####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 82 ( 328), selected 82 , name T0589TS328_1-D2 # Molecule2: number of CA atoms 82 ( 644), selected 82 , name T0589-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0589TS328_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 82 189 - 270 4.68 4.68 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 49 198 - 246 1.82 5.20 LONGEST_CONTINUOUS_SEGMENT: 49 199 - 247 1.98 5.15 LCS_AVERAGE: 40.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 205 - 245 0.92 5.23 LCS_AVERAGE: 28.55 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 82 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 189 V 189 7 7 82 6 14 31 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT L 190 L 190 7 7 82 5 14 31 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT T 191 T 191 7 7 82 5 7 31 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT G 192 G 192 7 7 82 5 17 31 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT F 193 F 193 7 7 82 7 19 32 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT F 194 F 194 7 7 82 10 22 38 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT Q 195 Q 195 7 7 82 6 18 29 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT S 196 S 196 4 6 82 4 4 4 4 6 9 11 20 30 35 52 63 68 68 71 71 74 77 77 79 LCS_GDT L 197 L 197 4 4 82 4 4 4 10 15 29 40 46 59 62 65 68 69 73 74 74 77 78 79 79 LCS_GDT N 198 N 198 4 49 82 4 4 6 15 32 50 54 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT I 199 I 199 4 49 82 3 4 12 22 27 50 54 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT S 200 S 200 4 49 82 0 4 6 10 18 35 51 56 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT E 201 E 201 4 49 82 3 4 8 13 24 42 53 56 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT T 202 T 202 14 49 82 14 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT Q 203 Q 203 14 49 82 4 8 28 38 45 50 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT I 204 I 204 40 49 82 4 8 13 20 44 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT K 205 K 205 41 49 82 4 20 37 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT S 206 S 206 41 49 82 4 31 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT C 207 C 207 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT I 208 I 208 41 49 82 11 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT S 209 S 209 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT I 210 I 210 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT I 211 I 211 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT D 212 D 212 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT N 213 N 213 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT L 214 L 214 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT E 215 E 215 41 49 82 13 31 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT K 216 K 216 41 49 82 13 31 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT I 217 I 217 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT G 218 G 218 41 49 82 3 29 40 43 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT E 219 E 219 41 49 82 9 29 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT A 220 A 220 41 49 82 10 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT K 221 K 221 41 49 82 16 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT V 222 V 222 41 49 82 16 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT K 223 K 223 41 49 82 16 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT L 224 L 224 41 49 82 16 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT E 225 E 225 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT L 226 L 226 41 49 82 12 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT E 227 E 227 41 49 82 16 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT K 228 K 228 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT E 229 E 229 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT G 230 G 230 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT I 231 I 231 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT N 232 N 232 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT P 233 P 233 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT E 234 E 234 41 49 82 13 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT Q 235 Q 235 41 49 82 16 