.086 1.00 0.00 C ATOM 224 O ASP 61 3.481 62.461 45.298 1.00 0.00 O ATOM 225 N ASP 62 4.380 64.470 45.690 1.00 0.00 N ATOM 226 CA ASP 62 4.577 64.777 44.250 1.00 0.00 C ATOM 227 C ASP 62 5.815 64.127 43.652 1.00 0.00 C ATOM 228 O ASP 62 5.933 63.981 42.434 1.00 0.00 O ATOM 229 N ARG 63 6.751 63.713 44.503 1.00 0.00 N ATOM 230 CA ARG 63 7.858 62.849 44.010 1.00 0.00 C ATOM 231 C ARG 63 7.466 61.642 43.143 1.00 0.00 C ATOM 232 O ARG 63 8.126 61.394 42.152 1.00 0.00 O ATOM 233 N ALA 64 6.401 60.896 43.449 1.00 0.00 N ATOM 234 CA ALA 64 6.003 59.768 42.574 1.00 0.00 C ATOM 235 C ALA 64 5.321 60.203 41.289 1.00 0.00 C ATOM 236 O ALA 64 5.457 59.537 40.232 1.00 0.00 O ATOM 237 N ARG 65 4.595 61.310 41.326 1.00 0.00 N ATOM 238 CA ARG 65 4.117 61.878 40.103 1.00 0.00 C ATOM 239 C ARG 65 5.305 62.082 39.169 1.00 0.00 C ATOM 240 O ARG 65 5.139 61.964 37.954 1.00 0.00 O ATOM 241 N VAL 66 6.477 62.456 39.706 1.00 0.00 N ATOM 242 CA VAL 66 7.637 62.706 38.838 1.00 0.00 C ATOM 243 C VAL 66 8.063 61.429 38.077 1.00 0.00 C ATOM 244 O VAL 66 8.492 61.518 36.932 1.00 0.00 O ATOM 245 N ARG 67 7.949 60.261 38.713 1.00 0.00 N ATOM 246 CA ARG 67 8.231 58.974 38.043 1.00 0.00 C ATOM 247 C ARG 67 7.347 58.798 36.814 1.00 0.00 C ATOM 248 O ARG 67 7.835 58.453 35.739 1.00 0.00 O ATOM 249 N ARG 68 6.062 59.084 36.964 1.00 0.00 N ATOM 250 CA ARG 68 5.122 59.033 35.847 1.00 0.00 C ATOM 251 C ARG 68 5.513 60.043 34.760 1.00 0.00 C ATOM 252 O ARG 68 5.436 59.747 33.563 1.00 0.00 O ATOM 253 N GLU 69 5.922 61.242 35.182 1.00 0.00 N ATOM 254 CA GLU 69 6.369 62.255 34.251 1.00 0.00 C ATOM 255 C GLU 69 7.569 61.758 33.436 1.00 0.00 C ATOM 256 O GLU 69 7.554 61.857 32.199 1.00 0.00 O ATOM 257 N LEU 70 8.574 61.212 34.103 1.00 0.00 N ATOM 258 CA LEU 70 9.790 60.751 33.392 1.00 0.00 C ATOM 259 C LEU 70 9.447 59.616 32.421 1.00 0.00 C ATOM 260 O LEU 70 9.966 59.552 31.296 1.00 0.00 O ATOM 261 N ASP 71 8.579 58.709 32.869 1.00 0.00 N ATOM 262 CA ASP 71 8.130 57.636 31.998 1.00 0.00 C ATOM 263 C ASP 71 7.453 58.174 30.721 1.00 0.00 C ATOM 264 O ASP 71 7.747 57.682 29.616 1.00 0.00 O ATOM 265 N ARG 72 6.568 59.158 30.854 1.00 0.00 N ATOM 266 CA ARG 72 5.958 59.817 29.675 1.00 0.00 C ATOM 267 C ARG 72 7.000 60.365 28.712 1.00 0.00 C ATOM 268 O ARG 72 6.903 60.148 27.493 1.00 0.00 O ATOM 269 N HIS 73 8.014 61.019 29.254 1.00 0.00 N ATOM 270 CA HIS 73 9.079 61.595 28.463 1.00 0.00 C ATOM 271 C HIS 73 9.882 60.529 27.741 1.00 0.00 C ATOM 272 O HIS 73 10.227 60.677 26.612 1.00 0.00 O ATOM 273 N VAL 74 10.129 59.435 28.409 1.00 0.00 N ATOM 274 CA VAL 74 10.815 58.329 27.795 1.00 0.00 C ATOM 275 C VAL 74 10.027 57.632 26.743 1.00 0.00 C ATOM 276 O VAL 74 10.599 57.055 25.886 1.00 0.00 O ATOM 277 N LEU 75 8.718 57.724 26.811 1.00 0.00 N ATOM 278 CA LEU 75 7.851 57.204 25.786 1.00 0.00 C ATOM 279 C LEU 75 7.676 58.191 24.659 1.00 0.00 C ATOM 280 O LEU 75 6.878 57.978 23.785 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 236 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 43.75 81.0 116 100.0 116 ARMSMC SECONDARY STRUCTURE . . 