####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 95 ( 380), selected 94 , name T0589TS328_1-D3 # Molecule2: number of CA atoms 94 ( 678), selected 94 , name T0589-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0589TS328_1-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 94 370 - 464 2.96 2.96 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 74 390 - 464 1.91 3.17 LCS_AVERAGE: 64.16 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 64 399 - 463 0.99 3.32 LONGEST_CONTINUOUS_SEGMENT: 64 400 - 464 0.99 3.31 LCS_AVERAGE: 51.21 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 94 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 370 T 370 0 5 94 0 0 3 3 6 27 33 50 54 64 86 89 92 93 94 94 94 94 94 94 LCS_GDT P 371 P 371 4 9 94 3 4 19 29 41 62 75 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT A 372 A 372 4 9 94 3 4 5 26 41 54 69 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT Q 373 Q 373 5 9 94 13 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT V 374 V 374 5 9 94 16 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT V 375 V 375 5 9 94 15 45 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT V 376 V 376 5 11 94 9 45 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT V 377 V 377 5 11 94 3 25 59 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT N 378 N 378 7 11 94 4 6 16 36 52 73 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT M 379 M 379 7 11 94 4 6 15 24 52 66 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT Q 380 Q 380 7 11 94 4 6 15 27 52 68 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT D 381 D 381 7 11 94 4 6 15 27 42 59 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT E 382 E 382 7 11 94 4 6 8 10 20 27 47 68 78 85 90 91 92 93 94 94 94 94 94 94 LCS_GDT L 383 L 383 7 11 94 5 6 15 24 36 61 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT M 384 M 384 7 11 94 5 6 8 10 28 39 55 83 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT P 385 P 385 5 11 94 5 5 5 7 16 23 32 61 79 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT T 386 T 386 5 11 94 5 5 11 20 31 42 65 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT Y 387 Y 387 5 10 94 5 9 12 22 36 49 77 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT L 388 L 388 4 7 94 3 4 8 9 11 16 18 31 51 56 71 88 92 93 94 94 94 94 94 94 LCS_GDT K 389 K 389 5 5 94 4 4 7 13 33 49 58 61 78 86 90 91 92 93 94 94 94 94 94 94 LCS_GDT V 390 V 390 5 74 94 4 4 7 9 14 20 74 79 84 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT S 391 S 391 5 74 94 4 4 5 5 5 6 9 11 28 32 34 76 83 87 94 94 94 94 94 94 LCS_GDT Q 392 Q 392 5 74 94 4 4 5 10 33 36 58 62 77 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT Q 393 Q 393 38 74 94 13 44 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT L 394 L 394 38 74 94 12 42 61 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT R 395 R 395 38 74 94 14 42 60 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT Q 396 Q 396 38 74 94 14 42 60 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT A 397 A 397 38 74 94 14 42 60 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT G 398 G 398 54 74 94 11 42 60 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT L 399 L 399 64 74 94 14 42 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT N 400 N 400 64 74 94 14 42 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT V 401 V 401 64 74 94 17 45 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT I 402 I 402 64 74 94 15 45 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT T 403 T 403 64 74 94 15 44 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT N 404 N 404 64 74 94 6 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT F 405 F 405 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT E 406 E 406 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT K 407 K 407 64 74 94 4 13 59 73 76 76 78 83 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT R 408 R 408 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT Q 409 Q 409 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT L 410 L 410 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT G 411 G 411 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT K 412 K 412 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT Q 413 Q 413 64 74 94 14 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT F 414 F 414 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT Q 415 Q 415 64 74 94 14 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT A 416 A 416 64 74 94 8 41 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT A 417 A 417 64 74 94 8 36 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT D 418 D 418 64 74 94 14 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT K 419 K 419 64 74 94 9 40 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT Q 420 Q 420 64 74 94 9 39 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT