####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 34 ( 273), selected 34 , name T0589TS436_1-D2 # Molecule2: number of CA atoms 82 ( 644), selected 34 , name T0589-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0589TS436_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 189 - 252 4.90 9.31 LCS_AVERAGE: 18.54 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 189 - 197 1.40 10.24 LCS_AVERAGE: 8.21 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 189 - 195 0.42 10.50 LONGEST_CONTINUOUS_SEGMENT: 7 190 - 196 0.93 9.55 LCS_AVERAGE: 5.63 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 34 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 189 V 189 7 9 16 5 8 10 11 12 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT L 190 L 190 7 9 16 7 8 10 11 12 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT T 191 T 191 7 9 16 7 8 10 11 12 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT G 192 G 192 7 9 16 7 8 10 11 12 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT F 193 F 193 7 9 16 7 8 10 11 12 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT F 194 F 194 7 9 16 7 8 10 11 12 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT Q 195 Q 195 7 9 16 7 8 10 11 12 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT S 196 S 196 7 9 16 1 3 8 10 11 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT L 197 L 197 4 9 16 4 4 4 8 12 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT N 198 N 198 4 7 16 4 4 4 4 5 13 15 18 18 20 20 20 22 22 22 23 24 26 26 28 LCS_GDT I 199 I 199 4 7 16 4 5 9 11 12 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT S 200 S 200 4 7 16 4 4 5 8 11 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT E 201 E 201 3 4 16 0 3 5 7 11 13 14 16 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT T 202 T 202 3 4 16 0 3 4 4 4 4 4 9 11 14 19 19 22 22 22 23 24 24 26 28 LCS_GDT D 251 D 251 3 4 16 3 3 4 4 4 6 7 8 9 10 12 12 15 16 18 22 24 26 27 29 LCS_GDT V 252 V 252 3 4 16 3 3 4 4 4 5 6 7 8 11 12 15 16 19 22 23 24 26 27 29 LCS_GDT L 253 L 253 3 4 13 3 3 4 4 4 6 7 8 9 11 12 12 15 18 21 23 24 26 27 29 LCS_GDT D 254 D 254 3 4 13 3 3 4 4 4 6 7 8 9 11 12 12 15 19 21 23 23 25 27 29 LCS_GDT K 255 K 255 3 8 15 3 3 3 8 8 8 8 8 9 11 12 12 17 20 21 23 23 24 26 29 LCS_GDT L 256 L 256 5 8 15 3 4 6 8 8 8 9 9 10 12 14 15 18 20 21 23 23 24 27 29 LCS_GDT K 257 K 257 5 8 15 3 4 7 8 8 8 8 9 10 11 12 13 13 14 14 17 19 20 22 25 LCS_GDT H 258 H 258 5 8 15 3 5 7 8 8 8 9 9 10 11 14 17 18 20 21 23 23 26 27 29 LCS_GDT L 259 L 259 5 8 15 3 5 6 8 8 8 8 9 12 13 14 17 18 20 21 23 24 26 27 29 LCS_GDT S 260 S 260 5 8 15 3 5 6 8 8 8 8 8 9 11 12 13 13 14 14 18 20 23 26 29 LCS_GDT Q 261 Q 261 5 8 15 3 5 6 8 8 8 8 8 10 13 14 17 18 20 21 23 24 26 27 29 LCS_GDT T 262 T 262 5 8 15 1 5 7 8 10 11 11 14 15 16 18 20 21 22 22 23 24 26 27 29 LCS_GDT L 263 L 263 4 6 15 1 3 7 9 11 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT P 264 P 264 4 6 15 2 3 7 10 11 12 14 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT E 265 E 265 4 6 15 3 3 10 11 12 13 14 18 18 20 20 20 22 22 22 23 24 24 26 28 LCS_GDT S 266 S 266 4 6 15 3 3 7 8 8 8 9 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT E 267 E 267 4 6 15 3 8 10 11 12 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT Q 268 