####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 39 ( 217), selected 39 , name T0586TS470_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 39 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS470_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 85 - 123 2.11 2.11 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 85 - 122 1.62 2.18 LCS_AVERAGE: 96.98 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 85 - 109 0.87 5.32 LCS_AVERAGE: 60.09 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 39 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 25 38 39 14 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT Q 86 Q 86 25 38 39 14 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT L 87 L 87 25 38 39 13 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT K 88 K 88 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT K 89 K 89 25 38 39 13 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT E 90 E 90 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT L 91 L 91 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT A 92 A 92 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT D 93 D 93 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT A 94 A 94 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT I 95 I 95 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT T 96 T 96 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT E 97 E 97 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT R 98 R 98 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT F 99 F 99 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT L 100 L 100 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT E 101 E 101 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT E 102 E 102 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT A 103 A 103 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT K 104 K 104 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT S 105 S 105 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT I 106 I 106 25 38 39 3 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT G 107 G 107 25 38 39 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT L 108 L 108 25 38 39 16 22 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT D 109 D 109 25 38 39 16 18 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT D 110 D 110 22 38 39 16 18 23 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT Q 111 Q 111 22 38 39 16 18 23 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT T 112 T 112 22 38 39 16 18 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT A 113 A 113 22 38 39 16 18 23 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT I 114 I 114 22 38 39 16 18 23 