G 421 G 421 64 74 94 11 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT I 422 I 422 64 74 94 10 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT R 423 R 423 64 74 94 5 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT F 424 F 424 64 74 94 15 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT C 425 C 425 64 74 94 15 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT V 426 V 426 64 74 94 15 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT I 427 I 427 64 74 94 16 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT I 428 I 428 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT G 429 G 429 64 74 94 13 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT A 430 A 430 64 74 94 12 42 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT D 431 D 431 64 74 94 12 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT E 432 E 432 64 74 94 8 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT A 433 A 433 64 74 94 11 39 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT A 434 A 434 64 74 94 9 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT A 435 A 435 64 74 94 5 30 63 73 76 76 78 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT Q 436 Q 436 64 74 94 11 30 59 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT K 437 K 437 64 74 94 11 43 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT S 438 S 438 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT S 439 S 439 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT L 440 L 440 64 74 94 15 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT K 441 K 441 64 74 94 13 38 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT D 442 D 442 64 74 94 15 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT L 443 L 443 64 74 94 9 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT Q 444 Q 444 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT S 445 S 445 64 74 94 17 45 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT G 446 G 446 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT E 447 E 447 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT Q 448 Q 448 64 74 94 15 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT V 449 V 449 64 74 94 14 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT E 450 E 450 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT V 451 V 451 64 74 94 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT A 452 A 452 64 74 94 3 40 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT A 454 A 454 64 74 94 9 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT D 455 D 455 64 74 94 15 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT L 456 L 456 64 74 94 10 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT A 457 A 457 64 74 94 10 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT E 458 E 458 64 74 94 10 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT E 459 E 459 64 74 94 10 45 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT I 460 I 460 64 74 94 10 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT K 461 K 461 64 74 94 10 25 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT R 462 R 462 64 74 94 10 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT R 463 R 463 64 74 94 6 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_GDT L 464 L 464 64 74 94 9 33 62 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 LCS_AVERAGE LCS_A: 71.79 ( 51.21 64.16 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 17 46 64 73 76 76 79 84 86 87 90 91 92 93 94 94 94 94 94 94 GDT PERCENT_AT 18.09 48.94 68.09 77.66 80.85 80.85 84.04 89.36 91.49 92.55 95.74 96.81 97.87 98.94 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.37 0.73 0.91 1.08 1.15 1.15 1.66 2.03 2.10 2.16 2.42 2.53 2.66 2.81 2.96 2.96 2.96 2.96 2.96 2.96 GDT RMS_ALL_AT 3.30 3.35 3.31 3.25 3.23 3.23 3.10 3.02 3.02 3.01 2.98 2.97 2.97 2.96 2.96 2.96 2.96 2.96 2.96 2.96 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 370 T 370 9.564 3 0.562 0.562 9.564 2.738 1.565 LGA P 371 P 371 5.275 3 0.658 0.658 6.412 32.619 18.639 LGA A 372 A 372 5.505 1 0.050 0.050 5.908 34.048 27.238 LGA Q 373 Q 373 0.965 5 0.642 0.642 1.857 86.071 38.254 LGA V 374 V 374 0.451 3 0.050 0.050 0.544 97.619 55.782 LGA V 375 V 375 0.984 3 0.082 0.082 0.990 90.476 51.701 LGA V 376 V 376 1.240 3 0.261 0.261 1.906 81.548 46.599 LGA V 377 V 377 1.645 3 0.093 0.093 2.116 72.976 41.701 LGA N 378 N 378 3.740 4 0.236 0.236 3.740 46.786 23.393 LGA M 379 M 379 3.898 4 0.083 0.083 4.632 38.810 19.405 LGA Q 380 Q 380 4.454 5 0.226 0.226 4.454 38.690 17.196 LGA D 381 D 381 4.942 4 0.192 0.192 6.299 26.786 13.393 LGA E 382 E 382 7.476 5 0.150 0.150 7.645 10.952 4.868 LGA L 383 L 383 4.961 4 0.236 0.236 5.531 28.929 14.464 LGA M 384 M 384 5.084 4 0.095 0.095 5.084 27.500 13.750 LGA P 385 P 385 5.821 3 0.093 0.093 5.821 23.810 13.605 LGA T 386 T 386 5.096 3 0.029 0.029 