Q 268 3 3 15 7 8 10 11 12 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT F 269 F 269 3 3 15 0 3 5 5 11 13 14 16 18 20 20 20 22 22 22 23 24 26 27 29 LCS_GDT N 270 N 270 3 3 10 0 3 5 5 5 6 14 14 15 15 19 20 22 22 22 23 24 24 26 27 LCS_AVERAGE LCS_A: 10.80 ( 5.63 8.21 18.54 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 8 10 11 12 13 15 18 18 20 20 20 22 22 22 23 24 26 27 29 GDT PERCENT_AT 8.54 9.76 12.20 13.41 14.63 15.85 18.29 21.95 21.95 24.39 24.39 24.39 26.83 26.83 26.83 28.05 29.27 31.71 32.93 35.37 GDT RMS_LOCAL 0.32 0.46 0.89 1.07 1.32 1.61 2.41 2.70 2.70 3.08 3.08 3.08 3.63 3.63 3.63 4.13 4.57 6.20 6.71 7.12 GDT RMS_ALL_AT 10.15 10.44 10.52 10.93 10.85 10.50 10.04 10.18 10.18 10.37 10.37 10.37 10.75 10.75 10.75 10.05 9.72 8.06 7.92 7.94 # Checking swapping # possible swapping detected: F 194 F 194 # possible swapping detected: E 201 E 201 # possible swapping detected: E 265 E 265 # possible swapping detected: F 269 F 269 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 189 V 189 1.855 0 0.602 1.019 4.822 75.000 62.653 LGA L 190 L 190 1.066 0 0.361 0.835 2.467 77.262 76.190 LGA T 191 T 191 1.126 0 0.059 0.119 2.458 83.690 77.891 LGA G 192 G 192 0.718 0 0.130 0.130 1.042 88.214 88.214 LGA F 193 F 193 1.304 0 0.445 1.463 6.498 70.000 53.290 LGA F 194 F 194 2.163 0 0.223 1.448 7.335 63.095 42.294 LGA Q 195 Q 195 1.528 0 0.565 0.948 3.495 71.071 69.524 LGA S 196 S 196 3.444 0 0.224 0.549 7.059 50.119 40.317 LGA L 197 L 197 2.885 0 0.231 1.280 9.221 61.071 40.060 LGA N 198 N 198 3.680 0 0.202 0.790 8.448 46.071 28.155 LGA I 199 I 199 1.097 0 0.270 1.419 5.016 66.190 51.964 LGA S 200 S 200 3.974 0 0.499 1.037 4.473 47.143 49.444 LGA E 201 E 201 6.199 0 0.060 1.089 14.191 21.786 10.159 LGA T 202 T 202 8.472 0 0.263 0.986 12.637 4.524 2.585 LGA D 251 D 251 14.719 0 0.158 0.613 18.748 0.000 0.000 LGA V 252 V 252 11.532 0 0.317 1.376 14.099 0.119 0.068 LGA L 253 L 253 13.311 0 0.637 0.993 17.245 0.000 0.000 LGA D 254 D 254 16.377 0 0.348 0.381 19.863 0.000 0.000 LGA K 255 K 255 16.994 0 0.391 1.300 17.357 0.000 0.000 LGA L 256 L 256 18.395 0 0.034 1.492 21.966 0.000 0.000 LGA K 257 K 257 21.743 0 0.046 1.273 32.704 0.000 0.000 LGA H 258 H 258 18.857 0 0.459 1.596 19.913 0.000 0.000 LGA L 259 L 259 15.090 0 0.115 0.631 16.194 0.000 0.000 LGA S 260 S 260 18.769 0 0.078 0.168 22.304 0.000 0.000 LGA Q 261 Q 261 15.863 0 0.526 0.987 24.955 0.000 0.000 LGA T 262 T 262 9.680 0 0.262 1.128 12.269 10.000 5.714 LGA L 263 L 263 4.396 0 0.287 1.215 10.703 31.310 18.869 LGA P 264 P 264 3.856 0 0.668 0.662 5.081 50.119 45.034 LGA E 265 E 265 3.209 0 0.615 1.212 11.073 59.167 29.471 LGA S 266 S 266 4.017 0 0.558 0.823 5.527 43.929 38.095 LGA E 267 E 267 0.884 4 0.652 0.612 2.297 81.786 45.397 LGA Q 268 Q 268 2.078 0 0.452 1.144 10.750 64.881 34.709 LGA F 269 F 269 5.609 0 0.620 1.419 12.225 25.833 11.429 LGA N 270 N 270 8.652 0 0.623 0.690 14.525 11.190 5.595 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 34 136 136 100.00 269 269 100.00 82 SUMMARY(RMSD_GDC): 7.889 7.692 9.098 14.678 11.306 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 34 82 4.0 18 2.70 18.293 16.174 0.642 LGA_LOCAL RMSD: 2.703 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.181 Number of assigned atoms: 34 Std_ASGN_ATOMS