####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 63 ( 252), selected 57 , name T0590TS328_1-D1 # Molecule2: number of CA atoms 72 ( 1083), selected 57 , name T0590-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0590TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 80 - 97 4.99 13.09 LONGEST_CONTINUOUS_SEGMENT: 18 81 - 98 4.94 13.35 LONGEST_CONTINUOUS_SEGMENT: 18 85 - 102 4.96 9.97 LCS_AVERAGE: 23.37 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 60 - 72 1.79 17.09 LCS_AVERAGE: 12.74 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 62 - 69 0.95 15.43 LONGEST_CONTINUOUS_SEGMENT: 8 63 - 70 0.96 17.56 LONGEST_CONTINUOUS_SEGMENT: 8 89 - 96 0.84 21.17 LONGEST_CONTINUOUS_SEGMENT: 8 115 - 122 0.92 9.30 LCS_AVERAGE: 8.65 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 57 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 60 V 60 6 13 17 3 6 8 12 12 12 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT L 61 L 61 6 13 17 3 7 10 12 12 12 13 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT P 62 P 62 8 13 17 3 7 10 12 12 12 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT T 63 T 63 8 13 17 3 6 10 12 12 12 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT A 64 A 64 8 13 17 3 6 10 12 12 12 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT R 65 R 65 8 13 17 3 6 10 12 12 12 12 19 22 23 26 26 29 31 32 34 38 42 45 47 LCS_GDT F 66 F 66 8 13 17 3 7 10 12 12 12 13 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT T 67 T 67 8 13 17 3 7 10 12 12 12 12 13 16 23 23 26 28 29 31 34 38 42 45 47 LCS_GDT S 68 S 68 8 13 17 3 7 10 12 12 12 13 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT D 69 D 69 8 13 17 3 7 9 12 12 12 12 13 15 16 19 25 25 29 30 30 34 36 38 46 LCS_GDT I 70 I 70 8 13 17 4 7 10 12 12 12 12 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT T 71 T 71 6 13 17 4 6 6 6 7 9 12 13 15 17 21 24 25 27 31 33 37 39 42 47 LCS_GDT E 72 E 72 6 13 17 4 6 10 12 12 12 12 13 15 17 18 24 25 28 31 34 37 42 44 47 LCS_GDT G 73 G 73 6 9 17 4 6 8 8 9 11 13 14 15 19 21 23 25 28 31 34 38 42 45 47 LCS_GDT F 74 F 74 6 9 17 4 6 6 6 7 10 12 13 15 17 20 23 25 28 30 34 38 42 45 47 LCS_GDT A 75 A 75 5 9 17 3 4 5 7 9 12 14 15 16 20 23 23 26 28 30 34 38 42 45 47 LCS_GDT P 76 P 76 4 9 17 3 4 4 5 7 12 14 15 16 20 23 23 25 28 30 34 38 42 45 47 LCS_GDT L 77 L 77 7 9 16 3 7 7 9 10 11 14 15 16 18 23 23 25 26 30 34 38 42 45 47 LCS_GDT S 78 S 78 7 8 16 4 7 7 9 10 12 14 15 16 20 23 23 25 26 30 34 38 42 45 47 LCS_GDT V 79 V 79 7 8 16 5 7 7 9 10 12 14 15 16 20 23 23 25 26 30 34 38 42 45 47 LCS_GDT R 80 R 80 7 8 18 5 7 7 9 10 10 12 15 16 20 23 23 25 26 28 34 38 42 45 47 LCS_GDT F 81 F 81 7 8 18 5 7 7 9 10 10 12 15 16 20 23 23 25 25 28 34 38 42 45 47 LCS_GDT K 82 K 82 7 8 18 5 7 7 9 10 10 12 15 16 20 23 23 25 25 28 34 38 42 45 47 LCS_GDT D 83 D 83 7 8 18 5 7 7 9 10 10 12 15 16 16 16 16 25 25 26 28 33 40 42 45 LCS_GDT F 84 F 84 4 8 18 4 4 5 5 6 10 12 15 16 20 23 23 25 27 30 34 38 42 45 47 LCS_GDT S 85 S 85 4 6 18 4 4 5 5 6 10 10 13 16 16 23 23 25 27 30 34 38 42 45 47 LCS_GDT E 86 E 86 4 6 18 4 6 8 8 9 10 14 17 20 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT N 87 N 87 4 6 18 4 4 5 5 9 11 13 13 20 24 26 26 29 31 32 34 37 42 45 47 LCS_GDT A 88 A 88 3 9 18 0 3 3 4 6 9 11 13 17 18 20 22 28 29 32 34 37 42 45 47 