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT E 115 E 115 22 38 39 16 18 23 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT L 116 L 116 22 38 39 16 18 23 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT L 117 L 117 22 38 39 16 18 23 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT I 118 I 118 22 38 39 16 18 23 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT K 119 K 119 22 38 39 16 18 23 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT R 120 R 120 22 38 39 16 18 22 29 36 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT S 121 S 121 22 38 39 16 18 23 30 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT R 122 R 122 22 38 39 16 18 23 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 LCS_GDT N 123 N 123 3 31 39 3 4 4 4 4 4 4 12 17 27 30 31 39 39 39 39 39 39 39 39 LCS_AVERAGE LCS_A: 85.69 ( 60.09 96.98 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 17 23 24 33 37 38 38 38 38 38 38 38 39 39 39 39 39 39 39 39 GDT PERCENT_AT 43.59 58.97 61.54 84.62 94.87 97.44 97.44 97.44 97.44 97.44 97.44 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.28 0.51 0.66 1.45 1.58 1.62 1.62 1.62 1.62 1.62 1.62 1.62 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 GDT RMS_ALL_AT 6.75 6.82 6.16 2.39 2.19 2.18 2.18 2.18 2.18 2.18 2.18 2.18 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 # Checking swapping # possible swapping detected: E 97 E 97 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 1.973 2 0.023 0.083 3.383 72.976 49.881 LGA Q 86 Q 86 2.494 3 0.043 0.658 5.738 68.810 38.519 LGA L 87 L 87 1.809 3 0.082 0.083 2.721 77.143 45.714 LGA K 88 K 88 1.600 3 0.054 0.058 3.481 75.238 46.190 LGA K 89 K 89 2.410 2 0.055 0.699 6.439 70.833 41.323 LGA E 90 E 90 1.410 3 0.016 0.154 3.021 85.952 50.952 LGA L 91 L 91 1.363 1 0.036 0.701 2.115 81.548 67.083 LGA A 92 A 92 2.196 0 0.601 0.599 4.557 65.119 58.381 LGA D 93 D 93 1.692 3 0.027 0.024 2.301 79.286 47.738 LGA A 94 A 94 1.139 0 0.074 0.081 1.810 83.690 81.524 LGA I 95 I 95 1.954 3 0.032 0.031 2.923 75.000 44.643 LGA T 96 T 96 1.754 2 0.017 0.030 2.253 77.143 53.333 LGA E 97 E 97 1.094 0 0.037 0.905 4.803 88.214 64.603 LGA R 98 R 98 1.325 4 0.031 0.686 2.051 81.548 48.788 LGA F 99 F 99 1.965 6 0.021 0.026 2.717 75.000 32.468 LGA L 100 L 100 1.559 3 0.024 0.026 2.175 79.286 47.738 LGA E 101 E 101 1.266 3 0.008 0.082 2.497 83.690 52.487 LGA E 102 E 102 1.473 0 0.060 0.339 2.391 81.548 74.021 LGA A 103 A 103 1.159 0 0.032 0.036 1.881 88.214 85.143 LGA K 104 K 104 1.524 3 0.048 0.089 2.865 79.405 48.836 LGA S 105 S 105 1.932 1 0.016 0.022 2.552 72.976 58.175 LGA I 106 I 106 1.300 3 0.060 0.065 1.749 79.286 48.750 LGA G 107 G 107 0.814 0 0.042 0.042 1.852 86.190 86.190 LGA L 108 