####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 99 ( 396), selected 99 , name T0592AL285_1-D1 # Molecule2: number of CA atoms 137 ( 1085), selected 99 , name T0592-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0592AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 99 22 - 122 1.65 1.65 LCS_AVERAGE: 72.26 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 99 22 - 122 1.65 1.65 LCS_AVERAGE: 72.26 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 37 84 - 120 0.92 1.76 LONGEST_CONTINUOUS_SEGMENT: 37 85 - 121 0.95 1.70 LCS_AVERAGE: 19.88 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 99 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 22 D 22 8 99 99 29 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 23 L 23 8 99 99 29 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 24 S 24 8 99 99 29 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 25 I 25 8 99 99 29 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 26 D 26 8 99 99 29 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 27 I 27 8 99 99 27 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 28 K 28 8 99 99 27 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 29 K 29 8 99 99 8 64 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 30 G 30 8 99 99 3 15 40 68 86 92 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT Y 31 Y 31 32 99 99 3 9 44 83 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 32 E 32 32 99 99 3 35 74 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 33 G 33 32 99 99 3 30 62 81 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 34 I 34 32 99 99 20 51 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 35 I 35 32 99 99 27 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 36 V 36 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 37 V 37 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 38 D 38 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 39 V 39 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT R 40 R 40 32 99 99 28 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 41 D 41 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 42 A 42 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 43 E 43 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 44 A 44 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT Y 45 Y 45 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 46 K 46 32 99 99 25 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 47 E 47 32 99 99 25 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT C 48 C 48 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT H 49 H 49 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 50 I 50 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT P 51 P 51 32 99 99 28 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 52 T 52 32 99 99 15 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 53 A 53 32 99 99 29 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 54 I 54 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 55 S 55 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 56 I 56 32 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT P 57 P 57 32 99 99 25 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 58 G 58 32 99 99 23 62 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 59 N 59 32 99 99 16 44 76 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 60 K 60 32 99 99 4 51 76 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 61 I 61 32 99 99 3 32 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 62 N 62 32 99 99 6 8 47 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 63 E 63 32 99 99 6 12 53 76 88 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 64 D 64 6 99 99 6 6 6 12 24 61 93 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 65 T 65 6 99 99 6 6 6 7 27 52 94 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 66 T 66 6 99 99 6 14 58 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 67 K 67 10 99 99 25 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT R 68 R 68 10 99 99 3 9 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 69 L 69 10 99 99 27 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 70 S 70 10 99 99 6 60 77 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 71 K 71 10 99 99 3 51 76 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 72 E 72 10 99 99 3 22 70 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 73 K 73 10 99 99 5 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 74 V 74 10 99 99 11 58 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 75 I 75 10 99 99 11 55 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 76 I 76 10 99 99 27 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 77 T 77 10 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT Y 78 Y 78 8 99 99 27 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT C 79 C 79 8 