LCS_GDT T 89 T 89 8 9 18 4 7 8 8 8 10 11 18 22 24 26 26 29 31 32 34 37 42 45 47 LCS_GDT S 90 S 90 8 9 18 4 7 8 8 8 9 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT R 91 R 91 8 9 18 4 7 8 8 8 11 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT L 92 L 92 8 9 18 4 7 8 8 8 10 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT W 93 W 93 8 9 18 4 7 8 8 8 10 14 18 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT M 94 M 94 8 9 18 3 7 8 8 8 10 14 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT F 95 F 95 8 9 18 0 7 8 8 8 10 12 17 22 24 26 26 29 31 32 34 37 39 43 46 LCS_GDT G 96 G 96 8 9 18 0 3 8 8 8 9 12 15 17 20 24 25 29 31 32 34 37 39 42 45 LCS_GDT D 97 D 97 3 9 18 2 5 5 6 8 9 12 13 17 20 22 23 29 31 32 34 37 39 42 44 LCS_GDT G 98 G 98 3 7 18 1 5 5 6 8 10 12 13 17 20 22 23 29 30 32 34 37 39 42 44 LCS_GDT N 99 N 99 3 7 18 3 3 4 6 8 9 12 13 14 19 21 23 25 29 30 32 37 37 39 41 LCS_GDT T 100 T 100 3 7 18 3 5 5 6 8 9 12 13 14 19 21 23 28 31 32 34 37 38 41 44 LCS_GDT S 101 S 101 3 7 18 3 5 5 6 8 9 12 13 14 19 21 23 28 31 32 34 37 38 41 44 LCS_GDT D 102 D 102 3 7 18 3 5 5 6 6 8 12 13 16 19 22 23 29 31 32 34 37 39 42 44 LCS_GDT T 109 T 109 3 4 16 4 7 7 9 10 12 14 15 16 20 23 23 25 26 28 33 38 42 45 47 LCS_GDT F 110 F 110 3 4 16 0 3 7 9 10 12 14 15 16 20 23 23 25 26 28 34 38 42 45 47 LCS_GDT F 111 F 111 4 6 16 4 4 4 8 10 12 14 15 16 20 23 23 25 26 28 34 38 42 45 47 LCS_GDT N 112 N 112 4 6 16 4 4 4 7 9 10 12 15 16 20 23 23 25 25 28 34 37 42 45 47 LCS_GDT E 113 E 113 4 9 16 4 4 4 5 7 12 14 15 16 20 23 23 25 28 30 34 38 42 45 47 LCS_GDT G 114 G 114 6 9 16 4 4 6 8 9 12 14 15 19 20 23 24 26 28 31 34 38 42 45 47 LCS_GDT E 115 E 115 8 9 14 4 7 8 8 9 12 15 17 20 24 26 26 28 31 32 34 38 42 45 47 LCS_GDT Y 116 Y 116 8 9 14 5 7 8 8 9 12 15 17 21 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT I 117 I 117 8 9 14 5 7 8 8 9 12 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT V 118 V 118 8 9 14 5 7 8 8 9 11 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT S 119 S 119 8 9 14 5 7 8 8 9 11 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT L 120 L 120 8 9 14 5 7 8 8 9 11 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT I 121 I 121 8 9 14 5 7 8 8 9 11 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_GDT V 122 V 122 8 9 14 3 4 6 8 9 11 15 19 22 24 26 26 29 31 32 34 38 42 45 47 LCS_AVERAGE LCS_A: 14.92 ( 8.65 12.74 23.37 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 7 10 12 12 12 15 19 22 24 26 26 29 31 32 34 38 42 45 47 GDT PERCENT_AT 6.94 9.72 13.89 16.67 16.67 16.67 20.83 26.39 30.56 33.33 36.11 36.11 40.28 43.06 44.44 47.22 52.78 58.33 62.50 65.28 GDT RMS_LOCAL 0.33 0.47 1.12 1.33 1.33 1.33 2.83 3.10 3.31 3.67 3.83 3.83 4.54 4.85 4.92 5.28 6.17 6.49 6.82 7.01 GDT RMS_ALL_AT 9.25 17.66 16.90 17.24 17.24 17.24 8.88 9.86 9.97 9.51 9.39 9.39 9.60 9.56 9.56 9.16 9.09 9.38 9.20 9.33 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 60 V 60 3.696 3 0.590 0.590 5.093 45.952 26.259 LGA L 61 L 61 3.149 4 0.075 0.075 3.561 53.810 26.905 LGA P 62 P 62 1.454 3 0.198 0.198 3.725 67.619 38.639 LGA T 63 T 63 2.108 3 0.064 0.064 2.855 69.048 39.456 LGA A 64 A 64 1.810 1 0.092 0.092 2.330 75.119 60.095 LGA R 65 R 65 3.217 7 0.088 0.088 4.120 50.476 18.355 LGA F 66 F 66 2.466 7 0.123 0.123 4.411 52.262 19.004 LGA