RMSD: 7.889 Standard rmsd on all 34 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.462662 * X + -0.763947 * Y + -0.449811 * Z + 64.772141 Y_new = -0.280238 * X + -0.607391 * Y + 0.743332 * Z + 38.125389 Z_new = -0.841077 * X + -0.217857 * Y + -0.495103 * Z + 189.412292 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.544606 0.999272 -2.727066 [DEG: -31.2036 57.2541 -156.2494 ] ZXZ: -2.597411 2.088750 -1.824248 [DEG: -148.8207 119.6766 -104.5217 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0589TS436_1-D2 REMARK 2: T0589-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0589TS436_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 34 82 4.0 18 2.70 16.174 7.89 REMARK ---------------------------------------------------------- MOLECULE T0589TS436_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0589 REMARK MODEL 1 REFINED REMARK PARENT 1KMM_A ATOM 2943 N VAL 189 23.021 26.997 190.319 1.00 0.47 N ATOM 2944 CA VAL 189 23.809 26.634 191.413 1.00 0.37 C ATOM 2945 C VAL 189 24.643 25.407 190.990 1.00 0.27 C ATOM 2946 O VAL 189 24.313 24.797 189.943 1.00 0.39 O ATOM 2947 CB VAL 189 22.897 26.274 192.643 1.00 0.43 C ATOM 2951 CG1 VAL 189 23.301 27.034 193.950 1.00 0.57 C ATOM 2952 CG2 VAL 189 21.344 26.245 192.432 1.00 0.57 C ATOM 2959 N LEU 190 25.586 25.001 191.795 1.00 0.36 N ATOM 2960 CA LEU 190 26.506 23.976 191.454 1.00 0.44 C ATOM 2961 C LEU 190 25.872 22.556 191.172 1.00 0.33 C ATOM 2962 O LEU 190 26.641 21.579 191.067 1.00 1.17 O ATOM 2963 CB LEU 190 27.559 23.783 192.595 1.00 0.57 C ATOM 2964 CG LEU 190 28.397 25.062 192.984 1.00 0.95 C ATOM 2965 CD1 LEU 190 29.867 24.653 193.340 1.00 0.63 C ATOM 2966 CD2 LEU 190 27.795 25.830 194.210 1.00 0.24 C ATOM 2978 N THR 191 24.573 22.456 191.017 1.00 0.96 N ATOM 2979 CA THR 191 23.895 21.276 190.640 1.00 0.92 C ATOM 2980 C THR 191 23.438 21.472 189.193 1.00 0.96 C ATOM 2981 O THR 191 23.628 20.570 188.349 1.00 1.07 O ATOM 2982 CB THR 191 22.636 21.158 191.561 1.00 0.94 C ATOM 2986 OG1 THR 191 23.079 20.884 192.975 1.00 0.57 O ATOM 2988 CG2 THR 191 21.670 20.017 191.122 1.00 0.57 C ATOM 2992 N GLY 192 22.907 22.625 188.894 1.00 0.92 N ATOM 2993 CA GLY 192 22.594 22.920 187.567 1.00 0.95 C ATOM 2994 C GLY 192 23.919 22.843 186.796 1.00 0.72 C ATOM 2995 O GLY 192 24.007 21.974 185.904 1.00 0.64 O ATOM 2999 N PHE 193 24.939 23.554 187.217 1.00 0.65 N ATOM 3000 CA PHE 193 26.238 23.303 186.691 1.00 0.41 C ATOM 3001 C PHE 193 26.803 21.901 187.191 1.00 0.66 C ATOM 3002 O PHE 193 27.973 21.812 187.622 1.00 2.35 O ATOM 3003 CB PHE 193 27.401 24.353 186.990 1.00 0.59 C ATOM 3004 CG PHE 193 27.347 25.743 187.612 1.00 1.51 C ATOM 3005 CZ PHE 193 27.654 27.976 189.284 1.00 1.00 C ATOM 3010 CD1 PHE 193 26.216 26.368 188.152 1.00 0.57 C ATOM 3011 CD2 PHE 193 28.614 26.342 187.808 1.00 0.57 C ATOM 3012 CE1 PHE 193 26.384 27.454 189.021 1.00 0.57 C ATOM 3013 CE2 PHE 193 28.768 27.451 188.638 1.00 0.57 C ATOM 3019 N PHE 194 26.058 20.849 187.091 1.00 0.83 N ATOM 3020 CA PHE 194 26.652 19.577 187.075 1.00 0.84 C ATOM 3021 C PHE 194 25.722 18.665 186.205 1.00 1.01 C ATOM 3022 O PHE 194 26.021 17.465 186.129 1.00 0.89 O ATOM 3023 CB PHE 194 26.903 19.223 188.592 1.00 0.83 C ATOM 3028 CG PHE 194 27.483 17.851 188.927 1.00 0.57 C ATOM 3029 CD1 PHE 194 26.699 