L 108 0.872 0 0.126 0.963 4.284 85.952 77.321 LGA D 109 D 109 1.645 2 0.055 0.688 2.822 77.143 53.810 LGA D 110 D 110 1.706 4 0.038 0.038 1.727 75.000 37.500 LGA Q 111 Q 111 1.760 2 0.100 0.280 3.112 75.000 52.540 LGA T 112 T 112 0.864 2 0.033 0.049 1.183 92.976 64.762 LGA A 113 A 113 0.495 0 0.024 0.042 1.178 92.976 92.476 LGA I 114 I 114 1.714 3 0.045 0.043 2.444 79.286 47.738 LGA E 115 E 115 0.915 2 0.056 0.673 1.484 95.238 69.471 LGA L 116 L 116 0.857 1 0.041 0.241 1.375 88.333 74.702 LGA L 117 L 117 1.614 2 0.009 0.126 2.732 75.000 53.750 LGA I 118 I 118 1.060 3 0.030 0.031 1.138 85.952 53.155 LGA K 119 K 119 1.089 3 0.022 0.615 1.916 81.786 53.492 LGA R 120 R 120 2.577 6 0.068 0.087 3.199 59.286 26.104 LGA S 121 S 121 2.438 1 0.128 0.132 3.188 61.071 51.508 LGA R 122 R 122 1.717 10 - - 1.717 18.214 6.623 LGA N 123 N 123 9.215 7 - - 9.215 0.357 0.179 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 39 156 150 96.15 313 217 69.33 39 SUMMARY(RMSD_GDC): 2.107 1.667 2.056 75.684 53.528 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 39 39 4.0 38 1.62 85.256 90.854 2.210 LGA_LOCAL RMSD: 1.619 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.176 Number of assigned atoms: 39 Std_ASGN_ATOMS RMSD: 2.107 Standard rmsd on all 39 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.039314 * X + -0.997910 * Y + 0.051285 * Z + 65.313568 Y_new = -0.165960 * X + -0.057133 * Y + -0.984476 * Z + 38.554802 Z_new = 0.985349 * X + 0.030192 * Y + -0.167859 * Z + -6.302165 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.338197 -1.399406 2.963630 [DEG: -76.6731 -80.1800 169.8035 ] ZXZ: 0.052047 1.739454 1.540165 [DEG: 2.9821 99.6634 88.2449 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS470_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS470_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 39 39 4.0 38 1.62 90.854 2.11 REMARK ---------------------------------------------------------- MOLECULE T0586TS470_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT N/A ATOM 85 N ASP 85 2.876 20.409 15.057 1.00 2.42 N ATOM 85 CA ASP 85 3.222 19.218 15.790 1.00 2.42 C ATOM 85 C ASP 85 1.968 18.435 16.235 1.00 2.42 C ATOM 85 O ASP 85 1.949 17.196 16.129 1.00 2.42 O ATOM 85 CB ASP 85 4.046 19.593 17.022 1.00 2.42 C ATOM 85 CG ASP 85 5.411 20.104 16.673 1.00 2.42 C ATOM 86 N GLN 86 0.939 19.156 16.725 1.00 2.43 N ATOM 86 CA GLN 86 -0.302 18.513 17.181 1.00 2.43 C ATOM 86 C GLN 86 -1.056 17.914 16.026 1.00 2.43 C ATOM 86 O GLN 86 -1.574 16.819 16.129 1.00 2.43 O ATOM 86 CB GLN 86 -1.237 19.508 17.864 1.00 2.43 C ATOM 86 CG GLN 86 -0.822 19.835 19.265 1.00 2.43 C ATOM 87 N LEU 87 -1.146 18.644 14.922 1.00 2.29 N ATOM 87 CA LEU 87 -1.764 18.077 