T 67 T 67 4.667 3 0.129 0.129 4.667 38.810 22.177 LGA S 68 S 68 2.157 2 0.180 0.180 5.679 44.881 29.921 LGA D 69 D 69 5.786 4 0.212 0.212 6.456 28.333 14.167 LGA I 70 I 70 2.498 4 0.119 0.119 4.455 49.048 24.524 LGA T 71 T 71 7.401 3 0.123 0.123 8.917 9.762 5.578 LGA E 72 E 72 9.519 5 0.054 0.054 9.632 1.786 0.794 LGA G 73 G 73 11.295 0 0.172 0.172 11.295 0.000 0.000 LGA F 74 F 74 12.436 7 0.021 0.021 12.436 0.000 0.000 LGA A 75 A 75 11.515 1 0.026 0.026 13.712 0.000 0.000 LGA P 76 P 76 12.703 3 0.144 0.144 13.012 0.000 0.000 LGA L 77 L 77 14.554 4 0.632 0.632 14.554 0.000 0.000 LGA S 78 S 78 14.543 2 0.109 0.109 14.556 0.000 0.000 LGA V 79 V 79 14.912 3 0.086 0.086 15.326 0.000 0.000 LGA R 80 R 80 14.932 7 0.094 0.094 14.940 0.000 0.000 LGA F 81 F 81 15.298 7 0.043 0.043 15.346 0.000 0.000 LGA K 82 K 82 15.125 5 0.175 0.175 15.125 0.000 0.000 LGA D 83 D 83 15.665 4 0.526 0.526 15.665 0.000 0.000 LGA F 84 F 84 11.256 7 0.429 0.429 12.542 0.119 0.043 LGA S 85 S 85 11.092 2 0.033 0.033 11.486 0.714 0.476 LGA E 86 E 86 7.433 5 0.029 0.029 9.164 5.357 2.381 LGA N 87 N 87 7.904 4 0.601 0.601 7.904 8.571 4.286 LGA A 88 A 88 8.112 1 0.637 0.637 8.112 10.952 8.762 LGA T 89 T 89 4.580 3 0.576 0.576 5.224 46.786 26.735 LGA S 90 S 90 1.644 2 0.048 0.048 3.203 63.214 42.143 LGA R 91 R 91 3.220 7 0.042 0.042 3.843 53.810 19.567 LGA L 92 L 92 1.873 4 0.039 0.039 2.431 70.833 35.417 LGA W 93 W 93 4.551 10 0.143 0.143 6.190 32.262 9.218 LGA M 94 M 94 4.163 4 0.138 0.138 4.163 46.905 23.452 LGA F 95 F 95 6.100 7 0.647 0.647 7.146 15.476 5.628 LGA G 96 G 96 9.136 0 0.732 0.732 10.586 2.143 2.143 LGA D 97 D 97 12.875 4 0.605 0.605 14.440 0.000 0.000 LGA G 98 G 98 13.622 0 0.471 0.471 14.499 0.000 0.000 LGA N 99 N 99 17.094 4 0.575 0.575 17.094 0.000 0.000 LGA T 100 T 100 13.500 3 0.092 0.092 14.785 0.000 0.000 LGA S 101 S 101 13.249 2 0.627 0.627 14.263 0.000 0.000 LGA D 102 D 102 12.413 4 0.114 0.114 12.582 0.000 0.000 LGA T 109 T 109 16.786 3 0.050 0.050 16.786 0.000 0.000 LGA F 110 F 110 15.564 7 0.283 0.283 15.993 0.000 0.000 LGA F 111 F 111 15.082 7 0.644 0.644 16.440 0.000 0.000 LGA N 112 N 112 14.877 4 0.187 0.187 14.877 0.000 0.000 LGA E 113 E 113 11.056 5 0.082 0.082 12.685 0.000 0.000 LGA G 114 G 114 9.548 0 0.148 0.148 9.645 6.310 6.310 LGA E 115 E 115 6.647 5 0.182 0.182 8.289 13.095 5.820 LGA Y 116 Y 116 5.153 8 0.066 0.066 5.738 23.810 7.937 LGA I 117 I 117 4.236 4 0.113 0.113 4.375 41.905 20.952 LGA V 118 V 118 3.840 3 0.027 0.027 4.347 40.238 22.993 LGA S 119 S 119 3.731 2 0.029 0.029 3.731 43.333 28.889 LGA L 120 L 120 3.637 4 0.033 0.033 4.045 41.786 20.893 LGA I 121 I 121 3.779 4 0.105 0.105 3.803 43.333 21.667 LGA V 122 V 122 3.721 3 0.240 0.240 5.730 36.310 20.748 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 57 228 228 100.00 452 228 50.44 72 SUMMARY(RMSD_GDC): 8.313 8.244 8.244 17.141 9.199 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 63 72 4.0 19 3.10 25.000 22.137 0.594 LGA_LOCAL RMSD: 3.100 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.862 Number of assigned atoms: 57 Std_ASGN_ATOMS RMSD: 8.313 Standard rmsd on all 57 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.984394 * X + 0.128843 * Y + -0.119870 * Z + 6.989679 Y_new = 0.118252 * X + -0.020163 * Y + -0.992779 * Z + 45.497490 Z_new = -0.130329 * X + -0.991460 * Y + 0.004612 * Z + 32.103302 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.022038 0.130701 -1.566144 [DEG: 173.1500 7.4886 -89.7335 ] ZXZ: -0.120161 1.566184 -3.010890 [DEG: -6.8847 89.7357 -172.5113 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0590TS328_1-D1 REMARK 2: T0590-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0590TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 63 72 4.0 19 3.10 22.137 8.31 REMARK ---------------------------------------------------------- MOLECULE T0590TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0590 REMARK MODEL 1 REMARK PARENT 3ii1_A ATOM 173 N VAL 60 -17.045 0.269 9.592 1.00 3.00 N ATOM 174 CA VAL 60 -16.336 -0.638 10.490 1.00 3.00 C ATOM 175 C VAL 60 -15.117 -1.220 9.797 1.00 3.00 C ATOM 176 O VAL 60 -14.422 -2.065 10.371 1.00 3.00 O ATOM 177 N LEU 61 -14.842 -0.811 8.550 1.00 3.00 N ATOM 178 CA LEU 61 -13.587 -1.295 7.851 1.00 3.00 C ATOM 179 C LEU 61 -12.333 -0.777 8.542 1.00 3.00 C ATOM 180 O LEU 61 -12.348 0.351 9.022 1.00 3.00 O ATOM 181 N PRO 62 -11.298 -1.607 8.638 1.00 3.00 N ATOM 182 CA PRO 62 -9.978 -1.194 9.104 1.00 3.00 C ATOM 183 C PRO 62 -9.189 -0.748 7.854 1.00 3.00 C ATOM 184 O PRO 62 -8.988 -1.530 6.899 1.00 3.00 O ATOM 185 N THR 63 -8.797 0.523 7.803 1.00 3.00 N ATOM 186 CA THR 63 -8.041 0.973 6.639 1.00 3.00 C ATOM 187 C THR 63 -6.597 1.043 7.096 1.00 3.00 C ATOM 188 O THR 63 -6.310 1.612 8.122 1.00 3.00 O ATOM 189 N ALA 64 -5.693 0.465 6.330 1.00 3.00 N ATOM 190 CA ALA 64 -4.293 0.477 6.681 1.00 3.00 C ATOM 191 C ALA 64 -3.454 0.995 5.510 1.00 3.00 C ATOM 192 O ALA 64 -3.518 0.463 4.407 1.00 3.00 O ATOM 193 N ARG 65 -2.698 2.061 5.733 1.00 3.00 N ATOM 194 CA ARG 65 -1.862 2.645 4.655 1.00 3.00 C ATOM 195 C ARG 65 -0.408 2.231 4.930 1.00 3.00 C ATOM 196 O ARG 65 0.112 2.382 6.066 1.00 3.00 O ATOM 197 N PHE 66 0.221 1.641 3.908 1.00 3.00 N ATOM 198 CA PHE 66 1.615 1.241 4.023 1.00 3.00 C ATOM 199 C PHE 66 2.418 1.946 2.951 1.00 3.00 C ATOM 200 O PHE 66 2.072 1.903 1.742 1.00 3.00 O ATOM 201 N THR 67 3.490 2.597 3.400 1.00 3.00 N ATOM 202 CA THR 67 4.371 3.361 2.532 1.00 3.00 C ATOM 203 C THR 67 5.772 2.782 2.530 1.00 3.00 C ATOM 204 O THR 67 6.482 2.813 3.542 1.00 3.00 O ATOM 205 N SER 68 6.193 2.315 1.357 1.00 3.00 N ATOM 206 CA SER 68 7.506 1.718 1.164 1.00 3.00 C ATOM 207 C SER 68 8.425 2.814 0.639 1.00 3.00 C ATOM 208 O SER 68 8.257 3.180 -0.506 1.00 3.00 O ATOM 209 N ASP 69 9.349 3.342 1.433 1.00 3.00 N ATOM 210 CA ASP 69 10.040 4.564 1.059 1.00 3.00 C ATOM 211 C ASP 69 11.348 4.311 0.328 1.00 3.00 C ATOM 212 O ASP 69 11.920 5.181 -0.293 1.00 3.00 O ATOM 213 N ILE 70 11.799 3.079 0.446 1.00 3.00 N ATOM 214 CA ILE 70 13.024 2.498 -0.185 1.00 3.00 C ATOM 215 C ILE 70 13.089 2.768 -1.668 1.00 3.00 C ATOM 216 O ILE 70 12.096 2.510 -2.431 1.00 3.00 O ATOM 217 N THR 71 14.279 3.180 -2.096 1.00 3.00 N ATOM 218 CA THR 71 14.521 3.546 -3.468 1.00 3.00 C ATOM 219 C THR 71 14.610 2.391 -4.478 1.00 3.00 C ATOM 220 O THR 71 14.550 2.639 -5.698 1.00 3.00 O ATOM 221 N GLU 72 14.717 1.142 -4.031 1.00 3.00 N ATOM 222 CA GLU 72 14.804 -0.020 -4.983 1.00 3.00 C ATOM 223 C GLU 72 14.365 -1.339 -4.389 1.00 3.00 C ATOM 224 O GLU 72 14.336 -1.479 -3.182 1.00 3.00 O ATOM 225 N GLY 73 14.058 -2.329 -5.214 1.00 3.00 N ATOM 226 CA GLY 73 13.741 -3.649 -4.676 1.00 3.00 C ATOM 227 C GLY 73 12.354 -3.730 -4.099 1.00 3.00 C ATOM 228 O GLY 73 11.814 -2.745 -3.626 1.00 3.00 O ATOM 229 N PHE 74 11.748 -4.897 -4.210 1.00 3.00 N ATOM 230 CA PHE 74 10.489 -5.206 -3.584 1.00 3.00 C ATOM 231 C PHE 74 10.674 -5.469 -2.114 1.00 3.00 C ATOM 232 O PHE 74 11.760 -5.912 -1.683 1.00 3.00 O ATOM 233 N ALA 75 9.625 -5.207 -1.340 1.00 3.00 N ATOM 234 CA ALA 75 9.670 -5.445 0.058 1.00 3.00 C ATOM 235 C ALA 75 8.532 -6.379 0.504 1.00 3.00 C ATOM 236 O ALA 75 7.373 -6.017 0.481 1.00 3.00 O ATOM 237 N PRO 76 8.882 -7.583 0.935 1.00 3.00 N ATOM 238 CA PRO 76 7.884 -8.504 1.534 1.00 3.00 C ATOM 239 C PRO 76 7.353 -7.920 2.840 1.00 3.00 C ATOM 240 O PRO 76 8.117 -7.405 3.667 1.00 3.00 O ATOM 241 N LEU 77 6.057 -7.986 3.028 1.00 3.00 N ATOM 242 CA LEU 77 5.493 -7.329 4.171 1.00 3.00 C ATOM 243 C LEU 77 4.358 -8.169 4.761 1.00 3.00 C ATOM 244 O LEU 77 3.426 -8.575 4.044 1.00 3.00 O ATOM 245 N SER 78 4.443 -8.397 6.062 1.00 3.00 N ATOM 246 CA SER 78 3.394 -9.074 6.795 1.00 3.00 C ATOM 247 C SER 78 2.728 -8.088 7.742 1.00 3.00 C ATOM 248 O SER 78 3.392 -7.331 8.450 1.00 3.00 O ATOM 249 N VAL 79 1.408 -8.097 7.732 1.00 3.00 N ATOM 250 CA VAL 79 0.618 -7.298 8.658 1.00 3.00 C ATOM 251 C VAL 79 -0.204 -8.120 9.664 1.00 3.00 C ATOM 252 O VAL 79 -1.091 -8.880 9.269 1.00 3.00 O ATOM 253 N ARG 80 0.079 -7.919 10.951 1.00 3.00 N ATOM 254 CA ARG 80 -0.649 -8.568 12.049 1.00 3.00 C ATOM 255 C ARG 80 -1.676 -7.695 12.761 1.00 3.00 C ATOM 256 O ARG 80 -1.354 -6.707 13.430 1.00 3.00 O ATOM 257 N PHE 81 -2.921 -8.129 12.600 1.00 3.00 N ATOM 258 CA PHE 81 -4.093 -7.573 13.274 1.00 3.00 C ATOM 259 C PHE 81 -4.352 -8.146 14.671 1.00 3.00 C ATOM 260 O PHE 81 -4.409 -9.355 14.830 1.00 3.00 O ATOM 261 N LYS 82 -4.482 -7.277 15.674 1.00 3.00 N ATOM 262 CA LYS 82 -5.027 -7.645 16.982 1.00 3.00 C ATOM 263 C LYS 82 -6.384 -7.017 17.043 1.00 3.00 C ATOM 264 O LYS 82 -6.595 -5.986 16.436 1.00 3.00 O ATOM 265 N ASP 83 -7.292 -7.620 17.805 1.00 3.00 N ATOM 266 CA ASP 83 -8.560 -6.999 18.193 1.00 3.00 C ATOM 267 C ASP 83 -9.389 -6.512 17.056 1.00 3.00 C ATOM 268 O ASP 83 -10.079 -5.521 17.182 1.00 3.00 O ATOM 269 N PHE 84 -9.337 -7.214 15.943 1.00 3.00 N ATOM 270 CA PHE 84 -10.207 -6.876 14.831 1.00 3.00 C ATOM 271 C PHE 84 -10.694 -8.147 14.156 1.00 3.00 C ATOM 272 O PHE 84 -9.883 -8.982 13.749 1.00 3.00 O ATOM 273 N SER 85 -12.007 -8.293 14.022 1.00 3.00 N ATOM 274 CA SER 85 -12.556 -9.473 13.322 1.00 3.00 C ATOM 275 C SER 85 -12.867 -9.122 11.889 1.00 3.00 C ATOM 276 O SER 85 -13.801 -8.351 11.589 1.00 3.00 O ATOM 277 N GLU 86 -12.080 -9.712 11.010 1.00 3.00 N ATOM 278 CA GLU 86 -12.067 -9.319 9.627 1.00 3.00 C ATOM 279 C GLU 86 -12.648 -10.443 8.756 1.00 3.00 C ATOM 280 O GLU 86 -12.558 -11.627 9.140 1.00 3.00 O ATOM 281 N ASN 87 -13.246 -10.054 7.621 1.00 3.00 N ATOM 282 CA ASN 87 -13.599 -10.951 6.540 1.00 3.00 C ATOM 283 C ASN 87 -12.408 -11.759 5.984 1.00 3.00 C ATOM 284 O ASN 87 -11.275 -11.635 6.469 1.00 3.00 O ATOM 285 N ALA 88 -12.674 -12.592 4.965 1.00 3.00 N ATOM 286 CA ALA 88 -11.642 -13.484 4.393 1.00 3.00 C ATOM 287 C ALA 88 -10.588 -12.688 3.600 1.00 3.00 C ATOM 288 O ALA 88 -9.407 -13.038 3.578 1.00 3.00 O ATOM 289 N THR 89 -11.027 -11.610 2.963 1.00 3.00 N ATOM 290 CA THR 89 -10.187 -10.899 2.017 1.00 3.00 C ATOM 291 C