####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 53 ( 212), selected 52 , name T0596AL396_1-D1 # Molecule2: number of CA atoms 53 ( 422), selected 52 , name T0596-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0596AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 52 6 - 58 2.18 2.18 LCS_AVERAGE: 98.11 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 49 9 - 58 1.96 2.20 LCS_AVERAGE: 89.08 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 18 - 58 0.90 2.32 LCS_AVERAGE: 63.57 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 52 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 6 D 6 12 18 52 8 12 14 17 21 33 44 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT P 7 P 7 12 18 52 5 12 12 12 28 32 45 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT M 8 M 8 12 18 52 10 12 12 12 36 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 9 R 9 12 49 52 10 12 12 12 16 20 41 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 10 D 10 12 49 52 10 12 12 17 27 42 45 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 11 A 11 12 49 52 10 12 12 12 20 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 12 I 12 12 49 52 10 12 12 12 16 29 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT V 13 V 13 12 49 52 10 12 12 13 19 31 44 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 14 D 14 12 49 52 10 12 12 24 35 42 45 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT T 15 T 15 12 49 52 10 12 12 12 21 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 16 A 16 12 49 52 10 12 12 12 25 29 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT V 17 V 17 20 49 52 10 12 12 13 21 39 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 18 E 18 40 49 52 6 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 19 L 19 40 49 52 7 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 20 A 20 40 49 52 9 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 21 A 21 40 49 52 9 27 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT H 22 H 22 40 49 52 9 27 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT T 23 T 23 40 49 52 4 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT S 24 S 24 40 49 52 9 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT W 25 W 25 40 49 52 9 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 26 E 26 40 49 52 9 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 27 A 27 40 49 52 4 29 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT V 28 V 28 40 49 52 10 27 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 29 R 29 40 49 52 11 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT Y 31 Y 31 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 32 D 32 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 33 I 33 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 34 A 34 40 49 52 11 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 