16.687 188.811 1.00 0.57 C ATOM 3030 CD2 PHE 194 28.772 17.751 189.483 1.00 0.57 C ATOM 3031 CE1 PHE 194 27.208 15.445 189.210 1.00 0.57 C ATOM 3032 CE2 PHE 194 29.266 16.513 189.913 1.00 0.57 C ATOM 3033 CZ PHE 194 28.489 15.357 189.766 1.00 0.57 C ATOM 3039 N GLN 195 24.707 19.174 185.517 1.00 1.35 N ATOM 3040 CA GLN 195 23.755 18.359 184.843 1.00 1.42 C ATOM 3041 C GLN 195 23.496 18.662 183.282 1.00 1.54 C ATOM 3042 O GLN 195 22.577 19.452 183.014 1.00 2.21 O ATOM 3043 CB GLN 195 22.479 18.413 185.769 1.00 1.12 C ATOM 3044 CG GLN 195 22.689 17.526 187.045 1.00 1.14 C ATOM 3051 CD GLN 195 21.426 17.404 187.912 1.00 0.57 C ATOM 3052 OE1 GLN 195 21.025 18.362 188.526 1.00 0.57 O ATOM 3053 NE2 GLN 195 20.757 16.196 188.020 1.00 0.57 N ATOM 3056 N SER 196 24.255 18.089 182.318 1.00 2.70 N ATOM 3057 CA SER 196 23.944 17.967 180.887 1.00 2.23 C ATOM 3058 C SER 196 24.994 18.281 179.681 1.00 1.84 C ATOM 3059 O SER 196 25.218 17.306 178.898 1.00 1.93 O ATOM 3060 CB SER 196 22.550 18.490 180.431 1.00 1.51 C ATOM 3065 OG SER 196 22.226 18.035 179.031 1.00 0.57 O ATOM 3067 N LEU 197 25.609 19.498 179.513 1.00 1.51 N ATOM 3068 CA LEU 197 26.811 19.803 178.662 1.00 1.27 C ATOM 3069 C LEU 197 28.481 19.735 178.996 1.00 2.56 C ATOM 3070 O LEU 197 29.147 19.599 177.940 1.00 2.90 O ATOM 3071 CB LEU 197 26.476 21.079 177.815 1.00 1.16 C ATOM 3072 CG LEU 197 27.121 21.153 176.373 1.00 1.53 C ATOM 3073 CD1 LEU 197 26.085 21.646 175.316 1.00 1.65 C ATOM 3074 CD2 LEU 197 28.383 22.076 176.292 1.00 2.37 C ATOM 3086 CA ASN 198 30.222 18.909 180.767 1.00 0.57 C ATOM 3087 N ASN 198 29.139 19.748 180.243 1.00 0.57 N ATOM 3090 C ASN 198 30.083 17.970 182.138 1.00 0.57 C ATOM 3091 O ASN 198 30.864 18.236 183.078 1.00 0.57 O ATOM 3092 CB ASN 198 31.362 19.953 181.061 1.00 0.57 C ATOM 3095 CG ASN 198 32.784 19.369 181.189 1.00 0.57 C ATOM 3096 OD1 ASN 198 32.993 18.187 181.036 1.00 0.57 O ATOM 3097 ND2 ASN 198 33.835 20.220 181.486 1.00 0.57 N ATOM 3100 CA ILE 199 29.215 15.867 183.253 1.00 0.57 C ATOM 3101 N ILE 199 29.274 16.900 182.255 1.00 0.57 N ATOM 3104 C ILE 199 30.572 15.098 183.332 1.00 0.57 C ATOM 3105 O ILE 199 31.633 15.775 183.371 1.00 0.57 O ATOM 3106 CB ILE 199 27.899 14.921 182.994 1.00 0.57 C ATOM 3108 CG1 ILE 199 26.794 15.103 184.095 1.00 0.57 C ATOM 3111 CG2 ILE 199 27.942 13.396 182.572 1.00 0.57 C ATOM 3115 CD1 ILE 199 27.149 14.473 185.475 1.00 0.57 C ATOM 3119 CA SER 200 31.680 13.012 183.604 1.00 0.57 C ATOM 3120 N SER 200 30.550 13.789 183.448 1.00 0.57 N ATOM 3123 C SER 200 32.076 13.167 185.053 1.00 0.57 C ATOM 3124 O SER 200 32.082 12.175 185.807 1.00 0.57 O ATOM 3125 CB SER 200 31.428 11.576 183.098 1.00 0.57 C ATOM 3128 OG SER 200 30.366 10.884 183.914 1.00 0.57 O ATOM 3130 CA GLU 201 31.961 14.820 186.720 1.00 0.57 C ATOM 3131 N GLU 201 32.344 14.375 185.448 1.00 0.57 N ATOM 3134 C GLU 201 31.002 16.026 186.562 1.00 0.57 C ATOM 3135 O GLU 201 29.927 15.990 187.203 1.00 0.57 O ATOM 3136 CB GLU 201 33.244 15.201 187.515 1.00 0.57 C ATOM 3139 CG GLU 201 32.903 15.753 188.936 1.00 0.57 C ATOM 3142 CD GLU 201 34.184 16.024 189.740 1.00 0.57 C ATOM 3143 OE1 GLU 201 34.400 15.404 190.814 1.00 0.57 O ATOM 3144 OE2 GLU 201 35.019 16.872 189.328 1.00 0.57 O ATOM 3145 CA THR 202 31.378 18.338 186.446 1.00 0.57 C ATOM 