####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 52 ( 208), selected 52 , name T0596TS328_1-D1 # Molecule2: number of CA atoms 53 ( 422), selected 52 , name T0596-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0596TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 52 7 - 58 1.08 1.08 LCS_AVERAGE: 98.11 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 52 7 - 58 1.08 1.08 LCS_AVERAGE: 98.11 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 46 9 - 54 0.99 1.09 LCS_AVERAGE: 85.85 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 52 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT P 7 P 7 42 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT M 8 M 8 42 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 9 R 9 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 10 D 10 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 11 A 11 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 12 I 12 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT V 13 V 13 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 14 D 14 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT T 15 T 15 46 52 52 13 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 16 A 16 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT V 17 V 17 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 18 E 18 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 19 L 19 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 20 A 20 46 52 52 11 29 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 21 A 21 46 52 52 9 29 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT H 22 H 22 46 52 52 7 28 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT T 23 T 23 46 52 52 5 29 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT S 24 S 24 46 52 52 11 29 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT W 25 W 25 46 52 52 5 22 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 26 E 26 46 52 52 5 26 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 27 A 27 46 52 52 11 29 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT V 28 V 28 46 52 52 4 28 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 29 R 29 46 52 52 14 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 30 L 30 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT Y 31 Y 31 46 52 52 14 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 32 D 32 46 52 52 14 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 33 I 33 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 34 A 34 46 52 52 11 30 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 35 A 35 46 52 52 11 31 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 36 R 36 46 52 52 14 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 37 L 37 46 52 52 10 24 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 38 A 38 46 52 52 9 18 45 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT V 39 V 39 46 52 52 11 18 47 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT S 40 S 40 46 52 52 14 31 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 41 L 41 46 52 52 13 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 42 D 42 46 52 52 14 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 