26.31 92.6 68 100.0 68 ARMSMC SURFACE . . . . . . . . 36.52 82.6 92 100.0 92 ARMSMC BURIED . . . . . . . . 64.35 75.0 24 100.0 24 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 45 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 31 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 30 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 27 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.45 (Number of atoms: 59) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.45 59 100.0 59 CRMSCA CRN = ALL/NP . . . . . 0.0415 CRMSCA SECONDARY STRUCTURE . . 2.06 34 100.0 34 CRMSCA SURFACE . . . . . . . . 2.38 47 100.0 47 CRMSCA BURIED . . . . . . . . 2.69 12 100.0 12 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.43 236 81.1 291 CRMSMC SECONDARY STRUCTURE . . 1.98 136 80.0 170 CRMSMC SURFACE . . . . . . . . 2.39 188 81.0 232 CRMSMC BURIED . . . . . . . . 2.56 48 81.4 59 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 248 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 210 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 177 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 206 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 42 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.43 236 48.8 484 CRMSALL SECONDARY STRUCTURE . . 1.98 136 43.5 313 CRMSALL SURFACE . . . . . . . . 2.39 188 47.7 394 CRMSALL BURIED . . . . . . . . 2.56 48 53.3 90 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.036 1.000 0.500 59 100.0 59 ERRCA SECONDARY STRUCTURE . . 1.775 1.000 0.500 34 100.0 34 ERRCA SURFACE . . . . . . . . 1.973 1.000 0.500 47 100.0 47 ERRCA BURIED . . . . . . . . 2.283 1.000 0.500 12 100.0 12 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.008 1.000 0.500 236 81.1 291 ERRMC SECONDARY STRUCTURE . . 1.696 1.000 0.500 136 80.0 170 ERRMC SURFACE . . . . . . . . 1.961 1.000 0.500 188 81.0 232 ERRMC BURIED . . . . . . . . 2.190 1.000 0.500 48 81.4 59 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 248 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 210 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 177 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 206 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 42 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.008 1.000 0.500 236 48.8 484 ERRALL SECONDARY STRUCTURE . . 1.696 1.000 0.500 136 43.5 313 ERRALL SURFACE . . . . . . . . 1.961 1.000 0.500 188 47.7 394 ERRALL BURIED . . . . . . . . 2.190 1.000 0.500 48 53.3 90 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 14 38 45 57 59 59 59 DISTCA CA (P) 23.73 64.41 76.27 96.61 100.00 59 DISTCA CA (RMS) 0.67 1.26 1.52 2.29 2.45 DISTCA ALL (N) 65 151 177 228 236 236 484 DISTALL ALL (P) 13.43 31.20 36.57 47.11 48.76 484 DISTALL ALL (RMS) 0.72 1.22 1.47 2.26 2.43 DISTALL END of the results output