99 99 6 43 76 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT W 80 W 80 8 99 99 6 23 50 78 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 81 G 81 8 99 99 6 8 33 44 78 88 94 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT C 84 C 84 37 99 99 3 11 36 79 87 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 85 N 85 37 99 99 20 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 86 G 86 37 99 99 9 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 87 A 87 37 99 99 9 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 88 T 88 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 89 K 89 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 90 A 90 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 91 A 91 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 92 A 92 37 99 99 29 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 93 K 93 37 99 99 29 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT F 94 F 94 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 95 A 95 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT Q 96 Q 96 37 99 99 21 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 97 L 97 37 99 99 27 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 98 G 98 37 99 99 29 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT F 99 F 99 37 99 99 29 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT R 100 R 100 37 99 99 6 30 65 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 101 V 101 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 102 K 102 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 103 E 103 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 104 L 104 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 105 I 105 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 106 G 106 37 99 99 27 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 107 G 107 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 108 I 108 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 109 E 109 37 99 99 27 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT Y 110 Y 110 37 99 99 8 63 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT W 111 W 111 37 99 99 22 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT R 112 R 112 37 99 99 20 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 113 K 113 37 99 99 8 43 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 114 E 114 37 99 99 8 59 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 115 N 115 37 99 99 9 57 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 116 G 116 37 99 99 11 62 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 117 E 117 37 99 99 21 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 118 V 118 37 99 99 24 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 119 E 119 37 99 99 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 120 G 120 37 99 99 29 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 121 T 121 37 99 99 3 11 58 79 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 122 L 122 3 99 99 3 3 4 4 9 11 75 81 91 97 99 99 99 99 99 99 99 99 99 99 LCS_AVERAGE LCS_A: 54.80 ( 19.88 72.26 72.26 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 30 65 78 84 90 93 95 97 98 98 99 99 99 99 99 99 99 99 99 99 GDT PERCENT_AT 21.90 47.45 56.93 61.31 65.69 67.88 69.34 70.80 71.53 71.53 72.26 72.26 72.26 72.26 72.26 72.26 72.26 72.26 72.26 72.26 GDT RMS_LOCAL 0.35 0.60 0.80 0.91 1.10 1.20 1.30 1.44 1.50 1.50 1.65 1.65 1.65 1.65 1.65 1.65 1.65 1.65 1.65 1.65 GDT RMS_ALL_AT 1.71 1.69 1.69 1.68 1.66 1.66 1.66 1.66 1.66 1.66 1.65 1.65 1.65 1.65 1.65 1.65 1.65 1.65 1.65 1.65 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 22 D 22 0.391 4 0.077 0.077 0.619 97.619 48.810 LGA L 23 L 23 0.519 4 0.017 0.017 0.519 97.619 48.810 LGA S 24 S 24 0.369 2 0.036 0.036 0.387 100.000 66.667 LGA I 25 I 25 0.274 4 0.043 0.043 0.395 100.000 50.000 LGA D 26 D 26 0.404 4 0.031 0.031 0.615 95.238 47.619 LGA I 27 I 27 0.620 4 0.082 0.082 0.620 90.476 45.238 LGA K 28 K 28 0.507 5 0.000 0.000 0.772 90.476 40.212 LGA K 29 K 29 1.107 5 0.073 0.073 2.293 75.357 33.492 LGA G 30 G 30 4.085 0 0.524 0.524 4.085 54.048 54.048 LGA Y 31 Y 31 2.424 8 0.070 0.070 2.809 64.881 21.627 LGA E 32 E 32 2.066 5 0.187 0.187 2.911 64.881 28.836 LGA G 33 G 33 2.688 0 0.285 0.285 2.688 62.857 62.857 LGA I 34 I 34 1.510 4 0.074 0.074 1.933 77.143 38.571 LGA I 35 I 35 1.044 4 0.191 0.191 1.400 83.690 41.845 LGA V 36 V 36 0.545 3 0.083 0.083 0.751 95.238 54.422 LGA V 37 V 37 0.293 3 0.020 0.020 0.388 100.000 57.143 LGA D 38 D 38 0.364 4 0.012 0.012 0.392 100.000 50.000 LGA V 39 V 39 0.516 3 0.104 0.104 0.516 97.619 55.782 LGA R 40 R 40 0.672 7 0.009 0.009 0.743 90.476 32.900 LGA D 41 D 41 0.598 4 0.045 0.045 0.604 92.857 46.429 LGA A 42 A 42 0.676 1 0.024 0.024 0.733 90.476 72.381 LGA E 43 E 43 0.643 5 0.045 0.045 0.705 90.476 40.212 LGA A 44 A 44 0.791 1 0.008 0.008 