43 E 43 46 52 52 14 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 44 I 44 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 45 R 45 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 46 L 46 46 52 52 8 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT Y 47 Y 47 46 52 52 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT F 48 F 48 46 52 52 14 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 49 R 49 46 52 52 11 31 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 50 E 50 46 52 52 10 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT K 51 K 51 46 52 52 13 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 52 D 52 46 52 52 6 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 53 E 53 46 52 52 14 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 54 L 54 46 52 52 11 31 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 55 I 55 44 52 52 6 7 42 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 56 D 56 44 52 52 6 11 42 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 57 A 57 44 52 52 14 31 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT W 58 W 58 34 52 52 13 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_AVERAGE LCS_A: 94.03 ( 85.85 98.11 98.11 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 32 48 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 GDT PERCENT_AT 28.30 60.38 90.57 96.23 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 GDT RMS_LOCAL 0.33 0.65 0.97 1.05 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 GDT RMS_ALL_AT 1.49 1.22 1.09 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 1.08 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA P 7 P 7 1.359 3 0.074 0.074 1.481 81.429 46.531 LGA M 8 M 8 1.425 4 0.016 0.016 1.470 81.429 40.714 LGA R 9 R 9 1.286 7 0.028 0.028 1.404 83.690 30.433 LGA D 10 D 10 1.136 4 0.022 0.022 1.230 81.429 40.714 LGA A 11 A 11 0.965 1 0.048 0.048 1.085 88.214 70.571 LGA I 12 I 12 0.941 4 0.072 0.072 1.024 88.214 44.107 LGA V 13 V 13 0.917 3 0.044 0.044 0.942 90.476 51.701 LGA D 14 D 14 0.709 4 0.067 0.067 0.850 90.476 45.238 LGA T 15 T 15 0.790 3 0.034 0.034 0.848 90.476 51.701 LGA A 16 A 16 0.697 1 0.049 0.049 0.841 90.476 72.381 LGA V 17 V 17 0.834 3 0.044 0.044 0.834 90.476 51.701 LGA E 18 E 18 0.242 5 0.043 0.043 0.302 100.000 44.444 LGA L 19 L 19 0.438 4 0.023 0.023 0.957 95.238 47.619 LGA A 20 A 20 1.123 1 0.042 0.042 1.645 81.548 65.238 LGA A 21 A 21 1.488 1 0.165 0.165 1.622 79.286 63.429 LGA H 22 H 22 1.534 6 0.100 0.100 1.857 75.000 30.000 LGA T 23 T 23 1.180 3 0.374 0.374 2.980 73.214 41.837 LGA S 24 S 24 1.098 2 0.129 0.129 1.202 81.429 54.286 LGA W 25 W 25 1.553 10 0.064 0.064 1.553 79.286 22.653 LGA E 26 E 26 1.256 5 0.036 0.036 1.364 81.429 36.190 LGA A 27 A 27 1.118 1 0.027 0.027 1.240 81.429 65.143 LGA V 28 V 28 1.324 3 0.035 0.035 1.324 85.952 49.116 LGA R 29 R 29 0.466 7 0.021 0.021 0.899 97.619 35.498 LGA L 30 L 30 0.496 4 0.018 0.018 0.496 100.000 50.000 LGA Y 31 Y 31 0.442 8 0.039 0.039 0.453 100.000 33.333 LGA D 32 D 32 0.266 4 0.020 0.020 0.333 100.000 50.000 LGA I 33 I 33 0.710 4 0.039 0.039 0.863 90.476 45.238 LGA A 34 A 34 1.053 1 0.038 0.038 1.275 83.690 66.952 LGA A 35 A 35 