####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 53 ( 212), selected 53 , name T0596AL285_1-D1 # Molecule2: number of CA atoms 53 ( 422), selected 53 , name T0596-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0596AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 53 6 - 58 0.89 0.89 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 53 6 - 58 0.89 0.89 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 53 6 - 58 0.89 0.89 LCS_AVERAGE: 100.00 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 53 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 6 D 6 53 53 53 3 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT P 7 P 7 53 53 53 3 10 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT M 8 M 8 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 9 R 9 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 10 D 10 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 11 A 11 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 12 I 12 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT V 13 V 13 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 14 D 14 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT T 15 T 15 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 16 A 16 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT V 17 V 17 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 18 E 18 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 19 L 19 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 20 A 20 53 53 53 11 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 21 A 21 53 53 53 11 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT H 22 H 22 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT T 23 T 23 53 53 53 4 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT S 24 S 24 53 53 53 14 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT W 25 W 25 53 53 53 4 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 26 E 26 53 53 53 4 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 27 A 27 53 53 53 11 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT V 28 V 28 53 53 53 4 19 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 29 R 29 53 53 53 14 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 30 L 30 53 53 53 14 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Y 31 Y 31 53 53 53 14 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 32 D 32 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 33 I 33 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 34 A 34 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 35 A 35 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 36 R 36 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 37 L 37 53 53 53 14 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 38 A 38 53 53 53 11 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT V 39 V 39 53 53 53 11 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT S 40 S 40 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 41 L 41 53 53 53 4 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 42 D 42 53 53 53 4 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 43 E 43 53 53 53 4 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 44 I 44 