0.808 90.476 72.381 LGA Y 45 Y 45 0.666 8 0.032 0.032 0.841 90.476 30.159 LGA K 46 K 46 0.985 5 0.050 0.050 1.182 85.952 38.201 LGA E 47 E 47 1.153 5 0.140 0.140 1.707 79.286 35.238 LGA C 48 C 48 0.524 2 0.030 0.030 0.581 90.476 60.317 LGA H 49 H 49 0.534 6 0.042 0.042 0.590 90.476 36.190 LGA I 50 I 50 0.681 4 0.050 0.050 0.976 90.476 45.238 LGA P 51 P 51 1.176 3 0.079 0.079 1.176 83.690 47.823 LGA T 52 T 52 1.406 3 0.161 0.161 1.703 79.286 45.306 LGA A 53 A 53 0.884 1 0.049 0.049 1.037 90.595 72.476 LGA I 54 I 54 0.440 4 0.027 0.027 0.649 95.238 47.619 LGA S 55 S 55 0.533 2 0.046 0.046 0.533 97.619 65.079 LGA I 56 I 56 0.385 4 0.047 0.047 0.411 100.000 50.000 LGA P 57 P 57 0.775 3 0.036 0.036 1.099 88.214 50.408 LGA G 58 G 58 1.181 0 0.081 0.081 1.298 81.429 81.429 LGA N 59 N 59 1.850 4 0.077 0.077 1.850 77.143 38.571 LGA K 60 K 60 1.509 5 0.026 0.026 1.509 77.143 34.286 LGA I 61 I 61 1.594 4 0.577 0.577 4.649 62.619 31.310 LGA N 62 N 62 2.225 4 0.524 0.524 2.225 77.381 38.690 LGA E 63 E 63 2.925 5 0.166 0.166 2.925 60.952 27.090 LGA D 64 D 64 4.407 4 0.025 0.025 4.407 41.786 20.893 LGA T 65 T 65 4.417 3 0.181 0.181 4.417 41.905 23.946 LGA T 66 T 66 2.660 3 0.134 0.134 2.660 62.976 35.986 LGA K 67 K 67 0.984 5 0.204 0.204 2.884 82.262 36.561 LGA R 68 R 68 1.521 7 0.182 0.182 1.521 83.810 30.476 LGA L 69 L 69 0.577 4 0.033 0.033 0.927 90.476 45.238 LGA S 70 S 70 1.480 2 0.129 0.129 1.480 81.429 54.286 LGA K 71 K 71 1.724 5 0.056 0.056 2.327 68.810 30.582 LGA E 72 E 72 2.255 5 0.030 0.030 2.255 68.810 30.582 LGA K 73 K 73 1.112 5 0.188 0.188 1.589 81.548 36.243 LGA V 74 V 74 1.425 3 0.049 0.049 1.425 83.690 47.823 LGA I 75 I 75 1.395 4 0.012 0.012 1.511 79.286 39.643 LGA I 76 I 76 0.819 4 0.083 0.083 1.037 90.595 45.298 LGA T 77 T 77 0.416 3 0.014 0.014 0.634 97.619 55.782 LGA Y 78 Y 78 0.623 8 0.025 0.025 0.870 92.857 30.952 LGA C 79 C 79 1.647 2 0.029 0.029 1.973 75.000 50.000 LGA W 80 W 80 2.906 10 0.163 0.163 4.186 50.595 14.456 LGA G 81 G 81 4.347 0 0.100 0.100 4.347 40.238 40.238 LGA C 84 C 84 3.175 2 0.614 0.614 3.175 59.167 39.444 LGA N 85 N 85 0.889 4 0.225 0.225 1.295 88.214 44.107 LGA G 86 G 86 0.984 0 0.089 0.089 0.984 90.476 90.476 LGA A 87 A 87 0.984 1 0.066 0.066 1.023 88.214 70.571 LGA T 88 T 88 0.369 3 0.052 0.052 0.622 97.619 55.782 LGA K 89 K 89 0.124 5 0.012 0.012 0.227 100.000 44.444 LGA A 90 A 90 0.333 1 0.021 0.021 0.376 100.000 80.000 LGA A 91 A 91 0.506 1 0.035 0.035 0.595 92.857 74.286 LGA A 92 A 92 0.548 1 0.034 0.034 0.549 92.857 74.286 LGA K 93 K 93 0.565 5 0.047 0.047 0.587 92.857 41.270 LGA F 94 F 94 0.271 7 0.025 0.025 0.386 100.000 36.364 LGA A 95 A 95 0.252 1 0.059 0.059 0.265 100.000 80.000 LGA Q 96 Q 96 0.944 5 0.067 0.067 1.181 88.214 39.206 LGA L 97 L 97 1.010 4 0.000 0.000 1.051 85.952 42.976 LGA G 98 G 98 0.562 0 0.050 0.050 0.626 90.476 90.476 LGA F 99 F 99 0.417 7 0.082 0.082 0.780 95.238 34.632 LGA R 100 R 100 2.288 7 0.307 0.307 2.288 66.786 24.286 LGA V 101 V 101 0.736 3 0.057 0.057 1.114 88.214 50.408 LGA K 102 K 102 0.539 5 0.041 0.041 0.629 90.476 40.212 LGA E 103 E 103 0.548 5 0.078 0.078 1.198 88.214 39.206 LGA L 104 L 104 0.654 4 0.089 0.089 0.872 90.476 45.238 LGA I 105 I 105 0.327 4 0.028 0.028 0.681 97.619 48.810 LGA G 106 G 106 0.690 0 0.058 0.058 0.690 92.857 92.857 LGA G 107 G 107 0.264 0 0.038 0.038 0.282 100.000 100.000 LGA I 108 I 108 0.234 4 0.148 0.148 0.849 97.619 48.810 LGA E 109 E 109 0.753 5 0.067 0.067 1.147 90.595 40.265 LGA Y 110 Y 110 1.147 8 0.085 0.085 1.147 85.952 28.651 LGA W 111 W 111 0.647 10 0.011 0.011 0.761 90.476 25.850 LGA R 112 R 112 0.816 7 0.035 0.035 1.437 85.952 31.255 LGA K 113 K 113 1.622 5 0.033 0.033 1.649 75.000 33.333 LGA E 114 E 114 1.562 5 0.041 0.041 1.562 75.000 33.333 LGA N 115 N 115 1.592 4 0.231 0.231 1.592 77.143 38.571 LGA G 116 G 116 1.339 0 0.086 0.086 1.582 79.286 79.286 LGA E 117 E 117 0.687 5 0.034 0.034 0.806 90.476 40.212 LGA V 118 V 118 0.612 3 0.059 0.059 0.969 90.476 51.701 LGA E 119 E 119 0.574 5 0.030 0.030 0.600 92.857 41.270 LGA G 120 G 120 0.752 0 0.138 0.138 1.501 86.071 86.071 LGA T 121 T 121 3.186 3 0.549 0.549 4.319 49.286 28.163 LGA L 122 L 122 7.173 4 0.055 0.055 11.259 7.976 3.988 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 99 396 396 100.00 772 396 51.30 137 SUMMARY(RMSD_GDC): 1.651 1.671 1.671 60.328 33.904 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 99 137 4.0 97 1.44 62.956 67.381 6.306 LGA_LOCAL RMSD: 1.438 Number of atoms: 97 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.656 Number of assigned atoms: 99 Std_ASGN_ATOMS RMSD: 1.651 Standard rmsd on all 99 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.165746 * X + -0.964610 * Y + 0.205076 * Z + 25.745993 Y_new = 0.511232 * X + -0.093783 * Y + -0.854310 * Z + 151.867386 Z_new = 0.843309 * X + 0.246440 * Y + 0.477596 * Z + -33.739029 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.257281 -1.003411 0.476366 [DEG: 72.0369 -57.4912 27.2937 ] ZXZ: 0.235591 1.072880 1.286484 [DEG: 13.4983 61.4715 73.7101 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0592AL285_1-D1 REMARK 2: T0592-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0592AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 99 137 4.0 97 1.44 67.381 1.65 REMARK ---------------------------------------------------------- MOLECULE T0592AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3ilmA ATOM 1 N ASP 22 8.508 89.848 36.103 1.00 0.00 N ATOM 2 CA ASP 22 8.216 90.724 37.220 1.00 0.00 C ATOM 3 C ASP 22 8.245 92.193 36.790 1.00 0.00 C ATOM 4 O ASP 22 7.293 92.937 37.040 1.00 0.00 O ATOM 5 N LEU 23 9.331 92.605 36.133 1.00 0.00 N ATOM 6 CA LEU 23 9.459 93.981 35.665 1.00 0.00 C ATOM 7 C LEU 23 8.323 94.339 34.704 1.00 0.00 C ATOM 8 O LEU 23 7.811 95.445 34.740 1.00 0.00 O ATOM 9 N SER 24 7.931 93.400 33.848 1.00 0.00 N ATOM 10 CA SER 24 6.849 93.651 32.904 1.00 0.00 C ATOM 11 C SER 24 5.569 93.925 33.684 1.00 0.00 C ATOM 12 O SER 24 4.791 94.814 33.323 1.00 0.00 O ATOM 13 N ILE 25 5.351 93.178 34.765 1.00 0.00 N ATOM 14 CA ILE 25 4.167 93.401 35.581 1.00 0.00 C ATOM 15 C ILE 25 4.241 94.772 36.251 1.00 0.00 C ATOM 16 O ILE 25 3.241 95.513 36.303 1.00 0.00 O ATOM 17 N ASP 26 5.425 95.110 36.760 1.00 0.00 N ATOM 18 CA ASP 26 5.617 96.397 37.412 1.00 0.00 C ATOM 19 C ASP 26 5.263 97.504 36.430 1.00 0.00 C ATOM 20 O ASP 26 4.592 98.465 36.789 1.00 0.00 O ATOM 21 N ILE 27 5.702 97.367 35.186 1.00 0.00 N ATOM 22 CA ILE 27 5.418 98.392 34.186 1.00 0.00 C ATOM 23 C ILE 27 3.958 98.451 33.738 1.00 0.00 C ATOM 24 O ILE 27 3.478 99.502 33.332 1.00 0.00 O ATOM 25 N LYS 28 3.255 97.326 33.806 1.00 0.00 N ATOM 26 CA LYS 28 1.855 97.282 33.396 1.00 0.00 C ATOM 27 C LYS 28 0.894 97.611 34.521 1.00 0.00 C ATOM 28 O LYS 28 -0.106 98.293 34.311 1.00 0.00 O ATOM 29 N LYS 29 1.208 97.129 35.718 1.00 0.00 N ATOM 30 CA LYS 29 0.320 97.294 36.861 1.00 0.00 C ATOM 31 C LYS 29 0.863 97.899 38.136 1.00 0.00 C ATOM 32 O LYS 29 0.082 98.258 39.028 1.00 0.00 O ATOM 33 N GLY 30 2.182 98.013 38.232 1.00 0.00 N ATOM 34 CA GLY 30 2.768 98.494 39.463 1.00 0.00 C ATOM 35 C GLY 30 2.845 99.954 39.834 1.00 0.00 C ATOM 36 O GLY 30 2.586 100.854 39.040 1.00 0.00 O ATOM 37 N TYR 31 3.193 100.168 41.099 1.00 0.00 N ATOM 38 CA TYR 31 3.410 101.505 41.593 1.00 0.00 C ATOM 39 C TYR 31 4.505 102.065 40.722 1.00 0.00 C ATOM 40 O TYR 31 5.417 101.342 40.329 1.00 0.00 O ATOM 41 N GLU 32 4.401 103.357 40.396 1.00 0.00 N ATOM 42 CA GLU 32 5.307 104.152 39.567 1.00 0.00 C ATOM 43 C GLU 32 6.758 104.200 40.020 1.00 0.00 C ATOM 44 O GLU 32 7.668 104.329 39.210 1.00 0.00 O ATOM 45 N GLY 33 6.975 104.074 41.320 1.00 0.00 N ATOM 46 CA GLY 33 8.306 104.236 41.887 1.00 0.00 C ATOM 47 C GLY 33 9.433 103.225 41.642 1.00 0.00 C ATOM 48 O GLY 33 9.934 102.600 42.558 1.00 0.00 O ATOM 49 N ILE 34 9.889 103.127 40.407 1.00 0.00 N ATOM 50 CA ILE 34 11.030 102.301 40.101 1.00 0.00 C ATOM 51 C ILE 34 11.599 102.838 38.826 1.00 0.00 C ATOM 52 O ILE 34 10.938 103.548 38.085 1.00 0.00 O ATOM 53 N ILE 35 12.848 102.511 38.581 1.00 0.00 N ATOM 54 CA ILE 35 13.490 102.979 37.383 1.00 0.00 C ATOM 55 C ILE 35 14.254 101.841 36.753 1.00 0.00 C ATOM 56 O ILE 35 14.738 100.944 37.441 1.00 0.00 O ATOM 57 N VAL 36 14.299 101.860 35.427 1.00 0.00 N ATOM 58 CA VAL 36 15.015 100.854 34.663 1.00 0.00 C ATOM 59 C VAL 36 16.206 101.606 34.080 1.00 0.00 C ATOM 60 O VAL 36 16.032 102.662 33.473 1.00 0.00 O ATOM 61 N VAL 37 17.408 101.071 34.279 1.00 0.00 N ATOM 62 CA VAL 37 18.629 101.710 33.786 1.00 0.00 C ATOM 63 C VAL 37 19.327 100.857 32.733 1.00 0.00 C ATOM 64 O VAL 37 19.778 99.748 33.016 1.00 0.00 O ATOM 65 N ASP 38 19.376 101.371 31.508 1.00 0.00 N ATOM 66 CA ASP 38 20.043 100.684 30.403 1.00 0.00 C ATOM 67 C ASP 38 21.486 101.141 30.561 1.00 0.00 C ATOM 68 O ASP 38 21.782 102.334 30.458 1.00 0.00 O ATOM 69 N VAL 39 22.380 100.199 30.824 1.00 0.00 N ATOM 70 CA VAL 39 23.759 100.556 31.060 1.00 0.00 C ATOM 71 C VAL 39 24.728 100.322 29.899 1.00 0.00 C ATOM 72 O VAL 39 25.945 100.337 30.088 1.00 0.00 O ATOM 73 N ARG 40 24.191 100.136 28.698 1.00 0.00 N ATOM 74 CA ARG 40 25.024 99.910 27.527 1.00 0.00 C ATOM 75 C ARG 40 25.381 101.215 26.844 1.00 0.00 C ATOM 76 O ARG 40 25.041 102.302 27.309 1.00 0.00 O ATOM 77 N ASP 41 26.069 101.078 25.721 1.00 0.00 N ATOM 78 CA ASP 41 26.496 102.193 24.892 1.00 0.00 C ATOM 79 C ASP 41 25.272 103.070 24.574 1.00 0.00 C ATOM 80 O ASP 41 24.142 102.575 24.511 1.00 0.00 O ATOM 81 N ALA 42 25.489 104.366 24.382 1.00 0.00 N ATOM 82 CA ALA 42 24.386 105.278 24.078 1.00 0.00 C ATOM 83 C ALA 42 23.707 104.937 22.755 1.00 0.00 C ATOM 84 O ALA 42 22.480 104.792 22.681 1.00 0.00 O ATOM 85 N GLU 43 24.507 104.826 21.702 1.00 0.00 N ATOM 86 CA GLU 43 23.951 104.512 20.400 1.00 0.00 C ATOM 87 C GLU 43 23.212 103.188 20.472 