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT T 236 T 236 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT Q 237 Q 237 41 49 82 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT K 238 K 238 41 49 82 16 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT I 239 I 239 41 49 82 16 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT I 240 I 240 41 49 82 16 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT D 241 D 241 41 49 82 16 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT F 242 F 242 41 49 82 16 32 40 43 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT V 243 V 243 41 49 82 16 29 40 43 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT K 244 K 244 41 49 82 16 31 40 43 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT I 245 I 245 41 49 82 16 31 40 43 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT D 246 D 246 4 49 82 4 6 29 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT G 247 G 247 5 49 82 4 5 5 8 10 29 40 56 59 62 65 68 70 73 74 75 77 78 79 79 LCS_GDT S 248 S 248 5 47 82 3 5 6 8 20 29 40 56 59 62 65 68 70 73 74 75 77 78 79 79 LCS_GDT V 249 V 249 5 11 82 4 5 6 10 14 29 40 44 59 62 63 68 69 72 74 75 77 78 79 79 LCS_GDT D 250 D 250 5 11 82 4 5 10 15 27 42 53 56 59 62 65 68 70 73 74 75 77 78 79 79 LCS_GDT D 251 D 251 5 11 82 4 5 10 31 38 50 54 56 61 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT V 252 V 252 3 5 82 0 3 5 5 5 6 16 38 51 62 65 68 70 73 74 75 77 78 79 79 LCS_GDT L 253 L 253 4 5 82 4 4 5 5 7 7 9 21 41 43 45 51 55 67 73 75 77 78 79 79 LCS_GDT D 254 D 254 4 5 82 4 4 10 10 17 18 20 35 41 43 45 51 60 64 72 75 77 78 79 79 LCS_GDT K 255 K 255 4 5 82 4 4 4 4 5 5 6 7 9 13 16 41 42 43 65 71 77 78 79 79 LCS_GDT L 256 L 256 4 5 82 4 4 5 5 5 6 7 7 9 11 14 16 17 22 27 39 57 60 75 77 LCS_GDT K 257 K 257 3 4 82 3 3 3 5 5 6 9 15 17 25 45 55 60 70 73 75 77 78 79 79 LCS_GDT H 258 H 258 3 4 82 0 3 3 4 4 5 11 11 54 62 65 66 70 73 74 75 77 78 79 79 LCS_GDT L 259 L 259 3 4 82 3 3 3 4 4 5 11 11 11 11 65 66 70 73 74 75 77 78 79 79 LCS_GDT S 260 S 260 3 9 82 3 3 28 41 45 48 55 59 60 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT Q 261 Q 261 4 9 82 4 4 6 8 10 42 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT T 262 T 262 4 9 82 4 4 6 8 10 16 17 58 62 63 65 67 70 73 74 75 77 78 79 79 LCS_GDT L 263 L 263 4 9 82 4 4 6 8 10 42 53 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT P 264 P 264 4 9 82 4 4 4 8 10 16 48 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT E 265 E 265 4 9 82 4 4 6 38 45 48 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT S 266 S 266 4 9 82 4 4 4 8 8 16 46 51 60 62 65 67 70 73 74 75 77 78 79 79 LCS_GDT E 267 E 267 4 9 82 4 23 40 43 47 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 LCS_GDT Q 268 Q 268 4 9 82 4 4 6 8 8 9 17 39 51 59 65 66 70 73 74 75 77 78 79 79 LCS_GDT F 269 F 269 3 5 82 3 3 3 3 4 5 5 6 10 10 12 18 22 33 37 74 75 77 79 79 LCS_GDT N 270 N 270 3 3 82 0 3 3 3 3 4 5 5 6 6 6 18 20 22 25 28 75 77 77 77 LCS_AVERAGE LCS_A: 56.31 ( 28.55 40.38 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 17 32 40 44 49 51 55 59 62 63 65 68 70 73 74 75 77 78 79 79 GDT PERCENT_AT 20.73 39.02 48.78 53.66 59.76 62.20 67.07 71.95 75.61 76.83 79.27 82.93 85.37 89.02 90.24 91.46 93.90 95.12 96.34 96.34 GDT RMS_LOCAL 0.37 0.62 0.81 1.19 1.38 1.47 1.73 1.97 2.25 2.29 2.47 2.87 3.00 3.30 3.40 3.70 3.92 4.09 4.21 4.18 GDT RMS_ALL_AT 5.24 5.23 5.24 5.30 5.17 5.07 4.99 4.97 5.00 4.99 4.91 4.92 4.79 4.76 4.77 4.70 4.69 4.69 4.68 4.69 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 189 V 189 3.230 3 0.000 0.000 3.297 50.000 28.571 LGA L 190 L 190 2.796 4 0.127 0.127 2.937 57.143 28.571 LGA T 191 T 191 2.756 3 0.018 0.018 2.832 57.143 32.653 LGA G 192 G 192 3.220 0 0.020 0.020 3.220 50.000 50.000 LGA F 193 F 193 2.544 7 0.000 0.000 2.784 60.952 22.165 LGA F 194 F 194 1.894 7 0.033 0.033 2.430 66.786 24.286 LGA Q 195 Q 195 3.250 5 0.644 0.644 6.067 36.429 16.190 LGA S 196 S 196 9.966 2 0.021 0.021 11.148 2.024 1.349 LGA L 197 L 197 7.307 4 0.236 0.236 7.780 17.381 8.690 LGA N 198 N 198 4.050 4 0.194 0.194 6.064 33.690 16.845 LGA I 199 I 199 3.751 4 0.627 0.627 6.199 35.476 17.738 LGA S 200 S 200 5.427 2 0.464 0.464 5.828 27.738 18.492 LGA E 201 E 201 5.335 5 0.463 0.463 5.335 38.095 16.931 LGA T 202 T 202 0.669 3 0.601 