5.128 28.810 16.463 LGA Y 387 Y 387 5.306 8 0.371 0.371 5.306 31.786 10.595 LGA L 388 L 388 8.782 4 0.090 0.090 9.316 4.762 2.381 LGA K 389 K 389 6.826 5 0.641 0.641 7.287 24.524 10.899 LGA V 390 V 390 5.136 3 0.036 0.036 7.136 20.238 11.565 LGA S 391 S 391 9.830 2 0.289 0.289 9.830 2.381 1.587 LGA Q 392 Q 392 7.089 5 0.615 0.615 7.573 17.500 7.778 LGA Q 393 Q 393 0.738 5 0.594 0.594 2.396 84.048 37.354 LGA L 394 L 394 1.339 4 0.625 0.625 3.702 72.024 36.012 LGA R 395 R 395 1.634 7 0.253 0.253 1.973 72.857 26.494 LGA Q 396 Q 396 2.110 5 0.077 0.077 2.110 66.786 29.683 LGA A 397 A 397 2.093 1 0.125 0.125 2.172 68.810 55.048 LGA G 398 G 398 1.908 0 0.047 0.047 1.986 72.857 72.857 LGA L 399 L 399 1.606 4 0.026 0.026 1.768 72.857 36.429 LGA N 400 N 400 1.509 4 0.050 0.050 1.519 77.143 38.571 LGA V 401 V 401 1.019 3 0.009 0.009 1.386 81.429 46.531 LGA I 402 I 402 1.311 4 0.000 0.000 1.429 81.429 40.714 LGA T 403 T 403 1.663 3 0.081 0.081 1.943 72.857 41.633 LGA N 404 N 404 1.656 4 0.048 0.048 1.656 79.405 39.702 LGA F 405 F 405 1.441 7 0.335 0.335 2.591 71.071 25.844 LGA E 406 E 406 1.374 5 0.085 0.085 1.752 75.000 33.333 LGA K 407 K 407 2.409 5 0.101 0.101 2.550 64.881 28.836 LGA R 408 R 408 1.326 7 0.086 0.086 1.699 79.286 28.831 LGA Q 409 Q 409 1.344 5 0.052 0.052 1.344 83.690 37.196 LGA L 410 L 410 1.272 4 0.062 0.062 1.383 81.429 40.714 LGA G 411 G 411 1.128 0 0.074 0.074 1.231 81.429 81.429 LGA K 412 K 412 0.734 5 0.024 0.024 0.851 90.476 40.212 LGA Q 413 Q 413 0.928 5 0.015 0.015 0.928 90.476 40.212 LGA F 414 F 414 0.714 7 0.083 0.083 0.845 90.476 32.900 LGA Q 415 Q 415 0.666 5 0.060 0.060 0.697 90.476 40.212 LGA A 416 A 416 0.872 1 0.036 0.036 1.087 88.214 70.571 LGA A 417 A 417 1.151 1 0.000 0.000 1.151 85.952 68.762 LGA D 418 D 418 0.568 4 0.063 0.063 1.278 88.214 44.107 LGA K 419 K 419 1.401 5 0.047 0.047 1.679 77.143 34.286 LGA Q 420 Q 420 1.688 5 0.072 0.072 1.894 72.857 32.381 LGA G 421 G 421 1.123 0 0.077 0.077 1.196 85.952 85.952 LGA I 422 I 422 0.652 4 0.079 0.079 1.015 90.595 45.298 LGA R 423 R 423 1.091 7 0.065 0.065 1.715 81.548 29.654 LGA F 424 F 424 0.475 7 0.106 0.106 0.594 95.238 34.632 LGA C 425 C 425 0.581 2 0.057 0.057 0.581 92.857 61.905 LGA V 426 V 426 0.637 3 0.000 0.000 0.651 90.476 51.701 LGA I 427 I 427 0.874 4 0.037 0.037 0.983 90.476 45.238 LGA I 428 I 428 1.251 4 0.058 0.058 2.127 77.262 38.631 LGA G 429 G 429 1.114 0 0.276 0.276 2.205 79.524 79.524 LGA A 430 A 430 0.607 1 0.165 0.165 1.006 92.976 74.381 LGA D 431 D 431 1.699 4 0.149 0.149 1.917 75.000 37.500 LGA E 432 E 432 1.850 5 0.019 0.019 2.324 70.833 31.481 LGA A 433 A 433 1.816 1 0.045 0.045 2.371 68.810 55.048 LGA A 434 A 434 2.184 1 0.081 0.081 3.076 61.190 48.952 LGA A 435 A 435 2.804 1 0.078 0.078 2.804 59.048 47.238 LGA Q 436 Q 436 2.581 5 0.173 0.173 2.620 62.976 27.989 LGA K 437 K 437 1.778 5 0.037 0.037 2.333 70.833 31.481 LGA S 438 S 438 0.797 2 0.078 0.078 1.096 88.214 58.810 LGA S 439 S 439 0.632 2 0.060 0.060 0.655 95.238 63.492 LGA L 440 L 440 0.262 4 0.044 0.044 0.624 95.238 47.619 LGA K 441 K 441 1.114 5 0.139 0.139 1.114 83.690 37.196 LGA D 442 D 442 0.804 4 0.047 0.047 0.902 90.476 45.238 LGA L 443 L 443 0.942 4 0.057 0.057 0.942 90.476 45.238 LGA Q 444 Q 444 0.401 5 0.046 0.046 0.728 95.238 42.328 LGA S 445 S 445 0.666 2 0.130 0.130 1.287 90.595 60.397 LGA G 446 G 446 0.117 0 0.132 0.132 0.627 97.619 97.619 LGA E 447 E 447 0.432 5 0.078 0.078 0.511 95.238 42.328 LGA Q 448 Q 448 0.740 5 0.032 0.032 0.740 95.238 42.328 LGA V 449 V 449 0.357 3 0.066 0.066 0.413 100.000 57.143 LGA E 450 E 450 0.480 5 0.202 0.202 0.860 97.619 43.386 LGA V 451 V 451 0.608 3 0.056 0.056 1.549 86.071 49.184 LGA A 452 A 452 1.232 1 0.671 0.671 1.954 81.548 65.238 LGA A 454 A 454 1.415 1 0.072 0.072 1.507 79.286 63.429 LGA D 455 D 455 1.247 4 0.100 0.100 1.409 81.429 40.714 LGA L 456 L 456 1.481 4 0.000 0.000 1.683 77.143 38.571 LGA A 457 A 457 1.807 1 0.156 0.156 1.807 72.857 58.286 LGA E 458 E 458 1.962 5 0.049 0.049 1.962 72.857 32.381 LGA E 459 E 459 1.887 5 0.190 0.190 2.070 70.833 31.481 LGA I 460 I 460 1.370 4 0.040 0.040 1.844 75.000 37.500 LGA K 461 K 461 2.328 5 0.026 0.026 2.677 64.881 28.836 LGA R 462 R 462 1.993 7 0.043 0.043 2.078 68.810 25.022 LGA R 463 R 463 1.945 7 0.575 0.575 3.711 65.476 23.810 LGA L 464 L 464 0.896 4 0.561 0.561 3.602 74.643 37.321 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 94 376 376 100.00 678 376 55.46 94 SUMMARY(RMSD_GDC): 2.956 2.872 2.872 70.375 39.204 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 95 94 4.0 84 2.03 78.989 78.045 3.940 LGA_LOCAL RMSD: 2.032 Number of atoms: 84 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.019 Number of assigned atoms: 94 Std_ASGN_ATOMS RMSD: 2.956 Standard rmsd on all 94 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.385687 * X + 0.015411 * Y + 0.922501 * Z + -42.855694 Y_new = 0.904670 * X + 