1.00 0.00 C ATOM 88 O GLU 43 22.173 103.028 19.841 1.00 0.00 O ATOM 89 N ALA 44 23.729 102.245 21.252 1.00 0.00 N ATOM 90 CA ALA 44 23.070 100.945 21.372 1.00 0.00 C ATOM 91 C ALA 44 21.691 101.128 21.987 1.00 0.00 C ATOM 92 O ALA 44 20.718 100.546 21.533 1.00 0.00 O ATOM 93 N TYR 45 21.633 101.946 23.030 1.00 0.00 N ATOM 94 CA TYR 45 20.391 102.264 23.720 1.00 0.00 C ATOM 95 C TYR 45 19.417 102.801 22.694 1.00 0.00 C ATOM 96 O TYR 45 18.276 102.344 22.612 1.00 0.00 O ATOM 97 N LYS 46 19.895 103.768 21.911 1.00 0.00 N ATOM 98 CA LYS 46 19.105 104.429 20.875 1.00 0.00 C ATOM 99 C LYS 46 18.553 103.497 19.827 1.00 0.00 C ATOM 100 O LYS 46 17.425 103.671 19.370 1.00 0.00 O ATOM 101 N GLU 47 19.338 102.506 19.427 1.00 0.00 N ATOM 102 CA GLU 47 18.861 101.581 18.414 1.00 0.00 C ATOM 103 C GLU 47 17.768 100.708 19.007 1.00 0.00 C ATOM 104 O GLU 47 16.937 100.156 18.288 1.00 0.00 O ATOM 105 N CYS 48 17.755 100.593 20.327 1.00 0.00 N ATOM 106 CA CYS 48 16.723 99.788 20.944 1.00 0.00 C ATOM 107 C CYS 48 16.923 99.577 22.417 1.00 0.00 C ATOM 108 O CYS 48 17.993 99.144 22.837 1.00 0.00 O ATOM 109 N HIS 49 15.899 99.890 23.206 1.00 0.00 N ATOM 110 CA HIS 49 15.966 99.706 24.650 1.00 0.00 C ATOM 111 C HIS 49 14.607 99.346 25.206 1.00 0.00 C ATOM 112 O HIS 49 13.589 99.504 24.523 1.00 0.00 O ATOM 113 N ILE 50 14.604 98.859 26.445 1.00 0.00 N ATOM 114 CA ILE 50 13.382 98.473 27.131 1.00 0.00 C ATOM 115 C ILE 50 12.522 99.711 27.318 1.00 0.00 C ATOM 116 O ILE 50 13.018 100.786 27.673 1.00 0.00 O ATOM 117 N PRO 51 11.232 99.564 27.044 1.00 0.00 N ATOM 118 CA PRO 51 10.313 100.681 27.162 1.00 0.00 C ATOM 119 C PRO 51 10.388 101.335 28.540 1.00 0.00 C ATOM 120 O PRO 51 10.131 100.681 29.549 1.00 0.00 O ATOM 121 N THR 52 10.736 102.623 28.579 1.00 0.00 N ATOM 122 CA THR 52 10.826 103.335 29.846 1.00 0.00 C ATOM 123 C THR 52 12.231 103.451 30.433 1.00 0.00 C ATOM 124 O THR 52 12.486 104.317 31.282 1.00 0.00 O ATOM 125 N ALA 53 13.150 102.591 29.989 1.00 0.00 N ATOM 126 CA ALA 53 14.521 102.636 30.493 1.00 0.00 C ATOM 127 C ALA 53 15.207 103.964 30.231 1.00 0.00 C ATOM 128 O ALA 53 14.946 104.629 29.228 1.00 0.00 O ATOM 129 N ILE 54 16.081 104.342 31.157 1.00 0.00 N ATOM 130 CA ILE 54 16.855 105.565 31.028 1.00 0.00 C ATOM 131 C ILE 54 18.242 105.155 30.555 1.00 0.00 C ATOM 132 O ILE 54 18.726 104.074 30.885 1.00 0.00 O ATOM 133 N SER 55 18.879 106.021 29.779 1.00 0.00 N ATOM 134 CA SER 55 20.211 105.722 29.269 1.00 0.00 C ATOM 135 C SER 55 21.248 106.126 30.291 1.00 0.00 C ATOM 136 O SER 55 21.463 107.305 30.522 1.00 0.00 O ATOM 137 N ILE 56 21.869 105.150 30.933 1.00 0.00 N ATOM 138 CA ILE 56 22.912 105.471 31.894 1.00 0.00 C ATOM 139 C ILE 56 24.105 104.618 31.571 1.00 0.00 C ATOM 140 O ILE 56 24.402 103.646 32.271 1.00 0.00 O ATOM 141 N PRO 57 24.788 104.949 30.467 1.00 0.00 N ATOM 142 CA PRO 57 25.968 104.173 30.093 1.00 0.00 C ATOM 143 C PRO 57 26.886 104.062 31.304 1.00 0.00 C ATOM 144 O PRO 57 27.077 104.995 32.070 1.00 0.00 O ATOM 145 N GLY 58 27.416 102.866 31.467 1.00 0.00 N ATOM 146 CA GLY 58 28.267 102.494 32.572 1.00 0.00 C ATOM 147 C GLY 58 29.470 103.386 32.888 1.00 0.00 C ATOM 148 O GLY 58 29.849 103.514 34.048 1.00 0.00 O ATOM 149 N ASN 59 30.047 104.035 31.883 1.00 0.00 N ATOM 150 CA ASN 59 31.207 104.910 32.115 1.00 0.00 C ATOM 151 C ASN 59 30.904 106.053 33.075 1.00 0.00 C ATOM 152 O ASN 59 31.802 106.528 33.774 1.00 0.00 O ATOM 153 N LYS 60 29.645 106.490 33.115 1.00 0.00 N ATOM 154 CA LYS 60 29.256 107.593 33.998 1.00 0.00 C ATOM 155 C LYS 60 28.005 107.271 34.816 1.00 0.00 C ATOM 156 O LYS 60 27.291 108.176 35.266 1.00 0.00 O ATOM 157 N ILE 61 27.772 105.981 35.037 1.00 0.00 N ATOM 158 CA ILE 61 26.597 105.507 35.767 1.00 0.00 C ATOM 159 C ILE 61 26.413 106.046 37.177 1.00 0.00 C ATOM 160 O ILE 61 25.362 106.594 37.505 1.00 0.00 O ATOM 161 N ASN 62 27.425 105.907 38.018 1.00 0.00 N ATOM 162 CA ASN 62 27.327 106.404 39.395 1.00 0.00 C ATOM 163 C ASN 62 27.085 107.920 39.487 1.00 0.00 C ATOM 164 O ASN 62 26.147 108.357 40.137 1.00 0.00 O ATOM 165 N GLU 63 27.944 108.702 38.837 1.00 0.00 N ATOM 166 CA GLU 63 27.821 110.153 38.793 1.00 0.00 C ATOM 167 C GLU 63 26.394 110.527 38.377 1.00 0.00 C ATOM 168 O GLU 63 25.734 111.323 39.029 1.00 0.00 O ATOM 169 N ASP 64 25.948 109.949 37.267 1.00 0.00 N ATOM 170 CA ASP 64 24.626 110.201 36.721 1.00 0.00 C ATOM 171 C ASP 64 23.464 109.751 37.592 1.00 0.00 C ATOM 172 O ASP 64 22.490 110.461 37.745 1.00 0.00 O ATOM 173 N THR 65 23.558 108.554 38.142 1.00 0.00 N ATOM 174 CA THR 65 22.487 108.035 38.980 1.00 0.00 C ATOM 175 C THR 65 22.383 108.818 40.269 1.00 0.00 C ATOM 176 O THR 65 21.290 109.253 40.653 1.00 0.00 O ATOM 177 N THR 66 23.520 109.028 40.928 1.00 0.00 N ATOM 178 CA THR 66 23.511 109.747 42.207 1.00 0.00 C ATOM 179 C THR 66 23.055 111.200 42.100 1.00 0.00 C ATOM 180 O THR 66 22.601 111.788 43.078 1.00 0.00 O ATOM 181 N LYS 