####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 21 ( 170), selected 21 , name T0588TS117_1_2-D1 # Molecule2: number of CA atoms 381 ( 3028), selected 21 , name T0588-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0588TS117_1_2-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 365 - 385 2.36 2.36 LCS_AVERAGE: 5.51 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 366 - 385 1.93 2.42 LCS_AVERAGE: 5.07 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 376 - 385 0.66 2.97 LCS_AVERAGE: 1.97 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 21 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 365 L 365 5 6 21 3 4 5 6 8 11 11 12 17 19 21 21 21 21 21 21 21 21 21 21 LCS_GDT R 366 R 366 5 20 21 4 4 5 6 10 11 15 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT R 367 R 367 5 20 21 4 4 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT A 368 A 368 6 20 21 4 6 10 15 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT S 369 S 369 6 20 21 6 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT F 370 F 370 6 20 21 5 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT F 371 F 371 6 20 21 5 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT D 372 D 372 6 20 21 5 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT P 373 P 373 6 20 21 5 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT K 374 K 374 4 20 21 3 3 8 15 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT A 375 A 375 3 20 21 3 3 5 6 10 11 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT G 376 G 376 10 20 21 7 9 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT Y 377 Y 377 10 20 21 7 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT E 378 E 378 10 20 21 7 10 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT A 379 A 379 10 20 21 7 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT I 380 I 380 10 20 21 7 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT G 381 G 381 10 20 21 7 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT A 382 A 382 10 20 21 7 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT Q 383 Q 383 10 20 21 6 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT F 384 F 384 10 20 21 3 7 10 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT R 385 R 385 10 20 21 6 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_AVERAGE LCS_A: 4.19 ( 1.97 5.07 5.51 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 12 14 16 18 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 GDT PERCENT_AT 1.84 3.15 3.67 4.20 4.72 4.72 4.72 5.25 5.25 5.25 5.51 5.51 5.51 5.51 5.51 5.51 5.51 5.51 5.51 5.51 GDT RMS_LOCAL 0.31 0.70 0.84 1.04 1.28 1.28 1.28 1.93 1.93 1.93 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 GDT RMS_ALL_AT 3.06 2.44 2.48 2.48 2.46 2.46 2.46 2.42 2.42 2.42 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 365 L 365 6.950 0 0.184 1.418 13.285 19.405 10.060 LGA R 366 R 366 4.305 0 0.235 1.135 12.033 43.929 21.515 LGA R 367 R 367 1.420 0 0.293 1.014 3.929 69.762 69.870 LGA A 368 A 368 2.651 0 0.258 0.251 4.300 67.143 