####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 39 ( 194), selected 39 , name T0586TS477_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 39 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS477_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 85 - 123 2.77 2.77 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 37 85 - 121 1.79 2.87 LCS_AVERAGE: 92.44 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 85 - 107 0.92 7.95 LCS_AVERAGE: 54.50 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 39 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 23 37 39 9 18 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT Q 86 Q 86 23 37 39 9 18 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT L 87 L 87 23 37 39 9 18 22 27 32 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT K 88 K 88 23 37 39 9 18 22 26 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT K 89 K 89 23 37 39 12 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT E 90 E 90 23 37 39 9 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT L 91 L 91 23 37 39 13 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT A 92 A 92 23 37 39 13 19 22 23 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT D 93 D 93 23 37 39 13 19 22 25 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT A 94 A 94 23 37 39 13 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT I 95 I 95 23 37 39 13 19 22 26 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT T 96 T 96 23 37 39 10 19 22 23 32 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT E 97 E 97 23 37 39 10 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT R 98 R 98 23 37 39 13 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT F 99 F 99 23 37 39 13 19 22 24 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT L 100 L 100 23 37 39 13 19 22 23 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT E 101 E 101 23 37 39 13 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT E 102 E 102 23 37 39 13 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT A 103 A 103 23 37 39 13 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT K 104 K 104 23 37 39 13 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT S 105 S 105 23 37 39 13 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT I 106 I 106 23 37 39 4 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT G 107 G 107 23 37 39 14 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT L 108 L 108 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT D 109 D 109 21 37 39 13 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT D 110 D 110 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT Q 111 Q 111 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT T 112 T 112 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT A 113 A 113 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT I 114 I 114 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT E 115 E 115 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT L 116 L 116 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT L 117 L 117 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT I 118 I 118 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT K 119 K 119 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT R 120 R 120 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT S 121 S 121 21 37 39 14 17 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT R 122 R 122 3 34 39 3 4 5 12 18 22 28 34 36 38 38 38 38 38 38 38 38 39 39 39 LCS_GDT N 123 N 123 3 3 39 3 3 3 3 3 4 4 5 7 9 11 14 24 26 29 29 38 39 39 39 LCS_AVERAGE LCS_A: 82.31 ( 54.50 92.44 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 19 22 27 34 36 37 37 37 38 38 38 38 38 38 38 38 39 39 39 GDT PERCENT_AT 35.90 48.72 56.41 69.23 87.18 92.31 94.87 94.87 94.87 97.44 97.44 97.44 97.44 97.44 97.44 97.44 97.44 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.53 0.85 1.26 1.64 1.73 1.79 1.79 1.79 2.05 2.05 2.05 2.05 2.05 2.05 2.05 2.05 2.77 2.77 2.77 GDT RMS_ALL_AT 4.13 7.76 8.28 2.90 2.87 2.89 2.87 2.87 2.87 2.81 2.81 2.81 2.81 2.81 2.81 2.81 2.81 2.77 2.77 2.77 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 0.990 3 0.042 0.050 1.851 85.952 52.083 LGA Q 86 Q 86 2.405 4 0.045 0.046 3.849 68.929 35.450 LGA L 87 L 87 3.046 3 0.033 0.053 4.259 61.071 35.179 LGA K 88 K 88 2.454 4 0.016 0.023 3.357 68.810 36.138 LGA K 89 K 89 2.356 4 0.058 0.060 3.288 70.952 37.090 LGA E 90 E 90 1.669 4 0.057 0.068 2.296 81.548 43.439 LGA L 91 L 91 1.448 3 0.041 0.044 2.369 79.405 47.798 LGA A 92 A 92 2.844 0 0.030 0.039 3.672 61.071 57.524 LGA D 93 D 93 2.702 3 0.041 0.042 3.329 64.881 38.690 LGA A 94 A 94 0.847 0 0.042 0.043 1.530 92.857 88.857 LGA I 95 I 95 2.223 3 0.034 0.031 3.500 68.929 39.881 LGA T 96 T 96 3.049 2 0.048 0.057 3.838 57.262 38.912 LGA E 97 E 97 2.139 4 0.053 0.065 2.550 75.119 39.735 LGA R 98 R 98 0.868 6 0.065 0.062 1.558 90.595 39.567 LGA F 99 F 99 2.307 6 0.028 0.053 3.398 72.976 31.082 LGA L 100 L 100 2.297 3 0.057 0.063 2.935 70.833 42.560 LGA E 101 E 101 1.578 4 0.028 0.030 2.082 77.143 41.481 LGA E 102 E 102 1.697 4 0.022 0.036 2.577 79.405 41.640 LGA A 103 A 103 1.313 0 0.024 0.042 2.101 88.214 83.524 LGA K 104 K 104 1.652 4 0.036 0.043 2.575 77.262 40.688 LGA S 105 S 105 2.296 1 0.092 0.092 2.775 64.881 52.778 LGA I 106 I 106 1.526 3 0.241 0.236 2.391 75.119 46.667 LGA G 107 G 107 0.423 0 0.128 0.128 0.581 92.857 92.857 LGA L 108 L 108 0.783 3 0.111 0.130 1.043 88.214 56.607 LGA D 109 D 109 1.602 3 0.032 0.071 2.101 81.548 48.869 LGA D 110 D 110 1.551 3 0.045 0.045 2.015 77.143 46.667 LGA Q 111 Q 111 1.614 4 0.040 0.048 1.732 77.143 42.381 LGA T 112 T 112 0.764 2 0.028 0.044 1.082 90.595 64.694 LGA A 113 A 113 0.639 0 0.030 0.046 1.010 88.214 88.667 LGA I 114 I 114 1.415 3 0.032 0.048 1.814 81.429 49.821 LGA E 115 