0.939 1 0.070 0.070 0.939 90.476 72.381 LGA R 36 R 36 0.453 7 0.028 0.028 0.988 92.857 33.766 LGA L 37 L 37 1.524 4 0.039 0.039 1.996 75.000 37.500 LGA A 38 A 38 1.970 1 0.059 0.059 2.085 70.833 56.667 LGA V 39 V 39 1.678 3 0.046 0.046 1.678 77.143 44.082 LGA S 40 S 40 0.871 2 0.073 0.073 1.062 88.214 58.810 LGA L 41 L 41 0.375 4 0.042 0.042 0.428 100.000 50.000 LGA D 42 D 42 0.197 4 0.065 0.065 0.596 97.619 48.810 LGA E 43 E 43 0.602 5 0.032 0.032 0.887 92.857 41.270 LGA I 44 I 44 0.533 4 0.033 0.033 0.999 92.857 46.429 LGA R 45 R 45 0.900 7 0.044 0.044 1.070 85.952 31.255 LGA L 46 L 46 1.072 4 0.034 0.034 1.072 88.214 44.107 LGA Y 47 Y 47 0.434 8 0.060 0.060 0.554 97.619 32.540 LGA F 48 F 48 0.454 7 0.071 0.071 0.849 95.238 34.632 LGA R 49 R 49 1.290 7 0.062 0.062 1.290 85.952 31.255 LGA E 50 E 50 0.962 5 0.094 0.094 0.962 90.476 40.212 LGA K 51 K 51 1.066 5 0.072 0.072 1.069 81.429 36.190 LGA D 52 D 52 1.199 4 0.049 0.049 1.199 85.952 42.976 LGA E 53 E 53 0.778 5 0.068 0.068 0.824 92.857 41.270 LGA L 54 L 54 0.945 4 0.074 0.074 1.169 88.333 44.167 LGA I 55 I 55 2.054 4 0.070 0.070 2.054 70.833 35.417 LGA D 56 D 56 1.888 4 0.079 0.079 1.888 77.143 38.571 LGA A 57 A 57 0.842 1 0.042 0.042 0.885 92.857 74.286 LGA W 58 W 58 1.227 10 0.048 0.048 1.227 85.952 24.558 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 52 208 208 100.00 414 208 50.24 53 SUMMARY(RMSD_GDC): 1.079 1.046 1.046 85.642 45.055 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 52 53 4.0 52 1.08 88.208 94.439 4.411 LGA_LOCAL RMSD: 1.079 Number of atoms: 52 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.079 Number of assigned atoms: 52 Std_ASGN_ATOMS RMSD: 1.079 Standard rmsd on all 52 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.454957 * X + 0.738434 * Y + 0.497724 * Z + -17.017271 Y_new = 0.741242 * X + -0.004264 * Y + -0.671225 * Z + 37.415604 Z_new = -0.493533 * X + 0.674312 * Y + -0.549298 * Z + 45.725796 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.020308 0.516147 2.254379 [DEG: 58.4594 29.5730 129.1664 ] ZXZ: 0.638050 2.152320 -0.631820 [DEG: 36.5576 123.3189 -36.2006 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0596TS328_1-D1 REMARK 2: T0596-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0596TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 52 53 4.0 52 1.08 94.439 1.08 REMARK ---------------------------------------------------------- MOLECULE T0596TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0596 REMARK MODEL 1 REMARK PARENT 3lhq_B ATOM 1 N PRO 7 52.339 44.138 43.443 1.00 3.00 N ATOM 2 CA PRO 7 52.404 43.516 44.773 1.00 3.00 C ATOM 3 C PRO 7 51.171 43.869 45.586 1.00 3.00 C ATOM 4 O PRO 7 50.593 43.011 46.253 1.00 3.00 O ATOM 5 N MET 8 50.771 45.136 45.538 1.00 3.00 N ATOM 6 CA MET 8 49.534 45.548 46.191 1.00 3.00 C ATOM 7 C MET 8 48.330 44.858 45.529 1.00 3.00 C ATOM 8 O MET 8 47.432 44.365 46.191 1.00 3.00 O ATOM 9 N ARG 9 48.290 44.845 44.196 1.00 3.00 N ATOM 10 CA ARG 9 47.179 44.184 43.472 1.00 3.00 C ATOM 11 C ARG 9 47.072 42.741 43.924 1.00 3.00 C ATOM 12 O ARG 9 45.977 42.212 44.107 1.00 3.00 O ATOM 13 N ASP 10 48.216 42.094 44.040 1.00 3.00 N ATOM 14 CA ASP 10 48.207 40.685 44.399 1.00 3.00 C