53 53 53 14 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 45 R 45 53 53 53 5 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 46 L 46 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Y 47 Y 47 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT F 48 F 48 53 53 53 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 49 R 49 53 53 53 17 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 50 E 50 53 53 53 9 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 51 K 51 53 53 53 9 38 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 52 D 52 53 53 53 9 38 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 53 E 53 53 53 53 9 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 54 L 54 53 53 53 7 28 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 55 I 55 53 53 53 7 17 42 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 56 D 56 53 53 53 7 24 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 57 A 57 53 53 53 7 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT W 58 W 58 53 53 53 7 38 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 LCS_AVERAGE LCS_A: 100.00 ( 100.00 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 21 40 52 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 GDT PERCENT_AT 39.62 75.47 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.36 0.68 0.86 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 GDT RMS_ALL_AT 1.31 0.98 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 6 D 6 0.731 4 0.150 0.150 1.974 81.667 40.833 LGA P 7 P 7 1.460 3 0.206 0.206 1.460 83.690 47.823 LGA M 8 M 8 0.870 4 0.085 0.085 1.008 88.214 44.107 LGA R 9 R 9 0.844 7 0.027 0.027 0.895 90.476 32.900 LGA D 10 D 10 0.991 4 0.024 0.024 1.120 85.952 42.976 LGA A 11 A 11 0.827 1 0.043 0.043 0.870 90.476 72.381 LGA I 12 I 12 0.756 4 0.100 0.100 0.780 90.476 45.238 LGA V 13 V 13 0.915 3 0.057 0.057 1.037 88.214 50.408 LGA D 14 D 14 0.757 4 0.036 0.036 0.821 90.476 45.238 LGA T 15 T 15 0.812 3 0.043 0.043 0.889 90.476 51.701 LGA A 16 A 16 0.784 1 0.042 0.042 0.882 90.476 72.381 LGA V 17 V 17 0.996 3 0.031 0.031 0.996 90.476 51.701 LGA E 18 E 18 0.629 5 0.066 0.066 0.649 90.476 40.212 LGA L 19 L 19 0.807 4 0.035 0.035 1.146 88.214 44.107 LGA A 20 A 20 1.181 1 0.097 0.097 1.807 79.286 63.429 LGA A 21 A 21 1.207 1 0.025 0.025 1.270 81.429 65.143 LGA H 22 H 22 1.106 6 0.075 0.075 1.131 83.690 33.476 LGA T 23 T 23 0.964 3 0.263 0.263 2.029 81.786 46.735 LGA S 24 S 24 0.401 2 0.149 0.149 1.027 90.595 60.397 LGA W 25 W 25 0.954 10 0.086 0.086 0.965 90.476 25.850 LGA E 26 E 26 0.953 5 0.127 0.127 1.574 83.810 37.249 LGA A 27 A 27 1.030 1 0.020 0.020 1.325 83.690 66.952 LGA V 28 V 28 1.204 3 0.041 0.041 1.204 85.952 49.116 LGA R 29 R 29 0.596 7 0.092 0.092 0.752 90.476 32.900 LGA L 30 L 30 0.641 4 0.069 0.069 0.727 90.476 45.238 LGA Y 31 Y 31 0.702 8 0.036 0.036 0.706 90.476 30.159 LGA D 32 D 32 0.686 4 0.029 0.029 0.686 90.476 45.238 LGA I 33 I 33 0.666 4 0.035 0.035 0.712 90.476 45.238 LGA A 34 A 34 0.785 1 0.074 0.074 0.785 90.476 72.381 LGA A 35 A 35 0.562 1 0.080 0.080 0.593 95.238 76.190 LGA R 36 R 36 0.245 7 0.079 0.079 0.315 100.000 36.364 LGA L 37 L 37 0.578 4 0.103 0.103 0.615 92.857 46.429 LGA A 38 A 