3146 N THR 202 31.360 17.061 185.830 1.00 0.57 N ATOM 3149 C THR 202 30.463 19.310 185.701 1.00 0.57 C ATOM 3150 O THR 202 30.445 20.493 186.037 1.00 0.57 O ATOM 3151 CB THR 202 32.849 18.887 186.482 1.00 0.57 C ATOM 3153 OG1 THR 202 32.898 20.225 187.176 1.00 0.57 O ATOM 3155 CG2 THR 202 33.486 19.028 185.063 1.00 0.57 C ATOM 3159 CA ASP 251 25.832 28.497 179.926 1.00 0.57 C ATOM 3160 N ASP 251 24.919 28.281 178.920 1.00 0.57 N ATOM 3163 C ASP 251 25.225 28.417 181.311 1.00 0.57 C ATOM 3164 O ASP 251 25.988 28.484 182.300 1.00 0.57 O ATOM 3165 CB ASP 251 27.051 27.570 179.759 1.00 0.57 C ATOM 3168 CG ASP 251 27.787 27.813 178.421 1.00 0.57 C ATOM 3169 OD1 ASP 251 27.191 27.631 177.326 1.00 0.57 O ATOM 3170 OD2 ASP 251 28.989 28.188 178.422 1.00 0.57 O ATOM 3171 CA VAL 252 23.210 28.305 182.637 1.00 0.57 C ATOM 3172 N VAL 252 23.934 28.240 181.412 1.00 0.57 N ATOM 3175 C VAL 252 23.646 27.235 183.687 1.00 0.57 C ATOM 3176 O VAL 252 22.982 27.132 184.754 1.00 0.57 O ATOM 3177 CB VAL 252 21.683 28.103 182.249 1.00 0.57 C ATOM 3179 CG1 VAL 252 21.147 29.341 181.474 1.00 0.57 C ATOM 3180 CG2 VAL 252 20.691 27.785 183.423 1.00 0.57 C ATOM 3187 CA LEU 253 24.424 25.058 183.191 1.00 0.57 C ATOM 3188 N LEU 253 24.658 26.443 183.384 1.00 0.57 N ATOM 3191 C LEU 253 24.856 24.768 181.747 1.00 0.57 C ATOM 3192 O LEU 253 24.146 25.186 180.808 1.00 0.57 O ATOM 3193 CB LEU 253 22.941 24.547 183.427 1.00 0.57 C ATOM 3196 CG LEU 253 22.625 23.028 183.148 1.00 0.57 C ATOM 3197 CD1 LEU 253 21.386 22.588 184.000 1.00 0.57 C ATOM 3198 CD2 LEU 253 22.239 22.726 181.665 1.00 0.57 C ATOM 3206 CA ASP 254 26.244 23.327 180.441 1.00 0.57 C ATOM 3207 N ASP 254 25.953 24.081 181.597 1.00 0.57 N ATOM 3210 C ASP 254 26.071 21.837 180.889 1.00 0.57 C ATOM 3211 O ASP 254 24.890 21.467 181.064 1.00 0.57 O ATOM 3212 CB ASP 254 27.654 23.779 179.889 1.00 0.57 C ATOM 3215 CG ASP 254 27.651 24.480 178.509 1.00 0.57 C ATOM 3216 OD1 ASP 254 26.583 24.636 177.858 1.00 0.57 O ATOM 3217 OD2 ASP 254 28.737 24.899 178.030 1.00 0.57 O ATOM 3218 CA LYS 255 27.108 19.736 181.769 1.00 0.57 C ATOM 3219 N LYS 255 27.129 21.040 181.082 1.00 0.57 N ATOM 3222 C LYS 255 27.198 18.141 181.206 1.00 0.57 C ATOM 3223 O LYS 255 26.836 17.377 182.142 1.00 0.57 O ATOM 3224 CB LYS 255 26.433 20.008 183.144 1.00 0.57 C ATOM 3227 CG LYS 255 26.870 21.332 183.846 1.00 0.57 C ATOM 3230 CD LYS 255 28.385 21.515 184.207 1.00 0.57 C ATOM 3233 CE LYS 255 29.015 22.865 183.755 1.00 0.57 C ATOM 3236 NZ LYS 255 29.434 22.784 182.298 1.00 0.57 N ATOM 3240 N LEU 256 27.560 17.582 179.913 1.00 1.97 N ATOM 3241 CA LEU 256 28.617 16.729 179.310 1.00 1.81 C ATOM 3242 C LEU 256 28.020 15.886 178.173 1.00 1.75 C ATOM 3243 O LEU 256 28.634 15.875 177.087 1.00 1.74 O ATOM 3244 CB LEU 256 29.648 15.677 179.916 1.00 1.27 C ATOM 3245 CG LEU 256 30.563 14.800 178.960 1.00 1.03 C ATOM 3250 CD1 LEU 256 31.577 15.662 178.137 1.00 0.57 C ATOM 3251 CD2 LEU 256 31.377 13.771 179.810 1.00 0.57 C ATOM 3259 N LYS 257 26.968 15.147 178.392 1.00 1.64 N ATOM 3260 CA LYS 257 26.656 14.104 177.482 1.00 1.47 C ATOM 3261 C LYS 257 26.323 14.690 176.105 1.00 1.59 C ATOM 3262 O LYS 257 26.592 14.040 175.075 1.00 1.64 O ATOM 3263 CB LYS 257 25.435 13.311 178.019 1.00 1.42 C ATOM 3268 CG LYS 257 25.095 12.039 177.159 