ATOM 15 C ASP 10 47.820 40.451 45.870 1.00 3.00 C ATOM 16 O ASP 10 47.106 39.504 46.158 1.00 3.00 O ATOM 17 N ALA 11 48.268 41.307 46.766 1.00 3.00 N ATOM 18 CA ALA 11 47.774 41.259 48.159 1.00 3.00 C ATOM 19 C ALA 11 46.255 41.420 48.215 1.00 3.00 C ATOM 20 O ALA 11 45.616 40.686 48.950 1.00 3.00 O ATOM 21 N ILE 12 45.700 42.357 47.434 1.00 3.00 N ATOM 22 CA ILE 12 44.270 42.534 47.319 1.00 3.00 C ATOM 23 C ILE 12 43.599 41.240 46.858 1.00 3.00 C ATOM 24 O ILE 12 42.570 40.822 47.425 1.00 3.00 O ATOM 25 N VAL 13 44.160 40.626 45.796 1.00 3.00 N ATOM 26 CA VAL 13 43.581 39.390 45.258 1.00 3.00 C ATOM 27 C VAL 13 43.636 38.278 46.323 1.00 3.00 C ATOM 28 O VAL 13 42.602 37.595 46.495 1.00 3.00 O ATOM 29 N ASP 14 44.752 38.132 47.046 1.00 3.00 N ATOM 30 CA ASP 14 44.905 37.042 48.083 1.00 3.00 C ATOM 31 C ASP 14 43.943 37.284 49.282 1.00 3.00 C ATOM 32 O ASP 14 43.328 36.372 49.825 1.00 3.00 O ATOM 33 N THR 15 43.817 38.528 49.700 1.00 3.00 N ATOM 34 CA THR 15 42.902 38.886 50.749 1.00 3.00 C ATOM 35 C THR 15 41.439 38.681 50.304 1.00 3.00 C ATOM 36 O THR 15 40.657 38.141 51.083 1.00 3.00 O ATOM 37 N ALA 16 41.109 39.044 49.053 1.00 3.00 N ATOM 38 CA ALA 16 39.778 38.750 48.518 1.00 3.00 C ATOM 39 C ALA 16 39.465 37.274 48.558 1.00 3.00 C ATOM 40 O ALA 16 38.371 36.874 48.987 1.00 3.00 O ATOM 41 N VAL 17 40.416 36.436 48.183 1.00 3.00 N ATOM 42 CA VAL 17 40.173 34.999 48.291 1.00 3.00 C ATOM 43 C VAL 17 39.862 34.566 49.690 1.00 3.00 C ATOM 44 O VAL 17 38.939 33.777 49.931 1.00 3.00 O ATOM 45 N GLU 18 40.620 35.077 50.654 1.00 3.00 N ATOM 46 CA GLU 18 40.402 34.666 52.046 1.00 3.00 C ATOM 47 C GLU 18 39.018 35.159 52.529 1.00 3.00 C ATOM 48 O GLU 18 38.253 34.407 53.093 1.00 3.00 O ATOM 49 N LEU 19 38.668 36.412 52.219 1.00 3.00 N ATOM 50 CA LEU 19 37.365 36.971 52.550 1.00 3.00 C ATOM 51 C LEU 19 36.206 36.265 51.870 1.00 3.00 C ATOM 52 O LEU 19 35.227 35.924 52.508 1.00 3.00 O ATOM 53 N ALA 20 36.312 36.070 50.565 1.00 3.00 N ATOM 54 CA ALA 20 35.234 35.422 49.831 1.00 3.00 C ATOM 55 C ALA 20 35.024 34.015 50.342 1.00 3.00 C ATOM 56 O ALA 20 33.882 33.507 50.454 1.00 3.00 O ATOM 57 N ALA 21 36.136 33.329 50.656 1.00 3.00 N ATOM 58 CA ALA 21 36.018 31.935 51.072 1.00 3.00 C ATOM 59 C ALA 21 35.326 31.799 52.421 1.00 3.00 C ATOM 60 O ALA 21 34.674 30.786 52.643 1.00 3.00 O ATOM 61 N HIS 22 35.431 32.819 53.278 1.00 3.00 N ATOM 62 CA HIS 22 34.881 32.797 54.645 1.00 3.00 C ATOM 63 C HIS 22 33.436 33.357 54.673 1.00 3.00 C ATOM 64 O HIS 22 32.539 32.776 55.271 1.00 3.00 O ATOM 65 N THR 23 33.219 34.452 53.963 1.00 3.00 N ATOM 66 CA THR 23 31.991 35.252 54.021 1.00 3.00 C ATOM 67 C THR 23 31.086 35.098 52.818 1.00 3.00 C ATOM 68 O THR 23 29.903 35.506 52.850 1.00 3.00 O ATOM 69 N SER 24 31.627 34.575 51.726 1.00 3.00 N ATOM 70 CA SER 24 30.880 34.532 50.453 1.00 3.00 C ATOM 71 C SER 24 31.073 35.760 49.609 1.00 3.00 C ATOM 72 O SER 24 31.350 36.858 50.133 1.00 3.00 O ATOM 73 N TRP 25 30.919 35.633 48.300 1.00 3.00 N ATOM 74 CA TRP 25 31.074 36.772 47.402 1.00 3.00 C ATOM 75 C TRP 25 29.961 37.799 47.621 1.00 3.00 C ATOM 76 O TRP 25 30.247 38.987 47.731 1.00 3.00 O ATOM 77 N GLU 26 28.726 37.369 47.821 1.00 3.00 N ATOM 78 CA GLU 26 27.609 38.308 