67 23.164 111.793 40.922 1.00 0.00 N ATOM 182 CA LYS 67 22.727 113.171 40.787 1.00 0.00 C ATOM 183 C LYS 67 21.289 113.212 40.280 1.00 0.00 C ATOM 184 O LYS 67 20.721 114.289 40.097 1.00 0.00 O ATOM 185 N ARG 68 20.686 112.046 40.082 1.00 0.00 N ATOM 186 CA ARG 68 19.341 112.004 39.534 1.00 0.00 C ATOM 187 C ARG 68 18.327 111.081 40.226 1.00 0.00 C ATOM 188 O ARG 68 17.117 111.290 40.128 1.00 0.00 O ATOM 189 N LEU 69 18.817 110.076 40.937 1.00 0.00 N ATOM 190 CA LEU 69 17.951 109.112 41.602 1.00 0.00 C ATOM 191 C LEU 69 18.127 109.052 43.110 1.00 0.00 C ATOM 192 O LEU 69 19.253 109.094 43.613 1.00 0.00 O ATOM 193 N SER 70 17.012 108.937 43.828 1.00 0.00 N ATOM 194 CA SER 70 17.063 108.814 45.284 1.00 0.00 C ATOM 195 C SER 70 17.663 107.433 45.555 1.00 0.00 C ATOM 196 O SER 70 17.433 106.498 44.791 1.00 0.00 O ATOM 197 N LYS 71 18.425 107.301 46.634 1.00 0.00 N ATOM 198 CA LYS 71 19.066 106.027 46.959 1.00 0.00 C ATOM 199 C LYS 71 18.095 104.940 47.401 1.00 0.00 C ATOM 200 O LYS 71 18.440 103.744 47.406 1.00 0.00 O ATOM 201 N GLU 72 16.886 105.352 47.766 1.00 0.00 N ATOM 202 CA GLU 72 15.861 104.420 48.207 1.00 0.00 C ATOM 203 C GLU 72 15.008 103.902 47.043 1.00 0.00 C ATOM 204 O GLU 72 14.257 102.934 47.208 1.00 0.00 O ATOM 205 N LYS 73 15.125 104.530 45.874 1.00 0.00 N ATOM 206 CA LYS 73 14.345 104.121 44.702 1.00 0.00 C ATOM 207 C LYS 73 14.647 102.702 44.222 1.00 0.00 C ATOM 208 O LYS 73 15.812 102.299 44.174 1.00 0.00 O ATOM 209 N VAL 74 13.601 101.948 43.882 1.00 0.00 N ATOM 210 CA VAL 74 13.788 100.589 43.368 1.00 0.00 C ATOM 211 C VAL 74 14.393 100.735 41.975 1.00 0.00 C ATOM 212 O VAL 74 13.835 101.419 41.108 1.00 0.00 O ATOM 213 N ILE 75 15.532 100.093 41.759 1.00 0.00 N ATOM 214 CA ILE 75 16.203 100.190 40.471 1.00 0.00 C ATOM 215 C ILE 75 16.492 98.826 39.837 1.00 0.00 C ATOM 216 O ILE 75 16.961 97.898 40.501 1.00 0.00 O ATOM 217 N ILE 76 16.192 98.718 38.547 1.00 0.00 N ATOM 218 CA ILE 76 16.438 97.505 37.783 1.00 0.00 C ATOM 219 C ILE 76 17.507 97.877 36.771 1.00 0.00 C ATOM 220 O ILE 76 17.393 98.891 36.082 1.00 0.00 O ATOM 221 N THR 77 18.559 97.074 36.699 1.00 0.00 N ATOM 222 CA THR 77 19.656 97.363 35.787 1.00 0.00 C ATOM 223 C THR 77 19.891 96.243 34.784 1.00 0.00 C ATOM 224 O THR 77 19.678 95.074 35.087 1.00 0.00 O ATOM 225 N TYR 78 20.312 96.613 33.580 1.00 0.00 N ATOM 226 CA TYR 78 20.628 95.629 32.559 1.00 0.00 C ATOM 227 C TYR 78 21.646 96.245 31.614 1.00 0.00 C ATOM 228 O TYR 78 21.585 97.436 31.316 1.00 0.00 O ATOM 229 N CYS 79 22.598 95.428 31.177 1.00 0.00 N ATOM 230 CA CYS 79 23.626 95.875 30.256 1.00 0.00 C ATOM 231 C CYS 79 23.650 94.873 29.118 1.00 0.00 C ATOM 232 O CYS 79 22.696 94.108 28.951 1.00 0.00 O ATOM 233 N TRP 80 24.738 94.843 28.353 1.00 0.00 N ATOM 234 CA TRP 80 24.844 93.932 27.214 1.00 0.00 C ATOM 235 C TRP 80 24.944 92.459 27.603 1.00 0.00 C ATOM 236 O TRP 80 24.579 91.570 26.820 1.00 0.00 O ATOM 237 N GLY 81 25.440 92.186 28.802 1.00 0.00 N ATOM 238 CA GLY 81 25.552 90.802 29.235 1.00 0.00 C ATOM 239 C GLY 81 25.597 90.719 30.746 1.00 0.00 C ATOM 240 O GLY 81 25.567 91.755 31.418 1.00 0.00 O ATOM 241 N CYS 84 25.688 89.509 31.290 1.00 0.00 N ATOM 242 CA CYS 84 25.728 89.343 32.736 1.00 0.00 C ATOM 243 C CYS 84 26.894 90.081 33.399 1.00 0.00 C ATOM 244 O CYS 84 26.733 90.655 34.477 1.00 0.00 O ATOM 245 N ASN 85 28.062 90.079 32.766 1.00 0.00 N ATOM 246 CA ASN 85 29.217 90.755 33.344 1.00 0.00 C ATOM 247 C ASN 85 28.973 92.258 33.462 1.00 0.00 C ATOM 248 O ASN 85 29.180 92.840 34.530 1.00 0.00 O ATOM 249 N GLY 86 28.540 92.896 32.379 1.00 0.00 N ATOM 250 CA GLY 86 28.301 94.333 32.431 1.00 0.00 C ATOM 251 C GLY 86 27.179 94.688 33.411 1.00 0.00 C ATOM 252 O GLY 86 27.243 95.695 34.119 1.00 0.00 O ATOM 253 N ALA 87 26.147 93.854 33.444 1.00 0.00 N ATOM 254 CA ALA 87 25.028 94.079 34.348 1.00 0.00 C ATOM 255 C ALA 87 25.475 93.967 35.794 1.00 0.00 C ATOM 256 O ALA 87 25.161 94.837 36.612 1.00 0.00 O ATOM 257 N THR 88 26.209 92.903 36.120 1.00 0.00 N ATOM 258 CA THR 88 26.653 92.726 37.500 1.00 0.00 C ATOM 259 C THR 88 27.590 93.857 37.912 1.00 0.00 C ATOM 260 O THR 88 27.576 94.297 39.057 1.00 0.00 O ATOM 261 N LYS 89 28.399 94.340 36.975 1.00 0.00 N ATOM 262 CA LYS 89 29.316 95.435 37.265 1.00 0.00 C ATOM 263 C LYS 89 28.509 96.716 37.580 1.00 0.00 C ATOM 264 O LYS 89 28.792 97.434 38.538 1.00 0.00 O ATOM 265 N ALA 90 27.498 96.998 36.771 1.00 0.00 N ATOM 266 CA ALA 90 26.667 98.170 37.005 1.00 0.00 C ATOM 267 C ALA 90 25.994 98.056 38.378 1.00 0.00 C ATOM 268 O ALA 90 25.984 99.015 39.155 1.00 0.00 O ATOM 269 N ALA 91 25.451 96.880 38.682 1.00 0.00 N ATOM 270 CA ALA 91 24.801 96.667 39.965 1.00 0.00 C ATOM 271 C ALA 91 25.752 96.903 41.148 1.00 0.00 C ATOM 272 O ALA 91 25.365 97.522 42.155 1.00 0.00 O ATOM 273 N ALA 92 26.988 96.419 41.033 1.00 0.00 N ATOM 274 CA ALA 92 27.961 96.609 42.108 1.00 0.00 C ATOM 275 C ALA 92 28.262 