THR 89 -10.077 -9.416 2.381 1.00 3.00 C ATOM 292 O THR 89 -11.013 -8.824 2.945 1.00 3.00 O ATOM 293 N SER 90 -8.941 -8.823 2.037 1.00 3.00 N ATOM 294 CA SER 90 -8.739 -7.375 2.196 1.00 3.00 C ATOM 295 C SER 90 -8.612 -6.757 0.818 1.00 3.00 C ATOM 296 O SER 90 -7.900 -7.313 -0.018 1.00 3.00 O ATOM 297 N ARG 91 -9.271 -5.636 0.549 1.00 3.00 N ATOM 298 CA ARG 91 -9.014 -4.956 -0.726 1.00 3.00 C ATOM 299 C ARG 91 -7.638 -4.239 -0.788 1.00 3.00 C ATOM 300 O ARG 91 -7.180 -3.676 0.206 1.00 3.00 O ATOM 301 N LEU 92 -7.017 -4.237 -1.967 1.00 3.00 N ATOM 302 CA LEU 92 -5.740 -3.577 -2.178 1.00 3.00 C ATOM 303 C LEU 92 -5.794 -2.482 -3.247 1.00 3.00 C ATOM 304 O LEU 92 -6.192 -2.734 -4.393 1.00 3.00 O ATOM 305 N TRP 93 -5.386 -1.274 -2.851 1.00 3.00 N ATOM 306 CA TRP 93 -5.195 -0.157 -3.771 1.00 3.00 C ATOM 307 C TRP 93 -3.774 0.358 -3.605 1.00 3.00 C ATOM 308 O TRP 93 -3.246 0.337 -2.479 1.00 3.00 O ATOM 309 N MET 94 -3.180 0.814 -4.713 1.00 3.00 N ATOM 310 CA MET 94 -1.757 1.104 -4.730 1.00 3.00 C ATOM 311 C MET 94 -1.331 2.230 -5.662 1.00 3.00 C ATOM 312 O MET 94 -1.827 2.331 -6.774 1.00 3.00 O ATOM 313 N PHE 95 -0.378 3.051 -5.205 1.00 3.00 N ATOM 314 CA PHE 95 0.223 4.084 -6.058 1.00 3.00 C ATOM 315 C PHE 95 1.710 3.854 -6.174 1.00 3.00 C ATOM 316 O PHE 95 2.374 3.727 -5.147 1.00 3.00 O ATOM 317 N GLY 96 2.266 3.830 -7.374 1.00 3.00 N ATOM 318 CA GLY 96 3.747 3.776 -7.500 1.00 3.00 C ATOM 319 C GLY 96 4.136 4.906 -8.434 1.00 3.00 C ATOM 320 O GLY 96 3.248 5.730 -8.827 1.00 3.00 O ATOM 321 N ASP 97 5.423 4.925 -8.836 1.00 3.00 N ATOM 322 CA ASP 97 5.843 5.893 -9.845 1.00 3.00 C ATOM 323 C ASP 97 5.042 5.807 -11.156 1.00 3.00 C ATOM 324 O ASP 97 5.130 6.720 -11.988 1.00 3.00 O ATOM 325 N GLY 98 4.300 4.713 -11.360 1.00 3.00 N ATOM 326 CA GLY 98 3.510 4.573 -12.587 1.00 3.00 C ATOM 327 C GLY 98 2.433 5.699 -12.652 1.00 3.00 C ATOM 328 O GLY 98 1.977 6.085 -13.734 1.00 3.00 O ATOM 329 N ASN 99 2.125 6.269 -11.480 1.00 3.00 N ATOM 330 CA ASN 99 1.345 7.502 -11.368 1.00 3.00 C ATOM 331 C ASN 99 -0.117 7.257 -11.717 1.00 3.00 C ATOM 332 O ASN 99 -0.727 8.084 -12.420 1.00 3.00 O ATOM 333 N THR 100 -0.627 6.080 -11.281 1.00 3.00 N ATOM 334 CA THR 100 -2.029 5.724 -11.301 1.00 3.00 C ATOM 335 C THR 100 -2.446 4.950 -10.051 1.00 3.00 C ATOM 336 O THR 100 -1.728 4.089 -9.549 1.00 3.00 O ATOM 337 N SER 101 -3.613 5.293 -9.516 1.00 3.00 N ATOM 338 CA SER 101 -4.206 4.494 -8.449 1.00 3.00 C ATOM 339 C SER 101 -4.696 3.181 -9.068 1.00 3.00 C ATOM 340 O SER 101 -5.615 3.220 -9.881 1.00 3.00 O ATOM 341 N ASP 102 -4.073 2.055 -8.717 1.00 3.00 N ATOM 342 CA ASP 102 -4.458 0.745 -9.204 1.00 3.00 C ATOM 343 C ASP 102 -5.274 -0.029 -8.134 1.00 3.00 C ATOM 344 O ASP 102 -4.890 -0.144 -6.953 1.00 3.00 O ATOM 345 N SER 103 -6.408 -0.575 -8.557 1.00 3.00 N ATOM 346 CA SER 103 -7.150 -1.560 -7.759 1.00 3.00 C ATOM 347 C SER 103 -6.521 -2.911 -8.100 1.00 3.00 C ATOM 348 O SER 103 -6.746 -3.414 -9.186 1.00 3.00 O ATOM 349 N PRO 104 -5.681 -3.441 -7.207 1.00 3.00 N ATOM 350 CA PRO 104 -5.022 -4.720 -7.400 1.00 3.00 C ATOM 351 C PRO 104 -5.974 -5.827 -6.988 1.00 3.00 C ATOM 352 O PRO 104 -7.123 -5.531 -6.668 1.00 3.00 O ATOM 353 N SER 105 -5.496 -7.082 -6.944 1.00 3.00 N ATOM 354 CA SER 105 -6.344 -8.215 -6.531 1.00 3.00 C ATOM 355 C SER 105 -6.109 -7.747 -5.090 1.00 3.00 