E 115 0.635 4 0.052 0.057 0.896 95.238 52.381 LGA L 116 L 116 0.641 3 0.033 0.030 1.241 88.333 55.476 LGA L 117 L 117 1.530 3 0.039 0.041 1.853 79.286 48.750 LGA I 118 I 118 1.160 3 0.026 0.028 1.230 81.429 50.893 LGA K 119 K 119 0.858 4 0.045 0.051 1.400 85.952 48.254 LGA R 120 R 120 1.653 6 0.049 0.048 1.920 75.000 33.896 LGA S 121 S 121 1.567 1 0.602 0.587 5.198 53.810 48.016 LGA R 122 R 122 6.705 6 0.519 0.474 10.257 11.548 5.411 LGA N 123 N 123 12.608 3 0.335 0.385 15.138 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 39 156 156 100.00 313 194 61.98 39 SUMMARY(RMSD_GDC): 2.770 2.835 2.948 73.871 47.292 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 39 39 4.0 37 1.79 77.564 85.942 1.962 LGA_LOCAL RMSD: 1.786 Number of atoms: 37 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.873 Number of assigned atoms: 39 Std_ASGN_ATOMS RMSD: 2.770 Standard rmsd on all 39 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.630552 * X + -0.008143 * Y + 0.776105 * Z + -48.130424 Y_new = -0.641158 * X + 0.558060 * Y + 0.526769 * Z + -38.356422 Z_new = -0.437403 * X + -0.829760 * Y + 0.346665 * Z + 74.839806 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.793738 0.452709 -1.175049 [DEG: -45.4778 25.9383 -67.3254 ] ZXZ: 2.167107 1.216783 -2.656467 [DEG: 124.1661 69.7165 -152.2043 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS477_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS477_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 39 39 4.0 37 1.79 85.942 2.77 REMARK ---------------------------------------------------------- MOLECULE T0586TS477_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT N/A ATOM 415 N ASP 85 1.076 21.169 15.395 1.00 0.00 N ATOM 416 CA ASP 85 1.754 19.955 15.731 1.00 0.00 C ATOM 417 CB ASP 85 2.796 20.113 16.849 1.00 0.00 C ATOM 418 C ASP 85 0.759 18.947 16.218 1.00 0.00 C ATOM 419 O ASP 85 0.871 17.768 15.896 1.00 0.00 O ATOM 420 N GLN 86 -0.247 19.373 17.009 1.00 0.00 N ATOM 421 CA GLN 86 -1.153 18.397 17.548 1.00 0.00 C ATOM 422 CB GLN 86 -2.169 18.947 18.575 1.00 0.00 C ATOM 423 C GLN 86 -1.899 17.745 16.433 1.00 0.00 C ATOM 424 O GLN 86 -2.129 16.537 16.464 1.00 0.00 O ATOM 425 N LEU 87 -2.291 18.519 15.402 1.00 0.00 N ATOM 426 CA LEU 87 -3.007 17.933 14.305 1.00 0.00 C ATOM 427 CB LEU 87 -3.421 18.937 13.205 1.00 0.00 C ATOM 428 C LEU 87 -2.123 16.922 13.637 1.00 0.00 C ATOM 429 O LEU 87 -2.583 15.848 13.261 1.00 0.00 O ATOM 430 N LYS 88 -0.822 17.239 13.468 1.00 0.00 N ATOM 431 CA LYS 88 0.067 16.338 12.785 1.00 0.00 C ATOM 432 CB LYS 88 1.471 16.935 12.541 1.00 0.00 C ATOM 433 C LYS 88 0.190 15.067 13.572 1.00 0.00 C ATOM 434 O LYS 88 0.173 13.971 13.015 1.00 0.00 O ATOM 435 N LYS 89 0.290 15.189 14.907 1.00 0.00 N ATOM 436 CA LYS 89 0.439 14.048 15.763 1.00 0.00 C ATOM 437 CB LYS 89 0.616 14.448 17.243 1.00 0.00 C ATOM 438 C LYS 89 -0.788 13.210 15.606 1.00 0.00 C ATOM 439 O LYS 