35 A 35 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 36 R 36 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 37 L 37 40 49 52 10 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 38 A 38 40 49 52 7 27 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT V 39 V 39 40 49 52 10 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT S 40 S 40 40 49 52 11 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 41 L 41 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 42 D 42 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 43 E 43 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 44 I 44 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 45 R 45 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 46 L 46 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT Y 47 Y 47 40 49 52 9 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT F 48 F 48 40 49 52 5 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 49 R 49 40 49 52 5 8 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 50 E 50 40 49 52 7 13 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT K 51 K 51 40 49 52 9 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 52 D 52 40 49 52 9 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 53 E 53 40 49 52 11 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 54 L 54 40 49 52 9 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 55 I 55 40 49 52 9 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 56 D 56 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 57 A 57 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT W 58 W 58 40 49 52 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 LCS_AVERAGE LCS_A: 83.59 ( 63.57 89.08 98.11 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 30 39 40 40 42 46 48 52 52 52 52 52 52 52 52 52 52 52 52 GDT PERCENT_AT 22.64 56.60 73.58 75.47 75.47 79.25 86.79 90.57 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 GDT RMS_LOCAL 0.31 0.69 0.88 0.90 0.90 1.18 1.62 1.91 2.18 2.18 2.18 2.18 2.18 2.18 2.18 2.18 2.18 2.18 2.18 2.18 GDT RMS_ALL_AT 2.39 2.33 2.33 2.32 2.32 2.29 2.27 2.20 2.18 2.18 2.18 2.18 2.18 2.18 2.18 2.18 2.18 2.18 2.18 2.18 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 6 D 6 4.808 4 0.360 0.360 5.188 37.738 18.869 LGA P 7 P 7 4.541 3 0.063 0.063 4.541 37.381 21.361 LGA M 8 M 8 3.871 4 0.045 0.045 4.115 46.905 23.452 LGA R 9 R 9 4.774 7 0.157 0.157 4.774 38.810 14.113 LGA D 10 D 10 3.617 4 0.122 0.122 3.617 50.119 25.060 LGA A 11 A 11 3.485 1 0.038 0.038 3.644 52.024 41.619 LGA I 12 I 12 4.500 4 0.035 0.035 4.500 42.024 21.012 LGA V 13 V 13 4.222 3 0.065 0.065 4.222 46.786 26.735 LGA D 14 D 14 3.529 4 0.018 0.018 3.529 51.905 25.952 LGA T 15 T 15 3.709 3 0.040 0.040 3.709 50.357 28.776 LGA A 16 A 16 4.331 1 0.041 0.041 4.331 45.119 36.095 LGA V 17 V 17 3.460 