13.728 1.00 2.29 C ATOM 87 C LEU 87 -0.994 16.826 13.238 1.00 2.29 C ATOM 87 O LEU 87 -1.585 15.904 12.660 1.00 2.29 O ATOM 87 CB LEU 87 -1.852 19.114 12.624 1.00 2.29 C ATOM 88 N LYS 88 0.320 16.818 13.450 1.00 2.43 N ATOM 88 CA LYS 88 1.150 15.686 13.011 1.00 2.43 C ATOM 88 C LYS 88 0.855 14.447 13.836 1.00 2.43 C ATOM 88 O LYS 88 0.579 13.365 13.301 1.00 2.43 O ATOM 88 CB LYS 88 2.639 16.013 13.110 1.00 2.43 C ATOM 88 CG LYS 88 3.491 14.947 12.472 1.00 2.43 C ATOM 89 N LYS 89 0.904 14.631 15.154 1.00 2.57 N ATOM 89 CA LYS 89 0.463 13.606 16.110 1.00 2.57 C ATOM 89 C LYS 89 -0.904 13.069 15.811 1.00 2.57 C ATOM 89 O LYS 89 -1.149 11.886 16.036 1.00 2.57 O ATOM 89 CB LYS 89 0.484 14.130 17.533 1.00 2.57 C ATOM 89 CG LYS 89 1.893 14.558 17.934 1.00 2.57 C ATOM 89 CD LYS 89 2.042 14.878 19.399 1.00 2.57 C ATOM 90 N GLU 90 -1.799 13.907 15.311 1.00 2.63 N ATOM 90 CA GLU 90 -3.153 13.448 14.983 1.00 2.63 C ATOM 90 C GLU 90 -3.169 12.541 13.779 1.00 2.63 C ATOM 90 O GLU 90 -3.898 11.550 13.764 1.00 2.63 O ATOM 90 CB GLU 90 -4.174 14.598 14.819 1.00 2.63 C ATOM 90 CG GLU 90 -4.732 15.111 16.189 1.00 2.63 C ATOM 91 N LEU 91 -2.368 12.883 12.771 1.00 2.70 N ATOM 91 CA LEU 91 -2.183 12.015 11.609 1.00 2.70 C ATOM 91 C LEU 91 -1.719 10.635 12.076 1.00 2.70 C ATOM 91 O LEU 91 -2.196 9.628 11.609 1.00 2.70 O ATOM 91 CB LEU 91 -1.134 12.622 10.662 1.00 2.70 C ATOM 91 CG LEU 91 -0.668 11.684 9.488 1.00 2.70 C ATOM 91 CD1 LEU 91 0.422 12.398 8.642 1.00 2.70 C ATOM 92 N ALA 92 0.895 8.523 13.086 1.00 2.82 N ATOM 92 CA ALA 92 -0.081 9.473 13.592 1.00 2.82 C ATOM 92 C ALA 92 -1.091 8.714 14.427 1.00 2.82 C ATOM 92 O ALA 92 -1.138 7.488 14.374 1.00 2.82 O ATOM 92 CB ALA 92 -0.804 10.175 12.439 1.00 2.82 C ATOM 93 N ASP 93 -1.901 9.403 15.206 1.00 2.83 N ATOM 93 CA ASP 93 -2.871 8.768 16.093 1.00 2.83 C ATOM 93 C ASP 93 -3.866 7.931 15.317 1.00 2.83 C ATOM 93 O ASP 93 -4.195 6.808 15.706 1.00 2.83 O ATOM 93 CB ASP 93 -3.620 9.772 16.956 1.00 2.83 C ATOM 94 N ALA 94 -4.420 8.597 14.177 1.00 2.91 N ATOM 94 CA ALA 94 -5.303 7.992 13.190 1.00 2.91 C ATOM 94 C ALA 94 -4.683 6.706 12.659 1.00 2.91 C ATOM 94 O ALA 94 -5.312 5.641 12.690 1.00 2.91 O ATOM 94 CB ALA 94 -5.560 8.965 12.039 1.00 2.91 C ATOM 95 N ILE 95 -3.325 6.728 12.411 1.00 2.95 N ATOM 95 CA ILE 95 -2.713 5.548 11.746 1.00 2.95 C ATOM 95 C ILE 95 -2.548 4.445 12.785 1.00 2.95 C ATOM 95 O ILE 95 -2.731 3.277 12.506 1.00 2.95 O ATOM 95 CB ILE 95 -1.345 5.930 11.175 1.00 2.95 C ATOM 96 N THR 96 -2.382 4.841 14.142 1.00 3.02 N ATOM 96 CA THR 96 -2.279 3.860 15.213 1.00 3.02 C ATOM 96 C THR 96 -3.600 3.133 15.388 1.00 3.02 C ATOM 96 O THR 96 -3.631 1.919 15.610 1.00 3.02 O ATOM 96 CB THR 96 -1.891 4.538 16.526 1.00 3.02 