0.601 2.132 79.524 45.442 LGA Q 203 Q 203 3.317 5 0.054 0.054 3.317 57.262 25.450 LGA I 204 I 204 3.339 4 0.089 0.089 3.339 53.571 26.786 LGA K 205 K 205 2.216 5 0.053 0.053 2.340 66.786 29.683 LGA S 206 S 206 0.992 2 0.077 0.077 0.992 90.476 60.317 LGA C 207 C 207 0.633 2 0.072 0.072 0.731 90.476 60.317 LGA I 208 I 208 0.751 4 0.034 0.034 0.751 95.238 47.619 LGA S 209 S 209 0.365 2 0.067 0.067 0.717 97.619 65.079 LGA I 210 I 210 0.416 4 0.049 0.049 0.655 95.238 47.619 LGA I 211 I 211 0.656 4 0.000 0.000 0.656 90.476 45.238 LGA D 212 D 212 0.318 4 0.000 0.000 0.514 97.619 48.810 LGA N 213 N 213 0.704 4 0.000 0.000 1.019 88.214 44.107 LGA L 214 L 214 0.949 4 0.077 0.077 1.571 83.810 41.905 LGA E 215 E 215 1.007 5 0.206 0.206 1.707 81.548 36.243 LGA K 216 K 216 0.914 5 0.057 0.057 0.937 90.476 40.212 LGA I 217 I 217 0.833 4 0.679 0.679 2.896 82.143 41.071 LGA G 218 G 218 1.941 0 0.051 0.051 1.941 75.000 75.000 LGA E 219 E 219 1.414 5 0.057 0.057 1.561 79.286 35.238 LGA A 220 A 220 0.922 1 0.043 0.043 1.076 88.214 70.571 LGA K 221 K 221 0.687 5 0.046 0.046 0.782 92.857 41.270 LGA V 222 V 222 0.794 3 0.018 0.018 0.844 90.476 51.701 LGA K 223 K 223 0.362 5 0.030 0.030 0.493 100.000 44.444 LGA L 224 L 224 0.509 4 0.026 0.026 0.669 92.857 46.429 LGA E 225 E 225 0.657 5 0.023 0.023 0.943 90.476 40.212 LGA L 226 L 226 0.992 4 0.017 0.017 1.366 85.952 42.976 LGA E 227 E 227 1.150 5 0.153 0.153 1.150 81.429 36.190 LGA K 228 K 228 1.184 5 0.021 0.021 1.255 81.429 36.190 LGA E 229 E 229 1.032 5 0.064 0.064 1.261 81.429 36.190 LGA G 230 G 230 1.201 0 0.147 0.147 1.950 79.286 79.286 LGA I 231 I 231 1.232 4 0.033 0.033 1.383 81.429 40.714 LGA N 232 N 232 1.537 4 0.027 0.027 1.537 79.286 39.643 LGA P 233 P 233 1.445 3 0.088 0.088 1.523 79.286 45.306 LGA E 234 E 234 1.833 5 0.108 0.108 1.833 77.143 34.286 LGA Q 235 Q 235 1.434 5 0.049 0.049 1.577 83.810 37.249 LGA T 236 T 236 0.584 3 0.059 0.059 0.854 95.238 54.422 LGA Q 237 Q 237 0.831 5 0.048 0.048 0.944 92.857 41.270 LGA K 238 K 238 0.971 5 0.031 0.031 0.971 90.476 40.212 LGA I 239 I 239 0.926 4 0.026 0.026 1.133 88.214 44.107 LGA I 240 I 240 0.688 4 0.028 0.028 1.029 90.595 45.298 LGA D 241 D 241 0.510 4 0.117 0.117 1.418 90.595 45.298 LGA F 242 F 242 1.045 7 0.080 0.080 1.159 83.690 30.433 LGA V 243 V 243 1.677 3 0.026 0.026 1.994 75.000 42.857 LGA K 244 K 244 1.630 5 0.175 0.175 1.630 72.857 32.381 LGA I 245 I 245 1.691 4 0.074 0.074 2.496 75.238 37.619 LGA D 246 D 246 3.351 4 0.159 0.159 4.420 51.429 25.714 LGA G 247 G 247 7.080 0 0.118 0.118 7.400 12.857 12.857 LGA S 248 S 248 8.396 2 0.079 0.079 8.504 4.286 2.857 LGA V 249 V 249 9.104 3 0.266 0.266 9.104 2.976 1.701 LGA D 250 D 250 7.790 4 0.667 0.667 8.225 18.095 9.048 LGA D 251 D 251 6.194 4 0.619 0.619 7.492 17.500 8.750 LGA V 252 V 252 8.303 3 0.605 0.605 8.871 6.429 3.673 LGA L 253 L 253 12.053 4 0.572 0.572 12.215 0.000 0.000 LGA D 254 D 254 12.186 4 0.165 0.165 13.307 0.000 0.000 LGA K 255 K 255 12.597 5 0.272 0.272 14.095 0.000 0.000 LGA L 256 L 256 14.276 4 0.243 0.243 14.276 0.000 0.000 LGA K 257 K 257 11.344 5 0.629 0.629 12.224 0.714 0.317 LGA H 258 H 258 5.920 6 0.642 0.642 7.573 14.762 5.905 LGA L 259 L 259 6.400 4 0.592 0.592 6.622 17.262 8.631 LGA S 260 S 260 3.631 2 0.062 0.062 4.647 39.048 26.032 LGA Q 261 Q 261 3.777 5 0.358 0.358 5.312 40.952 18.201 LGA T 262 T 262 5.079 3 0.123 0.123 6.463 26.667 15.238 LGA L 263 L 263 3.869 4 0.339 0.339 3.869 43.333 21.667 LGA P 264 P 264 4.982 3 0.009 0.009 5.340 32.976 18.844 LGA E 265 E 265 3.368 5 0.590 0.590 6.376 38.571 17.143 LGA S 266 S 266 5.428 2 0.149 0.149 5.428 34.524 23.016 LGA E 267 E 267 1.921 5 0.618 0.618 3.680 55.833 24.815 LGA Q 268 Q 268 8.012 5 0.135 0.135 8.523 7.381 3.280 LGA F 269 F 269 9.651 7 0.515 0.515 11.128 1.310 0.476 LGA N 270 N 270 10.628 4 0.180 0.180 11.645 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 82 328 328 100.00 644 328 50.93 82 SUMMARY(RMSD_GDC): 4.679 4.640 4.640 57.496 30.285 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 82 82 4.0 59 1.97 64.024 60.036 2.848 LGA_LOCAL RMSD: 1.972 Number of atoms: 59 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 4.967 Number of assigned atoms: 82 Std_ASGN_ATOMS RMSD: 4.679 Standard rmsd on all 82 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.283873 * X + 0.017104 * Y + 0.958709 * Z + -50.362850 Y_new = 0.913729 * X + 0.298315 * Y + -0.275876 * Z + 30.927343 Z_new = -0.290716 * X + 0.954314 * Y + 0.069055 * Z + 166.699738 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.269575 0.294975 1.498561 [DEG: 72.7413 16.9008 85.8612 ] ZXZ: 1.290608 1.501686 -0.295702 [DEG: 73.9464 86.0403 -16.9425 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0589TS328_1-D2 REMARK 2: T0589-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0589TS328_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 82 82 4.0 59 1.97 60.036 4.68 REMARK ---------------------------------------------------------- MOLECULE T0589TS328_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0589 REMARK MODEL 1 REMARK PARENT 1wu7_A ATOM 673 N VAL 189 20.711 22.880 189.857 1.00 3.00 N ATOM 674 CA VAL 189 21.524 23.596 188.880 1.00 3.00 C ATOM 675 C VAL 189 22.911 22.970 188.777 1.00 3.00 C ATOM 676 O VAL 189 23.374 22.639 187.685 1.00 3.00 O ATOM 677 N LEU 190 23.570 22.808 189.918 1.00 3.00 N ATOM 678 CA LEU 190 24.904 22.230 189.942 1.00 3.00 C ATOM 679 C LEU 190 24.937 20.818 189.373 1.00 3.00 C ATOM 680 O LEU 190 25.916 20.425 188.742 1.00 3.00 O ATOM 681 N THR 191 23.872 20.054 189.592 1.00 3.00 N ATOM 682 CA THR 191 23.827 18.692 189.078 1.00 3.00 C ATOM 683 C THR 191 23.713 18.670 187.556 1.00 3.00 C ATOM 684 O THR 191 24.399 17.894 186.882 1.00 3.00 O ATOM 685 N GLY 192 22.846 19.522 187.017 1.00 3.00 N ATOM 686 CA GLY 192 22.663 19.599 185.575 1.00 3.00 C ATOM 687 C GLY 192 23.967 20.018 184.907 1.00 3.00 C ATOM 688 O GLY 192 24.404 19.400 183.939 1.00 3.00 O ATOM 689 N PHE 193 24.592 21.062 185.437 1.00 3.00 N ATOM 690 CA PHE 193 25.838 21.566 184.882 1.00 3.00 C ATOM 691 C PHE 193 26.996 20.582 185.009 1.00 3.00 C ATOM 692 O PHE 193 27.777 20.424 184.075 1.00 3.00 O ATOM 693 N PHE 194 27.116 19.925 186.159 1.00 3.00 N ATOM 694 CA PHE 194 28.196 18.963 186.349 1.00 3.00 C ATOM 695 C PHE 194 27.930 17.692 185.554 1.00 3.00 C ATOM 696 O PHE 194 28.815 17.185 184.866 1.00 3.00 O ATOM 697 N GLN 195 26.707 17.182 185.651 1.00 3.00 N ATOM 698 CA GLN 195 26.360 15.973 184.926 1.00 3.00 C ATOM 699 C GLN 195 27.332 14.868 185.289 1.00 3.00 C ATOM 700 O GLN 195 28.473 15.140 185.639 1.00 3.00 O ATOM 701 N SER 196 26.892 13.613 185.202 1.00 3.00 N ATOM 702 CA SER 196 27.773 12.505 185.530 1.00 3.00 C ATOM 703 C SER 196 28.839 12.299 184.463 1.00 3.00 C ATOM 704 O SER 196 29.820 11.578 184.683 1.00 3.00 O ATOM 705 N LEU 197 28.663 12.955 183.328 1.00 3.00 N ATOM 706 CA LEU 197 29.614 12.853 182.242 1.00 3.00 C ATOM 707 C LEU 197 30.628 13.987 182.355 1.00 3.00 C ATOM 708 O LEU 197 31.837 13.755 182.376 1.00 3.00 O ATOM 709 N ASN 198 30.126 15.217 182.449 1.00 9.00 N ATOM 710 CA ASN 198 30.992 16.384 182.569 1.00 9.00 C ATOM 711 C ASN 198 31.661 16.417 183.936 1.00 9.00 C ATOM 712 O ASN 198 32.628 17.144 184.146 1.00 9.00 O ATOM 713 N ILE 199 31.125 15.641 184.874 1.00 3.00 N ATOM 714 CA ILE 199 31.699 15.626 186.200 1.00 3.00 C ATOM 715 C ILE 199 32.574 14.415 186.446 1.00 3.00 C ATOM 716 O ILE 199 32.976 14.136 187.572 1.00 3.00 O ATOM 717 N SER 200 32.876 13.692 185.368 1.00 3.00 N ATOM 718 CA SER 200 33.701 12.507 185.481 1.00 3.00 C ATOM 719 C SER 200 33.168 11.573 186.559 1.00 3.00 C ATOM 720 O SER 200 33.934 11.083 187.394 1.00 3.00 O ATOM 721 N GLU 201 31.860 11.321 186.534 1.00 3.00 N ATOM 722 CA GLU 201 31.251 10.452 187.527 1.00 3.00 C ATOM 723 C GLU 201 30.416 11.237 188.540 1.00 3.00 C ATOM 724 O GLU 201 29.753 12.211 188.179 1.00 3.00 O ATOM 725 N THR 202 30.450 10.805 189.800 1.00 3.00 N ATOM 726 CA THR 202 29.686 11.452 190.877 1.00 3.00 C ATOM 727 C THR 202 29.973 12.923 190.567 1.00 3.00 C ATOM 728 O THR 202 30.964 13.532 191.028 1.00 3.00 O ATOM 729 N GLN 203 29.098 13.503 189.757 1.00 3.00 N ATOM 730 CA GLN 203 29.239 14.901 189.395 1.00 3.00 C ATOM 731 C GLN 203 29.422 15.759 190.639 1.00 3.00 C ATOM 732 O GLN 203 30.332 16.580 190.683 1.00 3.00 O ATOM 733 N ILE 204 28.571 15.563 191.630 1.00 3.00 N ATOM 734 CA ILE 204 28.725 16.417 192.792 1.00 3.00 C ATOM 735 C ILE 204 29.764 15.859 193.746 1.00 3.00 C ATOM 736 O ILE 204 30.510 16.623 194.363 1.00 3.00 O ATOM 737 N LYS 205 29.836 14.539 193.837 1.00 9.00 N ATOM 738 CA LYS 205 30.835 13.996 194.734 1.00 9.00 C ATOM 739 C