38 0.890 1 0.032 0.032 0.998 90.476 72.381 LGA V 39 V 39 1.074 3 0.045 0.045 1.074 90.595 51.769 LGA S 40 S 40 0.446 2 0.123 0.123 0.768 92.857 61.905 LGA L 41 L 41 1.012 4 0.080 0.080 1.012 88.214 44.107 LGA D 42 D 42 0.766 4 0.057 0.057 0.979 90.476 45.238 LGA E 43 E 43 0.600 5 0.051 0.051 0.703 95.238 42.328 LGA I 44 I 44 0.553 4 0.055 0.055 0.605 92.857 46.429 LGA R 45 R 45 0.832 7 0.111 0.111 0.832 90.476 32.900 LGA L 46 L 46 0.583 4 0.026 0.026 0.806 90.476 45.238 LGA Y 47 Y 47 0.503 8 0.043 0.043 0.605 95.238 31.746 LGA F 48 F 48 0.329 7 0.034 0.034 0.354 100.000 36.364 LGA R 49 R 49 0.260 7 0.063 0.063 0.299 100.000 36.364 LGA E 50 E 50 0.877 5 0.045 0.045 0.937 90.476 40.212 LGA K 51 K 51 1.148 5 0.092 0.092 1.166 81.429 36.190 LGA D 52 D 52 1.085 4 0.046 0.046 1.097 85.952 42.976 LGA E 53 E 53 0.661 5 0.020 0.020 0.791 90.476 40.212 LGA L 54 L 54 1.150 4 0.059 0.059 1.317 83.690 41.845 LGA I 55 I 55 1.734 4 0.098 0.098 1.734 72.857 36.429 LGA D 56 D 56 1.437 4 0.048 0.048 1.437 81.429 40.714 LGA A 57 A 57 0.728 1 0.045 0.045 0.869 90.476 72.381 LGA W 58 W 58 1.126 10 0.022 0.022 1.348 83.690 23.912 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 53 212 212 100.00 422 212 50.24 53 SUMMARY(RMSD_GDC): 0.889 0.896 0.896 88.845 46.833 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 53 53 4.0 53 0.89 93.868 97.923 5.360 LGA_LOCAL RMSD: 0.889 Number of atoms: 53 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 0.889 Number of assigned atoms: 53 Std_ASGN_ATOMS RMSD: 0.889 Standard rmsd on all 53 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.628209 * X + 0.600773 * Y + -0.494394 * Z + 23.393192 Y_new = -0.465168 * X + 0.219347 * Y + 0.857616 * Z + -2.886662 Z_new = 0.623676 * X + 0.768739 * Y + 0.141664 * Z + 4.064569 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.504221 -0.673437 1.388559 [DEG: -143.4813 -38.5851 79.5586 ] ZXZ: -2.618651 1.428654 0.681592 [DEG: -150.0376 81.8558 39.0524 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0596AL285_1-D1 REMARK 2: T0596-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0596AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 53 53 4.0 53 0.89 97.923 0.89 REMARK ---------------------------------------------------------- MOLECULE T0596AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3dcfA ATOM 1 N ASP 6 51.478 43.768 39.861 1.00 0.00 N ATOM 2 CA ASP 6 51.441 42.443 40.556 1.00 0.00 C ATOM 3 C ASP 6 51.901 42.436 42.019 1.00 0.00 C ATOM 4 O ASP 6 51.700 41.424 42.690 1.00 0.00 O ATOM 5 N PRO 7 52.530 43.513 42.502 1.00 0.00 N ATOM 6 CA PRO 7 52.931 43.618 43.939 1.00 0.00 C ATOM 7 C PRO 7 51.711 43.594 44.912 1.00 0.00 C ATOM 8 O PRO 7 51.490 42.590 45.604 1.00 0.00 O ATOM 9 N MET 8 50.925 44.675 44.927 1.00 0.00 N ATOM 10 CA MET 8 49.719 44.818 45.764 1.00 0.00 C ATOM 11 C MET 8 48.523 44.065 45.146 1.00 0.00 C ATOM 12 O MET 8 47.639 43.615 45.876 1.00 0.00 O ATOM 13 N ARG 9 48.506 43.952 43.809 1.00 0.00 N ATOM 14 CA ARG 9 47.457 43.248 43.047 1.00 0.00 C ATOM 15 C ARG 9 47.322 41.790 43.502 1.00 0.00 C ATOM 16 O ARG 9 46.212 41.349 43.803 1.00 0.00 O ATOM 17 N ASP 10 48.454 41.067 43.555 1.00 0.00 N ATOM 18 CA ASP 10 48.518 39.673 44.074 1.00 0.00 C