C ATOM 356 O SER 105 -5.461 -6.725 -4.852 1.00 3.00 O ATOM 357 N PRO 106 -6.634 -8.528 -4.171 1.00 3.00 N ATOM 358 CA PRO 106 -6.490 -8.256 -2.743 1.00 3.00 C ATOM 359 C PRO 106 -5.933 -9.492 -2.047 1.00 3.00 C ATOM 360 O PRO 106 -6.415 -10.616 -2.251 1.00 3.00 O ATOM 361 N LEU 107 -4.921 -9.254 -1.233 1.00 3.00 N ATOM 362 CA LEU 107 -4.247 -10.324 -0.476 1.00 3.00 C ATOM 363 C LEU 107 -4.000 -9.884 0.961 1.00 3.00 C ATOM 364 O LEU 107 -3.944 -8.670 1.258 1.00 3.00 O ATOM 365 N HIS 108 -3.872 -10.883 1.794 1.00 3.00 N ATOM 366 CA HIS 108 -3.663 -10.723 3.226 1.00 3.00 C ATOM 367 C HIS 108 -2.176 -10.524 3.550 1.00 3.00 C ATOM 368 O HIS 108 -1.815 -9.878 4.545 1.00 3.00 O ATOM 369 N THR 109 -1.343 -11.087 2.702 1.00 3.00 N ATOM 370 CA THR 109 0.106 -10.992 2.872 1.00 3.00 C ATOM 371 C THR 109 0.809 -10.746 1.530 1.00 3.00 C ATOM 372 O THR 109 0.851 -11.620 0.657 1.00 3.00 O ATOM 373 N PHE 110 1.340 -9.529 1.450 1.00 3.00 N ATOM 374 CA PHE 110 2.100 -9.036 0.295 1.00 3.00 C ATOM 375 C PHE 110 3.425 -8.449 -0.051 1.00 3.00 C ATOM 376 O PHE 110 4.298 -8.332 0.812 1.00 3.00 O ATOM 377 N PHE 111 3.576 -8.089 -1.318 1.00 3.00 N ATOM 378 CA PHE 111 4.864 -7.661 -1.796 1.00 3.00 C ATOM 379 C PHE 111 4.739 -6.219 -2.181 1.00 3.00 C ATOM 380 O PHE 111 3.881 -5.877 -2.990 1.00 3.00 O ATOM 381 N ASN 112 5.562 -5.375 -1.565 1.00 3.00 N ATOM 382 CA ASN 112 5.477 -3.934 -1.792 1.00 3.00 C ATOM 383 C ASN 112 6.592 -3.436 -2.728 1.00 3.00 C ATOM 384 O ASN 112 7.765 -3.660 -2.470 1.00 3.00 O ATOM 385 N GLU 113 6.200 -2.780 -3.835 1.00 3.00 N ATOM 386 CA GLU 113 7.179 -2.277 -4.765 1.00 3.00 C ATOM 387 C GLU 113 7.856 -1.125 -4.136 1.00 3.00 C ATOM 388 O GLU 113 7.289 -0.451 -3.271 1.00 3.00 O ATOM 389 N GLY 114 9.050 -0.840 -4.618 1.00 3.00 N ATOM 390 CA GLY 114 9.798 0.275 -4.142 1.00 3.00 C ATOM 391 C GLY 114 9.026 1.600 -4.337 1.00 3.00 C ATOM 392 O GLY 114 8.390 1.818 -5.376 1.00 3.00 O ATOM 393 N GLU 115 9.128 2.503 -3.361 1.00 3.00 N ATOM 394 CA GLU 115 8.539 3.835 -3.477 1.00 3.00 C ATOM 395 C GLU 115 7.082 3.696 -3.850 1.00 3.00 C ATOM 396 O GLU 115 6.695 4.047 -4.936 1.00 3.00 O ATOM 397 N TYR 116 6.313 3.087 -2.974 1.00 3.00 N ATOM 398 CA TYR 116 4.896 2.878 -3.241 1.00 3.00 C ATOM 399 C TYR 116 4.018 3.247 -2.054 1.00 3.00 C ATOM 400 O TYR 116 4.435 3.148 -0.895 1.00 3.00 O ATOM 401 N ILE 117 2.795 3.684 -2.338 1.00 3.00 N ATOM 402 CA ILE 117 1.807 3.906 -1.267 1.00 3.00 C ATOM 403 C ILE 117 0.723 2.862 -1.471 1.00 3.00 C ATOM 404 O ILE 117 0.167 2.776 -2.564 1.00 3.00 O ATOM 405 N VAL 118 0.439 2.061 -0.440 1.00 3.00 N ATOM 406 CA VAL 118 -0.534 0.967 -0.587 1.00 3.00 C ATOM 407 C VAL 118 -1.583 1.035 0.499 1.00 3.00 C ATOM 408 O VAL 118 -1.259 1.127 1.674 1.00 3.00 O ATOM 409 N SER 119 -2.834 0.944 0.051 1.00 3.00 N ATOM 410 CA SER 119 -3.988 0.987 0.910 1.00 3.00 C ATOM 411 C SER 119 -4.668 -0.392 1.035 1.00 3.00 C ATOM 412 O SER 119 -5.091 -1.024 0.049 1.00 3.00 O ATOM 413 N LEU 120 -4.759 -0.861 2.266 1.00 3.00 N ATOM 414 CA LEU 120 -5.484 -2.065 2.531 1.00 3.00 C ATOM 415 C LEU 120 -6.797 -1.657 3.149 1.00 3.00 C ATOM 416 O LEU 120 -6.793 -0.904 4.117 1.00 3.00 O ATOM 417 N ILE 121 -7.913 -2.110 2.554 1.00 3.00 N ATOM 418 CA ILE 121 -9.257 -1.913 3.115 1.00 3.00 C ATOM 419 C ILE 121 -9.794 -3.266 3.594 1.00 3.00 C ATOM 420 O ILE 121 -10.072 -4.170 2.802 1.00 3.00 O ATOM 421 N VAL 122 -9.892 -3.422 4.902 1.00 3.00 N ATOM 422 CA VAL 122 -10.123 -4.749 5.479 1.00 3.00 C ATOM 423 C VAL 122 -11.462 -4.720 6.177 1.00 3.00 C ATOM 424 O VAL 122 -11.544 -4.201 7.290 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 228 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 70.85 50.0 100 71.9 139 ARMSMC SECONDARY STRUCTURE . . 