LYS 205 32.197 14.429 194.242 1.00 9.00 C ATOM 740 O LYS 205 33.063 14.746 195.050 1.00 9.00 O ATOM 741 N SER 206 32.424 14.441 192.938 1.00 3.00 N ATOM 742 CA SER 206 33.776 14.799 192.517 1.00 3.00 C ATOM 743 C SER 206 34.100 16.276 192.384 1.00 3.00 C ATOM 744 O SER 206 35.169 16.756 192.772 1.00 3.00 O ATOM 745 N CYS 207 33.190 16.982 191.732 1.00 3.00 N ATOM 746 CA CYS 207 33.411 18.356 191.408 1.00 3.00 C ATOM 747 C CYS 207 32.993 19.368 192.448 1.00 3.00 C ATOM 748 O CYS 207 33.614 20.404 192.541 1.00 3.00 O ATOM 749 N ILE 208 32.014 19.037 193.260 1.00 3.00 N ATOM 750 CA ILE 208 31.534 19.934 194.292 1.00 3.00 C ATOM 751 C ILE 208 32.645 20.152 195.329 1.00 3.00 C ATOM 752 O ILE 208 32.910 21.278 195.755 1.00 3.00 O ATOM 753 N SER 209 33.294 19.056 195.717 1.00 3.00 N ATOM 754 CA SER 209 34.384 19.094 196.685 1.00 3.00 C ATOM 755 C SER 209 35.524 19.969 196.178 1.00 3.00 C ATOM 756 O SER 209 36.026 20.833 196.899 1.00 3.00 O ATOM 757 N ILE 210 35.938 19.731 194.938 1.00 3.00 N ATOM 758 CA ILE 210 37.012 20.510 194.331 1.00 3.00 C ATOM 759 C ILE 210 36.604 21.983 194.316 1.00 3.00 C ATOM 760 O ILE 210 37.351 22.846 194.776 1.00 3.00 O ATOM 761 N ILE 211 35.416 22.262 193.787 1.00 3.00 N ATOM 762 CA ILE 211 34.909 23.629 193.731 1.00 3.00 C ATOM 763 C ILE 211 34.939 24.220 195.137 1.00 3.00 C ATOM 764 O ILE 211 35.148 25.423 195.321 1.00 3.00 O ATOM 765 N ASP 212 34.733 23.356 196.126 1.00 3.00 N ATOM 766 CA ASP 212 34.723 23.764 197.523 1.00 3.00 C ATOM 767 C ASP 212 36.117 24.165 198.001 1.00 3.00 C ATOM 768 O ASP 212 36.256 24.893 198.983 1.00 3.00 O ATOM 769 N ASN 213 37.143 23.693 197.298 1.00 3.00 N ATOM 770 CA ASN 213 38.531 24.005 197.638 1.00 3.00 C ATOM 771 C ASN 213 39.080 25.148 196.782 1.00 3.00 C ATOM 772 O ASN 213 40.270 25.461 196.839 1.00 3.00 O ATOM 773 N LEU 214 38.207 25.768 195.995 1.00 3.00 N ATOM 774 CA LEU 214 38.610 26.853 195.107 1.00 3.00 C ATOM 775 C LEU 214 39.322 28.030 195.776 1.00 3.00 C ATOM 776 O LEU 214 40.208 28.648 195.180 1.00 3.00 O ATOM 777 N GLU 215 38.931 28.347 197.006 1.00 3.00 N ATOM 778 CA GLU 215 39.530 29.464 197.730 1.00 3.00 C ATOM 779 C GLU 215 40.658 29.024 198.665 1.00 3.00 C ATOM 780 O GLU 215 41.202 29.837 199.416 1.00 3.00 O ATOM 781 N LYS 216 41.012 27.743 198.614 1.00 3.00 N ATOM 782 CA LYS 216 42.067 27.215 199.472 1.00 3.00 C ATOM 783 C LYS 216 43.319 26.763 198.724 1.00 3.00 C ATOM 784 O LYS 216 44.436 26.972 199.198 1.00 3.00 O ATOM 785 N ILE 217 43.136 26.149 197.558 1.00 3.00 N ATOM 786 CA ILE 217 44.269 25.677 196.767 1.00 3.00 C ATOM 787 C ILE 217 44.700 26.693 195.708 1.00 3.00 C ATOM 788 O ILE 217 44.183 27.810 195.660 1.00 3.00 O ATOM 789 N GLY 218 45.653 26.301 194.868 1.00 3.00 N ATOM 790 CA GLY 218 46.152 27.181 193.814 1.00 3.00 C ATOM 791 C GLY 218 45.346 27.022 192.528 1.00 3.00 C ATOM 792 O GLY 218 44.724 25.983 192.294 1.00 3.00 O ATOM 793 N GLU 219 45.367 28.058 191.696 1.00 3.00 N ATOM 794 CA GLU 219 44.639 28.037 190.437 1.00 3.00 C ATOM 795 C GLU 219 45.166 26.911 189.559 1.00 3.00 C ATOM 796 O GLU 219 44.424 26.325 188.769 1.00 3.00 O ATOM 797 N ALA 220 46.452 26.610 189.710 1.00 3.00 N ATOM 798 CA ALA 220 47.086 25.551 188.938 1.00 3.00 C ATOM 799 C ALA 220 46.673 24.180 189.458 1.00 3.00 C ATOM 800 O ALA 220 46.430 23.258 188.681 1.00 3.00 O ATOM 801 N LYS 221 46.595 24.057 190.779 1.00 3.00 N ATOM 802 CA LYS 221 46.223 22.804 191.432 1.00 3.00 C ATOM 803 C LYS 221 44.728 22.521 191.246 1.00 3.00 C ATOM 804 O LYS 221 44.294 21.365 191.193 1.00 3.00 O ATOM 805 N VAL 222 43.952 23.596 191.149 1.00 3.00 N ATOM 806 CA VAL 222 42.510 23.512 190.953 1.00 3.00 C ATOM 807 C VAL 222 42.230 22.843 189.609 1.00 3.00 C ATOM 808 O VAL 222 41.429 21.916 189.520 1.00 3.00 O ATOM 809 N LYS 223 42.907 23.317 188.568 1.00 3.00 N ATOM 810 CA LYS 223 42.741 22.773 187.224 1.00 3.00 C ATOM 811 C LYS 223 43.084 21.286 187.200 1.00 3.00 C ATOM 812 O LYS 223 42.322 20.468 186.681 1.00 3.00 O ATOM 813 N LEU 224 44.238 20.942 187.764 1.00 3.00 N ATOM 814 CA LEU 224 44.679 19.552 187.810 1.00 3.00 C ATOM 815 C LEU 224 43.596 18.664 188.413 1.00 3.00 C ATOM 816 O LEU 224 43.287 17.596 187.885 1.00 3.00 O ATOM 817 N GLU 225 43.009 19.117 189.514 1.00 3.00 N ATOM 818 CA GLU 225 41.960 18.351 190.171 1.00 3.00 C ATOM 819 C GLU 225 40.718 18.222 189.293 