3 0.015 0.015 3.460 55.357 31.633 LGA E 18 E 18 0.790 5 0.178 0.178 0.790 92.857 41.270 LGA L 19 L 19 0.611 4 0.031 0.031 0.848 95.238 47.619 LGA A 20 A 20 0.702 1 0.171 0.171 1.514 83.810 67.048 LGA A 21 A 21 1.372 1 0.057 0.057 1.372 81.429 65.143 LGA H 22 H 22 1.236 6 0.034 0.034 1.236 81.429 32.571 LGA T 23 T 23 0.906 3 0.337 0.337 2.390 81.786 46.735 LGA S 24 S 24 1.010 2 0.199 0.199 1.467 83.690 55.794 LGA W 25 W 25 1.222 10 0.082 0.082 1.222 83.690 23.912 LGA E 26 E 26 1.184 5 0.067 0.067 1.212 81.429 36.190 LGA A 27 A 27 1.561 1 0.243 0.243 1.778 75.000 60.000 LGA V 28 V 28 1.565 3 0.027 0.027 1.575 79.405 45.374 LGA R 29 R 29 0.909 7 0.057 0.057 0.982 90.476 32.900 LGA Y 31 Y 31 0.610 8 0.020 0.020 0.687 90.476 30.159 LGA D 32 D 32 0.538 4 0.028 0.028 0.595 92.857 46.429 LGA I 33 I 33 0.823 4 0.048 0.048 0.823 90.476 45.238 LGA A 34 A 34 0.804 1 0.015 0.015 0.898 90.476 72.381 LGA A 35 A 35 0.438 1 0.074 0.074 0.438 100.000 80.000 LGA R 36 R 36 0.269 7 0.056 0.056 0.535 97.619 35.498 LGA L 37 L 37 1.152 4 0.136 0.136 1.741 81.548 40.774 LGA A 38 A 38 1.779 1 0.021 0.021 2.255 72.976 58.381 LGA V 39 V 39 1.583 3 0.124 0.124 1.583 79.286 45.306 LGA S 40 S 40 0.981 2 0.052 0.052 1.134 88.214 58.810 LGA L 41 L 41 0.331 4 0.059 0.059 0.911 92.857 46.429 LGA D 42 D 42 1.016 4 0.079 0.079 1.443 83.690 41.845 LGA E 43 E 43 1.106 5 0.087 0.087 1.245 85.952 38.201 LGA I 44 I 44 0.832 4 0.067 0.067 1.072 88.214 44.107 LGA R 45 R 45 1.106 7 0.094 0.094 1.621 79.286 28.831 LGA L 46 L 46 1.096 4 0.081 0.081 1.249 81.429 40.714 LGA Y 47 Y 47 1.145 8 0.062 0.062 1.778 79.286 26.429 LGA F 48 F 48 1.337 7 0.035 0.035 1.431 81.429 29.610 LGA R 49 R 49 1.735 7 0.450 0.450 3.235 67.143 24.416 LGA E 50 E 50 1.552 5 0.108 0.108 1.552 81.548 36.243 LGA K 51 K 51 0.864 5 0.073 0.073 1.019 88.214 39.206 LGA D 52 D 52 0.862 4 0.097 0.097 0.862 90.476 45.238 LGA E 53 E 53 0.991 5 0.047 0.047 1.138 85.952 38.201 LGA L 54 L 54 0.971 4 0.031 0.031 1.010 88.214 44.107 LGA I 55 I 55 1.174 4 0.026 0.026 1.280 83.690 41.845 LGA D 56 D 56 1.226 4 0.022 0.022 1.317 81.429 40.714 LGA A 57 A 57 1.167 1 0.101 0.101 1.440 81.429 65.143 LGA W 58 W 58 1.267 10 0.033 0.033 1.603 77.143 22.041 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 52 208 208 100.00 414 208 50.24 53 SUMMARY(RMSD_GDC): 2.181 1.971 1.971 74.454 39.161 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 53 53 4.0 48 1.91 80.189 85.469 2.383 LGA_LOCAL RMSD: 1.915 Number of atoms: 48 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.195 Number of assigned atoms: 52 Std_ASGN_ATOMS RMSD: 2.181 Standard rmsd on all 52 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.048892 * X + -0.667411 * Y + 0.743083 * Z + -28.963287 Y_new = 0.854498 * X + 0.413155 * Y + 0.314858 * Z + -50.396473 Z_new = -0.517148 * X + 0.619569 * Y + 0.590501 * Z + -59.468349 