0.190007 * Y + -0.381406 * Z + 31.794222 Z_new = -0.181160 * X + 0.981662 * Y + 0.059341 * Z + 171.822739 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.167801 0.182165 1.510420 [DEG: 66.9100 10.4373 86.5407 ] ZXZ: 1.178751 1.511420 -0.182491 [DEG: 67.5375 86.5980 -10.4559 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0589TS328_1-D3 REMARK 2: T0589-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0589TS328_1-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 95 94 4.0 84 2.03 78.045 2.96 REMARK ---------------------------------------------------------- MOLECULE T0589TS328_1-D3 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0589 REMARK MODEL 1 REMARK PARENT 1wu7_A ATOM 1397 N THR 370 23.442 41.441 231.374 1.00 3.00 N ATOM 1398 CA THR 370 21.994 41.611 231.453 1.00 3.00 C ATOM 1399 C THR 370 21.557 42.767 232.346 1.00 3.00 C ATOM 1400 O THR 370 20.845 43.666 231.893 1.00 3.00 O ATOM 1401 N PRO 371 21.992 42.751 233.603 1.00 3.00 N ATOM 1402 CA PRO 371 21.582 43.782 234.551 1.00 3.00 C ATOM 1403 C PRO 371 22.679 44.663 235.145 1.00 3.00 C ATOM 1404 O PRO 371 23.867 44.365 235.041 1.00 3.00 O ATOM 1405 N ALA 372 22.254 45.757 235.771 1.00 3.00 N ATOM 1406 CA ALA 372 23.167 46.675 236.441 1.00 3.00 C ATOM 1407 C ALA 372 23.389 46.100 237.836 1.00 3.00 C ATOM 1408 O ALA 372 22.463 45.578 238.455 1.00 3.00 O ATOM 1409 N GLN 373 24.620 46.208 238.319 1.00 3.00 N ATOM 1410 CA GLN 373 25.017 45.669 239.614 1.00 3.00 C ATOM 1411 C GLN 373 25.229 46.769 240.664 1.00 3.00 C ATOM 1412 O GLN 373 25.825 47.812 240.385 1.00 3.00 O ATOM 1413 N VAL 374 24.750 46.521 241.879 1.00 3.00 N ATOM 1414 CA VAL 374 24.869 47.499 242.961 1.00 3.00 C ATOM 1415 C VAL 374 25.403 46.873 244.237 1.00 3.00 C ATOM 1416 O VAL 374 24.914 45.829 244.674 1.00 3.00 O ATOM 1417 N VAL 375 26.399 47.522 244.837 1.00 3.00 N ATOM 1418 CA VAL 375 26.986 47.050 246.084 1.00 3.00 C ATOM 1419 C VAL 375 26.565 48.023 247.195 1.00 3.00 C ATOM 1420 O VAL 375 26.595 49.238 247.009 1.00 3.00 O ATOM 1421 N VAL 376 26.148 47.487 248.339 1.00 3.00 N ATOM 1422 CA VAL 376 25.705 48.307 249.476 1.00 3.00 C ATOM 1423 C VAL 376 26.427 48.125 250.822 1.00 3.00 C ATOM 1424 O VAL 376 27.314 47.274 250.935 1.00 3.00 O ATOM 1425 N VAL 377 26.061 48.926 251.805 1.00 3.00 N ATOM 1426 CA VAL 377 26.647 48.837 253.132 1.00 3.00 C ATOM 1427 C VAL 377 25.684 49.473 254.128 1.00 3.00 C ATOM 1428 O VAL 377 24.616 49.956 253.736 1.00 3.00 O ATOM 1429 N ASN 378 26.041 49.439 255.409 1.00 3.00 N ATOM 1430 CA ASN 378 25.172 50.034 256.413 1.00 3.00 C ATOM 1431 C ASN 378 25.658 49.803 257.829 1.00 3.00 C ATOM 1432 O ASN 378 26.501 48.933 258.072 1.00 3.00 O ATOM 1433 N MET 379 25.108 50.568 258.760 1.00 3.00 N ATOM 1434 CA MET 379 25.484 50.484 260.162 1.00 3.00 C ATOM 1435 C MET 379 24.834 49.284 260.854 1.00 3.00 C ATOM 1436 O MET 379 25.466 48.618 261.662 1.00 3.00 O ATOM 1437 N GLN 380 23.571 49.019 260.543 1.00 3.00 N ATOM 1438 CA GLN 380 22.880 47.902 261.157 1.00 3.00 C ATOM 1439 C GLN 380 22.052 47.098 260.180 1.00 3.00 C ATOM 1440 O GLN 380 20.845 47.301 260.045 1.00 3.00 O ATOM 1441 N ASP 381 22.724 46.210 259.461 1.00 3.00 N ATOM 1442 CA ASP 381 22.070 45.342 258.493 1.00 3.00 C ATOM 1443 C ASP 381 20.680 45.352 257.856 1.00 3.00 C ATOM 1444 O ASP 381 20.564 45.323 256.629 1.00 3.00 O ATOM 1445 N GLU 382 19.635 45.415 258.679 1.00 3.00 N ATOM 1446 CA GLU 382 18.265 45.416 258.177 1.00 3.00 C ATOM 1447 C GLU 382 17.943 46.573 257.229 1.00 3.00 C ATOM 1448 O GLU 382 17.240 46.381 256.240 1.00 3.00 O ATOM 1449 N LEU 383 18.444 47.772 257.515 1.00 3.00 N ATOM 1450 CA LEU 383 18.169 48.903 256.629 1.00 3.00 C ATOM 1451 C LEU 383 18.783 48.645 255.250 1.00 3.00 C ATOM 1452 O LEU 383 18.226 49.045 254.227 1.00 3.00 O ATOM 1453 N MET 384 19.924 47.962 255.225 1.00 3.00 N ATOM 1454 CA MET 384 20.592 47.652 253.959 1.00 3.00 C ATOM 1455 C MET 384 19.810 46.562 253.224 1.00 3.00 C ATOM 1456 O MET 384 19.657 46.616 252.008 1.00 3.00 O ATOM 1457 N PRO 385 19.303 45.580 253.963 1.00 3.00 N ATOM 1458 CA PRO 385 18.522 44.517 253.342 1.00 3.00 C ATOM 1459 C PRO 385 17.255 45.121 252.723 1.00 3.00 C ATOM 1460 O PRO 385 16.907 44.814 251.575 1.00 3.00 O ATOM 1461 N THR 386 16.583 45.988 253.476 1.00 3.00 N ATOM 1462 CA THR 386 15.367 46.644 252.999 1.00 3.00 C ATOM 1463 C THR 386 15.547 47.299 251.630 1.00 3.00 C ATOM 1464 O THR 386 14.715 47.128 250.732 1.00 3.00 O ATOM 1465 N TYR 387 16.626 48.057 251.473 1.00 3.00 N ATOM 1466 CA TYR 387 16.875 48.729 250.204 1.00 3.00 C ATOM 1467 C TYR 387 17.724 49.956 249.932 1.00 3.00 C ATOM 1468 O TYR 387 18.778 50.133 250.547 1.00 3.00 O ATOM 1469 N LEU 388 17.288 50.786 248.986 1.00 3.00 N ATOM 1470 CA LEU 388 17.986 52.016 248.659 1.00 3.00 C ATOM 1471 C LEU 388 17.548 53.014 249.725 1.00 3.00 C ATOM 1472 O LEU 388 18.286 53.930 250.093 1.00 3.00 O ATOM 1473 N LYS 389 16.336 52.797 250.201 1.00 3.00 