1.00 3.00 C ATOM 820 O GLU 225 40.127 17.142 189.208 1.00 3.00 O ATOM 821 N LEU 226 40.319 19.316 188.645 1.00 3.00 N ATOM 822 CA LEU 226 39.151 19.278 187.766 1.00 3.00 C ATOM 823 C LEU 226 39.422 18.345 186.594 1.00 3.00 C ATOM 824 O LEU 226 38.527 17.635 186.126 1.00 3.00 O ATOM 825 N GLU 227 40.667 18.342 186.129 1.00 3.00 N ATOM 826 CA GLU 227 41.040 17.505 185.002 1.00 3.00 C ATOM 827 C GLU 227 41.260 16.048 185.391 1.00 3.00 C ATOM 828 O GLU 227 41.358 15.183 184.527 1.00 3.00 O ATOM 829 N LYS 228 41.326 15.778 186.690 1.00 3.00 N ATOM 830 CA LYS 228 41.504 14.409 187.162 1.00 3.00 C ATOM 831 C LYS 228 40.139 13.738 187.303 1.00 3.00 C ATOM 832 O LYS 228 40.041 12.513 187.358 1.00 3.00 O ATOM 833 N GLU 229 39.085 14.549 187.351 1.00 3.00 N ATOM 834 CA GLU 229 37.729 14.036 187.488 1.00 3.00 C ATOM 835 C GLU 229 37.044 13.818 186.139 1.00 3.00 C ATOM 836 O GLU 229 35.813 13.765 186.064 1.00 3.00 O ATOM 837 N GLY 230 37.841 13.702 185.077 1.00 3.00 N ATOM 838 CA GLY 230 37.296 13.472 183.746 1.00 3.00 C ATOM 839 C GLY 230 36.613 14.650 183.066 1.00 3.00 C ATOM 840 O GLY 230 35.707 14.463 182.247 1.00 3.00 O ATOM 841 N ILE 231 37.041 15.865 183.390 1.00 3.00 N ATOM 842 CA ILE 231 36.451 17.055 182.790 1.00 3.00 C ATOM 843 C ILE 231 37.376 17.634 181.718 1.00 3.00 C ATOM 844 O ILE 231 38.568 17.833 181.957 1.00 3.00 O ATOM 845 N ASN 232 36.822 17.887 180.534 1.00 3.00 N ATOM 846 CA ASN 232 37.612 18.440 179.447 1.00 3.00 C ATOM 847 C ASN 232 37.973 19.895 179.686 1.00 3.00 C ATOM 848 O ASN 232 37.456 20.516 180.620 1.00 3.00 O ATOM 849 N PRO 233 38.864 20.440 178.857 1.00 3.00 N ATOM 850 CA PRO 233 39.285 21.841 178.986 1.00 3.00 C ATOM 851 C PRO 233 38.060 22.723 178.872 1.00 3.00 C ATOM 852 O PRO 233 38.014 23.844 179.375 1.00 3.00 O ATOM 853 N GLU 234 37.073 22.156 178.198 1.00 3.00 N ATOM 854 CA GLU 234 35.763 22.731 177.957 1.00 3.00 C ATOM 855 C GLU 234 35.131 23.156 179.291 1.00 3.00 C ATOM 856 O GLU 234 35.001 24.348 179.600 1.00 3.00 O ATOM 857 N GLN 235 34.749 22.156 180.080 1.00 3.00 N ATOM 858 CA GLN 235 34.128 22.410 181.361 1.00 3.00 C ATOM 859 C GLN 235 35.100 22.974 182.374 1.00 3.00 C ATOM 860 O GLN 235 34.718 23.760 183.241 1.00 3.00 O ATOM 861 N THR 236 36.361 22.575 182.274 1.00 3.00 N ATOM 862 CA THR 236 37.363 23.072 183.206 1.00 3.00 C ATOM 863 C THR 236 37.431 24.590 183.121 1.00 3.00 C ATOM 864 O THR 236 37.606 25.268 184.135 1.00 3.00 O ATOM 865 N GLN 237 37.286 25.120 181.908 1.00 3.00 N ATOM 866 CA GLN 237 37.349 26.561 181.693 1.00 3.00 C ATOM 867 C GLN 237 36.122 27.290 182.223 1.00 3.00 C ATOM 868 O GLN 237 36.235 28.380 182.779 1.00 3.00 O ATOM 869 N LYS 238 34.952 26.686 182.045 1.00 3.00 N ATOM 870 CA LYS 238 33.713 27.294 182.503 1.00 3.00 C ATOM 871 C LYS 238 33.673 27.318 184.028 1.00 3.00 C ATOM 872 O LYS 238 33.225 28.292 184.632 1.00 3.00 O ATOM 873 N ILE 239 34.146 26.247 184.651 1.00 3.00 N ATOM 874 CA ILE 239 34.154 26.179 186.106 1.00 3.00 C ATOM 875 C ILE 239 35.087 27.234 186.699 1.00 3.00 C ATOM 876 O ILE 239 34.704 27.977 187.604 1.00 3.00 O ATOM 877 N ILE 240 36.311 27.302 186.186 1.00 3.00 N ATOM 878 CA ILE 240 37.266 28.276 186.689 1.00 3.00 C ATOM 879 C ILE 240 36.708 29.686 186.516 1.00 3.00 C ATOM 880 O ILE 240 36.831 30.517 187.414 1.00 3.00 O ATOM 881 N ASP 241 36.093 29.955 185.368 1.00 3.00 N ATOM 882 CA ASP 241 35.516 31.272 185.111 1.00 3.00 C ATOM 883 C ASP 241 34.388 31.533 186.113 1.00 3.00 C ATOM 884 O ASP 241 34.406 32.527 186.847 1.00 3.00 O ATOM 885 N PHE 242 33.417 30.624 186.136 1.00 3.00 N ATOM 886 CA PHE 242 32.265 30.709 187.030 1.00 3.00 C ATOM 887 C PHE 242 32.630 30.914 188.502 1.00 3.00 C ATOM 888 O PHE 242 31.924 31.627 189.220 1.00 3.00 O ATOM 889 N VAL 243 33.713 30.287 188.957 1.00 3.00 N ATOM 890 CA VAL 243 34.142 30.440 190.346 1.00 3.00 C ATOM 891 C VAL 243 34.879 31.757 190.565 1.00 3.00 C ATOM 892 O VAL 243 34.995 32.230 191.693 1.00 3.00 O ATOM 893 N LYS 244 35.374 32.345 189.482 1.00 3.00 N ATOM 894 CA LYS 244 36.118 33.596 189.569 1.00 3.00 C ATOM 895 C LYS 244 35.211 34.812 189.652 1.00 3.00 C ATOM 896 O LYS 244 35.605 35.852 190.172 1.00 3.00 O ATOM 897 N ILE 245 33.998 34.686 189.132 1.00 3.00 N ATOM 898 CA ILE 245 33.086 35.810 189.169 1.00 3.00 C ATOM 899 C ILE 245 31.637 35.385 189.168 1.00 3.00 C ATOM 900 O