98.085 42.298 1.00 0.00 C ATOM 276 O ALA 92 28.302 98.574 43.432 1.00 0.00 O ATOM 277 N LYS 93 28.471 98.789 41.186 1.00 0.00 N ATOM 278 CA LYS 93 28.776 100.225 41.221 1.00 0.00 C ATOM 279 C LYS 93 27.733 101.030 41.982 1.00 0.00 C ATOM 280 O LYS 93 28.052 101.743 42.938 1.00 0.00 O ATOM 281 N PHE 94 26.477 100.913 41.557 1.00 0.00 N ATOM 282 CA PHE 94 25.397 101.657 42.190 1.00 0.00 C ATOM 283 C PHE 94 25.290 101.420 43.692 1.00 0.00 C ATOM 284 O PHE 94 25.084 102.364 44.452 1.00 0.00 O ATOM 285 N ALA 95 25.437 100.162 44.111 1.00 0.00 N ATOM 286 CA ALA 95 25.355 99.788 45.528 1.00 0.00 C ATOM 287 C ALA 95 26.525 100.371 46.301 1.00 0.00 C ATOM 288 O ALA 95 26.358 100.872 47.412 1.00 0.00 O ATOM 289 N GLN 96 27.714 100.301 45.710 1.00 0.00 N ATOM 290 CA GLN 96 28.900 100.839 46.365 1.00 0.00 C ATOM 291 C GLN 96 28.727 102.340 46.489 1.00 0.00 C ATOM 292 O GLN 96 29.401 102.986 47.282 1.00 0.00 O ATOM 293 N LEU 97 27.799 102.890 45.716 1.00 0.00 N ATOM 294 CA LEU 97 27.543 104.325 45.740 1.00 0.00 C ATOM 295 C LEU 97 26.453 104.677 46.733 1.00 0.00 C ATOM 296 O LEU 97 26.065 105.841 46.847 1.00 0.00 O ATOM 297 N GLY 98 25.952 103.678 47.451 1.00 0.00 N ATOM 298 CA GLY 98 24.919 103.968 48.422 1.00 0.00 C ATOM 299 C GLY 98 23.494 103.616 48.039 1.00 0.00 C ATOM 300 O GLY 98 22.602 103.716 48.877 1.00 0.00 O ATOM 301 N PHE 99 23.254 103.215 46.792 1.00 0.00 N ATOM 302 CA PHE 99 21.896 102.842 46.388 1.00 0.00 C ATOM 303 C PHE 99 21.508 101.568 47.134 1.00 0.00 C ATOM 304 O PHE 99 22.299 100.627 47.223 1.00 0.00 O ATOM 305 N ARG 100 18.265 99.620 46.767 1.00 0.00 N ATOM 306 CA ARG 100 17.394 98.611 46.176 1.00 0.00 C ATOM 307 C ARG 100 17.707 98.457 44.703 1.00 0.00 C ATOM 308 O ARG 100 16.984 98.971 43.852 1.00 0.00 O ATOM 309 N VAL 101 18.778 97.745 44.391 1.00 0.00 N ATOM 310 CA VAL 101 19.140 97.555 43.003 1.00 0.00 C ATOM 311 C VAL 101 19.214 96.071 42.708 1.00 0.00 C ATOM 312 O VAL 101 19.681 95.279 43.527 1.00 0.00 O ATOM 313 N LYS 102 18.738 95.699 41.532 1.00 0.00 N ATOM 314 CA LYS 102 18.749 94.312 41.121 1.00 0.00 C ATOM 315 C LYS 102 19.032 94.245 39.634 1.00 0.00 C ATOM 316 O LYS 102 18.791 95.206 38.896 1.00 0.00 O ATOM 317 N GLU 103 19.569 93.110 39.204 1.00 0.00 N ATOM 318 CA GLU 103 19.876 92.901 37.801 1.00 0.00 C ATOM 319 C GLU 103 18.580 92.487 37.127 1.00 0.00 C ATOM 320 O GLU 103 17.620 92.112 37.793 1.00 0.00 O ATOM 321 N LEU 104 18.554 92.581 35.804 1.00 0.00 N ATOM 322 CA LEU 104 17.405 92.153 35.028 1.00 0.00 C ATOM 323 C LEU 104 17.966 90.935 34.302 1.00 0.00 C ATOM 324 O LEU 104 18.610 91.066 33.261 1.00 0.00 O ATOM 325 N ILE 105 17.758 89.752 34.880 1.00 0.00 N ATOM 326 CA ILE 105 18.264 88.516 34.289 1.00 0.00 C ATOM 327 C ILE 105 17.918 88.431 32.807 1.00 0.00 C ATOM 328 O ILE 105 16.783 88.686 32.412 1.00 0.00 O ATOM 329 N GLY 106 18.904 88.099 31.985 1.00 0.00 N ATOM 330 CA GLY 106 18.653 87.967 30.563 1.00 0.00 C ATOM 331 C GLY 106 18.714 89.250 29.765 1.00 0.00 C ATOM 332 O GLY 106 18.835 89.213 28.537 1.00 0.00 O ATOM 333 N GLY 107 18.615 90.382 30.451 1.00 0.00 N ATOM 334 CA GLY 107 18.680 91.662 29.777 1.00 0.00 C ATOM 335 C GLY 107 17.616 91.866 28.716 1.00 0.00 C ATOM 336 O GLY 107 16.516 91.323 28.806 1.00 0.00 O ATOM 337 N ILE 108 17.950 92.652 27.699 1.00 0.00 N ATOM 338 CA ILE 108 17.031 92.956 26.611 1.00 0.00 C ATOM 339 C ILE 108 16.443 91.698 25.967 1.00 0.00 C ATOM 340 O ILE 108 15.217 91.574 25.807 1.00 0.00 O ATOM 341 N GLU 109 17.322 90.773 25.589 1.00 0.00 N ATOM 342 CA GLU 109 16.906 89.531 24.943 1.00 0.00 C ATOM 343 C GLU 109 15.798 88.816 25.703 1.00 0.00 C ATOM 344 O GLU 109 14.797 88.398 25.109 1.00 0.00 O ATOM 345 N TYR 110 15.980 88.664 27.009 1.00 0.00 N ATOM 346 CA TYR 110 14.985 87.974 27.821 1.00 0.00 C ATOM 347 C TYR 110 13.678 88.747 27.854 1.00 0.00 C ATOM 348 O TYR 110 12.601 88.156 27.968 1.00 0.00 O ATOM 349 N TRP 111 13.781 90.071 27.754 1.00 0.00 N ATOM 350 CA TRP 111 12.608 90.940 27.795 1.00 0.00 C ATOM 351 C TRP 111 11.779 90.779 26.527 1.00 0.00 C ATOM 352 O TRP 111 10.547 90.687 26.572 1.00 0.00 O ATOM 353 N ARG 112 12.458 90.727 25.389 1.00 0.00 N ATOM 354 CA ARG 112 11.777 90.553 24.116 1.00 0.00 C ATOM 355 C ARG 112 11.105 89.179 24.097 1.00 0.00 C ATOM 356 O ARG 112 9.940 89.037 23.721 1.00 0.00 O ATOM 357 N LYS 113 11.851 88.164 24.511 1.00 0.00 N ATOM 358 CA LYS 113 11.336 86.806 24.533 1.00 0.00 C ATOM 359 C LYS 113 9.946 86.680 25.168 1.00 0.00 C ATOM 360 O LYS 113 9.116 85.909 24.688 1.00 0.00 O ATOM 361 N GLU 114 9.691 87.421 26.241 1.00 0.00 N ATOM 362 CA GLU 114 8.397 87.338 26.910 1.00 0.00 C ATOM 363 C GLU 114 7.396 88.369 26.414 1.00 0.00 C ATOM 364 O GLU 114 6.396 88.634 27.074 1.00 0.00 O ATOM 365 N ASN 115 7.679 88.963 25.257 1.00 0.00 N ATOM 366 CA ASN 115 6.778 89.947 24.684 1.00 0.00 C ATOM 367 C ASN 115 6.906 91.395 25.128 1.00 0.00 C ATOM 368 O ASN 115 6.076 92.228 24.750 