ATOM 19 C ASP 10 48.059 39.604 45.539 1.00 0.00 C ATOM 20 O ASP 10 47.390 38.646 45.935 1.00 0.00 O ATOM 21 N ALA 11 48.438 40.617 46.322 1.00 0.00 N ATOM 22 CA ALA 11 48.010 40.744 47.717 1.00 0.00 C ATOM 23 C ALA 11 46.482 40.937 47.754 1.00 0.00 C ATOM 24 O ALA 11 45.811 40.336 48.596 1.00 0.00 O ATOM 25 N ILE 12 45.952 41.746 46.824 1.00 0.00 N ATOM 26 CA ILE 12 44.506 41.977 46.692 1.00 0.00 C ATOM 27 C ILE 12 43.750 40.708 46.252 1.00 0.00 C ATOM 28 O ILE 12 42.669 40.423 46.790 1.00 0.00 O ATOM 29 N VAL 13 44.301 39.958 45.295 1.00 0.00 N ATOM 30 CA VAL 13 43.670 38.693 44.848 1.00 0.00 C ATOM 31 C VAL 13 43.640 37.649 45.990 1.00 0.00 C ATOM 32 O VAL 13 42.616 36.998 46.202 1.00 0.00 O ATOM 33 N ASP 14 44.753 37.522 46.714 1.00 0.00 N ATOM 34 CA ASP 14 44.880 36.579 47.840 1.00 0.00 C ATOM 35 C ASP 14 43.928 36.935 48.990 1.00 0.00 C ATOM 36 O ASP 14 43.212 36.062 49.509 1.00 0.00 O ATOM 37 N THR 15 43.918 38.217 49.369 1.00 0.00 N ATOM 38 CA THR 15 43.023 38.721 50.419 1.00 0.00 C ATOM 39 C THR 15 41.536 38.536 50.024 1.00 0.00 C ATOM 40 O THR 15 40.731 38.117 50.859 1.00 0.00 O ATOM 41 N ALA 16 41.198 38.823 48.759 1.00 0.00 N ATOM 42 CA ALA 16 39.832 38.639 48.229 1.00 0.00 C ATOM 43 C ALA 16 39.410 37.154 48.231 1.00 0.00 C ATOM 44 O ALA 16 38.264 36.850 48.567 1.00 0.00 O ATOM 45 N VAL 17 40.340 36.258 47.864 1.00 0.00 N ATOM 46 CA VAL 17 40.127 34.787 47.871 1.00 0.00 C ATOM 47 C VAL 17 39.831 34.262 49.289 1.00 0.00 C ATOM 48 O VAL 17 38.877 33.496 49.478 1.00 0.00 O ATOM 49 N GLU 18 40.667 34.661 50.255 1.00 0.00 N ATOM 50 CA GLU 18 40.480 34.319 51.681 1.00 0.00 C ATOM 51 C GLU 18 39.149 34.849 52.212 1.00 0.00 C ATOM 52 O GLU 18 38.436 34.139 52.920 1.00 0.00 O ATOM 53 N LEU 19 38.817 36.081 51.833 1.00 0.00 N ATOM 54 CA LEU 19 37.595 36.755 52.280 1.00 0.00 C ATOM 55 C LEU 19 36.327 36.151 51.635 1.00 0.00 C ATOM 56 O LEU 19 35.304 36.044 52.310 1.00 0.00 O ATOM 57 N ALA 20 36.381 35.757 50.351 1.00 0.00 N ATOM 58 CA ALA 20 35.231 35.061 49.705 1.00 0.00 C ATOM 59 C ALA 20 35.003 33.648 50.280 1.00 0.00 C ATOM 60 O ALA 20 33.866 33.158 50.281 1.00 0.00 O ATOM 61 N ALA 21 36.075 33.003 50.748 1.00 0.00 N ATOM 62 CA ALA 21 35.980 31.687 51.383 1.00 0.00 C ATOM 63 C ALA 21 35.284 31.795 52.748 1.00 0.00 C ATOM 64 O ALA 21 34.192 31.255 52.929 1.00 0.00 O ATOM 65 N HIS 22 35.900 32.540 53.671 1.00 0.00 N ATOM 66 CA HIS 22 35.404 32.693 55.053 1.00 0.00 C ATOM 67 C HIS 22 34.030 33.354 55.180 1.00 0.00 C ATOM 68 O HIS 22 33.212 32.914 55.980 1.00 0.00 O ATOM 69 N THR 23 33.790 34.397 54.395 1.00 0.00 N ATOM 70 CA THR 23 32.552 35.188 54.477 1.00 0.00 C ATOM 71 C THR 23 31.489 34.822 53.443 1.00 0.00 C ATOM 72 O THR 23 30.300 34.845 53.769 1.00 0.00 O ATOM 73 N SER 24 31.911 34.501 52.216 1.00 0.00 N ATOM 74 CA SER 24 30.999 34.224 51.087 1.00 0.00 C ATOM 75 C SER 24 31.031 35.386 50.096 1.00 0.00 C ATOM 76 O SER 24 31.154 36.554 50.498 1.00 0.00 O ATOM 77 N TRP 25 30.884 35.074 48.808 1.00 0.00 N ATOM 78 CA TRP 25 30.968 36.081 47.733 1.00 0.00 C ATOM 79 C TRP 25 29.926 37.210 47.821 1.00 0.00 C ATOM 80 O TRP 25 30.286 38.390 47.704 1.00 0.00 O ATOM 81 N GLU 26 28.661 36.843 48.032 1.00 0.00 N ATOM 82 CA GLU 26 27.556 37.827 