ILE 245 31.283 34.340 188.626 1.00 3.00 O ATOM 901 N ASP 246 30.795 36.201 189.785 1.00 3.00 N ATOM 902 CA ASP 246 29.373 35.912 189.844 1.00 3.00 C ATOM 903 C ASP 246 28.746 36.298 188.514 1.00 3.00 C ATOM 904 O ASP 246 29.275 37.136 187.786 1.00 3.00 O ATOM 905 N GLY 247 27.617 35.678 188.201 1.00 3.00 N ATOM 906 CA GLY 247 26.910 35.953 186.960 1.00 3.00 C ATOM 907 C GLY 247 25.476 36.366 187.265 1.00 3.00 C ATOM 908 O GLY 247 24.978 36.131 188.364 1.00 3.00 O ATOM 909 N SER 248 24.817 36.987 186.292 1.00 3.00 N ATOM 910 CA SER 248 23.431 37.370 186.480 1.00 3.00 C ATOM 911 C SER 248 22.625 36.118 186.184 1.00 3.00 C ATOM 912 O SER 248 23.134 35.206 185.536 1.00 3.00 O ATOM 913 N VAL 249 21.387 36.049 186.655 1.00 3.00 N ATOM 914 CA VAL 249 20.575 34.863 186.383 1.00 3.00 C ATOM 915 C VAL 249 20.533 35.388 184.947 1.00 3.00 C ATOM 916 O VAL 249 20.917 34.753 184.001 1.00 3.00 O ATOM 917 N ASP 250 20.070 36.647 184.788 1.00 3.00 N ATOM 918 CA ASP 250 20.154 37.225 183.387 1.00 3.00 C ATOM 919 C ASP 250 21.631 37.756 183.319 1.00 3.00 C ATOM 920 O ASP 250 22.011 38.593 184.124 1.00 3.00 O ATOM 921 N ASP 251 22.347 37.156 182.396 1.00 3.00 N ATOM 922 CA ASP 251 23.778 37.509 182.230 1.00 3.00 C ATOM 923 C ASP 251 23.920 38.701 181.299 1.00 3.00 C ATOM 924 O ASP 251 23.064 38.957 180.500 1.00 3.00 O ATOM 925 N VAL 252 25.017 39.457 181.462 1.00 9.00 N ATOM 926 CA VAL 252 25.283 40.641 180.604 1.00 9.00 C ATOM 927 C VAL 252 26.704 40.505 180.162 1.00 9.00 C ATOM 928 O VAL 252 27.588 40.340 180.994 1.00 9.00 O ATOM 929 N LEU 253 26.956 40.785 178.885 1.00 9.00 N ATOM 930 CA LEU 253 28.330 40.616 178.459 1.00 9.00 C ATOM 931 C LEU 253 29.033 41.962 178.305 1.00 9.00 C ATOM 932 O LEU 253 28.489 43.028 178.627 1.00 9.00 O ATOM 933 N ASP 254 30.197 41.821 177.679 1.00 9.00 N ATOM 934 CA ASP 254 30.995 43.034 177.483 1.00 9.00 C ATOM 935 C ASP 254 30.432 44.077 176.535 1.00 9.00 C ATOM 936 O ASP 254 30.881 45.257 176.574 1.00 9.00 O ATOM 937 N LYS 255 29.443 43.744 175.706 1.00 9.00 N ATOM 938 CA LYS 255 28.817 44.724 174.819 1.00 9.00 C ATOM 939 C LYS 255 27.571 45.206 175.431 1.00 9.00 C ATOM 940 O LYS 255 26.796 45.897 174.770 1.00 9.00 O ATOM 941 N LEU 256 27.263 44.758 176.672 1.00 9.00 N ATOM 942 CA LEU 256 26.032 45.180 177.320 1.00 9.00 C ATOM 943 C LEU 256 24.783 44.364 176.996 1.00 9.00 C ATOM 944 O LEU 256 23.691 44.713 177.418 1.00 9.00 O ATOM 945 N LYS 257 25.001 43.210 176.355 1.00 9.00 N ATOM 946 CA LYS 257 23.848 42.447 175.898 1.00 9.00 C ATOM 947 C LYS 257 23.413 41.512 176.976 1.00 9.00 C ATOM 948 O LYS 257 24.197 41.095 177.752 1.00 9.00 O ATOM 949 N HIS 258 22.167 41.128 176.950 1.00 9.00 N ATOM 950 CA HIS 258 21.621 40.212 177.984 1.00 9.00 C ATOM 951 C HIS 258 21.526 38.846 177.378 1.00 9.00 C ATOM 952 O HIS 258 21.233 38.678 176.216 1.00 9.00 O ATOM 953 N LEU 259 21.701 37.799 178.216 1.00 3.00 N ATOM 954 CA LEU 259 21.572 36.418 177.647 1.00 3.00 C ATOM 955 C LEU 259 21.422 35.458 178.826 1.00 3.00 C ATOM 956 O LEU 259 21.634 35.802 179.973 1.00 3.00 O ATOM 957 N SER 260 20.954 34.250 178.482 1.00 3.00 N ATOM 958 CA SER 260 20.912 33.196 179.532 1.00 3.00 C ATOM 959 C SER 260 22.059 32.165 179.259 1.00 3.00 C ATOM 960 O SER 260 22.681 31.734 180.199 1.00 3.00 O ATOM 961 N GLN 261 22.264 31.788 178.014 1.00 3.00 N ATOM 962 CA GLN 261 23.285 30.773 177.647 1.00 3.00 C ATOM 963 C GLN 261 24.660 30.188 177.966 1.00 3.00 C ATOM 964 O GLN 261 25.172 29.348 177.228 1.00 3.00 O ATOM 965 N THR 262 25.258 30.634 179.067 1.00 3.00 N ATOM 966 CA THR 262 26.571 30.135 179.461 1.00 3.00 C ATOM 967 C THR 262 26.579 28.610 179.589 1.00 3.00 C ATOM 968 O THR 262 27.594 27.969 179.319 1.00 3.00 O ATOM 969 N LEU 263 25.449 28.033 179.991 1.00 3.00 N ATOM 970 CA LEU 263 25.347 26.581 180.135 1.00 3.00 C ATOM 971 C LEU 263 24.630 25.974 178.936 1.00 3.00 C ATOM 972 O LEU 263 24.413 24.763 178.877 1.00 3.00 O ATOM 973 N PRO 264 24.254 26.828 177.989 1.00 3.00 N ATOM 974 CA PRO 264 23.581 26.375 176.783 1.00 3.00 C ATOM 975 C PRO 264 22.267 25.639 176.969 1.00 3.00 C ATOM 976 O PRO 264 21.818 24.933 176.063 1.00 3.00 O ATOM 977 N GLU 265 21.639 25.801 178.130 1.00 3.00 N ATOM 978 CA GLU 265 20.367 25.131 178.392 1.00 3.00 C ATOM 979 C GLU 265 19.369 26.026 179.129 1.00 3.00 C ATOM 980 O GLU 265 19.755 26.933 179.868 