61.143 LGA S 369 S 369 0.693 0 0.240 0.290 1.813 90.595 86.111 LGA F 370 F 370 0.687 0 0.070 1.166 4.828 90.476 69.654 LGA F 371 F 371 1.176 0 0.057 0.497 2.847 83.690 73.939 LGA D 372 D 372 0.910 0 0.356 1.173 4.149 79.881 68.452 LGA P 373 P 373 1.071 0 0.392 0.400 1.715 81.548 80.272 LGA K 374 K 374 2.408 0 0.648 0.823 11.453 55.952 32.646 LGA A 375 A 375 4.671 0 0.070 0.075 6.992 42.143 36.381 LGA G 376 G 376 2.022 0 0.330 0.330 2.022 72.976 72.976 LGA Y 377 Y 377 0.808 0 0.107 0.449 1.405 88.214 87.460 LGA E 378 E 378 1.407 0 0.025 1.040 6.253 83.690 62.011 LGA A 379 A 379 0.971 0 0.048 0.099 1.661 92.976 88.952 LGA I 380 I 380 0.310 0 0.107 0.868 2.885 95.238 87.679 LGA G 381 G 381 1.052 0 0.141 0.141 1.138 85.952 85.952 LGA A 382 A 382 0.682 0 0.154 0.156 1.366 92.857 90.571 LGA Q 383 Q 383 0.963 0 0.030 0.581 1.919 86.190 85.608 LGA F 384 F 384 2.005 0 0.248 0.803 4.600 77.262 55.931 LGA R 385 R 385 0.704 0 0.125 1.107 5.175 77.738 70.260 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 21 84 84 100.00 170 170 100.00 381 SUMMARY(RMSD_GDC): 2.364 2.209 3.557 4.141 3.668 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 21 381 4.0 20 1.93 4.528 4.804 0.987 LGA_LOCAL RMSD: 1.927 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.416 Number of assigned atoms: 21 Std_ASGN_ATOMS RMSD: 2.364 Standard rmsd on all 21 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.032143 * X + 0.655764 * Y + 0.754282 * Z + 41.408669 Y_new = 0.119840 * X + 0.746698 * Y + -0.654278 * Z + 35.691456 Z_new = -0.992273 * X + 0.111424 * Y + -0.054586 * Z + 15.687685 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.308748 1.446400 2.026326 [DEG: 74.9858 82.8726 116.0999 ] ZXZ: 0.856276 1.625409 -1.458974 [DEG: 49.0610 93.1291 -83.5930 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0588TS117_1_2-D1 REMARK 2: T0588-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0588TS117_1_2-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 21 381 4.0 20 1.93 4.804 2.36 REMARK ---------------------------------------------------------- MOLECULE T0588TS117_1_2-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 2 REMARK PFRMAT TS REMARK TARGET T0588 REMARK PARENT N/A ATOM 2211 N LEU 365 24.666 26.295 13.167 1.00 0.00 N ATOM 2212 CA LEU 365 25.284 26.053 11.904 1.00 0.00 C ATOM 2213 C LEU 365 24.499 24.933 11.318 1.00 0.00 C ATOM 2214 O LEU 365 23.716 25.137 10.392 1.00 0.00 O ATOM 2215 CB LEU 365 26.771 25.618 12.016 1.00 0.00 C ATOM 2216 CG LEU 365 27.449 25.145 10.704 1.00 0.00 C ATOM 2217 CD1 LEU 365 27.555 26.265 9.650 1.00 0.00 C ATOM 2218 CD2 LEU 365 28.804 24.468 10.998 1.00 0.00 C ATOM 2219 N ARG 366 24.687 23.724 11.863 1.00 0.00 N ATOM 2220 CA ARG 366 24.106 22.582 11.237 1.00 0.00 C ATOM 2221 C ARG 366 23.642 21.687 12.308 1.00 0.00 C ATOM 2222 O ARG 366 23.082 20.622 12.073 1.00 0.00 O ATOM 2223 CB ARG 366 24.990 21.767 10.292 1.00 0.00 C ATOM 2224 CG ARG 366 26.179 21.028 10.886 1.00 0.00 C ATOM 2225 CD ARG 366 26.885 20.228 9.787 1.00 0.00 C ATOM 2226 NE ARG 366 27.684 