48.068 1.00 0.00 C ATOM 83 C GLU 26 27.523 38.719 49.318 1.00 0.00 C ATOM 84 O GLU 26 26.920 39.795 49.274 1.00 0.00 O ATOM 85 N ALA 27 28.147 38.268 50.411 1.00 0.00 N ATOM 86 CA ALA 27 28.264 39.045 51.658 1.00 0.00 C ATOM 87 C ALA 27 29.503 39.971 51.685 1.00 0.00 C ATOM 88 O ALA 27 29.594 40.855 52.551 1.00 0.00 O ATOM 89 N VAL 28 30.439 39.762 50.748 1.00 0.00 N ATOM 90 CA VAL 28 31.702 40.529 50.648 1.00 0.00 C ATOM 91 C VAL 28 31.637 41.613 49.570 1.00 0.00 C ATOM 92 O VAL 28 31.263 41.316 48.448 1.00 0.00 O ATOM 93 N ARG 29 32.024 42.846 49.901 1.00 0.00 N ATOM 94 CA ARG 29 32.063 43.973 48.937 1.00 0.00 C ATOM 95 C ARG 29 33.508 44.453 48.695 1.00 0.00 C ATOM 96 O ARG 29 34.455 43.919 49.306 1.00 0.00 O ATOM 97 N LEU 30 33.685 45.423 47.787 1.00 0.00 N ATOM 98 CA LEU 30 35.023 46.045 47.556 1.00 0.00 C ATOM 99 C LEU 30 35.517 46.853 48.766 1.00 0.00 C ATOM 100 O LEU 30 36.729 46.991 48.956 1.00 0.00 O ATOM 101 N TYR 31 34.580 47.380 49.556 1.00 0.00 N ATOM 102 CA TYR 31 34.870 48.098 50.821 1.00 0.00 C ATOM 103 C TYR 31 35.506 47.176 51.871 1.00 0.00 C ATOM 104 O TYR 31 36.398 47.601 52.601 1.00 0.00 O ATOM 105 N ASP 32 35.012 45.933 51.950 1.00 0.00 N ATOM 106 CA ASP 32 35.543 44.898 52.858 1.00 0.00 C ATOM 107 C ASP 32 36.981 44.489 52.498 1.00 0.00 C ATOM 108 O ASP 32 37.822 44.356 53.395 1.00 0.00 O ATOM 109 N ILE 33 37.245 44.297 51.196 1.00 0.00 N ATOM 110 CA ILE 33 38.586 43.915 50.675 1.00 0.00 C ATOM 111 C ILE 33 39.590 45.033 50.966 1.00 0.00 C ATOM 112 O ILE 33 40.671 44.760 51.480 1.00 0.00 O ATOM 113 N ALA 34 39.201 46.272 50.643 1.00 0.00 N ATOM 114 CA ALA 34 39.985 47.493 50.933 1.00 0.00 C ATOM 115 C ALA 34 40.305 47.645 52.426 1.00 0.00 C ATOM 116 O ALA 34 41.403 48.074 52.777 1.00 0.00 O ATOM 117 N ALA 35 39.338 47.305 53.282 1.00 0.00 N ATOM 118 CA ALA 35 39.505 47.357 54.739 1.00 0.00 C ATOM 119 C ALA 35 40.601 46.389 55.242 1.00 0.00 C ATOM 120 O ALA 35 41.527 46.818 55.937 1.00 0.00 O ATOM 121 N ARG 36 40.509 45.114 54.844 1.00 0.00 N ATOM 122 CA ARG 36 41.462 44.050 55.272 1.00 0.00 C ATOM 123 C ARG 36 42.943 44.307 54.932 1.00 0.00 C ATOM 124 O ARG 36 43.820 44.085 55.771 1.00 0.00 O ATOM 125 N LEU 37 43.222 44.736 53.703 1.00 0.00 N ATOM 126 CA LEU 37 44.609 45.088 53.291 1.00 0.00 C ATOM 127 C LEU 37 45.063 46.473 53.817 1.00 0.00 C ATOM 128 O LEU 37 46.256 46.785 53.796 1.00 0.00 O ATOM 129 N ALA 38 44.110 47.297 54.259 1.00 0.00 N ATOM 130 CA ALA 38 44.394 48.622 54.785 1.00 0.00 C ATOM 131 C ALA 38 44.514 49.696 53.714 1.00 0.00 C ATOM 132 O ALA 38 45.396 50.548 53.801 1.00 0.00 O ATOM 133 N VAL 39 43.631 49.646 52.709 1.00 0.00 N ATOM 134 CA VAL 39 43.583 50.603 51.581 1.00 0.00 C ATOM 135 C VAL 39 42.297 51.410 51.624 1.00 0.00 C ATOM 136 O VAL 39 41.316 51.002 52.249 1.00 0.00 O ATOM 137 N SER 40 42.317 52.551 50.945 1.00 0.00 N ATOM 138 CA SER 40 41.127 53.398 50.807 1.00 0.00 C ATOM 139 C SER 40 40.244 52.816 49.675 1.00 0.00 C ATOM 140 O SER 40 40.686 51.938 48.918 1.00 0.00 O ATOM 141 N LEU 41 39.009 53.312 49.561 1.00 0.00 N ATOM 142 CA LEU 41 38.065 52.889 48.498 1.00 0.00 C ATOM 143 C LEU 41 38.625 53.371 47.127 1.00 0.00 C ATOM 144 O LEU 41 38.662 52.570 46.192 1.00 0.00 O ATOM 145 N ASP 42 39.028 