47.833 1.00 3.00 C ATOM 79 C GLU 26 27.721 39.309 49.022 1.00 3.00 C ATOM 80 O GLU 26 27.409 40.508 48.843 1.00 3.00 O ATOM 81 N ALA 27 28.149 38.830 50.197 1.00 3.00 N ATOM 82 CA ALA 27 28.322 39.636 51.424 1.00 3.00 C ATOM 83 C ALA 27 29.537 40.518 51.470 1.00 3.00 C ATOM 84 O ALA 27 29.641 41.383 52.344 1.00 3.00 O ATOM 85 N VAL 28 30.492 40.247 50.605 1.00 3.00 N ATOM 86 CA VAL 28 31.803 40.862 50.726 1.00 3.00 C ATOM 87 C VAL 28 31.890 42.011 49.789 1.00 3.00 C ATOM 88 O VAL 28 31.775 41.845 48.578 1.00 3.00 O ATOM 89 N ARG 29 32.096 43.208 50.317 1.00 3.00 N ATOM 90 CA ARG 29 32.280 44.342 49.421 1.00 3.00 C ATOM 91 C ARG 29 33.749 44.618 49.096 1.00 3.00 C ATOM 92 O ARG 29 34.669 44.234 49.860 1.00 3.00 O ATOM 93 N LEU 30 33.957 45.332 48.002 1.00 3.00 N ATOM 94 CA LEU 30 35.303 45.826 47.643 1.00 3.00 C ATOM 95 C LEU 30 35.866 46.697 48.774 1.00 3.00 C ATOM 96 O LEU 30 37.069 46.608 49.107 1.00 3.00 O ATOM 97 N TYR 31 35.022 47.510 49.399 1.00 3.00 N ATOM 98 CA TYR 31 35.472 48.287 50.574 1.00 3.00 C ATOM 99 C TYR 31 36.003 47.433 51.706 1.00 3.00 C ATOM 100 O TYR 31 37.038 47.772 52.332 1.00 3.00 O ATOM 101 N ASP 32 35.321 46.314 51.998 1.00 3.00 N ATOM 102 CA ASP 32 35.748 45.393 53.035 1.00 3.00 C ATOM 103 C ASP 32 37.113 44.818 52.643 1.00 3.00 C ATOM 104 O ASP 32 38.025 44.681 53.464 1.00 3.00 O ATOM 105 N ILE 33 37.218 44.450 51.364 1.00 3.00 N ATOM 106 CA ILE 33 38.480 43.840 50.872 1.00 3.00 C ATOM 107 C ILE 33 39.631 44.857 50.978 1.00 3.00 C ATOM 108 O ILE 33 40.732 44.502 51.460 1.00 3.00 O ATOM 109 N ALA 34 39.390 46.130 50.592 1.00 3.00 N ATOM 110 CA ALA 34 40.359 47.178 50.802 1.00 3.00 C ATOM 111 C ALA 34 40.830 47.297 52.246 1.00 3.00 C ATOM 112 O ALA 34 42.037 47.309 52.519 1.00 3.00 O ATOM 113 N ALA 35 39.876 47.373 53.161 1.00 3.00 N ATOM 114 CA ALA 35 40.206 47.495 54.586 1.00 3.00 C ATOM 115 C ALA 35 41.075 46.337 55.011 1.00 3.00 C ATOM 116 O ALA 35 42.127 46.531 55.637 1.00 3.00 O ATOM 117 N ARG 36 40.671 45.120 54.653 1.00 3.00 N ATOM 118 CA ARG 36 41.418 43.932 55.046 1.00 3.00 C ATOM 119 C ARG 36 42.796 43.893 54.433 1.00 3.00 C ATOM 120 O ARG 36 43.718 43.328 55.017 1.00 3.00 O ATOM 121 N LEU 37 42.931 44.430 53.207 1.00 3.00 N ATOM 122 CA LEU 37 44.233 44.444 52.524 1.00 3.00 C ATOM 123 C LEU 37 45.128 45.619 52.956 1.00 3.00 C ATOM 124 O LEU 37 46.239 45.743 52.479 1.00 3.00 O ATOM 125 N ALA 38 44.609 46.513 53.811 1.00 3.00 N ATOM 126 CA ALA 38 45.289 47.705 54.220 1.00 3.00 C ATOM 127 C ALA 38 45.499 48.730 53.151 1.00 3.00 C ATOM 128 O ALA 38 46.524 49.400 53.120 1.00 3.00 O ATOM 129 N VAL 39 44.520 48.854 52.266 1.00 3.00 N ATOM 130 CA VAL 39 44.566 49.864 51.217 1.00 3.00 C ATOM 131 C VAL 39 43.282 50.697 51.319 1.00 3.00 C ATOM 132 O VAL 39 42.273 50.282 51.953 1.00 3.00 O ATOM 133 N SER 40 43.323 51.896 50.765 1.00 3.00 N ATOM 134 CA SER 40 42.167 52.761 50.749 1.00 3.00 C ATOM 135 C SER 40 41.113 52.236 49.745 1.00 3.00 C ATOM 136 O SER 40 41.411 51.492 48.807 1.00 3.00 O ATOM 137 N LEU 41 39.868 52.668 49.937 1.00 3.00 N ATOM 138 CA LEU 41 38.806 52.342 49.001 1.00 3.00 C ATOM 139 C LEU 41 39.187 52.921 47.640 1.00 3.00 C ATOM 140 O LEU 41 38.962 52.315 46.618 1.00 3.00 O ATOM 141 N ASP 