N ATOM 1474 CA LYS 389 15.722 53.576 251.272 1.00 3.00 C ATOM 1475 C LYS 389 14.834 52.572 251.983 1.00 3.00 C ATOM 1476 O LYS 389 14.516 51.518 251.419 1.00 3.00 O ATOM 1477 N VAL 390 14.418 52.870 253.222 1.00 9.00 N ATOM 1478 CA VAL 390 13.564 51.919 253.917 1.00 9.00 C ATOM 1479 C VAL 390 12.323 51.527 253.107 1.00 9.00 C ATOM 1480 O VAL 390 11.885 50.375 253.165 1.00 9.00 O ATOM 1481 N SER 391 11.779 52.474 252.346 1.00 9.00 N ATOM 1482 CA SER 391 10.602 52.185 251.546 1.00 9.00 C ATOM 1483 C SER 391 10.835 51.912 250.051 1.00 9.00 C ATOM 1484 O SER 391 9.892 51.643 249.305 1.00 9.00 O ATOM 1485 N GLN 392 12.094 51.952 249.627 1.00 9.00 N ATOM 1486 CA GLN 392 12.442 51.701 248.229 1.00 9.00 C ATOM 1487 C GLN 392 13.489 50.596 248.109 1.00 9.00 C ATOM 1488 O GLN 392 14.620 50.773 248.550 1.00 9.00 O ATOM 1489 N GLN 393 13.091 49.475 247.510 1.00 3.00 N ATOM 1490 CA GLN 393 13.962 48.307 247.327 1.00 3.00 C ATOM 1491 C GLN 393 14.290 48.085 245.856 1.00 3.00 C ATOM 1492 O GLN 393 13.395 48.120 244.998 1.00 3.00 O ATOM 1493 N LEU 394 15.564 47.831 245.579 1.00 3.00 N ATOM 1494 CA LEU 394 16.034 47.554 244.230 1.00 3.00 C ATOM 1495 C LEU 394 16.403 46.060 244.237 1.00 3.00 C ATOM 1496 O LEU 394 17.186 45.625 245.068 1.00 3.00 O ATOM 1497 N ARG 395 15.834 45.293 243.311 1.00 3.00 N ATOM 1498 CA ARG 395 16.091 43.862 243.262 1.00 3.00 C ATOM 1499 C ARG 395 14.718 43.747 242.625 1.00 3.00 C ATOM 1500 O ARG 395 14.574 43.215 241.523 1.00 3.00 O ATOM 1501 N GLN 396 13.703 44.238 243.323 1.00 3.00 N ATOM 1502 CA GLN 396 12.351 44.172 242.798 1.00 3.00 C ATOM 1503 C GLN 396 12.203 45.129 241.625 1.00 3.00 C ATOM 1504 O GLN 396 11.218 45.066 240.892 1.00 3.00 O ATOM 1505 N ALA 397 13.196 45.997 241.440 1.00 3.00 N ATOM 1506 CA ALA 397 13.184 46.949 240.333 1.00 3.00 C ATOM 1507 C ALA 397 14.175 46.550 239.238 1.00 3.00 C ATOM 1508 O ALA 397 14.682 47.400 238.511 1.00 3.00 O ATOM 1509 N GLY 398 14.466 45.256 239.142 1.00 3.00 N ATOM 1510 CA GLY 398 15.361 44.764 238.101 1.00 3.00 C ATOM 1511 C GLY 398 16.864 44.944 238.232 1.00 3.00 C ATOM 1512 O GLY 398 17.578 44.944 237.229 1.00 3.00 O ATOM 1513 N LEU 399 17.362 45.100 239.451 1.00 3.00 N ATOM 1514 CA LEU 399 18.794 45.251 239.632 1.00 3.00 C ATOM 1515 C LEU 399 19.394 44.124 240.466 1.00 3.00 C ATOM 1516 O LEU 399 18.704 43.514 241.281 1.00 3.00 O ATOM 1517 N ASN 400 20.674 43.835 240.232 1.00 3.00 N ATOM 1518 CA ASN 400 21.378 42.808 240.993 1.00 3.00 C ATOM 1519 C ASN 400 22.041 43.527 242.142 1.00 3.00 C ATOM 1520 O ASN 400 22.743 44.521 241.930 1.00 3.00 O ATOM 1521 N VAL 401 21.838 43.029 243.358 1.00 3.00 N ATOM 1522 CA VAL 401 22.409 43.707 244.503 1.00 3.00 C ATOM 1523 C VAL 401 23.236 42.837 245.438 1.00 3.00 C ATOM 1524 O VAL 401 22.806 41.765 245.843 1.00 3.00 O ATOM 1525 N ILE 402 24.426 43.329 245.779 1.00 3.00 N ATOM 1526 CA ILE 402 25.319 42.630 246.692 1.00 3.00 C ATOM 1527 C ILE 402 25.508 43.480 247.953 1.00 3.00 C ATOM 1528 O ILE 402 26.032 44.588 247.881 1.00 3.00 O ATOM 1529 N THR 403 25.099 42.955 249.100 1.00 3.00 N ATOM 1530 CA THR 403 25.235 43.678 250.360 1.00 3.00 C ATOM 1531 C THR 403 26.498 43.222 251.102 1.00 3.00 C ATOM 1532 O THR 403 26.823 42.036 251.102 1.00 3.00 O ATOM 1533 N ASN 404 27.214 44.156 251.721 1.00 3.00 N ATOM 1534 CA ASN 404 28.413 43.810 252.491 1.00 3.00 C ATOM 1535 C ASN 404 27.952 43.131 253.776 1.00 3.00 C ATOM 1536 O ASN 404 27.098 43.660 254.493 1.00 3.00 O ATOM 1537 N PHE 405 28.506 41.961 254.063 1.00 3.00 N ATOM 1538 CA PHE 405 28.138 41.209 255.255 1.00 3.00 C ATOM 1539 C PHE 405 29.349 40.907 256.123 1.00 3.00 C ATOM 1540 O PHE 405 29.260 40.173 257.103 1.00 3.00 O ATOM 1541 N GLU 406 30.492 41.469 255.761 1.00 3.00 N ATOM 1542 CA GLU 406 31.692 41.246 256.542 1.00 3.00 C ATOM 1543 C GLU 406 32.222 42.539 257.122 1.00 3.00 C ATOM 1544 O GLU 406 32.007 43.611 256.555 1.00 3.00 O ATOM 1545 N LYS 407 32.896 42.431 258.266 1.00 3.00 N ATOM 1546 CA LYS 407 33.470 43.590 258.940 1.00 3.00 C ATOM 1547 C LYS 407 34.768 43.977 258.263 1.00 3.00 C ATOM 1548 O LYS 407 35.704 43.178 258.180 1.00 3.00 O ATOM 1549 N ARG 408 34.824 45.214 257.787 1.00 3.00 N ATOM 1550 CA ARG 408 35.997 45.703 257.079 1.00 3.00 C ATOM 1551 C ARG 408 35.864 47.193 256.826 1.00 3.00 C ATOM 1552 O ARG 408 34.753 47.715 256.738 1.00 3.00 O ATOM 1553 N GLN 409 37.002 47.867 256.696 1.00 3.00 N ATOM 1554 CA GLN 409 36.999 49.294 256.442 1.00 3.00 C ATOM 1555 C GLN 409 36.440 49.649 255.081 1.00 3.00 C ATOM 1556 O GLN 409 36.269 48.783 254.225 1.00 3.00 O ATOM 1557 N LEU 410 36.173 50.935 254.876 1.00 3.00 N ATOM 1558 CA LEU 410 35.600 51.430 253.630 1.00 3.00 C ATOM 1559 C LEU 410 36.449 51.129 252.392 1.00 3.00 C ATOM 1560 O LEU 410 35.924 50.681 251.370 1.00 3.00 O ATOM 1561 N GLY 411 37.752 51.381 252.480 1.00 3.00 N ATOM 1562 CA GLY 411 38.649 51.145 251.356 1.00 3.00 C ATOM 1563 C GLY 411 38.596 49.700 250.867 