54.677 46.997 1.00 0.00 N ATOM 146 CA ASP 42 39.739 55.152 45.779 1.00 0.00 C ATOM 147 C ASP 42 40.997 54.358 45.385 1.00 0.00 C ATOM 148 O ASP 42 41.243 54.163 44.191 1.00 0.00 O ATOM 149 N GLU 43 41.769 53.900 46.368 1.00 0.00 N ATOM 150 CA GLU 43 42.990 53.123 46.096 1.00 0.00 C ATOM 151 C GLU 43 42.718 51.742 45.432 1.00 0.00 C ATOM 152 O GLU 43 43.495 51.332 44.561 1.00 0.00 O ATOM 153 N ILE 44 41.633 51.056 45.820 1.00 0.00 N ATOM 154 CA ILE 44 41.232 49.752 45.213 1.00 0.00 C ATOM 155 C ILE 44 40.697 49.902 43.768 1.00 0.00 C ATOM 156 O ILE 44 40.915 48.994 42.950 1.00 0.00 O ATOM 157 N ARG 45 40.009 51.016 43.460 1.00 0.00 N ATOM 158 CA ARG 45 39.497 51.298 42.087 1.00 0.00 C ATOM 159 C ARG 45 40.573 51.250 40.998 1.00 0.00 C ATOM 160 O ARG 45 40.295 50.779 39.893 1.00 0.00 O ATOM 161 N LEU 46 41.771 51.753 41.313 1.00 0.00 N ATOM 162 CA LEU 46 42.936 51.713 40.409 1.00 0.00 C ATOM 163 C LEU 46 43.195 50.297 39.888 1.00 0.00 C ATOM 164 O LEU 46 43.400 50.105 38.687 1.00 0.00 O ATOM 165 N TYR 47 43.150 49.319 40.794 1.00 0.00 N ATOM 166 CA TYR 47 43.352 47.897 40.466 1.00 0.00 C ATOM 167 C TYR 47 42.037 47.194 40.048 1.00 0.00 C ATOM 168 O TYR 47 42.010 46.506 39.021 1.00 0.00 O ATOM 169 N PHE 48 40.959 47.378 40.822 1.00 0.00 N ATOM 170 CA PHE 48 39.654 46.719 40.548 1.00 0.00 C ATOM 171 C PHE 48 38.455 47.637 40.778 1.00 0.00 C ATOM 172 O PHE 48 38.313 48.179 41.876 1.00 0.00 O ATOM 173 N ARG 49 37.587 47.764 39.764 1.00 0.00 N ATOM 174 CA ARG 49 36.374 48.625 39.820 1.00 0.00 C ATOM 175 C ARG 49 35.066 47.946 40.246 1.00 0.00 C ATOM 176 O ARG 49 34.048 48.626 40.434 1.00 0.00 O ATOM 177 N GLU 50 35.100 46.621 40.389 1.00 0.00 N ATOM 178 CA GLU 50 33.982 45.847 40.919 1.00 0.00 C ATOM 179 C GLU 50 34.491 44.527 41.522 1.00 0.00 C ATOM 180 O GLU 50 35.623 44.104 41.264 1.00 0.00 O ATOM 181 N LYS 51 33.650 43.913 42.352 1.00 0.00 N ATOM 182 CA LYS 51 33.920 42.581 42.931 1.00 0.00 C ATOM 183 C LYS 51 33.943 41.464 41.849 1.00 0.00 C ATOM 184 O LYS 51 34.604 40.433 42.026 1.00 0.00 O ATOM 185 N ASP 52 33.219 41.689 40.745 1.00 0.00 N ATOM 186 CA ASP 52 33.184 40.776 39.593 1.00 0.00 C ATOM 187 C ASP 52 34.544 40.774 38.890 1.00 0.00 C ATOM 188 O ASP 52 35.032 39.711 38.498 1.00 0.00 O ATOM 189 N GLU 53 35.139 41.966 38.733 1.00 0.00 N ATOM 190 CA GLU 53 36.495 42.110 38.173 1.00 0.00 C ATOM 191 C GLU 53 37.541 41.425 39.071 1.00 0.00 C ATOM 192 O GLU 53 38.542 40.941 38.552 1.00 0.00 O ATOM 193 N LEU 54 37.317 41.404 40.397 1.00 0.00 N ATOM 194 CA LEU 54 38.194 40.681 41.339 1.00 0.00 C ATOM 195 C LEU 54 38.011 39.172 41.145 1.00 0.00 C ATOM 196 O LEU 54 38.995 38.429 41.132 1.00 0.00 O ATOM 197 N ILE 55 36.759 38.735 40.974 1.00 0.00 N ATOM 198 CA ILE 55 36.468 37.321 40.739 1.00 0.00 C ATOM 199 C ILE 55 37.080 36.787 39.421 1.00 0.00 C ATOM 200 O ILE 55 37.564 35.641 39.393 1.00 0.00 O ATOM 201 N ASP 56 37.076 37.607 38.361 1.00 0.00 N ATOM 202 CA ASP 56 37.733 37.248 37.088 1.00 0.00 C ATOM 203 C ASP 56 39.237 37.021 37.311 1.00 0.00 C ATOM 204 O ASP 56 39.783 35.995 36.894 1.00 0.00 O ATOM 205 N ALA 57 39.881 37.989 37.968 1.00 0.00 N ATOM 206 CA ALA 57 41.300 37.929 38.314 1.00 0.00 C ATOM 207 C ALA 57 41.677 36.643 39.072 1.00 0.00 C ATOM 208 O ALA 57 42.711 36.047 38.769 1.00 0.00 O ATOM 209 N TRP 58 40.838 36.231 40.033 1.00 0.00 N ATOM 210 CA TRP 58 41.039 34.975 40.802 1.00 0.00 C ATOM 211 C TRP 58 40.955 33.740 39.891 1.00 0.00 C ATOM 212 O TRP 58 41.805 32.840 39.985 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 212 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 16.14 94.2 104 100.0 104 ARMSMC SECONDARY STRUCTURE . . 