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.513641 0.543516 0.809415 [DEG: 86.7253 31.1411 46.3761 ] ZXZ: 1.971581 0.939116 -0.695538 [DEG: 112.9633 53.8074 -39.8514 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0596AL396_1-D1 REMARK 2: T0596-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0596AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 53 53 4.0 48 1.91 85.469 2.18 REMARK ---------------------------------------------------------- MOLECULE T0596AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3c07_B ATOM 1 N ASN 5 54.400 47.552 44.873 1.00 0.00 N ATOM 2 CA ASN 5 54.492 47.491 43.386 1.00 0.00 C ATOM 3 C ASN 5 53.150 47.029 42.857 1.00 0.00 C ATOM 4 O ASN 5 52.649 45.999 43.284 1.00 0.00 O ATOM 5 N ASP 6 52.563 47.785 41.934 1.00 0.00 N ATOM 6 CA ASP 6 51.162 47.545 41.504 1.00 0.00 C ATOM 7 C ASP 6 50.929 46.095 41.155 1.00 0.00 C ATOM 8 O ASP 6 49.983 45.468 41.650 1.00 0.00 O ATOM 9 N PRO 7 51.819 45.558 40.326 1.00 0.00 N ATOM 10 CA PRO 7 51.724 44.184 39.899 1.00 0.00 C ATOM 11 C PRO 7 51.754 43.263 41.141 1.00 0.00 C ATOM 12 O PRO 7 51.269 42.122 41.098 1.00 0.00 O ATOM 13 N MET 8 52.275 43.796 42.254 1.00 0.00 N ATOM 14 CA MET 8 52.506 43.024 43.488 1.00 0.00 C ATOM 15 C MET 8 51.468 43.277 44.623 1.00 0.00 C ATOM 16 O MET 8 50.956 42.334 45.233 1.00 0.00 O ATOM 17 N ARG 9 51.107 44.531 44.881 1.00 0.00 N ATOM 18 CA ARG 9 50.021 44.756 45.839 1.00 0.00 C ATOM 19 C ARG 9 48.669 44.334 45.255 1.00 0.00 C ATOM 20 O ARG 9 47.689 44.171 45.981 1.00 0.00 O ATOM 21 N ASP 10 48.635 44.156 43.939 1.00 0.00 N ATOM 22 CA ASP 10 47.498 43.557 43.270 1.00 0.00 C ATOM 23 C ASP 10 47.267 42.123 43.797 1.00 0.00 C ATOM 24 O ASP 10 46.197 41.820 44.329 1.00 0.00 O ATOM 25 N ALA 11 48.271 41.255 43.682 1.00 0.00 N ATOM 26 CA ALA 11 48.135 39.888 44.174 1.00 0.00 C ATOM 27 C ALA 11 47.860 39.834 45.681 1.00 0.00 C ATOM 28 O ALA 11 47.222 38.890 46.150 1.00 0.00 O ATOM 29 N ILE 12 48.311 40.834 46.430 1.00 0.00 N ATOM 30 CA ILE 12 47.929 40.950 47.836 1.00 0.00 C ATOM 31 C ILE 12 46.409 40.970 48.001 1.00 0.00 C ATOM 32 O ILE 12 45.838 40.161 48.731 1.00 0.00 O ATOM 33 N VAL 13 45.769 41.906 47.309 1.00 0.00 N ATOM 34 CA VAL 13 44.320 42.110 47.371 1.00 0.00 C ATOM 35 C VAL 13 43.508 40.909 46.852 1.00 0.00 C ATOM 36 O VAL 13 42.519 40.513 47.470 1.00 0.00 O ATOM 37 N ASP 14 43.918 40.337 45.717 1.00 0.00 N ATOM 38 CA ASP 14 43.282 39.140 45.217 1.00 0.00 C ATOM 39 C ASP 14 43.268 38.117 46.341 1.00 0.00 C ATOM 40 O ASP 14 42.273 37.428 46.555 1.00 0.00 O ATOM 41 N THR 15 44.364 38.040 47.076 1.00 0.00 N ATOM 42 CA THR 15 44.491 37.016 48.084 1.00 0.00 C ATOM 43 C THR 15 43.591 37.276 49.278 1.00 0.00 C ATOM 44 O THR 15 42.963 36.354 49.792 1.00 0.00 O ATOM 45 N ALA 16 43.490 38.534 49.694 1.00 0.00 N ATOM 46 CA ALA 16 42.687 38.864 50.883 1.00 0.00 C ATOM 47 C ALA 16 