1.00 3.00 C ATOM 1564 O GLY 411 38.596 49.445 249.663 1.00 3.00 O ATOM 1565 N LYS 412 38.550 48.760 251.802 1.00 3.00 N ATOM 1566 CA LYS 412 38.495 47.347 251.450 1.00 3.00 C ATOM 1567 C LYS 412 37.139 47.017 250.819 1.00 3.00 C ATOM 1568 O LYS 412 37.045 46.182 249.914 1.00 3.00 O ATOM 1569 N GLN 413 36.092 47.686 251.294 1.00 3.00 N ATOM 1570 CA GLN 413 34.754 47.461 250.771 1.00 3.00 C ATOM 1571 C GLN 413 34.647 47.922 249.322 1.00 3.00 C ATOM 1572 O GLN 413 34.045 47.243 248.491 1.00 3.00 O ATOM 1573 N PHE 414 35.229 49.075 249.017 1.00 3.00 N ATOM 1574 CA PHE 414 35.178 49.586 247.654 1.00 3.00 C ATOM 1575 C PHE 414 36.047 48.723 246.744 1.00 3.00 C ATOM 1576 O PHE 414 35.734 48.541 245.566 1.00 3.00 O ATOM 1577 N GLN 415 37.129 48.185 247.300 1.00 3.00 N ATOM 1578 CA GLN 415 38.018 47.311 246.546 1.00 3.00 C ATOM 1579 C GLN 415 37.186 46.087 246.163 1.00 3.00 C ATOM 1580 O GLN 415 37.271 45.594 245.033 1.00 3.00 O ATOM 1581 N ALA 416 36.373 45.614 247.109 1.00 3.00 N ATOM 1582 CA ALA 416 35.514 44.452 246.887 1.00 3.00 C ATOM 1583 C ALA 416 34.481 44.762 245.819 1.00 3.00 C ATOM 1584 O ALA 416 34.252 43.964 244.913 1.00 3.00 O ATOM 1585 N ALA 417 33.850 45.924 245.934 1.00 3.00 N ATOM 1586 CA ALA 417 32.844 46.342 244.968 1.00 3.00 C ATOM 1587 C ALA 417 33.441 46.349 243.564 1.00 3.00 C ATOM 1588 O ALA 417 32.793 45.954 242.597 1.00 3.00 O ATOM 1589 N ASP 418 34.682 46.802 243.453 1.00 3.00 N ATOM 1590 CA ASP 418 35.333 46.851 242.154 1.00 3.00 C ATOM 1591 C ASP 418 35.622 45.442 241.643 1.00 3.00 C ATOM 1592 O ASP 418 35.396 45.135 240.476 1.00 3.00 O ATOM 1593 N LYS 419 36.115 44.583 242.525 1.00 3.00 N ATOM 1594 CA LYS 419 36.419 43.210 242.146 1.00 3.00 C ATOM 1595 C LYS 419 35.197 42.508 241.544 1.00 3.00 C ATOM 1596 O LYS 419 35.323 41.794 240.548 1.00 3.00 O ATOM 1597 N GLN 420 34.021 42.709 242.132 1.00 3.00 N ATOM 1598 CA GLN 420 32.815 42.065 241.609 1.00 3.00 C ATOM 1599 C GLN 420 32.203 42.830 240.441 1.00 3.00 C ATOM 1600 O GLN 420 31.148 42.461 239.934 1.00 3.00 O ATOM 1601 N GLY 421 32.866 43.901 240.019 1.00 3.00 N ATOM 1602 CA GLY 421 32.371 44.678 238.897 1.00 3.00 C ATOM 1603 C GLY 421 31.069 45.429 239.121 1.00 3.00 C ATOM 1604 O GLY 421 30.320 45.660 238.166 1.00 3.00 O ATOM 1605 N ILE 422 30.786 45.812 240.363 1.00 3.00 N ATOM 1606 CA ILE 422 29.563 46.555 240.640 1.00 3.00 C ATOM 1607 C ILE 422 29.597 47.868 239.853 1.00 3.00 C ATOM 1608 O ILE 422 30.660 48.433 239.628 1.00 3.00 O ATOM 1609 N ARG 423 28.433 48.335 239.416 1.00 3.00 N ATOM 1610 CA ARG 423 28.344 49.580 238.663 1.00 3.00 C ATOM 1611 C ARG 423 28.235 50.749 239.628 1.00 3.00 C ATOM 1612 O ARG 423 28.734 51.840 239.367 1.00 3.00 O ATOM 1613 N PHE 424 27.587 50.504 240.757 1.00 3.00 N ATOM 1614 CA PHE 424 27.405 51.530 241.761 1.00 3.00 C ATOM 1615 C PHE 424 27.628 50.965 243.145 1.00 3.00 C ATOM 1616 O PHE 424 27.558 49.756 243.364 1.00 3.00 O ATOM 1617 N CYS 425 27.909 51.852 244.083 1.00 3.00 N ATOM 1618 CA CYS 425 28.094 51.460 245.462 1.00 3.00 C ATOM 1619 C CYS 425 27.234 52.427 246.268 1.00 3.00 C ATOM 1620 O CYS 425 27.274 53.635 246.038 1.00 3.00 O ATOM 1621 N VAL 426 26.425 51.895 247.179 1.00 3.00 N ATOM 1622 CA VAL 426 25.579 52.719 248.033 1.00 3.00 C ATOM 1623 C VAL 426 26.247 52.688 249.394 1.00 3.00 C ATOM 1624 O VAL 426 26.400 51.632 250.000 1.00 3.00 O ATOM 1625 N ILE 427 26.664 53.853 249.870 1.00 3.00 N ATOM 1626 CA ILE 427 27.348 53.934 251.147 1.00 3.00 C ATOM 1627 C ILE 427 26.454 54.501 252.254 1.00 3.00 C ATOM 1628 O ILE 427 26.055 55.662 252.212 1.00 3.00 O ATOM 1629 N ILE 428 26.137 53.658 253.233 1.00 3.00 N ATOM 1630 CA ILE 428 25.311 54.042 254.373 1.00 3.00 C ATOM 1631 C ILE 428 26.202 54.496 255.523 1.00 3.00 C ATOM 1632 O ILE 428 26.970 53.707 256.075 1.00 3.00 O ATOM 1633 N GLY 429 26.109 55.773 255.874 1.00 3.00 N ATOM 1634 CA GLY 429 26.890 56.297 256.981 1.00 3.00 C ATOM 1635 C GLY 429 25.902 56.663 258.069 1.00 3.00 C ATOM 1636 O GLY 429 24.900 57.314 257.792 1.00 3.00 O ATOM 1637 N ALA 430 26.164 56.262 259.305 1.00 3.00 N ATOM 1638 CA ALA 430 25.219 56.558 260.374 1.00 3.00 C ATOM 1639 C ALA 430 24.900 58.038 260.537 1.00 3.00 C ATOM 1640 O ALA 430 23.733 58.408 260.646 1.00 3.00 O ATOM 1641 N ASP 431 25.920 58.889 260.552 1.00 3.00 N ATOM 1642 CA ASP 431 25.662 60.315 260.692 1.00 3.00 C ATOM 1643 C ASP 431 24.794 60.807 259.546 1.00 3.00 C ATOM 1644 O ASP 431 23.797 61.492 259.764 1.00 3.00 O ATOM 1645 N GLU 432 25.171 60.442 258.325 1.00 3.00 N ATOM 1646 CA GLU 432 24.430 60.853 257.139 1.00 3.00 C ATOM 1647 C GLU 432 22.990 60.342 257.136 1.00 3.00 C ATOM 1648 O GLU 432 22.094 60.995 256.600 1.00 3.00 O ATOM 1649 N ALA 433 22.771 59.167 257.720 1.00 3.00 N ATOM 1650 CA ALA 433 21.437 58.575 257.765 1.00 3.00 C ATOM 1651 C ALA 433 20.496 59.455 258.585 1.00 3.00 C ATOM 1652 O ALA 433 19.304 59.548 258.293 1.00 3.00 O ATOM 1653 N ALA 434 21.045 