1.00 0.57 C ATOM 3271 CD LYS 257 26.237 10.964 177.128 1.00 0.57 C ATOM 3274 CE LYS 257 25.835 9.717 176.284 1.00 0.57 C ATOM 3277 NZ LYS 257 26.975 8.695 176.289 1.00 0.57 N ATOM 3281 N HIS 258 25.834 15.890 176.093 1.00 1.63 N ATOM 3282 CA HIS 258 25.962 16.711 174.957 1.00 1.72 C ATOM 3283 C HIS 258 27.468 17.009 174.663 1.00 2.05 C ATOM 3284 O HIS 258 28.216 16.013 174.558 1.00 3.25 O ATOM 3285 CB HIS 258 25.021 17.934 175.237 1.00 1.83 C ATOM 3286 CG HIS 258 23.559 17.573 174.891 1.00 3.31 C ATOM 3291 ND1 HIS 258 22.685 18.350 174.048 1.00 0.57 N ATOM 3292 CD2 HIS 258 22.850 16.464 175.294 1.00 0.57 C ATOM 3293 CE1 HIS 258 21.542 17.702 173.939 1.00 0.57 C ATOM 3294 NE2 HIS 258 21.509 16.459 174.710 1.00 0.57 N ATOM 3298 N LEU 259 27.898 18.229 174.458 1.00 1.63 N ATOM 3299 CA LEU 259 29.246 18.561 174.153 1.00 1.69 C ATOM 3300 C LEU 259 29.660 18.029 172.768 1.00 1.96 C ATOM 3301 O LEU 259 29.933 18.833 171.855 1.00 2.74 O ATOM 3302 CB LEU 259 30.288 18.166 175.256 1.00 1.23 C ATOM 3303 CG LEU 259 31.376 19.278 175.514 1.00 1.39 C ATOM 3304 CD1 LEU 259 32.310 18.889 176.705 1.00 1.66 C ATOM 3305 CD2 LEU 259 32.243 19.577 174.248 1.00 2.28 C ATOM 3317 N SER 260 29.643 16.747 172.628 1.00 1.81 N ATOM 3318 CA SER 260 29.228 16.167 171.423 1.00 3.15 C ATOM 3319 C SER 260 27.929 16.853 170.907 1.00 4.20 C ATOM 3320 O SER 260 27.992 17.464 169.819 1.00 5.38 O ATOM 3321 CB SER 260 29.040 14.640 171.686 1.00 3.20 C ATOM 3326 OG SER 260 28.869 13.916 170.378 1.00 0.57 O ATOM 3328 N GLN 261 26.840 16.786 171.647 1.00 3.95 N ATOM 3329 CA GLN 261 25.652 17.510 171.298 1.00 5.19 C ATOM 3330 C GLN 261 25.526 18.895 172.050 1.00 6.35 C ATOM 3331 O GLN 261 26.541 19.350 172.619 1.00 7.52 O ATOM 3332 CB GLN 261 24.399 16.560 171.356 1.00 4.37 C ATOM 3337 CG GLN 261 24.587 15.256 170.500 1.00 0.57 C ATOM 3340 CD GLN 261 25.421 14.147 171.181 1.00 0.57 C ATOM 3341 OE1 GLN 261 25.519 14.101 172.384 1.00 0.57 O ATOM 3342 NE2 GLN 261 26.044 13.181 170.409 1.00 0.57 N ATOM 3345 N THR 262 24.389 19.581 172.049 1.00 6.28 N ATOM 3346 CA THR 262 24.442 21.003 171.856 1.00 7.02 C ATOM 3347 C THR 262 23.942 22.074 172.915 1.00 8.88 C ATOM 3348 O THR 262 24.305 23.239 172.660 1.00 10.24 O ATOM 3349 CB THR 262 23.721 21.288 170.486 1.00 5.56 C ATOM 3353 OG1 THR 262 22.284 20.843 170.560 1.00 0.57 O ATOM 3355 CG2 THR 262 24.407 20.569 169.283 1.00 0.57 C ATOM 3359 N LEU 263 23.175 21.821 173.972 1.00 3.86 N ATOM 3360 CA LEU 263 22.401 22.883 174.585 1.00 3.64 C ATOM 3361 C LEU 263 22.481 23.061 176.152 1.00 3.61 C ATOM 3362 O LEU 263 22.432 22.061 176.872 1.00 4.08 O ATOM 3363 CB LEU 263 20.896 22.648 174.226 1.00 3.76 C ATOM 3368 CG LEU 263 20.593 22.965 172.712 1.00 0.57 C ATOM 3369 CD1 LEU 263 20.075 24.428 172.533 1.00 0.57 C ATOM 3370 CD2 LEU 263 19.578 21.944 172.112 1.00 0.57 C ATOM 3378 N PRO 264 22.502 24.300 176.722 1.00 3.09 N ATOM 3379 CA PRO 264 22.166 24.635 178.150 1.00 2.81 C ATOM 3380 C PRO 264 20.684 24.366 178.535 1.00 3.30 C ATOM 3381 O PRO 264 19.894 23.896 177.690 1.00 4.90 O ATOM 3382 CB PRO 264 22.412 26.179 178.304 1.00 2.56 C ATOM 3383 CG PRO 264 23.406 26.486 177.164 1.00 5.09 C ATOM 3389 CD PRO 264 22.998 25.513 176.037 1.00 0.57 C ATOM 3392 N GLU 265 20.320 24.745 179.733 1.00 2.64 N ATOM 3393 CA GLU 265 