21.182 8.949 1.00 0.00 N ATOM 2227 CZ ARG 366 27.823 20.972 7.592 1.00 0.00 C ATOM 2228 NH1 ARG 366 28.328 21.957 6.787 1.00 0.00 H ATOM 2229 NH2 ARG 366 27.622 19.696 7.077 1.00 0.00 H ATOM 2230 N ARG 367 23.792 22.118 13.540 1.00 0.00 N ATOM 2231 CA ARG 367 23.491 21.152 14.524 1.00 0.00 C ATOM 2232 C ARG 367 22.122 21.573 14.996 1.00 0.00 C ATOM 2233 O ARG 367 21.685 21.107 16.042 1.00 0.00 O ATOM 2234 CB ARG 367 24.567 21.005 15.568 1.00 0.00 C ATOM 2235 CG ARG 367 25.901 20.439 15.102 1.00 0.00 C ATOM 2236 CD ARG 367 26.860 20.340 16.298 1.00 0.00 C ATOM 2237 NE ARG 367 27.980 19.429 15.959 1.00 0.00 N ATOM 2238 CZ ARG 367 29.160 19.471 16.671 1.00 0.00 C ATOM 2239 NH1 ARG 367 30.189 18.654 16.222 1.00 0.00 H ATOM 2240 NH2 ARG 367 29.262 20.149 17.858 1.00 0.00 H ATOM 2241 N ALA 368 21.422 22.427 14.185 1.00 0.00 N ATOM 2242 CA ALA 368 20.335 23.268 14.574 1.00 0.00 C ATOM 2243 C ALA 368 19.107 22.792 13.967 1.00 0.00 C ATOM 2244 O ALA 368 18.335 22.097 14.615 1.00 0.00 O ATOM 2245 CB ALA 368 20.369 24.754 14.144 1.00 0.00 C ATOM 2246 N SER 369 18.889 23.272 12.731 1.00 0.00 N ATOM 2247 CA SER 369 17.774 22.961 11.942 1.00 0.00 C ATOM 2248 C SER 369 18.311 22.253 10.761 1.00 0.00 C ATOM 2249 O SER 369 17.625 22.128 9.763 1.00 0.00 O ATOM 2250 CB SER 369 17.144 24.268 11.442 1.00 0.00 C ATOM 2251 OG SER 369 18.162 25.244 11.256 1.00 0.00 O ATOM 2252 N PHE 370 19.547 21.759 10.800 1.00 0.00 N ATOM 2253 CA PHE 370 20.047 21.206 9.571 1.00 0.00 C ATOM 2254 C PHE 370 19.713 19.770 9.686 1.00 0.00 C ATOM 2255 O PHE 370 19.541 19.106 8.669 1.00 0.00 O ATOM 2256 CB PHE 370 21.523 21.440 9.396 1.00 0.00 C ATOM 2257 CG PHE 370 22.313 20.606 8.444 1.00 0.00 C ATOM 2258 CD1 PHE 370 22.962 21.259 7.428 1.00 0.00 C ATOM 2259 CD2 PHE 370 22.796 19.347 8.747 1.00 0.00 C ATOM 2260 CE1 PHE 370 23.503 20.487 6.450 1.00 0.00 C ATOM 2261 CE2 PHE 370 23.768 18.737 7.977 1.00 0.00 C ATOM 2262 CZ PHE 370 24.089 19.276 6.750 1.00 0.00 C ATOM 2263 N PHE 371 19.568 19.265 10.928 1.00 0.00 N ATOM 2264 CA PHE 371 19.240 17.885 11.097 1.00 0.00 C ATOM 2265 C PHE 371 17.741 17.726 11.006 1.00 0.00 C ATOM 2266 O PHE 371 17.305 16.615 10.722 1.00 0.00 O ATOM 2267 CB PHE 371 19.741 17.228 12.409 1.00 0.00 C ATOM 2268 CG PHE 371 21.252 17.108 12.477 1.00 0.00 C ATOM 2269 CD1 PHE 371 22.093 16.981 11.382 1.00 0.00 C ATOM 2270 CD2 PHE 371 21.847 17.225 13.710 1.00 0.00 C ATOM 2271 CE1 PHE 371 23.463 17.081 11.519 1.00 0.00 C ATOM 2272 CE2 PHE 371 23.217 17.256 13.857 1.00 0.00 C ATOM 2273 CZ PHE 371 24.027 17.242 12.756 1.00 0.00 C ATOM 2274 N ASP 372 16.910 18.785 11.188 1.00 0.00 N ATOM 2275 CA ASP 372 15.490 18.551 11.469 1.00 0.00 C ATOM 2276 C ASP 372 14.601 19.421 10.597 1.00 0.00 C ATOM 2277 O ASP 372 13.378 19.439 10.738 1.00 0.00 O ATOM 2278 CB ASP 372 15.015 18.675 12.917 1.00 0.00 C ATOM 2279 CG ASP 372 15.600 19.931 13.442 1.00 0.00 C ATOM 2280 OD1 ASP 372 15.232 21.030 12.946 1.00 0.00 O ATOM 2281 OD2 ASP 372 16.443 19.804 14.363 1.00 0.00 O ATOM 2282 N PRO 373 15.171 20.008 9.585 1.00 0.00 N