60.098 259.611 1.00 3.00 N ATOM 1654 CA ALA 434 20.265 60.983 260.463 1.00 3.00 C ATOM 1655 C ALA 434 19.610 62.057 259.607 1.00 3.00 C ATOM 1656 O ALA 434 18.494 62.491 259.895 1.00 3.00 O ATOM 1657 N ALA 435 20.312 62.478 258.555 1.00 3.00 N ATOM 1658 CA ALA 435 19.811 63.512 257.655 1.00 3.00 C ATOM 1659 C ALA 435 19.040 62.952 256.470 1.00 3.00 C ATOM 1660 O ALA 435 18.701 63.678 255.529 1.00 3.00 O ATOM 1661 N GLN 436 18.760 61.655 256.517 1.00 3.00 N ATOM 1662 CA GLN 436 18.011 61.028 255.443 1.00 3.00 C ATOM 1663 C GLN 436 18.745 60.867 254.122 1.00 3.00 C ATOM 1664 O GLN 436 18.112 60.592 253.104 1.00 3.00 O ATOM 1665 N LYS 437 20.063 61.045 254.109 1.00 3.00 N ATOM 1666 CA LYS 437 20.793 60.871 252.858 1.00 3.00 C ATOM 1667 C LYS 437 21.745 59.683 252.915 1.00 3.00 C ATOM 1668 O LYS 437 22.053 59.149 253.977 1.00 3.00 O ATOM 1669 N SER 438 22.213 59.281 251.749 1.00 3.00 N ATOM 1670 CA SER 438 23.129 58.164 251.643 1.00 3.00 C ATOM 1671 C SER 438 24.034 58.552 250.487 1.00 3.00 C ATOM 1672 O SER 438 23.599 59.262 249.584 1.00 3.00 O ATOM 1673 N SER 439 25.288 58.122 250.518 1.00 3.00 N ATOM 1674 CA SER 439 26.209 58.453 249.435 1.00 3.00 C ATOM 1675 C SER 439 26.221 57.348 248.381 1.00 3.00 C ATOM 1676 O SER 439 26.304 56.160 248.711 1.00 3.00 O ATOM 1677 N LEU 440 26.137 57.747 247.116 1.00 3.00 N ATOM 1678 CA LEU 440 26.144 56.808 245.999 1.00 3.00 C ATOM 1679 C LEU 440 27.266 57.169 245.035 1.00 3.00 C ATOM 1680 O LEU 440 27.338 58.295 244.552 1.00 3.00 O ATOM 1681 N LYS 441 28.143 56.220 244.747 1.00 3.00 N ATOM 1682 CA LYS 441 29.227 56.504 243.830 1.00 3.00 C ATOM 1683 C LYS 441 29.185 55.651 242.576 1.00 3.00 C ATOM 1684 O LYS 441 28.827 54.473 242.615 1.00 3.00 O ATOM 1685 N ASP 442 29.542 56.269 241.457 1.00 3.00 N ATOM 1686 CA ASP 442 29.597 55.581 240.178 1.00 3.00 C ATOM 1687 C ASP 442 30.958 54.890 240.175 1.00 3.00 C ATOM 1688 O ASP 442 31.994 55.555 240.136 1.00 3.00 O ATOM 1689 N LEU 443 30.960 53.562 240.239 1.00 3.00 N ATOM 1690 CA LEU 443 32.211 52.805 240.273 1.00 3.00 C ATOM 1691 C LEU 443 33.145 53.051 239.087 1.00 3.00 C ATOM 1692 O LEU 443 34.341 52.764 239.167 1.00 3.00 O ATOM 1693 N GLN 444 32.616 53.583 237.992 1.00 3.00 N ATOM 1694 CA GLN 444 33.457 53.841 236.837 1.00 3.00 C ATOM 1695 C GLN 444 34.007 55.262 236.808 1.00 3.00 C ATOM 1696 O GLN 444 35.204 55.460 236.589 1.00 3.00 O ATOM 1697 N SER 445 33.146 56.248 237.045 1.00 3.00 N ATOM 1698 CA SER 445 33.585 57.641 237.046 1.00 3.00 C ATOM 1699 C SER 445 34.425 57.889 238.289 1.00 3.00 C ATOM 1700 O SER 445 35.469 58.535 238.231 1.00 3.00 O ATOM 1701 N GLY 446 33.956 57.364 239.418 1.00 3.00 N ATOM 1702 CA GLY 446 34.664 57.540 240.675 1.00 3.00 C ATOM 1703 C GLY 446 34.026 58.626 241.523 1.00 3.00 C ATOM 1704 O GLY 446 34.381 58.817 242.686 1.00 3.00 O ATOM 1705 N GLU 447 33.072 59.336 240.934 1.00 3.00 N ATOM 1706 CA GLU 447 32.383 60.413 241.624 1.00 3.00 C ATOM 1707 C GLU 447 31.290 59.893 242.545 1.00 3.00 C ATOM 1708 O GLU 447 30.905 58.724 242.475 1.00 3.00 O ATOM 1709 N GLN 448 30.790 60.762 243.416 1.00 3.00 N ATOM 1710 CA GLN 448 29.723 60.373 244.322 1.00 3.00 C ATOM 1711 C GLN 448 28.886 61.543 244.805 1.00 3.00 C ATOM 1712 O GLN 448 29.402 62.609 245.133 1.00 3.00 O ATOM 1713 N VAL 449 27.577 61.322 244.831 1.00 3.00 N ATOM 1714 CA VAL 449 26.613 62.327 245.246 1.00 3.00 C ATOM 1715 C VAL 449 25.814 61.829 246.441 1.00 3.00 C ATOM 1716 O VAL 449 25.703 60.622 246.666 1.00 3.00 O ATOM 1717 N GLU 450 25.263 62.764 247.209 1.00 3.00 N ATOM 1718 CA GLU 450 24.414 62.405 248.334 1.00 3.00 C ATOM 1719 C GLU 450 23.051 62.179 247.685 1.00 3.00 C ATOM 1720 O GLU 450 22.709 62.840 246.706 1.00 3.00 O ATOM 1721 N VAL 451 22.282 61.235 248.210 1.00 3.00 N ATOM 1722 CA VAL 451 20.964 60.955 247.663 1.00 3.00 C ATOM 1723 C VAL 451 20.018 60.653 248.815 1.00 3.00 C ATOM 1724 O VAL 451 20.379 59.950 249.766 1.00 3.00 O ATOM 1725 N ALA 452 18.810 61.199 248.738 1.00 3.00 N ATOM 1726 CA ALA 452 17.837 60.975 249.790 1.00 3.00 C ATOM 1727 C ALA 452 17.307 59.561 249.737 1.00 3.00 C ATOM 1728 O ALA 452 17.053 59.032 248.652 1.00 3.00 O ATOM 1729 N LEU 453 17.141 58.947 250.903 1.00 3.00 N ATOM 1730 CA LEU 453 16.639 57.581 250.972 1.00 3.00 C ATOM 1731 C LEU 453 15.456 57.396 250.036 1.00 3.00 C ATOM 1732 O LEU 453 15.377 56.415 249.296 1.00 3.00 O ATOM 1733 N ALA 454 14.546 58.364 250.063 1.00 3.00 N ATOM 1734 CA ALA 454 13.340 58.333 249.244 1.00 3.00 C ATOM 1735 C ALA 454 13.601 58.299 247.743 1.00 3.00 C ATOM 1736 O ALA 454 12.709 57.974 246.963 1.00 3.00 O ATOM 1737 N ASP 455 14.826 58.612 247.337 1.00 3.00 N ATOM 1738 CA ASP 455 15.155 58.633 245.916 1.00 3.00 C ATOM 1739 C ASP 455 16.250 57.670 245.464 1.00 3.00 C ATOM 1740 O ASP 455 16.556 57.609 244.270 1.00 3.00 O ATOM 1741 N LEU 456 16.843 56.926 246.395 1.00 3.00 N ATOM 1742 CA LEU 456 17.908 55.984 246.045 1.00 3.00 C ATOM 1743 C LEU 