C ATOM 97 N GLU 97 -4.727 4.036 15.384 1.00 3.03 N ATOM 97 CA GLU 97 -6.083 3.525 15.529 1.00 3.03 C ATOM 97 C GLU 97 -6.380 2.522 14.416 1.00 3.03 C ATOM 97 O GLU 97 -6.997 1.484 14.653 1.00 3.03 O ATOM 97 CB GLU 97 -7.091 4.681 15.491 1.00 3.03 C ATOM 97 CG GLU 97 -7.069 5.549 16.743 1.00 3.03 C ATOM 97 CD GLU 97 -7.955 6.775 16.635 1.00 3.03 C ATOM 97 OE1 GLU 97 -8.642 7.139 17.589 1.00 3.03 O ATOM 97 OE2 GLU 97 -7.934 7.422 15.477 1.00 3.03 O ATOM 98 N ARG 98 -6.038 2.892 13.193 1.00 3.13 N ATOM 98 CA ARG 98 -6.280 2.016 12.052 1.00 3.13 C ATOM 98 C ARG 98 -5.508 0.670 12.077 1.00 3.13 C ATOM 98 O ARG 98 -6.058 -0.351 11.703 1.00 3.13 O ATOM 98 CB ARG 98 -5.919 2.799 10.786 1.00 3.13 C ATOM 98 CG ARG 98 -6.125 2.081 9.452 1.00 3.13 C ATOM 98 CD ARG 98 -5.188 2.636 8.403 1.00 3.13 C ATOM 99 N PHE 99 -4.243 0.681 12.519 1.00 3.20 N ATOM 99 CA PHE 99 -3.418 -0.514 12.671 1.00 3.20 C ATOM 99 C PHE 99 -4.036 -1.428 13.716 1.00 3.20 C ATOM 99 O PHE 99 -4.140 -2.636 13.513 1.00 3.20 O ATOM 99 CB PHE 99 -2.004 -0.132 13.090 1.00 3.20 C ATOM 100 N LEU 100 -4.438 -0.789 14.874 1.00 2.99 N ATOM 100 CA LEU 100 -5.017 -1.575 15.961 1.00 2.99 C ATOM 100 C LEU 100 -6.315 -2.232 15.557 1.00 2.99 C ATOM 100 O LEU 100 -6.676 -3.341 16.012 1.00 2.99 O ATOM 100 CB LEU 100 -5.196 -0.760 17.218 1.00 2.99 C ATOM 101 N GLU 101 -7.214 -1.468 14.807 1.00 3.21 N ATOM 101 CA GLU 101 -8.474 -2.008 14.292 1.00 3.21 C ATOM 101 C GLU 101 -8.213 -3.108 13.246 1.00 3.21 C ATOM 101 O GLU 101 -8.880 -4.157 13.274 1.00 3.21 O ATOM 101 CB GLU 101 -9.313 -0.884 13.681 1.00 3.21 C ATOM 101 CG GLU 101 -9.874 0.044 14.703 1.00 3.21 C ATOM 102 N GLU 102 -7.206 -3.099 12.552 1.00 3.20 N ATOM 102 CA GLU 102 -6.866 -4.069 11.522 1.00 3.20 C ATOM 102 C GLU 102 -6.573 -5.458 12.090 1.00 3.20 C ATOM 102 O GLU 102 -6.766 -6.456 11.406 1.00 3.20 O ATOM 102 CB GLU 102 -5.659 -3.553 10.748 1.00 3.20 C ATOM 102 CG GLU 102 -5.422 -4.202 9.410 1.00 3.20 C ATOM 102 CD GLU 102 -4.053 -3.864 8.843 1.00 3.20 C ATOM 102 OE1 GLU 102 -3.528 -2.766 9.141 1.00 3.20 O ATOM 102 OE2 GLU 102 -3.497 -4.701 8.094 1.00 3.20 O ATOM 103 N ALA 103 -5.490 -5.154 13.301 1.00 3.26 N ATOM 103 CA ALA 103 -4.976 -6.244 14.124 1.00 3.26 C ATOM 103 C ALA 103 -6.126 -6.994 14.783 1.00 3.26 C ATOM 103 O ALA 103 -6.131 -8.230 14.805 1.00 3.26 O ATOM 103 CB ALA 103 -3.995 -5.701 15.193 1.00 3.26 C ATOM 104 N LYS 104 -7.080 -6.229 15.428 1.00 3.43 N ATOM 104 CA LYS 104 -8.232 -6.826 16.084 1.00 3.43 C ATOM 104 C LYS 104 -9.077 -7.644 15.114 1.00 3.43 C ATOM 104 O LYS 104 -9.447 -8.781 15.408 1.00 3.43 O ATOM 104 CB LYS 104 -9.075 -5.725 16.721 1.00 3.43 C ATOM 104 CG LYS 104 -10.270 -6.227 17.446 1.00 3.43 C ATOM 105 N SER 105 -9.242 -7.125 13.767 1.00 3.50 N ATOM 105 CA SER 105 -9.981 -7.839 12.735 1.00 3.50 C ATOM 105 C SER 105 -9.320 -9.155 12.318 1.00 3.50 C ATOM 105 O SER 105 -9.994 -10.056 11.803 1.00 3.50 O ATOM 105 CB SER 105 -10.225 -6.941 11.517 1.00 3.50 C ATOM 106 N ILE 106 -7.813 -8.939 12.405 1.00 3.54 N ATOM 106 CA ILE 106 -7.004 -10.065 11.950 1.00 3.54 C ATOM 106 C ILE 106 -7.084 -11.226 12.944 1.00 3.54 C ATOM 106 O ILE 106 -6.448 -12.273 12.745 1.00 3.54 O ATOM 106 CB ILE 106 -5.534 -9.648 11.785 1.00 3.54 C ATOM 107 N GLY 107 -7.942 -10.952 14.221 1.00 3.61 N ATOM 107 CA GLY 107 -7.890 -11.897 15.320 1.00 3.61 C ATOM 107 C GLY 107 -6.656 -11.769 16.191 1.00 3.61 C ATOM 107 O GLY 107 -6.369 -12.645 17.007 1.00 3.61 O ATOM 108 N LEU 108 -6.331 -10.557 16.533 1.00 3.68 N ATOM 108 CA LEU 108 -5.377 -10.411 17.647 1.00 3.68 C ATOM 108 C LEU 108 -6.188 -10.026 18.862 1.00 3.68 C ATOM 108 O LEU 108 -7.093 -9.175 18.775 1.00 3.68 O ATOM 108 CB LEU 108 -4.313 -9.334 17.365 1.00 3.68 C ATOM 108 CG LEU 108 -3.100 -9.845 16.568 1.00 3.68 C ATOM 108 CD1 LEU 108 -3.462 -10.137 15.112 1.00 3.68 C ATOM 108 CD2 LEU 108 -1.917 -8.839 16.635 1.00 3.68 C ATOM 109 N ASP 109 -6.600 -10.425 19.739 1.00 3.83 N ATOM 109 CA ASP 109 -7.388 -9.886 20.845 1.00 3.83 C ATOM 109 C ASP 109 -6.743 -8.648 21.433 1.00 3.83 C ATOM 109 O ASP 109 -5.534 -8.554 21.481 1.00 3.83 O ATOM 109 CB ASP 109 -7.519 -10.916 21.987 1.00 3.83 C ATOM 109 CG ASP 109 -8.601 -12.009 21.800 1.00 3.83 C ATOM 110 N ASP 110 -7.570 -7.753 21.968 1.00 3.73 N ATOM 110 CA ASP 110 -7.112 -6.489 22.551 1.00 3.73 C ATOM 110 C ASP 110 -6.148 -6.606 23.715 1.00 3.73 C ATOM 110 O ASP 110 -5.199 -5.829 23.845 1.00 3.73 O ATOM 111 N GLN 111 -6.382 -7.602 24.550 1.00 3.91 N ATOM 111 CA GLN 111 -5.579 -7.786 25.762 1.00 3.91 C ATOM 111 C GLN 111 -4.134 -8.133 25.376 1.00 3.91 C ATOM 111 O GLN 111 -3.204 -7.847 26.138 1.00 3.91 O ATOM 111 CB GLN 111 -6.184 -8.884 26.668 1.00 3.91 C ATOM 111 CG GLN 111 -7.711 -9.113 26.483 1.00 3.91 C ATOM 111 CD GLN 111 -8.280 -10.220 27.401 1.00 3.91 C ATOM 112 N THR 112 -3.976 -8.769 24.203 1.00 3.77 N ATOM 112 CA THR 112 -2.672 -9.161 23.662 1.00 3.77 C ATOM 112 C THR 112 -2.020 -8.010 22.922 1.00 3.77 C ATOM 112 O THR 112 -0.807 -7.859 22.997 1.00 3.77 O ATOM 112 CB THR 112 -2.762 -10.381 22.721 1.00 3.77 C ATOM 113 N ALA 113 -2.823 -7.205 22.211 1.00 3.59 N ATOM 113 CA ALA 113 -2.333 -5.936 21.659 1.00 3.59 C ATOM 113 C ALA 113 -1.769 -5.079 22.816 1.00 3.59 C ATOM 113 O ALA 113 -0.732 -4.453 22.666 1.00 3.59 O ATOM 113 CB ALA 113 -3.430 -5.189 20.829 1.00 3.59 C ATOM 114 N ILE 114 -2.432 -5.068 23.976 1.00 3.79 N ATOM 114 CA ILE 114 -1.928 -4.321 25.123 1.00 3.79 C ATOM 114 C ILE 114 -0.547 -4.805 