ATOM 2283 CA PRO 373 14.753 21.322 9.003 1.00 0.00 C ATOM 2284 C PRO 373 13.739 22.230 9.676 1.00 0.00 C ATOM 2285 O PRO 373 12.936 22.839 8.965 1.00 0.00 O ATOM 2286 CB PRO 373 14.283 20.987 7.559 1.00 0.00 C ATOM 2287 CG PRO 373 14.208 19.440 7.486 1.00 0.00 C ATOM 2288 CD PRO 373 15.248 18.990 8.522 1.00 0.00 C ATOM 2289 N LYS 374 13.739 22.410 11.003 1.00 0.00 N ATOM 2290 CA LYS 374 12.623 23.071 11.588 1.00 0.00 C ATOM 2291 C LYS 374 12.987 24.507 11.725 1.00 0.00 C ATOM 2292 O LYS 374 13.982 24.834 12.360 1.00 0.00 O ATOM 2293 CB LYS 374 12.301 22.519 12.972 1.00 0.00 C ATOM 2294 CG LYS 374 10.901 22.887 13.456 1.00 0.00 C ATOM 2295 CD LYS 374 10.683 22.295 14.826 1.00 0.00 C ATOM 2296 CE LYS 374 9.350 22.569 15.503 1.00 0.00 C ATOM 2297 NZ LYS 374 9.276 21.790 16.770 1.00 0.00 N ATOM 2298 N ALA 375 12.180 25.412 11.126 1.00 0.00 N ATOM 2299 CA ALA 375 12.463 26.826 11.140 1.00 0.00 C ATOM 2300 C ALA 375 12.420 27.419 12.490 1.00 0.00 C ATOM 2301 O ALA 375 13.060 28.439 12.739 1.00 0.00 O ATOM 2302 CB ALA 375 11.440 27.661 10.360 1.00 0.00 C ATOM 2303 N GLY 376 11.668 26.764 13.389 1.00 0.00 N ATOM 2304 CA GLY 376 11.586 27.149 14.756 1.00 0.00 C ATOM 2305 C GLY 376 12.978 27.201 15.268 1.00 0.00 C ATOM 2306 O GLY 376 13.267 28.094 16.035 1.00 0.00 O ATOM 2307 N TYR 377 13.864 26.304 14.821 1.00 0.00 N ATOM 2308 CA TYR 377 15.141 26.116 15.424 1.00 0.00 C ATOM 2309 C TYR 377 15.980 27.203 14.811 1.00 0.00 C ATOM 2310 O TYR 377 16.694 27.894 15.521 1.00 0.00 O ATOM 2311 CB TYR 377 15.735 24.716 15.157 1.00 0.00 C ATOM 2312 CG TYR 377 15.108 23.633 16.011 1.00 0.00 C ATOM 2313 CD1 TYR 377 13.869 23.731 16.586 1.00 0.00 C ATOM 2314 CD2 TYR 377 15.375 22.321 15.702 1.00 0.00 C ATOM 2315 CE1 TYR 377 13.299 22.525 16.871 1.00 0.00 C ATOM 2316 CE2 TYR 377 15.019 21.229 16.495 1.00 0.00 C ATOM 2317 CZ TYR 377 14.056 21.558 17.366 1.00 0.00 C ATOM 2318 OH TYR 377 13.293 20.626 18.101 1.00 0.00 H ATOM 2319 N GLU 378 15.888 27.444 13.492 1.00 0.00 N ATOM 2320 CA GLU 378 16.681 28.457 12.843 1.00 0.00 C ATOM 2321 C GLU 378 16.488 29.827 13.430 1.00 0.00 C ATOM 2322 O GLU 378 17.465 30.532 13.674 1.00 0.00 O ATOM 2323 CB GLU 378 16.374 28.551 11.344 1.00 0.00 C ATOM 2324 CG GLU 378 17.286 29.499 10.570 1.00 0.00 C ATOM 2325 CD GLU 378 16.890 29.385 9.115 1.00 0.00 C ATOM 2326 OE1 GLU 378 15.951 28.598 8.819 1.00 0.00 O ATOM 2327 OE2 GLU 378 17.514 30.089 8.281 1.00 0.00 O ATOM 2328 N ALA 379 15.222 30.234 13.684 1.00 0.00 N ATOM 2329 CA ALA 379 14.899 31.538 14.216 1.00 0.00 C ATOM 2330 C ALA 379 15.558 31.741 15.519 1.00 0.00 C ATOM 2331 O ALA 379 15.958 32.842 15.877 1.00 0.00 O ATOM 2332 CB ALA 379 13.413 31.706 14.573 1.00 0.00 C ATOM 2333 N ILE 380 15.668 30.638 16.236 1.00 0.00 N ATOM 2334 CA ILE 380 15.931 30.582 17.613 1.00 0.00 C ATOM 2335 C ILE 380 17.438 30.689 17.585 1.00 0.00 C ATOM 2336 O ILE 380 18.020 31.326 18.461 1.00 0.00 O ATOM 2337 CB ILE 380 15.243 29.296 18.010 1.00 0.00 C ATOM 2338 CG1 ILE 380 13.856 29.347 18.696 1.00 0.00 C ATOM 2339 CG2 ILE 380 16.068 28.253 