456 17.505 55.093 244.869 1.00 3.00 C ATOM 1744 O LEU 456 18.178 55.073 243.842 1.00 3.00 O ATOM 1745 N ALA 457 16.400 54.369 245.018 1.00 3.00 N ATOM 1746 CA ALA 457 15.916 53.482 243.964 1.00 3.00 C ATOM 1747 C ALA 457 15.785 54.186 242.624 1.00 3.00 C ATOM 1748 O ALA 457 16.529 53.906 241.681 1.00 3.00 O ATOM 1749 N GLU 458 14.829 55.102 242.547 1.00 3.00 N ATOM 1750 CA GLU 458 14.572 55.851 241.325 1.00 3.00 C ATOM 1751 C GLU 458 15.841 56.482 240.756 1.00 3.00 C ATOM 1752 O GLU 458 15.984 56.607 239.544 1.00 3.00 O ATOM 1753 N GLU 459 16.759 56.877 241.630 1.00 3.00 N ATOM 1754 CA GLU 459 18.005 57.496 241.185 1.00 3.00 C ATOM 1755 C GLU 459 18.861 56.488 240.424 1.00 3.00 C ATOM 1756 O GLU 459 19.271 56.740 239.288 1.00 3.00 O ATOM 1757 N ILE 460 19.131 55.347 241.051 1.00 3.00 N ATOM 1758 CA ILE 460 19.934 54.317 240.405 1.00 3.00 C ATOM 1759 C ILE 460 19.271 53.852 239.109 1.00 3.00 C ATOM 1760 O ILE 460 19.940 53.712 238.088 1.00 3.00 O ATOM 1761 N LYS 461 17.961 53.627 239.149 1.00 3.00 N ATOM 1762 CA LYS 461 17.234 53.182 237.963 1.00 3.00 C ATOM 1763 C LYS 461 17.481 54.093 236.768 1.00 3.00 C ATOM 1764 O LYS 461 17.575 53.623 235.639 1.00 3.00 O ATOM 1765 N ARG 462 17.589 55.394 237.017 1.00 3.00 N ATOM 1766 CA ARG 462 17.816 56.353 235.938 1.00 3.00 C ATOM 1767 C ARG 462 19.282 56.430 235.542 1.00 3.00 C ATOM 1768 O ARG 462 19.604 56.600 234.369 1.00 3.00 O ATOM 1769 N ARG 463 20.170 56.319 236.521 1.00 3.00 N ATOM 1770 CA ARG 463 21.598 56.382 236.246 1.00 3.00 C ATOM 1771 C ARG 463 21.942 55.233 235.305 1.00 3.00 C ATOM 1772 O ARG 463 21.417 54.129 235.453 1.00 3.00 O ATOM 1773 N LEU 464 22.813 55.492 234.333 1.00 3.00 N ATOM 1774 CA LEU 464 23.193 54.460 233.375 1.00 3.00 C ATOM 1775 C LEU 464 24.707 54.305 233.250 1.00 3.00 C ATOM 1776 O LEU 464 25.202 53.845 232.221 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 376 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 44.71 76.6 184 100.0 184 ARMSMC SECONDARY STRUCTURE . . 47.02 75.0 104 100.0 104 ARMSMC SURFACE . . . . . . . . 47.58 77.7 112 100.0 112 ARMSMC BURIED . . . . . . . . 39.84 75.0 72 100.0 72 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 62 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 54 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 40 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 35 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 37 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.96 (Number of atoms: 94) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.96 94 100.0 94 CRMSCA CRN = ALL/NP . . . . . 0.0314 CRMSCA SECONDARY STRUCTURE . . 3.25 52 100.0 52 CRMSCA SURFACE . . . . . . . . 3.06 58 100.0 58 CRMSCA BURIED . . . . . . . . 2.78 36 100.0 36 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.87 376 81.0 464 CRMSMC SECONDARY STRUCTURE . . 3.16 208 80.3 259 CRMSMC SURFACE . . . . . . . . 2.97 232 81.1 286 CRMSMC BURIED . . . . . . . . 2.72 144 80.9 178 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 302 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 242 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 186 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 186 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 116 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.87 376 55.5 678 CRMSALL SECONDARY STRUCTURE . . 3.16 208 52.8 394 CRMSALL SURFACE . . . . . . . . 2.97 232 55.5 418 CRMSALL BURIED . . . . . . . . 2.72 144 55.4 260 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.672 0.350 0.367 94 100.0 94 ERRCA SECONDARY STRUCTURE . . 1.813 0.368 0.383 52 100.0 52 ERRCA SURFACE . . . . . . . . 1.629 0.327 0.333 58 100.0 58 ERRCA BURIED . . . . . . . . 1.741 0.389 0.423 36 100.0 36 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.615 0.341 0.357 376 81.0 464 ERRMC SECONDARY STRUCTURE . . 1.760 0.360 0.373 208 80.3 259 ERRMC SURFACE . . . . . . . . 1.587 0.319 0.326 232 81.1 286 ERRMC BURIED . . . . . . . . 1.660 0.376 0.405 144 80.9 178 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 302 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 242 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 186 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 186 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 116 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.615 0.341 0.357 376 55.5 678 ERRALL SECONDARY STRUCTURE . . 1.760 0.360 0.373 208 52.8 394 ERRALL SURFACE . . . . . . . . 1.587 0.319 0.326 232 55.5 418 ERRALL BURIED . . . . . . . . 1.660 0.376 0.405 144 55.4 260 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 25 56 75 86 94 94 94 DISTCA CA (P) 26.60 59.57 79.79 91.49 100.00 94 DISTCA CA (RMS) 0.70 1.24 1.64 2.17 2.96 DISTCA ALL (N) 91 213 298 343 376 376 678 DISTALL ALL (P) 13.42 31.42 43.95 50.59 55.46 678 DISTALL ALL (RMS) 0.66 1.21 1.66 2.13 2.87 DISTALL END of the results output