25.515 1.00 3.79 C ATOM 114 O ILE 114 0.384 -4.009 25.653 1.00 3.79 O ATOM 114 CB ILE 114 -2.874 -4.394 26.328 1.00 3.79 C ATOM 115 N GLU 115 -0.431 -6.120 25.685 1.00 3.98 N ATOM 115 CA GLU 115 0.848 -6.795 26.012 1.00 3.98 C ATOM 115 C GLU 115 1.953 -6.468 25.004 1.00 3.98 C ATOM 115 O GLU 115 3.034 -6.051 25.378 1.00 3.98 O ATOM 115 CB GLU 115 0.627 -8.329 26.168 1.00 3.98 C ATOM 115 CG GLU 115 0.334 -8.744 27.647 1.00 3.98 C ATOM 115 CD GLU 115 -0.610 -9.992 27.870 1.00 3.98 C ATOM 116 N LEU 116 1.640 -6.622 23.722 1.00 3.89 N ATOM 116 CA LEU 116 2.571 -6.369 22.634 1.00 3.89 C ATOM 116 C LEU 116 3.058 -4.935 22.653 1.00 3.89 C ATOM 116 O LEU 116 4.246 -4.677 22.559 1.00 3.89 O ATOM 116 CB LEU 116 1.892 -6.722 21.274 1.00 3.89 C ATOM 116 CG LEU 116 1.678 -8.259 21.168 1.00 3.89 C ATOM 116 CD1 LEU 116 0.817 -8.692 19.954 1.00 3.89 C ATOM 117 N LEU 117 2.126 -3.994 22.774 1.00 3.73 N ATOM 117 CA LEU 117 2.442 -2.594 22.847 1.00 3.73 C ATOM 117 C LEU 117 3.346 -2.312 24.051 1.00 3.73 C ATOM 117 O LEU 117 4.329 -1.580 23.940 1.00 3.73 O ATOM 117 CB LEU 117 1.132 -1.731 22.865 1.00 3.73 C ATOM 117 CG LEU 117 1.408 -0.274 23.269 1.00 3.73 C ATOM 118 N ILE 118 3.038 -2.903 25.195 1.00 3.97 N ATOM 118 CA ILE 118 3.896 -2.730 26.373 1.00 3.97 C ATOM 118 C ILE 118 5.340 -3.235 26.153 1.00 3.97 C ATOM 118 O ILE 118 6.300 -2.588 26.581 1.00 3.97 O ATOM 118 CB ILE 118 3.280 -3.433 27.578 1.00 3.97 C ATOM 119 N LYS 119 5.474 -4.383 25.476 1.00 4.16 N ATOM 119 CA LYS 119 6.774 -4.899 25.017 1.00 4.16 C ATOM 119 C LYS 119 7.473 -3.948 24.069 1.00 4.16 C ATOM 119 O LYS 119 8.645 -3.682 24.236 1.00 4.16 O ATOM 119 CB LYS 119 6.614 -6.225 24.252 1.00 4.16 C ATOM 119 CG LYS 119 6.402 -7.410 25.149 1.00 4.16 C ATOM 120 N ARG 120 6.760 -3.475 23.048 1.00 4.17 N ATOM 120 CA ARG 120 7.323 -2.529 22.073 1.00 4.17 C ATOM 120 C ARG 120 7.825 -1.260 22.749 1.00 4.17 C ATOM 120 O ARG 120 8.764 -0.651 22.251 1.00 4.17 O ATOM 120 CB ARG 120 6.318 -2.117 20.978 1.00 4.17 C ATOM 121 N SER 121 7.202 -0.860 23.859 1.00 4.08 N ATOM 121 CA SER 121 7.540 0.383 24.570 1.00 4.08 C ATOM 121 C SER 121 8.583 0.200 25.702 1.00 4.08 C ATOM 121 O SER 121 9.108 1.199 26.237 1.00 4.08 O ATOM 121 CB SER 121 6.259 1.001 25.190 1.00 4.08 C ATOM 122 CA ARG 122 9.787 -1.355 27.135 1.00 4.83 C ATOM 123 CA ASN 123 9.031 1.393 29.722 1.00 9.24 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 217 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 29.49 93.1 72 94.7 76 ARMSMC SECONDARY STRUCTURE . . 30.82 93.7 63 98.4 64 ARMSMC SURFACE . . . . . . . . 30.33 92.6 68 94.4 72 ARMSMC BURIED . . . . . . . . 4.29 100.0 4 100.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.48 44.4 18 52.9 34 ARMSSC1 RELIABLE SIDE CHAINS . 