18.633 1.00 0.00 C ATOM 2340 CD1 ILE 380 13.360 30.683 19.153 1.00 0.00 C ATOM 2341 N GLY 381 18.101 30.172 16.528 1.00 0.00 N ATOM 2342 CA GLY 381 19.407 30.695 16.382 1.00 0.00 C ATOM 2343 C GLY 381 19.976 31.961 15.925 1.00 0.00 C ATOM 2344 O GLY 381 21.017 32.393 16.406 1.00 0.00 O ATOM 2345 N ALA 382 19.190 32.654 15.098 1.00 0.00 N ATOM 2346 CA ALA 382 19.370 34.057 14.878 1.00 0.00 C ATOM 2347 C ALA 382 19.276 34.725 16.193 1.00 0.00 C ATOM 2348 O ALA 382 20.179 35.451 16.587 1.00 0.00 O ATOM 2349 CB ALA 382 18.285 34.672 13.990 1.00 0.00 C ATOM 2350 N GLN 383 18.195 34.449 16.931 1.00 0.00 N ATOM 2351 CA GLN 383 17.864 35.075 18.173 1.00 0.00 C ATOM 2352 C GLN 383 19.028 35.022 19.123 1.00 0.00 C ATOM 2353 O GLN 383 19.288 35.920 19.923 1.00 0.00 O ATOM 2354 CB GLN 383 16.700 34.293 18.745 1.00 0.00 C ATOM 2355 CG GLN 383 15.401 35.077 18.815 1.00 0.00 C ATOM 2356 CD GLN 383 14.318 34.106 19.251 1.00 0.00 C ATOM 2357 OE1 GLN 383 14.583 33.181 20.016 1.00 0.00 O ATOM 2358 NE2 GLN 383 13.069 34.311 18.757 1.00 0.00 N ATOM 2359 N PHE 384 19.802 33.969 18.976 1.00 0.00 N ATOM 2360 CA PHE 384 20.837 33.698 19.866 1.00 0.00 C ATOM 2361 C PHE 384 22.014 34.428 19.308 1.00 0.00 C ATOM 2362 O PHE 384 22.568 35.349 19.904 1.00 0.00 O ATOM 2363 CB PHE 384 20.978 32.201 19.878 1.00 0.00 C ATOM 2364 CG PHE 384 20.072 31.733 20.960 1.00 0.00 C ATOM 2365 CD1 PHE 384 18.813 32.110 21.258 1.00 0.00 C ATOM 2366 CD2 PHE 384 20.248 30.507 21.425 1.00 0.00 C ATOM 2367 CE1 PHE 384 18.275 31.463 22.321 1.00 0.00 C ATOM 2368 CE2 PHE 384 20.135 30.191 22.720 1.00 0.00 C ATOM 2369 CZ PHE 384 18.908 30.502 23.081 1.00 0.00 C ATOM 2370 N ARG 385 22.407 34.094 18.096 1.00 0.00 N ATOM 2371 CA ARG 385 23.686 34.500 17.638 1.00 0.00 C ATOM 2372 C ARG 385 23.257 35.476 16.616 1.00 0.00 C ATOM 2373 O ARG 385 22.665 35.026 15.641 1.00 0.00 O ATOM 2374 CB ARG 385 24.459 33.373 16.953 1.00 0.00 C ATOM 2375 CG ARG 385 25.725 33.895 16.292 1.00 0.00 C ATOM 2376 CD ARG 385 26.556 32.788 15.679 1.00 0.00 C ATOM 2377 NE ARG 385 25.923 32.363 14.393 1.00 0.00 N ATOM 2378 CZ ARG 385 26.313 31.176 13.814 1.00 0.00 C ATOM 2379 NH1 ARG 385 25.820 30.740 12.620 1.00 0.00 H ATOM 2380 NH2 ARG 385 27.407 30.520 14.358 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 170 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 47.29 57.5 40 5.3 760 ARMSMC SECONDARY STRUCTURE . . 36.74 57.1 21 5.3 394 ARMSMC SURFACE . . . . . . . . 48.02 70.4 27 7.8 348 ARMSMC BURIED . . . . . . . . 45.74 30.8 13 3.2 412 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.83 40.0 15 4.7 318 ARMSSC1 RELIABLE SIDE CHAINS . 73.83 40.0 15 4.9 307 ARMSSC1 SECONDARY STRUCTURE . . 63.50 42.9 7 4.3 161 ARMSSC1 SURFACE . . . . . . . . 74.02 40.0 10 6.5 155 ARMSSC1 BURIED . . . . . . . . 73.45 40.0 5 3.1 163 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.93 35.7 14 5.3 263 ARMSSC2 RELIABLE SIDE CHAINS . 78.50 38.5 13 6.1 213 ARMSSC2 SECONDARY STRUCTURE . . 110.87 16.7 6 4.6 131 ARMSSC2 SURFACE . . . . . . . . 80.04 40.0 10 7.2 138 ARMSSC2 BURIED . . . . . . . . 