89 -0.727 11.986 15.671 1.00 0.00 O ATOM 440 N GLU 90 -1.944 13.866 15.388 1.00 0.00 N ATOM 441 CA GLU 90 -3.189 13.178 15.212 1.00 0.00 C ATOM 442 CB GLU 90 -4.348 14.146 14.906 1.00 0.00 C ATOM 443 C GLU 90 -3.060 12.303 14.004 1.00 0.00 C ATOM 444 O GLU 90 -3.514 11.162 14.001 1.00 0.00 O ATOM 445 N LEU 91 -2.417 12.821 12.940 1.00 0.00 N ATOM 446 CA LEU 91 -2.307 12.087 11.715 1.00 0.00 C ATOM 447 CB LEU 91 -1.547 12.856 10.626 1.00 0.00 C ATOM 448 C LEU 91 -1.537 10.837 11.980 1.00 0.00 C ATOM 449 O LEU 91 -1.897 9.764 11.502 1.00 0.00 O ATOM 450 N ALA 92 -0.438 10.951 12.745 1.00 0.00 N ATOM 451 CA ALA 92 0.374 9.811 13.049 1.00 0.00 C ATOM 452 CB ALA 92 1.641 10.184 13.838 1.00 0.00 C ATOM 453 C ALA 92 -0.413 8.854 13.887 1.00 0.00 C ATOM 454 O ALA 92 -0.393 7.645 13.663 1.00 0.00 O ATOM 455 N ASP 93 -1.145 9.392 14.878 1.00 0.00 N ATOM 456 CA ASP 93 -1.878 8.565 15.788 1.00 0.00 C ATOM 457 CB ASP 93 -2.564 9.358 16.913 1.00 0.00 C ATOM 458 C ASP 93 -2.937 7.841 15.026 1.00 0.00 C ATOM 459 O ASP 93 -3.237 6.689 15.326 1.00 0.00 O ATOM 460 N ALA 94 -3.528 8.501 14.013 1.00 0.00 N ATOM 461 CA ALA 94 -4.597 7.902 13.271 1.00 0.00 C ATOM 462 CB ALA 94 -5.147 8.831 12.174 1.00 0.00 C ATOM 463 C ALA 94 -4.102 6.663 12.599 1.00 0.00 C ATOM 464 O ALA 94 -4.777 5.636 12.612 1.00 0.00 O ATOM 465 N ILE 95 -2.901 6.719 11.994 1.00 0.00 N ATOM 466 CA ILE 95 -2.407 5.571 11.295 1.00 0.00 C ATOM 467 CB ILE 95 -1.158 5.841 10.498 1.00 0.00 C ATOM 468 C ILE 95 -2.148 4.472 12.283 1.00 0.00 C ATOM 469 O ILE 95 -2.479 3.315 12.039 1.00 0.00 O ATOM 470 N THR 96 -1.563 4.821 13.442 1.00 0.00 N ATOM 471 CA THR 96 -1.223 3.836 14.430 1.00 0.00 C ATOM 472 CB THR 96 -0.578 4.459 15.635 1.00 0.00 C ATOM 473 C THR 96 -2.477 3.157 14.875 1.00 0.00 C ATOM 474 O THR 96 -2.518 1.936 15.026 1.00 0.00 O ATOM 475 N GLU 97 -3.544 3.944 15.087 1.00 0.00 N ATOM 476 CA GLU 97 -4.793 3.410 15.541 1.00 0.00 C ATOM 477 CB GLU 97 -5.842 4.503 15.804 1.00 0.00 C ATOM 478 C GLU 97 -5.335 2.491 14.497 1.00 0.00 C ATOM 479 O GLU 97 -5.910 1.453 14.818 1.00 0.00 O ATOM 480 N ARG 98 -5.160 2.847 13.211 1.00 0.00 N ATOM 481 CA ARG 98 -5.708 2.061 12.146 1.00 0.00 C ATOM 482 CB ARG 98 -5.431 2.666 10.760 1.00 0.00 C ATOM 483 C ARG 98 -5.110 0.689 12.167 1.00 0.00 C ATOM 484 O ARG 98 -5.829 -0.299 12.036 1.00 0.00 O ATOM 485 N PHE 99 -3.779 0.588 12.359 1.00 0.00 N ATOM 486 CA PHE 99 -3.132 -0.694 12.327 1.00 0.00 C ATOM 487 CB PHE 99 -1.611 -0.623 12.528 1.00 0.00 C ATOM 488 C PHE 99 -3.681 -1.544 13.418 1.00 0.00 C ATOM 489 O PHE 99 -3.997 -2.717 13.214 1.00 0.00 O ATOM 490 N LEU 100 -3.824 -0.967 14.617 1.00 0.00 N ATOM 491 CA LEU 100 -4.339 -1.745 15.693 1.00 0.00 C ATOM 492 CB LEU 100 -4.463 -0.956 17.000 1.00 0.00 C ATOM 493 C LEU 100 -5.717 -2.204 15.350 1.00 0.00 C ATOM 494 O LEU 100 -6.076 -3.350 15.612 1.00 0.00 O ATOM 495 N GLU 101 -6.534 -1.325 14.746 1.00 0.00 N ATOM 496 