42 39.759 54.108 47.627 1.00 3.00 N ATOM 142 CA ASP 42 40.235 54.652 46.384 1.00 3.00 C ATOM 143 C ASP 42 41.175 53.706 45.652 1.00 3.00 C ATOM 144 O ASP 42 41.080 53.524 44.430 1.00 3.00 O ATOM 145 N GLU 43 42.101 53.114 46.384 1.00 3.00 N ATOM 146 CA GLU 43 43.054 52.195 45.778 1.00 3.00 C ATOM 147 C GLU 43 42.412 50.933 45.236 1.00 3.00 C ATOM 148 O GLU 43 42.712 50.507 44.107 1.00 3.00 O ATOM 149 N ILE 44 41.522 50.299 45.973 1.00 3.00 N ATOM 150 CA ILE 44 40.974 49.051 45.437 1.00 3.00 C ATOM 151 C ILE 44 40.118 49.302 44.188 1.00 3.00 C ATOM 152 O ILE 44 40.146 48.479 43.279 1.00 3.00 O ATOM 153 N ARG 45 39.399 50.430 44.104 1.00 3.00 N ATOM 154 CA ARG 45 38.508 50.669 42.969 1.00 3.00 C ATOM 155 C ARG 45 39.316 51.109 41.764 1.00 3.00 C ATOM 156 O ARG 45 38.857 50.954 40.604 1.00 3.00 O ATOM 157 N LEU 46 40.542 51.567 41.994 1.00 3.00 N ATOM 158 CA LEU 46 41.449 51.743 40.894 1.00 3.00 C ATOM 159 C LEU 46 41.828 50.417 40.218 1.00 3.00 C ATOM 160 O LEU 46 41.830 50.334 38.970 1.00 3.00 O ATOM 161 N TYR 47 42.189 49.391 41.019 1.00 3.00 N ATOM 162 CA TYR 47 42.517 48.073 40.479 1.00 3.00 C ATOM 163 C TYR 47 41.317 47.329 39.897 1.00 3.00 C ATOM 164 O TYR 47 41.446 46.649 38.868 1.00 3.00 O ATOM 165 N PHE 48 40.168 47.394 40.559 1.00 3.00 N ATOM 166 CA PHE 48 39.027 46.586 40.181 1.00 3.00 C ATOM 167 C PHE 48 37.724 47.382 40.201 1.00 3.00 C ATOM 168 O PHE 48 37.470 48.078 41.158 1.00 3.00 O ATOM 169 N ARG 49 36.864 47.220 39.202 1.00 3.00 N ATOM 170 CA ARG 49 35.593 47.995 39.109 1.00 3.00 C ATOM 171 C ARG 49 34.546 47.320 39.950 1.00 3.00 C ATOM 172 O ARG 49 33.605 47.953 40.411 1.00 3.00 O ATOM 173 N GLU 50 34.679 45.995 40.097 1.00 3.00 N ATOM 174 CA GLU 50 33.688 45.277 40.818 1.00 3.00 C ATOM 175 C GLU 50 34.230 43.924 41.231 1.00 3.00 C ATOM 176 O GLU 50 35.315 43.594 40.840 1.00 3.00 O ATOM 177 N LYS 51 33.484 43.212 42.065 1.00 3.00 N ATOM 178 CA LYS 51 33.932 41.954 42.657 1.00 3.00 C ATOM 179 C LYS 51 34.149 40.909 41.603 1.00 3.00 C ATOM 180 O LYS 51 35.026 40.045 41.785 1.00 3.00 O ATOM 181 N ASP 52 33.315 40.916 40.559 1.00 3.00 N ATOM 182 CA ASP 52 33.393 39.884 39.516 1.00 3.00 C ATOM 183 C ASP 52 34.658 40.012 38.697 1.00 3.00 C ATOM 184 O ASP 52 35.297 39.008 38.385 1.00 3.00 O ATOM 185 N GLU 53 35.021 41.237 38.365 1.00 3.00 N ATOM 186 CA GLU 53 36.268 41.485 37.666 1.00 3.00 C ATOM 187 C GLU 53 37.426 40.967 38.535 1.00 3.00 C ATOM 188 O GLU 53 38.403 40.360 38.031 1.00 3.00 O ATOM 189 N LEU 54 37.337 41.236 39.842 1.00 3.00 N ATOM 190 CA LEU 54 38.402 40.788 40.745 1.00 3.00 C ATOM 191 C LEU 54 38.439 39.248 40.801 1.00 3.00 C ATOM 192 O LEU 54 39.498 38.615 40.659 1.00 3.00 O ATOM 193 N ILE 55 37.294 38.653 41.020 1.00 3.00 N ATOM 194 CA ILE 55 37.247 37.195 41.065 1.00 3.00 C ATOM 195 C ILE 55 37.687 36.550 39.754 1.00 3.00 C ATOM 196 O ILE 55 38.456 35.566 39.745 1.00 3.00 O ATOM 197 N ASP 56 37.226 37.093 38.640 1.00 3.00 N ATOM 198 CA ASP 56 37.609 36.599 37.322 1.00 3.00 C ATOM 199 C ASP 56 39.113 36.602 37.118 1.00 3.00 C ATOM 200 O ASP 56 39.690 35.656 36.619 1.00 3.00 O ATOM 201 N ALA 57 39.785 37.636 37.615 1.00 3.00 N ATOM 202 CA ALA 57 41.215 37.740 37.472 1.00 3.00 C ATOM 203 C ALA 57 41.949 36.630 38.247 1.00 3.00 C ATOM 204 O ALA 57 42.914 36.031 37.760 1.00 3.00 O ATOM 205 N TRP 58 41.522 36.353 39.471 1.00 3.00 N ATOM 206 CA TRP 58 42.170 35.323 40.197 1.00 3.00 C ATOM 207 C TRP 58 41.860 33.954 39.564 1.00 3.00 C ATOM 208 O TRP 58 42.718 33.077 39.523 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 208 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 16.68 97.1 102 98.1 104 ARMSMC SECONDARY STRUCTURE . . 