86.48 25.0 4 3.2 125 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 58.97 66.7 6 5.7 105 ARMSSC3 RELIABLE SIDE CHAINS . 42.89 80.0 5 5.7 87 ARMSSC3 SECONDARY STRUCTURE . . 54.29 66.7 3 5.4 56 ARMSSC3 SURFACE . . . . . . . . 55.67 75.0 4 5.3 75 ARMSSC3 BURIED . . . . . . . . 65.06 50.0 2 6.7 30 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.45 25.0 4 8.2 49 ARMSSC4 RELIABLE SIDE CHAINS . 83.45 25.0 4 8.2 49 ARMSSC4 SECONDARY STRUCTURE . . 88.76 50.0 2 8.7 23 ARMSSC4 SURFACE . . . . . . . . 77.77 0.0 2 5.1 39 ARMSSC4 BURIED . . . . . . . . 88.76 50.0 2 20.0 10 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.36 (Number of atoms: 21) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.36 21 5.5 381 CRMSCA CRN = ALL/NP . . . . . 0.1126 CRMSCA SECONDARY STRUCTURE . . 2.59 11 5.6 197 CRMSCA SURFACE . . . . . . . . 1.84 14 8.0 175 CRMSCA BURIED . . . . . . . . 3.16 7 3.4 206 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.47 103 5.5 1881 CRMSMC SECONDARY STRUCTURE . . 2.63 54 5.5 975 CRMSMC SURFACE . . . . . . . . 2.00 69 8.0 866 CRMSMC BURIED . . . . . . . . 3.22 34 3.3 1015 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.65 86 5.7 1504 CRMSSC RELIABLE SIDE CHAINS . 4.34 82 6.1 1336 CRMSSC SECONDARY STRUCTURE . . 5.50 40 5.1 778 CRMSSC SURFACE . . . . . . . . 3.62 57 8.1 701 CRMSSC BURIED . . . . . . . . 6.19 29 3.6 803 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.66 170 5.6 3028 CRMSALL SECONDARY STRUCTURE . . 4.16 84 5.4 1566 CRMSALL SURFACE . . . . . . . . 2.87 113 8.1 1401 CRMSALL BURIED . . . . . . . . 4.85 57 3.5 1627 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.845 1.000 0.500 21 5.5 381 ERRCA SECONDARY STRUCTURE . . 1.960 1.000 0.500 11 5.6 197 ERRCA SURFACE . . . . . . . . 1.470 1.000 0.500 14 8.0 175 ERRCA BURIED . . . . . . . . 2.596 1.000 0.500 7 3.4 206 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.937 1.000 0.500 103 5.5 1881 ERRMC SECONDARY STRUCTURE . . 1.988 1.000 0.500 54 5.5 975 ERRMC SURFACE . . . . . . . . 1.602 1.000 0.500 69 8.0 866 ERRMC BURIED . . . . . . . . 2.618 1.000 0.500 34 3.3 1015 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.600 1.000 0.500 86 5.7 1504 ERRSC RELIABLE SIDE CHAINS . 3.441 1.000 0.500 82 6.1 1336 ERRSC SECONDARY STRUCTURE . . 4.220 1.000 0.500 40 5.1 778 ERRSC SURFACE . . . . . . . . 2.951 1.000 0.500 57 8.1 701 ERRSC BURIED . . . . . . . . 4.876 1.000 0.500 29 3.6 803 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.707 1.000 0.500 170 5.6 3028 ERRALL SECONDARY STRUCTURE . . 2.949 1.000 0.500 84 5.4 1566 ERRALL SURFACE . . . . . . . . 2.238 1.000 0.500 113 8.1 1401 ERRALL BURIED . . . . . . . . 3.639 1.000 0.500 57 3.5 1627 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 8 14 18 20 21 21 381 DISTCA CA (P) 2.10 3.67 4.72 5.25 5.51 381 DISTCA CA (RMS) 0.81 1.09 1.45 1.99 2.36 DISTCA ALL (N) 33 94 121 150 165 170 3028 DISTALL ALL (P) 1.09 3.10 4.00 4.95 5.45 3028 DISTALL ALL (RMS) 0.74 1.26 1.63 2.30 3.09 DISTALL END of the results output