22.14 63.6 11 26.8 41 ARMSMC SURFACE . . . . . . . . 77.60 50.0 80 72.1 111 ARMSMC BURIED . . . . . . . . 31.81 50.0 20 71.4 28 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 61 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 56 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 20 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 49 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 27 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 9 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.31 (Number of atoms: 57) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.31 57 79.2 72 CRMSCA CRN = ALL/NP . . . . . 0.1459 CRMSCA SECONDARY STRUCTURE . . 3.86 12 54.5 22 CRMSCA SURFACE . . . . . . . . 8.71 44 75.9 58 CRMSCA BURIED . . . . . . . . 6.81 13 92.9 14 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.24 228 64.0 356 CRMSMC SECONDARY STRUCTURE . . 4.06 48 43.6 110 CRMSMC SURFACE . . . . . . . . 8.50 176 61.5 286 CRMSMC BURIED . . . . . . . . 7.31 52 74.3 70 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 795 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 767 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 265 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 622 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 173 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.24 228 21.1 1083 CRMSALL SECONDARY STRUCTURE . . 4.06 48 13.6 353 CRMSALL SURFACE . . . . . . . . 8.50 176 20.6 854 CRMSALL BURIED . . . . . . . . 7.31 52 22.7 229 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.717 0.384 0.193 57 79.2 72 ERRCA SECONDARY STRUCTURE . . 0.942 0.123 0.064 12 54.5 22 ERRCA SURFACE . . . . . . . . 5.123 0.406 0.203 44 75.9 58 ERRCA BURIED . . . . . . . . 3.343 0.309 0.156 13 92.9 14 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.678 0.385 0.193 228 64.0 356 ERRMC SECONDARY STRUCTURE . . 1.059 0.132 0.068 48 43.6 110 ERRMC SURFACE . . . . . . . . 4.932 0.398 0.199 176 61.5 286 ERRMC BURIED . . . . . . . . 3.817 0.339 0.171 52 74.3 70 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 795 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 767 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 265 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 622 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 173 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.678 0.385 0.193 228 21.1 1083 ERRALL SECONDARY STRUCTURE . . 1.059 0.132 0.068 48 13.6 353 ERRALL SURFACE . . . . . . . . 4.932 0.398 0.199 176 20.6 854 ERRALL BURIED . . . . . . . . 3.817 0.339 0.171 52 22.7 229 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 7 15 40 57 72 DISTCA CA (P) 0.00 0.00 9.72 20.83 55.56 72 DISTCA CA (RMS) 0.00 0.00 2.75 3.53 6.58 DISTCA ALL (N) 0 0 22 62 156 228 1083 DISTALL ALL (P) 0.00 0.00 2.03 5.72 14.40 1083 DISTALL ALL (RMS) 0.00 0.00 2.64 3.58 6.41 DISTALL END of the results output