CA GLU 101 -7.888 -1.720 14.513 1.00 0.00 C ATOM 497 CB GLU 101 -8.760 -0.593 13.932 1.00 0.00 C ATOM 498 C GLU 101 -7.919 -2.898 13.595 1.00 0.00 C ATOM 499 O GLU 101 -8.676 -3.840 13.822 1.00 0.00 O ATOM 500 N GLU 102 -7.089 -2.900 12.533 1.00 0.00 N ATOM 501 CA GLU 102 -7.103 -4.001 11.617 1.00 0.00 C ATOM 502 CB GLU 102 -6.299 -3.744 10.325 1.00 0.00 C ATOM 503 C GLU 102 -6.598 -5.237 12.305 1.00 0.00 C ATOM 504 O GLU 102 -7.074 -6.338 12.029 1.00 0.00 O ATOM 505 N ALA 103 -5.624 -5.091 13.226 1.00 0.00 N ATOM 506 CA ALA 103 -5.070 -6.219 13.925 1.00 0.00 C ATOM 507 CB ALA 103 -3.978 -5.820 14.931 1.00 0.00 C ATOM 508 C ALA 103 -6.167 -6.894 14.691 1.00 0.00 C ATOM 509 O ALA 103 -6.282 -8.118 14.668 1.00 0.00 O ATOM 510 N LYS 104 -7.022 -6.118 15.382 1.00 0.00 N ATOM 511 CA LYS 104 -8.090 -6.714 16.134 1.00 0.00 C ATOM 512 CB LYS 104 -8.911 -5.699 16.949 1.00 0.00 C ATOM 513 C LYS 104 -9.006 -7.398 15.170 1.00 0.00 C ATOM 514 O LYS 104 -9.548 -8.465 15.455 1.00 0.00 O ATOM 515 N SER 105 -9.197 -6.787 13.986 1.00 0.00 N ATOM 516 CA SER 105 -10.061 -7.341 12.986 1.00 0.00 C ATOM 517 CB SER 105 -10.181 -6.445 11.745 1.00 0.00 C ATOM 518 C SER 105 -9.474 -8.646 12.553 1.00 0.00 C ATOM 519 O SER 105 -10.196 -9.580 12.206 1.00 0.00 O ATOM 520 N ILE 106 -8.134 -8.736 12.589 1.00 0.00 N ATOM 521 CA ILE 106 -7.419 -9.920 12.216 1.00 0.00 C ATOM 522 CB ILE 106 -5.932 -9.777 12.320 1.00 0.00 C ATOM 523 C ILE 106 -7.851 -10.993 13.155 1.00 0.00 C ATOM 524 O ILE 106 -7.919 -12.162 12.781 1.00 0.00 O ATOM 525 N GLY 107 -8.173 -10.619 14.408 1.00 0.00 N ATOM 526 CA GLY 107 -8.551 -11.615 15.363 1.00 0.00 C ATOM 527 C GLY 107 -7.615 -11.533 16.523 1.00 0.00 C ATOM 528 O GLY 107 -7.767 -12.270 17.497 1.00 0.00 O ATOM 529 N LEU 108 -6.603 -10.644 16.442 1.00 0.00 N ATOM 530 CA LEU 108 -5.729 -10.491 17.570 1.00 0.00 C ATOM 531 CB LEU 108 -4.462 -9.678 17.263 1.00 0.00 C ATOM 532 C LEU 108 -6.512 -9.782 18.630 1.00 0.00 C ATOM 533 O LEU 108 -7.172 -8.775 18.366 1.00 0.00 O ATOM 534 N ASP 109 -6.440 -10.293 19.875 1.00 0.00 N ATOM 535 CA ASP 109 -7.219 -9.780 20.965 1.00 0.00 C ATOM 536 CB ASP 109 -7.205 -10.684 22.212 1.00 0.00 C ATOM 537 C ASP 109 -6.690 -8.450 21.398 1.00 0.00 C ATOM 538 O ASP 109 -5.517 -8.131 21.223 1.00 0.00 O ATOM 539 N ASP 110 -7.589 -7.628 21.970 1.00 0.00 N ATOM 540 CA ASP 110 -7.282 -6.318 22.460 1.00 0.00 C ATOM 541 CB ASP 110 -8.564 -5.599 22.920 1.00 0.00 C ATOM 542 C ASP 110 -6.367 -6.454 23.637 1.00 0.00 C ATOM 543 O ASP 110 -5.385 -5.727 23.769 1.00 0.00 O ATOM 544 N GLN 111 -6.674 -7.422 24.518 1.00 0.00 N ATOM 545 CA GLN 111 -5.927 -7.604 25.724 1.00 0.00 C ATOM 546 CB GLN 111 -6.606 -8.619 26.673 1.00 0.00 C ATOM 547 C GLN 111 -4.526 -8.010 25.394 1.00 0.00 C ATOM 548 O GLN 111 -3.585 -7.557 26.040 1.00 0.00 O ATOM 549 N THR 112 -4.351 -8.880 24.381 1.00 0.00 N ATOM 550 CA THR 112 -3.040 -9.323 23.993 1.00 0.00 C ATOM 551 