18.984 24.975 180.053 1.00 2.82 C ATOM 3394 C GLU 265 18.177 23.721 180.331 1.00 3.04 C ATOM 3395 O GLU 265 18.469 23.013 181.317 1.00 4.22 O ATOM 3398 CB GLU 265 18.851 26.004 181.181 1.00 0.57 C ATOM 3401 CG GLU 265 17.388 26.405 181.590 1.00 0.57 C ATOM 3404 CD GLU 265 16.628 27.128 180.458 1.00 0.57 C ATOM 3405 OE1 GLU 265 16.258 26.492 179.436 1.00 0.57 O ATOM 3406 OE2 GLU 265 16.364 28.354 180.561 1.00 0.57 O ATOM 3407 CA SER 266 16.040 22.696 179.909 1.00 0.57 C ATOM 3408 N SER 266 17.162 23.485 179.546 1.00 0.57 N ATOM 3411 C SER 266 15.385 23.117 181.258 1.00 0.57 C ATOM 3412 O SER 266 14.268 23.670 181.230 1.00 0.57 O ATOM 3413 CB SER 266 16.302 21.155 179.817 1.00 0.57 C ATOM 3416 OG SER 266 17.216 20.652 180.901 1.00 0.57 O ATOM 3418 CA GLU 267 15.507 23.175 183.643 1.00 0.57 C ATOM 3419 N GLU 267 16.037 22.884 182.362 1.00 0.57 N ATOM 3422 C GLU 267 16.699 23.220 184.621 1.00 0.57 C ATOM 3423 O GLU 267 17.511 22.273 184.615 1.00 0.57 O ATOM 3424 CB GLU 267 14.535 22.061 184.177 1.00 0.57 C ATOM 3427 CG GLU 267 13.104 22.092 183.551 1.00 0.57 C ATOM 3430 CD GLU 267 12.121 21.134 184.262 1.00 0.57 C ATOM 3431 OE1 GLU 267 12.505 20.406 185.216 1.00 0.57 O ATOM 3432 OE2 GLU 267 10.922 21.083 183.882 1.00 0.57 O ATOM 3433 CA GLN 268 17.690 24.219 186.533 1.00 0.57 C ATOM 3434 N GLN 268 16.782 24.230 185.445 1.00 0.57 N ATOM 3437 C GLN 268 17.189 23.207 187.607 1.00 0.57 C ATOM 3438 O GLN 268 16.746 22.109 187.216 1.00 0.57 O ATOM 3439 CB GLN 268 17.824 25.665 187.123 1.00 0.57 C ATOM 3442 CG GLN 268 18.208 26.734 186.051 1.00 0.57 C ATOM 3445 CD GLN 268 18.211 28.168 186.617 1.00 0.57 C ATOM 3446 OE1 GLN 268 18.000 28.374 187.789 1.00 0.57 O ATOM 3447 NE2 GLN 268 18.442 29.233 185.768 1.00 0.57 N ATOM 3450 CA PHE 269 16.946 22.620 189.911 1.00 0.57 C ATOM 3451 N PHE 269 17.245 23.533 188.872 1.00 0.57 N ATOM 3454 C PHE 269 16.915 23.475 191.192 1.00 0.57 C ATOM 3455 O PHE 269 17.943 24.115 191.487 1.00 0.57 O ATOM 3456 CB PHE 269 18.042 21.501 190.083 1.00 0.57 C ATOM 3459 CG PHE 269 17.969 20.435 188.998 1.00 0.57 C ATOM 3460 CD1 PHE 269 16.879 19.550 188.952 1.00 0.57 C ATOM 3461 CD2 PHE 269 18.960 20.359 188.003 1.00 0.57 C ATOM 3462 CE1 PHE 269 16.777 18.605 187.922 1.00 0.57 C ATOM 3463 CE2 PHE 269 18.849 19.422 186.966 1.00 0.57 C ATOM 3464 CZ PHE 269 17.762 18.542 186.930 1.00 0.57 C ATOM 3470 CA ASN 270 15.668 24.298 193.075 1.00 0.57 C ATOM 3471 N ASN 270 15.818 23.495 191.909 1.00 0.57 N ATOM 3474 C ASN 270 15.604 25.809 192.713 1.00 0.57 C ATOM 3475 O ASN 270 16.402 26.206 191.841 1.00 0.57 O ATOM 3476 CB ASN 270 16.815 24.075 194.130 1.00 0.57 C ATOM 3479 CG ASN 270 17.253 22.612 194.361 1.00 0.57 C ATOM 3480 OD1 ASN 270 16.651 21.692 193.858 1.00 0.57 O ATOM 3481 ND2 ASN 270 18.359 22.358 195.154 1.00 0.57 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 269 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.70 29.7 64 39.5 162 ARMSMC SECONDARY STRUCTURE . . 78.18 35.0 40 34.5 116 ARMSMC SURFACE . . . . . . . . 96.02 25.0 44 37.9 116 ARMSMC BURIED . . . . . . . . 91.73 40.0 20 43.5 46 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 99.43 15.6 32 42.1 76 ARMSSC1 RELIABLE SIDE CHAINS . 99.85 16.7 30 42.3 71 ARMSSC1 SECONDARY STRUCTURE . . 100.61 20.0 20 36.4 55 ARMSSC1 SURFACE . . . . . . . . 