9.85 98.6 73 98.6 74 ARMSMC SURFACE . . . . . . . . 18.75 96.1 76 97.4 78 ARMSMC BURIED . . . . . . . . 8.00 100.0 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 43 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 39 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 35 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 28 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.08 (Number of atoms: 52) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.08 52 98.1 53 CRMSCA CRN = ALL/NP . . . . . 0.0207 CRMSCA SECONDARY STRUCTURE . . 0.99 37 100.0 37 CRMSCA SURFACE . . . . . . . . 1.15 39 97.5 40 CRMSCA BURIED . . . . . . . . 0.85 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.05 208 78.5 265 CRMSMC SECONDARY STRUCTURE . . 0.95 148 80.0 185 CRMSMC SURFACE . . . . . . . . 1.10 156 78.0 200 CRMSMC BURIED . . . . . . . . 0.85 52 80.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 210 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 186 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 136 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 167 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 43 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.05 208 49.3 422 CRMSALL SECONDARY STRUCTURE . . 0.95 148 52.1 284 CRMSALL SURFACE . . . . . . . . 1.10 156 47.7 327 CRMSALL BURIED . . . . . . . . 0.85 52 54.7 95 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.017 0.525 0.604 52 98.1 53 ERRCA SECONDARY STRUCTURE . . 2.105 0.559 0.632 37 100.0 37 ERRCA SURFACE . . . . . . . . 1.957 0.505 0.585 39 97.5 40 ERRCA BURIED . . . . . . . . 2.198 0.586 0.660 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.054 0.539 0.616 208 78.5 265 ERRMC SECONDARY STRUCTURE . . 2.137 0.570 0.643 148 80.0 185 ERRMC SURFACE . . . . . . . . 2.007 0.524 0.602 156 78.0 200 ERRMC BURIED . . . . . . . . 2.195 0.585 0.657 52 80.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 210 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 186 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 136 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 167 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 43 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.054 0.539 0.616 208 49.3 422 ERRALL SECONDARY STRUCTURE . . 2.137 0.570 0.643 148 52.1 284 ERRALL SURFACE . . . . . . . . 2.007 0.524 0.602 156 47.7 327 ERRALL BURIED . . . . . . . . 2.195 0.585 0.657 52 54.7 95 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 28 51 52 52 52 52 53 DISTCA CA (P) 52.83 96.23 98.11 98.11 98.11 53 DISTCA CA (RMS) 0.69 1.05 1.08 1.08 1.08 DISTCA ALL (N) 119 205 208 208 208 208 422 DISTALL ALL (P) 28.20 48.58 49.29 49.29 49.29 422 DISTALL ALL (RMS) 0.68 1.01 1.05 1.05 1.05 DISTALL END of the results output