CB THR 112 -3.069 -10.496 23.050 1.00 0.00 C ATOM 552 C THR 112 -2.284 -8.199 23.349 1.00 0.00 C ATOM 553 O THR 112 -1.082 -8.043 23.560 1.00 0.00 O ATOM 554 N ALA 113 -2.981 -7.374 22.547 1.00 0.00 N ATOM 555 CA ALA 113 -2.348 -6.297 21.844 1.00 0.00 C ATOM 556 CB ALA 113 -3.332 -5.491 20.982 1.00 0.00 C ATOM 557 C ALA 113 -1.753 -5.348 22.834 1.00 0.00 C ATOM 558 O ALA 113 -0.636 -4.871 22.641 1.00 0.00 O ATOM 559 N ILE 114 -2.467 -5.059 23.937 1.00 0.00 N ATOM 560 CA ILE 114 -1.960 -4.087 24.857 1.00 0.00 C ATOM 561 CB ILE 114 -2.884 -3.775 25.999 1.00 0.00 C ATOM 562 C ILE 114 -0.681 -4.578 25.440 1.00 0.00 C ATOM 563 O ILE 114 0.283 -3.822 25.549 1.00 0.00 O ATOM 564 N GLU 115 -0.630 -5.865 25.824 1.00 0.00 N ATOM 565 CA GLU 115 0.560 -6.341 26.454 1.00 0.00 C ATOM 566 CB GLU 115 0.461 -7.797 26.927 1.00 0.00 C ATOM 567 C GLU 115 1.673 -6.246 25.475 1.00 0.00 C ATOM 568 O GLU 115 2.778 -5.833 25.818 1.00 0.00 O ATOM 569 N LEU 116 1.391 -6.595 24.210 1.00 0.00 N ATOM 570 CA LEU 116 2.408 -6.581 23.209 1.00 0.00 C ATOM 571 CB LEU 116 1.890 -7.077 21.853 1.00 0.00 C ATOM 572 C LEU 116 2.910 -5.177 23.058 1.00 0.00 C ATOM 573 O LEU 116 4.113 -4.953 22.957 1.00 0.00 O ATOM 574 N LEU 117 2.000 -4.183 23.070 1.00 0.00 N ATOM 575 CA LEU 117 2.421 -2.824 22.898 1.00 0.00 C ATOM 576 CB LEU 117 1.223 -1.839 22.926 1.00 0.00 C ATOM 577 C LEU 117 3.354 -2.466 24.002 1.00 0.00 C ATOM 578 O LEU 117 4.443 -1.949 23.759 1.00 0.00 O ATOM 579 N ILE 118 2.965 -2.755 25.253 1.00 0.00 N ATOM 580 CA ILE 118 3.788 -2.331 26.347 1.00 0.00 C ATOM 581 CB ILE 118 3.149 -2.553 27.686 1.00 0.00 C ATOM 582 C ILE 118 5.100 -3.035 26.281 1.00 0.00 C ATOM 583 O ILE 118 6.151 -2.437 26.514 1.00 0.00 O ATOM 584 N LYS 119 5.072 -4.330 25.947 1.00 0.00 N ATOM 585 CA LYS 119 6.280 -5.091 25.878 1.00 0.00 C ATOM 586 CB LYS 119 5.993 -6.518 25.378 1.00 0.00 C ATOM 587 C LYS 119 7.163 -4.445 24.857 1.00 0.00 C ATOM 588 O LYS 119 8.347 -4.215 25.096 1.00 0.00 O ATOM 589 N ARG 120 6.582 -4.108 23.694 1.00 0.00 N ATOM 590 CA ARG 120 7.344 -3.589 22.599 1.00 0.00 C ATOM 591 CB ARG 120 6.464 -3.353 21.366 1.00 0.00 C ATOM 592 C ARG 120 7.993 -2.298 22.969 1.00 0.00 C ATOM 593 O ARG 120 9.193 -2.125 22.756 1.00 0.00 O ATOM 594 N SER 121 7.239 -1.346 23.550 1.00 0.00 N ATOM 595 CA SER 121 7.921 -0.119 23.827 1.00 0.00 C ATOM 596 CB SER 121 8.312 0.673 22.569 1.00 0.00 C ATOM 597 C SER 121 7.065 0.792 24.631 1.00 0.00 C ATOM 598 O SER 121 5.908 0.507 24.940 1.00 0.00 O ATOM 599 N ARG 122 7.673 1.926 25.018 1.00 0.00 N ATOM 600 CA ARG 122 7.013 2.955 25.751 1.00 0.00 C ATOM 601 CB ARG 122 7.856 3.441 26.953 1.00 0.00 C ATOM 602 C ARG 122 6.827 4.089 24.797 1.00 0.00 C ATOM 603 O ARG 122 7.766 4.831 24.506 1.00 0.00 O ATOM 604 N ASN 123 5.600 4.250 24.269 1.00 0.00 N ATOM 605 CA ASN 123 5.372 5.312 23.336 1.00 0.00 C ATOM 606 CB ASN 123 5.339 4.865 21.863 1.00 0.00 C ATOM 607 C ASN 123 4.059 5.933 23.676 1.00 0.00 C ATOM 608 O ASN 123 3.384 5.513 24.612 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 194 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 32.54 90.8 76 100.0 76 ARMSMC SECONDARY STRUCTURE . . 