10.59 98.6 74 100.0 74 ARMSMC SURFACE . . . . . . . . 17.73 92.3 78 100.0 78 ARMSMC BURIED . . . . . . . . 9.92 100.0 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 43 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 39 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 35 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 28 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 0.89 (Number of atoms: 53) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 0.89 53 100.0 53 CRMSCA CRN = ALL/NP . . . . . 0.0168 CRMSCA SECONDARY STRUCTURE . . 0.91 37 100.0 37 CRMSCA SURFACE . . . . . . . . 0.90 40 100.0 40 CRMSCA BURIED . . . . . . . . 0.85 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 0.90 212 80.0 265 CRMSMC SECONDARY STRUCTURE . . 0.89 148 80.0 185 CRMSMC SURFACE . . . . . . . . 0.91 160 80.0 200 CRMSMC BURIED . . . . . . . . 0.86 52 80.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 210 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 186 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 136 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 167 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 43 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 0.90 212 50.2 422 CRMSALL SECONDARY STRUCTURE . . 0.89 148 52.1 284 CRMSALL SURFACE . . . . . . . . 0.91 160 48.9 327 CRMSALL BURIED . . . . . . . . 0.86 52 54.7 95 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.838 1.000 0.500 53 100.0 53 ERRCA SECONDARY STRUCTURE . . 0.865 1.000 0.500 37 100.0 37 ERRCA SURFACE . . . . . . . . 0.846 1.000 0.500 40 100.0 40 ERRCA BURIED . . . . . . . . 0.814 1.000 0.500 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.837 1.000 0.500 212 80.0 265 ERRMC SECONDARY STRUCTURE . . 0.840 1.000 0.500 148 80.0 185 ERRMC SURFACE . . . . . . . . 0.844 1.000 0.500 160 80.0 200 ERRMC BURIED . . . . . . . . 0.813 1.000 0.500 52 80.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 210 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 186 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 136 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 167 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 43 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.837 1.000 0.500 212 50.2 422 ERRALL SECONDARY STRUCTURE . . 0.840 1.000 0.500 148 52.1 284 ERRALL SURFACE . . . . . . . . 0.844 1.000 0.500 160 48.9 327 ERRALL BURIED . . . . . . . . 0.813 1.000 0.500 52 54.7 95 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 39 53 53 53 53 53 53 DISTCA CA (P) 73.58 100.00 100.00 100.00 100.00 53 DISTCA CA (RMS) 0.73 0.89 0.89 0.89 0.89 DISTCA ALL (N) 159 211 212 212 212 212 422 DISTALL ALL (P) 37.68 50.00 50.24 50.24 50.24 422 DISTALL ALL (RMS) 0.72 0.89 0.90 0.90 0.90 DISTALL END of the results output