41.188 38.714 50.586 1.00 0.00 C ATOM 48 O ALA 16 40.408 38.336 51.470 1.00 0.00 O ATOM 49 N VAL 17 40.823 38.947 49.325 1.00 0.00 N ATOM 50 CA VAL 17 39.461 38.769 48.855 1.00 0.00 C ATOM 51 C VAL 17 39.137 37.279 48.736 1.00 0.00 C ATOM 52 O VAL 17 38.102 36.834 49.229 1.00 0.00 O ATOM 53 N GLU 18 40.353 34.675 50.258 1.00 0.00 N ATOM 54 CA GLU 18 40.120 34.142 51.600 1.00 0.00 C ATOM 55 C GLU 18 38.912 34.780 52.294 1.00 0.00 C ATOM 56 O GLU 18 38.354 34.185 53.203 1.00 0.00 O ATOM 57 N LEU 19 38.500 35.974 51.853 1.00 0.00 N ATOM 58 CA LEU 19 37.434 36.698 52.548 1.00 0.00 C ATOM 59 C LEU 19 36.074 36.133 52.227 1.00 0.00 C ATOM 60 O LEU 19 35.270 35.884 53.136 1.00 0.00 O ATOM 61 N ALA 20 35.803 35.920 50.942 1.00 0.00 N ATOM 62 CA ALA 20 34.490 35.435 50.601 1.00 0.00 C ATOM 63 C ALA 20 34.322 33.933 50.751 1.00 0.00 C ATOM 64 O ALA 20 33.207 33.421 50.739 1.00 0.00 O ATOM 65 N ALA 21 35.451 33.246 50.931 1.00 0.00 N ATOM 66 CA ALA 21 35.497 31.848 51.368 1.00 0.00 C ATOM 67 C ALA 21 34.898 31.763 52.769 1.00 0.00 C ATOM 68 O ALA 21 34.006 30.946 53.042 1.00 0.00 O ATOM 69 N HIS 22 35.383 32.635 53.645 1.00 0.00 N ATOM 70 CA HIS 22 34.872 32.736 54.999 1.00 0.00 C ATOM 71 C HIS 22 33.481 33.377 55.025 1.00 0.00 C ATOM 72 O HIS 22 32.666 33.021 55.858 1.00 0.00 O ATOM 73 N THR 23 33.188 34.307 54.115 1.00 0.00 N ATOM 74 CA THR 23 31.885 35.003 54.196 1.00 0.00 C ATOM 75 C THR 23 30.761 34.752 53.171 1.00 0.00 C ATOM 76 O THR 23 29.585 34.929 53.514 1.00 0.00 O ATOM 77 N SER 24 31.113 34.324 51.957 1.00 0.00 N ATOM 78 CA SER 24 30.191 34.324 50.814 1.00 0.00 C ATOM 79 C SER 24 30.550 35.476 49.882 1.00 0.00 C ATOM 80 O SER 24 30.720 36.623 50.326 1.00 0.00 O ATOM 81 N TRP 25 30.714 35.189 48.600 1.00 0.00 N ATOM 82 CA TRP 25 30.785 36.233 47.590 1.00 0.00 C ATOM 83 C TRP 25 29.750 37.341 47.789 1.00 0.00 C ATOM 84 O TRP 25 30.087 38.502 47.698 1.00 0.00 O ATOM 85 N GLU 26 28.497 36.983 48.054 1.00 0.00 N ATOM 86 CA GLU 26 27.425 37.976 48.206 1.00 0.00 C ATOM 87 C GLU 26 27.573 39.009 49.317 1.00 0.00 C ATOM 88 O GLU 26 27.556 40.195 49.030 1.00 0.00 O ATOM 89 N ALA 27 27.690 38.589 50.573 1.00 0.00 N ATOM 90 CA ALA 27 27.812 39.573 51.653 1.00 0.00 C ATOM 91 C ALA 27 29.254 40.046 51.899 1.00 0.00 C ATOM 92 O ALA 27 29.641 40.344 53.030 1.00 0.00 O ATOM 93 N VAL 28 30.036 40.102 50.824 1.00 0.00 N ATOM 94 CA VAL 28 31.402 40.631 50.855 1.00 0.00 C ATOM 95 C VAL 28 31.614 41.863 49.928 1.00 0.00 C ATOM 96 O VAL 28 31.352 41.836 48.713 1.00 0.00 O ATOM 97 N ARG 29 32.059 42.947 50.543 1.00 0.00 N ATOM 98 CA ARG 29 32.052 44.212 49.915 1.00 0.00 C ATOM 99 C ARG 29 33.477 44.532 49.550 1.00 0.00 C ATOM 100 O ARG 29 34.433 44.131 50.248 1.00 0.00 O ATOM 101 N TYR 31 34.625 47.193 50.062 1.00 0.00 N ATOM 102 CA TYR 31 35.059 47.993 51.151 1.00 0.00 C ATOM 103 C TYR 31 35.701 47.098 52.229 1.00 