23.88 96.9 64 100.0 64 ARMSMC SURFACE . . . . . . . . 33.42 90.3 72 100.0 72 ARMSMC BURIED . . . . . . . . 3.19 100.0 4 100.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 34 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 24 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.77 (Number of atoms: 39) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.77 39 100.0 39 CRMSCA CRN = ALL/NP . . . . . 0.0710 CRMSCA SECONDARY STRUCTURE . . 1.99 32 100.0 32 CRMSCA SURFACE . . . . . . . . 2.83 37 100.0 37 CRMSCA BURIED . . . . . . . . 1.04 2 100.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.95 194 100.0 194 CRMSMC SECONDARY STRUCTURE . . 2.03 160 100.0 160 CRMSMC SURFACE . . . . . . . . 3.02 184 100.0 184 CRMSMC BURIED . . . . . . . . 1.05 10 100.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.35 38 24.2 157 CRMSSC RELIABLE SIDE CHAINS . 3.35 38 27.3 139 CRMSSC SECONDARY STRUCTURE . . 2.71 32 24.6 130 CRMSSC SURFACE . . . . . . . . 3.42 36 23.2 155 CRMSSC BURIED . . . . . . . . 1.56 2 100.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.95 194 62.0 313 CRMSALL SECONDARY STRUCTURE . . 2.03 160 62.0 258 CRMSALL SURFACE . . . . . . . . 3.02 184 60.7 303 CRMSALL BURIED . . . . . . . . 1.05 10 100.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.060 1.000 0.500 39 100.0 39 ERRCA SECONDARY STRUCTURE . . 1.772 1.000 0.500 32 100.0 32 ERRCA SURFACE . . . . . . . . 2.116 1.000 0.500 37 100.0 37 ERRCA BURIED . . . . . . . . 1.015 1.000 0.500 2 100.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.115 1.000 0.500 194 100.0 194 ERRMC SECONDARY STRUCTURE . . 1.774 1.000 0.500 160 100.0 160 ERRMC SURFACE . . . . . . . . 2.178 1.000 0.500 184 100.0 184 ERRMC BURIED . . . . . . . . 0.962 1.000 0.500 10 100.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.729 1.000 0.500 38 24.2 157 ERRSC RELIABLE SIDE CHAINS . 2.729 1.000 0.500 38 27.3 139 ERRSC SECONDARY STRUCTURE . . 2.450 1.000 0.500 32 24.6 130 ERRSC SURFACE . . . . . . . . 2.801 1.000 0.500 36 23.2 155 ERRSC BURIED . . . . . . . . 1.433 1.000 0.500 2 100.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.115 1.000 0.500 194 62.0 313 ERRALL SECONDARY STRUCTURE . . 1.774 1.000 0.500 160 62.0 258 ERRALL SURFACE . . . . . . . . 2.178 1.000 0.500 184 60.7 303 ERRALL BURIED . . . . . . . . 0.962 1.000 0.500 10 100.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 11 26 33 37 38 39 39 DISTCA CA (P) 28.21 66.67 84.62 94.87 97.44 39 DISTCA CA (RMS) 0.72 1.35 1.69 1.93 2.10 DISTCA ALL (N) 54 124 163 185 190 194 313 DISTALL ALL (P) 17.25 39.62 52.08 59.11 60.70 313 DISTALL ALL (RMS) 0.69 1.29 1.66 1.99 2.32 DISTALL END of the results output