1.00 0.00 O ATOM 369 N GLY 116 7.931 91.716 25.911 1.00 0.00 N ATOM 370 CA GLY 116 8.097 93.092 26.358 1.00 0.00 C ATOM 371 C GLY 116 8.415 94.063 25.223 1.00 0.00 C ATOM 372 O GLY 116 9.264 93.769 24.384 1.00 0.00 O ATOM 373 N GLU 117 7.748 95.229 25.170 1.00 0.00 N ATOM 374 CA GLU 117 7.951 96.249 24.136 1.00 0.00 C ATOM 375 C GLU 117 9.357 96.843 24.110 1.00 0.00 C ATOM 376 O GLU 117 10.004 96.981 25.143 1.00 0.00 O ATOM 377 N VAL 118 9.813 97.210 22.922 1.00 0.00 N ATOM 378 CA VAL 118 11.116 97.816 22.765 1.00 0.00 C ATOM 379 C VAL 118 10.974 99.100 21.977 1.00 0.00 C ATOM 380 O VAL 118 10.376 99.105 20.905 1.00 0.00 O ATOM 381 N GLU 119 11.518 100.191 22.507 1.00 0.00 N ATOM 382 CA GLU 119 11.449 101.464 21.811 1.00 0.00 C ATOM 383 C GLU 119 12.824 101.875 21.272 1.00 0.00 C ATOM 384 O GLU 119 13.865 101.551 21.851 1.00 0.00 O ATOM 385 N GLY 120 12.822 102.571 20.141 1.00 0.00 N ATOM 386 CA GLY 120 14.071 103.010 19.549 1.00 0.00 C ATOM 387 C GLY 120 13.998 104.436 19.050 1.00 0.00 C ATOM 388 O GLY 120 12.933 104.920 18.660 1.00 0.00 O ATOM 389 N THR 121 15.147 105.102 19.069 1.00 0.00 N ATOM 390 CA THR 121 15.277 106.486 18.623 1.00 0.00 C ATOM 391 C THR 121 15.808 106.538 17.193 1.00 0.00 C ATOM 392 O THR 121 16.573 105.666 16.781 1.00 0.00 O ATOM 393 N LEU 122 15.408 107.568 16.446 1.00 0.00 N ATOM 394 CA LEU 122 15.819 107.717 15.054 1.00 0.00 C ATOM 395 C LEU 122 16.130 109.169 14.697 1.00 0.00 C ATOM 396 O LEU 122 16.897 109.446 13.765 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 396 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 34.79 79.4 194 71.3 272 ARMSMC SECONDARY STRUCTURE . . 16.55 91.4 93 72.7 128 ARMSMC SURFACE . . . . . . . . 40.41 72.9 107 61.5 174 ARMSMC BURIED . . . . . . . . 26.26 87.4 87 88.8 98 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 113 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 107 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 53 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 77 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 92 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 75 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 45 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 65 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 37 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 19 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 21 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.65 (Number of atoms: 99) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.65 99 72.3 137 CRMSCA CRN = ALL/NP . . . . . 0.0167 CRMSCA SECONDARY STRUCTURE . . 0.83 47 73.4 64 CRMSCA SURFACE . . . . . . . . 1.91 55 62.5 88 CRMSCA BURIED . . . . . . . . 1.25 44 89.8 49 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.67 396 58.8 674 CRMSMC SECONDARY STRUCTURE . . 0.83 188 59.1 318 CRMSMC SURFACE . . . . . . . . 1.93 220 50.5 436 CRMSMC BURIED . . . . . . . . 1.29 176 73.9 238 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 537 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 485 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 266 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 364 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 173 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.67 396 36.5 1085 CRMSALL SECONDARY STRUCTURE . . 0.83 188 36.0 522 CRMSALL SURFACE . . . . . . . . 1.93 220 30.7 716 CRMSALL BURIED . . . . . . . . 1.29 176 47.7 369 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.214 1.000 0.500 99 72.3 137 ERRCA SECONDARY STRUCTURE . . 0.698 1.000 0.500 47 73.4 64 ERRCA SURFACE . . . . . . . . 1.424 1.000 0.500 55 62.5 88 ERRCA BURIED . . . . . . . . 0.953 1.000 0.500 44 89.8 49 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.193 1.000 0.500 396 58.8 674 ERRMC SECONDARY STRUCTURE . . 0.698 1.000 0.500 188 59.1 318 ERRMC SURFACE . . . . . . . . 1.374 1.000 0.500 220 50.5 436 ERRMC BURIED . . . . . . . . 0.966 1.000 0.500 176 73.9 238 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 537 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 485 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 266 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 364 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 173 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.193 1.000 0.500 396 36.5 1085 ERRALL SECONDARY STRUCTURE . . 0.698 1.000 0.500 188 36.0 522 ERRALL SURFACE . . . . . . . . 1.374 1.000 0.500 220 30.7 716 ERRALL BURIED . . . . . . . . 0.966 1.000 0.500 176 47.7 369 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 58 83 92 98 99 99 137 DISTCA CA (P) 42.34 60.58 67.15 71.53 72.26 137 DISTCA CA (RMS) 0.60 0.93 1.18 1.51 1.65 DISTCA ALL (N) 229 338 371 392 395 396 1085 DISTALL ALL (P) 21.11 31.15 34.19 36.13 36.41 1085 DISTALL ALL (RMS) 0.59 0.94 1.16 1.44 1.58 DISTALL END of the results output