0.00 C ATOM 104 O TYR 31 36.727 47.476 52.815 1.00 0.00 O ATOM 105 N ASP 32 35.161 45.891 52.458 1.00 0.00 N ATOM 106 CA ASP 32 35.728 45.038 53.530 1.00 0.00 C ATOM 107 C ASP 32 37.101 44.557 53.102 1.00 0.00 C ATOM 108 O ASP 32 38.061 44.518 53.900 1.00 0.00 O ATOM 109 N ILE 33 37.164 44.192 51.825 1.00 0.00 N ATOM 110 CA ILE 33 38.388 43.768 51.177 1.00 0.00 C ATOM 111 C ILE 33 39.449 44.883 51.311 1.00 0.00 C ATOM 112 O ILE 33 40.574 44.634 51.759 1.00 0.00 O ATOM 113 N ALA 34 39.092 46.119 50.958 1.00 0.00 N ATOM 114 CA ALA 34 40.016 47.261 51.105 1.00 0.00 C ATOM 115 C ALA 34 40.477 47.418 52.539 1.00 0.00 C ATOM 116 O ALA 34 41.679 47.486 52.795 1.00 0.00 O ATOM 117 N ALA 35 39.511 47.487 53.451 1.00 0.00 N ATOM 118 CA ALA 35 39.762 47.604 54.883 1.00 0.00 C ATOM 119 C ALA 35 40.723 46.544 55.415 1.00 0.00 C ATOM 120 O ALA 35 41.727 46.879 56.018 1.00 0.00 O ATOM 121 N ARG 36 40.398 45.277 55.178 1.00 0.00 N ATOM 122 CA ARG 36 41.207 44.154 55.635 1.00 0.00 C ATOM 123 C ARG 36 42.568 44.141 54.961 1.00 0.00 C ATOM 124 O ARG 36 43.513 43.561 55.476 1.00 0.00 O ATOM 125 N LEU 37 42.651 44.755 53.794 1.00 0.00 N ATOM 126 CA LEU 37 43.856 44.681 52.972 1.00 0.00 C ATOM 127 C LEU 37 44.894 45.772 53.301 1.00 0.00 C ATOM 128 O LEU 37 46.076 45.603 53.015 1.00 0.00 O ATOM 129 N ALA 38 44.442 46.880 53.897 1.00 0.00 N ATOM 130 CA ALA 38 45.321 47.982 54.331 1.00 0.00 C ATOM 131 C ALA 38 45.505 48.960 53.211 1.00 0.00 C ATOM 132 O ALA 38 46.589 49.404 52.934 1.00 0.00 O ATOM 133 N VAL 39 44.416 49.319 52.585 1.00 0.00 N ATOM 134 CA VAL 39 44.462 49.918 51.265 1.00 0.00 C ATOM 135 C VAL 39 43.173 50.707 51.112 1.00 0.00 C ATOM 136 O VAL 39 42.107 50.270 51.524 1.00 0.00 O ATOM 137 N SER 40 43.275 51.911 50.600 1.00 0.00 N ATOM 138 CA SER 40 42.094 52.719 50.443 1.00 0.00 C ATOM 139 C SER 40 41.116 52.030 49.476 1.00 0.00 C ATOM 140 O SER 40 41.490 51.256 48.549 1.00 0.00 O ATOM 141 N LEU 41 39.843 52.348 49.667 1.00 0.00 N ATOM 142 CA LEU 41 38.836 51.830 48.778 1.00 0.00 C ATOM 143 C LEU 41 39.192 52.162 47.330 1.00 0.00 C ATOM 144 O LEU 41 39.055 51.296 46.464 1.00 0.00 O ATOM 145 N ASP 42 39.640 53.396 47.073 1.00 0.00 N ATOM 146 CA ASP 42 40.017 53.824 45.733 1.00 0.00 C ATOM 147 C ASP 42 41.143 53.045 45.079 1.00 0.00 C ATOM 148 O ASP 42 41.058 52.687 43.924 1.00 0.00 O ATOM 149 N GLU 43 42.216 52.804 45.795 1.00 0.00 N ATOM 150 CA GLU 43 43.218 51.836 45.389 1.00 0.00 C ATOM 151 C GLU 43 42.596 50.458 45.052 1.00 0.00 C ATOM 152 O GLU 43 42.747 49.995 43.946 1.00 0.00 O ATOM 153 N ILE 44 41.823 49.851 45.959 1.00 0.00 N ATOM 154 CA ILE 44 41.192 48.549 45.677 1.00 0.00 C ATOM 155 C ILE 44 40.525 48.627 44.329 1.00 0.00 C ATOM 156 O ILE 44 40.757 47.769 43.432 1.00 0.00 O ATOM 157 N ARG 45 39.715 49.656 44.106 1.00 0.00 N ATOM 158 CA ARG 45 39.091 49.716 42.741 1.00 0.00 C ATOM 159 C ARG 45 