90.85 21.7 23 42.6 54 ARMSSC1 BURIED . . . . . . . . 118.59 0.0 9 40.9 22 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.58 34.8 23 39.0 59 ARMSSC2 RELIABLE SIDE CHAINS . 70.57 35.7 14 31.1 45 ARMSSC2 SECONDARY STRUCTURE . . 86.44 42.9 14 33.3 42 ARMSSC2 SURFACE . . . . . . . . 84.24 40.0 15 36.6 41 ARMSSC2 BURIED . . . . . . . . 85.21 25.0 8 44.4 18 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 38.42 57.1 7 30.4 23 ARMSSC3 RELIABLE SIDE CHAINS . 35.18 50.0 4 23.5 17 ARMSSC3 SECONDARY STRUCTURE . . 45.43 40.0 5 26.3 19 ARMSSC3 SURFACE . . . . . . . . 38.42 57.1 7 31.8 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.54 50.0 2 22.2 9 ARMSSC4 RELIABLE SIDE CHAINS . 71.54 50.0 2 22.2 9 ARMSSC4 SECONDARY STRUCTURE . . 71.54 50.0 2 25.0 8 ARMSSC4 SURFACE . . . . . . . . 71.54 50.0 2 22.2 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.89 (Number of atoms: 34) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.89 34 41.5 82 CRMSCA CRN = ALL/NP . . . . . 0.2320 CRMSCA SECONDARY STRUCTURE . . 8.10 21 36.2 58 CRMSCA SURFACE . . . . . . . . 8.29 24 40.7 59 CRMSCA BURIED . . . . . . . . 6.82 10 43.5 23 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.99 169 41.6 406 CRMSMC SECONDARY STRUCTURE . . 8.27 104 36.1 288 CRMSMC SURFACE . . . . . . . . 8.32 120 41.1 292 CRMSMC BURIED . . . . . . . . 7.14 49 43.0 114 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.40 133 42.1 316 CRMSSC RELIABLE SIDE CHAINS . 10.41 103 39.0 264 CRMSSC SECONDARY STRUCTURE . . 10.47 85 36.6 232 CRMSSC SURFACE . . . . . . . . 11.09 90 40.7 221 CRMSSC BURIED . . . . . . . . 8.80 43 45.3 95 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.14 269 41.8 644 CRMSALL SECONDARY STRUCTURE . . 9.33 169 36.4 464 CRMSALL SURFACE . . . . . . . . 9.62 186 40.7 457 CRMSALL BURIED . . . . . . . . 7.96 83 44.4 187 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.155 0.702 0.361 34 41.5 82 ERRCA SECONDARY STRUCTURE . . 6.182 0.680 0.357 21 36.2 58 ERRCA SURFACE . . . . . . . . 6.563 0.710 0.370 24 40.7 59 ERRCA BURIED . . . . . . . . 5.177 0.681 0.341 10 43.5 23 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.149 0.687 0.352 169 41.6 406 ERRMC SECONDARY STRUCTURE . . 6.284 0.670 0.348 104 36.1 288 ERRMC SURFACE . . . . . . . . 6.492 0.698 0.360 120 41.1 292 ERRMC BURIED . . . . . . . . 5.310 0.661 0.331 49 43.0 114 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.705 0.811 0.406 133 42.1 316 ERRSC RELIABLE SIDE CHAINS . 8.614 0.806 0.404 103 39.0 264 ERRSC SECONDARY STRUCTURE . . 8.529 0.796 0.399 85 36.6 232 ERRSC SURFACE . . . . . . . . 9.336 0.821 0.411 90 40.7 221 ERRSC BURIED . . . . . . . . 7.383 0.791 0.396 43 45.3 95 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.273 0.742 0.376 269 41.8 644 ERRALL SECONDARY STRUCTURE . . 7.316 0.730 0.373 169 36.4 464 ERRALL SURFACE . . . . . . . . 7.718 0.752 0.383 186 40.7 457 ERRALL BURIED . . . . . . . . 6.276 0.721 0.361 83 44.4 187 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 10 27 34 82 DISTCA CA (P) 0.00 0.00 2.44 12.20 32.93 82 DISTCA CA (RMS) 0.00 0.00 2.50 3.75 6.57 DISTCA ALL (N) 0 2 7 62 185 269 644 DISTALL ALL (P) 0.00 0.31 1.09 9.63 28.73 644 DISTALL ALL (RMS) 0.00 1.53 2.27 3.73 6.80 DISTALL END of the results output