1.00 3.00 O ATOM 981 N SER 266 18.082 25.765 178.911 1.00 3.00 N ATOM 982 CA SER 266 17.015 26.525 179.553 1.00 3.00 C ATOM 983 C SER 266 16.109 25.580 180.333 1.00 3.00 C ATOM 984 O SER 266 14.939 25.406 179.997 1.00 3.00 O ATOM 985 N GLU 267 16.659 24.972 181.379 1.00 3.00 N ATOM 986 CA GLU 267 15.904 24.036 182.205 1.00 3.00 C ATOM 987 C GLU 267 15.071 25.275 182.607 1.00 3.00 C ATOM 988 O GLU 267 15.365 25.859 183.662 1.00 3.00 O ATOM 989 N GLN 268 14.034 25.640 181.867 1.00 3.00 N ATOM 990 CA GLN 268 13.192 26.797 182.215 1.00 3.00 C ATOM 991 C GLN 268 12.062 26.339 183.117 1.00 3.00 C ATOM 992 O GLN 268 11.472 27.160 183.805 1.00 3.00 O ATOM 993 N PHE 269 11.775 25.034 183.084 1.00 3.00 N ATOM 994 CA PHE 269 10.728 24.514 183.967 1.00 3.00 C ATOM 995 C PHE 269 9.296 24.758 183.491 1.00 3.00 C ATOM 996 O PHE 269 9.053 25.458 182.485 1.00 3.00 O ATOM 997 N ASN 270 8.354 24.174 184.213 1.00 9.00 N ATOM 998 CA ASN 270 6.965 24.195 183.767 1.00 9.00 C ATOM 999 C ASN 270 6.346 25.582 183.802 1.00 9.00 C ATOM 1000 O ASN 270 5.252 25.761 183.251 1.00 9.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 328 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 60.53 72.2 162 100.0 162 ARMSMC SECONDARY STRUCTURE . . 59.25 76.7 116 100.0 116 ARMSMC SURFACE . . . . . . . . 63.58 69.0 116 100.0 116 ARMSMC BURIED . . . . . . . . 52.05 80.4 46 100.0 46 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 76 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 71 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 55 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 54 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 59 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 45 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 42 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 19 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.68 (Number of atoms: 82) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.68 82 100.0 82 CRMSCA CRN = ALL/NP . . . . . 0.0571 CRMSCA SECONDARY STRUCTURE . . 4.51 58 100.0 58 CRMSCA SURFACE . . . . . . . . 4.73 59 100.0 59 CRMSCA BURIED . . . . . . . . 4.54 23 100.0 23 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.64 328 80.8 406 CRMSMC SECONDARY STRUCTURE . . 4.47 232 80.6 288 CRMSMC SURFACE . . . . . . . . 4.73 236 80.8 292 CRMSMC BURIED . . . . . . . . 4.41 92 80.7 114 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 316 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 264 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 232 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 221 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 95 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.64 328 50.9 644 CRMSALL SECONDARY STRUCTURE . . 4.47 232 50.0 464 CRMSALL SURFACE . . . . . . . . 4.73 236 51.6 457 CRMSALL BURIED . . . . . . . . 4.41 92 49.2 187 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.936 0.301 0.292 82 100.0 82 ERRCA SECONDARY STRUCTURE . . 1.821 0.308 0.313 58 100.0 58 ERRCA SURFACE . . . . . . . . 1.895 0.282 0.277 59 100.0 59 ERRCA BURIED . . . . . . . . 2.042 0.349 0.328 23 100.0 23 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.913 0.299 0.290 328 80.8 406 ERRMC SECONDARY STRUCTURE . . 1.833 0.311 0.318 232 80.6 288 ERRMC SURFACE . . . . . . . . 1.910 0.286 0.278 236 80.8 292 ERRMC BURIED . . . . . . . . 1.918 0.332 0.320 92 80.7 114 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 316 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 264 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 232 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 221 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 95 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.913 0.299 0.290 328 50.9 644 ERRALL SECONDARY STRUCTURE . . 1.833 0.311 0.318 232 50.0 464 ERRALL SURFACE . . . . . . . . 1.910 0.286 0.278 236 51.6 457 ERRALL BURIED . . . . . . . . 1.918 0.332 0.320 92 49.2 187 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 14 33 45 61 77 82 82 DISTCA CA (P) 17.07 40.24 54.88 74.39 93.90 82 DISTCA CA (RMS) 0.82 1.24 1.63 2.41 3.92 DISTCA ALL (N) 52 138 186 246 308 328 644 DISTALL ALL (P) 8.07 21.43 28.88 38.20 47.83 644 DISTALL ALL (RMS) 0.80 1.28 1.66 2.40 3.84 DISTALL END of the results output