40.092 49.933 41.629 1.00 0.00 C ATOM 160 O ARG 45 39.930 49.446 40.586 1.00 0.00 O ATOM 161 N LEU 46 41.175 50.625 41.871 1.00 0.00 N ATOM 162 CA LEU 46 42.184 50.695 40.827 1.00 0.00 C ATOM 163 C LEU 46 42.694 49.339 40.322 1.00 0.00 C ATOM 164 O LEU 46 43.011 49.194 39.145 1.00 0.00 O ATOM 165 N TYR 47 42.840 48.365 41.215 1.00 0.00 N ATOM 166 CA TYR 47 43.387 47.084 40.798 1.00 0.00 C ATOM 167 C TYR 47 42.286 46.206 40.317 1.00 0.00 C ATOM 168 O TYR 47 42.509 45.430 39.413 1.00 0.00 O ATOM 169 N PHE 48 41.084 46.347 40.874 1.00 0.00 N ATOM 170 CA PHE 48 39.955 45.556 40.390 1.00 0.00 C ATOM 171 C PHE 48 38.736 46.444 40.322 1.00 0.00 C ATOM 172 O PHE 48 38.286 46.886 41.356 1.00 0.00 O ATOM 173 N ARG 49 38.220 46.733 39.126 1.00 0.00 N ATOM 174 CA ARG 49 36.985 47.513 38.983 1.00 0.00 C ATOM 175 C ARG 49 35.787 46.702 39.477 1.00 0.00 C ATOM 176 O ARG 49 34.992 46.221 38.657 1.00 0.00 O ATOM 177 N GLU 50 35.679 46.522 40.804 1.00 0.00 N ATOM 178 CA GLU 50 34.584 45.753 41.412 1.00 0.00 C ATOM 179 C GLU 50 34.676 44.223 41.533 1.00 0.00 C ATOM 180 O GLU 50 35.592 43.584 41.039 1.00 0.00 O ATOM 181 N LYS 51 33.678 43.629 42.167 1.00 0.00 N ATOM 182 CA LYS 51 33.802 42.243 42.624 1.00 0.00 C ATOM 183 C LYS 51 34.034 41.163 41.526 1.00 0.00 C ATOM 184 O LYS 51 34.757 40.195 41.771 1.00 0.00 O ATOM 185 N ASP 52 33.441 41.305 40.347 1.00 0.00 N ATOM 186 CA ASP 52 33.594 40.265 39.330 1.00 0.00 C ATOM 187 C ASP 52 34.987 40.204 38.747 1.00 0.00 C ATOM 188 O ASP 52 35.454 39.135 38.378 1.00 0.00 O ATOM 189 N GLU 53 35.668 41.340 38.689 1.00 0.00 N ATOM 190 CA GLU 53 37.064 41.328 38.261 1.00 0.00 C ATOM 191 C GLU 53 38.012 40.592 39.203 1.00 0.00 C ATOM 192 O GLU 53 39.060 40.120 38.760 1.00 0.00 O ATOM 193 N LEU 54 37.674 40.530 40.496 1.00 0.00 N ATOM 194 CA LEU 54 38.387 39.619 41.389 1.00 0.00 C ATOM 195 C LEU 54 38.114 38.137 41.027 1.00 0.00 C ATOM 196 O LEU 54 39.016 37.293 41.074 1.00 0.00 O ATOM 197 N ILE 55 36.889 37.808 40.634 1.00 0.00 N ATOM 198 CA ILE 55 36.610 36.439 40.291 1.00 0.00 C ATOM 199 C ILE 55 37.392 36.080 39.068 1.00 0.00 C ATOM 200 O ILE 55 38.121 35.098 39.094 1.00 0.00 O ATOM 201 N ASP 56 37.280 36.874 38.003 1.00 0.00 N ATOM 202 CA ASP 56 38.213 36.715 36.870 1.00 0.00 C ATOM 203 C ASP 56 39.643 36.386 37.331 1.00 0.00 C ATOM 204 O ASP 56 40.199 35.349 36.932 1.00 0.00 O ATOM 205 N ALA 57 40.201 37.203 38.221 1.00 0.00 N ATOM 206 CA ALA 57 41.590 37.030 38.641 1.00 0.00 C ATOM 207 C ALA 57 41.806 35.798 39.490 1.00 0.00 C ATOM 208 O ALA 57 42.927 35.315 39.667 1.00 0.00 O ATOM 209 N TRP 58 40.712 35.302 40.029 1.00 0.00 N ATOM 210 CA TRP 58 40.706 34.055 40.754 1.00 0.00 C ATOM 211 C TRP 58 40.701 32.867 39.780 1.00 0.00 C ATOM 212 O TRP 58 41.520 31.935 39.941 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 208 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 27.70 84.0 100 96.2 104 ARMSMC SECONDARY STRUCTURE . . 17.22 91.5 71 95.9 74 ARMSMC SURFACE . . . . . . . . 30.65 81.6 76 97.4 78 ARMSMC BURIED . . . . . . . . 14.95 91.7 24 92.3 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 43 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 39 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 35 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 28 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.18 (Number of atoms: 52) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.18 52 98.1 53 CRMSCA CRN = ALL/NP . . . . . 0.0419 CRMSCA SECONDARY STRUCTURE . . 2.32 36 97.3 37 CRMSCA SURFACE . . . . . . . . 2.07 40 100.0 40 CRMSCA BURIED . . . . . . . . 2.51 12 92.3 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.97 208 78.5 265 CRMSMC SECONDARY STRUCTURE . . 2.06 144 77.8 185 CRMSMC SURFACE . . . . . . . . 1.91 160 80.0 200 CRMSMC BURIED . . . . . . . . 2.18 48 73.8 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 210 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 186 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 136 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 167 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 43 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.97 208 49.3 422 CRMSALL SECONDARY STRUCTURE . . 2.06 144 50.7 284 CRMSALL SURFACE . . . . . . . . 1.91 160 48.9 327 CRMSALL BURIED . . . . . . . . 2.18 48 50.5 95 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.763 1.000 0.500 52 98.1 53 ERRCA SECONDARY STRUCTURE . . 1.843 1.000 0.500 36 97.3 37 ERRCA SURFACE . . . . . . . . 1.677 1.000 0.500 40 100.0 40 ERRCA BURIED . . . . . . . . 2.047 1.000 0.500 12 92.3 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.642 1.000 0.500 208 78.5 265 ERRMC SECONDARY STRUCTURE . . 1.691 1.000 0.500 144 77.8 185 ERRMC SURFACE . . . . . . . . 1.588 1.000 0.500 160 80.0 200 ERRMC BURIED . . . . . . . . 1.823 1.000 0.500 48 73.8 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 210 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 186 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 136 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 167 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 43 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.642 1.000 0.500 208 49.3 422 ERRALL SECONDARY STRUCTURE . . 1.691 1.000 0.500 144 50.7 284 ERRALL SURFACE . . . . . . . . 1.588 1.000 0.500 160 48.9 327 ERRALL BURIED . . . . . . . . 1.823 1.000 0.500 48 50.5 95 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 16 40 40 52 52 52 53 DISTCA CA (P) 30.19 75.47 75.47 98.11 98.11 53 DISTCA CA (RMS) 0.78 1.15 1.15 2.18 2.18 DISTCA ALL (N) 70 157 171 207 208 208 422 DISTALL ALL (P) 16.59 37.20 40.52 49.05 49.29 422 DISTALL ALL (RMS) 0.78 1.13 1.32 1.94 1.97 DISTALL END of the results output