81.48 44.4 18 52.9 34 ARMSSC1 SECONDARY STRUCTURE . . 77.89 46.7 15 53.6 28 ARMSSC1 SURFACE . . . . . . . . 81.48 44.4 18 52.9 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 26.00 77.8 9 30.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 31.76 66.7 6 26.1 23 ARMSSC2 SECONDARY STRUCTURE . . 27.58 75.0 8 33.3 24 ARMSSC2 SURFACE . . . . . . . . 26.00 77.8 9 30.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 49.95 50.0 2 14.3 14 ARMSSC3 RELIABLE SIDE CHAINS . 49.95 50.0 2 16.7 12 ARMSSC3 SECONDARY STRUCTURE . . 49.95 50.0 2 15.4 13 ARMSSC3 SURFACE . . . . . . . . 49.95 50.0 2 14.3 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.11 (Number of atoms: 39) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.11 39 100.0 39 CRMSCA CRN = ALL/NP . . . . . 0.0540 CRMSCA SECONDARY STRUCTURE . . 1.73 32 100.0 32 CRMSCA SURFACE . . . . . . . . 2.15 37 100.0 37 CRMSCA BURIED . . . . . . . . 0.81 2 100.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.86 185 95.4 194 CRMSMC SECONDARY STRUCTURE . . 1.78 159 99.4 160 CRMSMC SURFACE . . . . . . . . 1.90 175 95.1 184 CRMSMC BURIED . . . . . . . . 0.86 10 100.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 2.97 67 42.7 157 CRMSSC RELIABLE SIDE CHAINS . 2.98 63 45.3 139 CRMSSC SECONDARY STRUCTURE . . 2.98 58 44.6 130 CRMSSC SURFACE . . . . . . . . 3.01 65 41.9 155 CRMSSC BURIED . . . . . . . . 1.33 2 100.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.17 217 69.3 313 CRMSALL SECONDARY STRUCTURE . . 2.11 186 72.1 258 CRMSALL SURFACE . . . . . . . . 2.21 207 68.3 303 CRMSALL BURIED . . . . . . . . 0.86 10 100.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.781 0.361 0.421 39 100.0 39 ERRCA SECONDARY STRUCTURE . . 1.695 0.349 0.410 32 100.0 32 ERRCA SURFACE . . . . . . . . 1.728 0.343 0.404 37 100.0 37 ERRCA BURIED . . . . . . . . 2.769 0.695 0.750 2 100.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.780 0.374 0.430 185 95.4 194 ERRMC SECONDARY STRUCTURE . . 1.745 0.370 0.425 159 99.4 160 ERRMC SURFACE . . . . . . . . 1.728 0.358 0.414 175 95.1 184 ERRMC BURIED . . . . . . . . 2.688 0.660 0.703 10 100.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.420 0.243 0.224 67 42.7 157 ERRSC RELIABLE SIDE CHAINS . 1.417 0.241 0.219 63 45.3 139 ERRSC SECONDARY STRUCTURE . . 1.400 0.236 0.218 58 44.6 130 ERRSC SURFACE . . . . . . . . 1.394 0.234 0.214 65 41.9 155 ERRSC BURIED . . . . . . . . 2.271 0.522 0.557 2 100.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.738 0.353 0.395 217 69.3 313 ERRALL SECONDARY STRUCTURE . . 1.715 0.351 0.392 186 72.1 258 ERRALL SURFACE . . . . . . . . 1.693 0.338 0.380 207 68.3 303 ERRALL BURIED . . . . . . . . 2.688 0.660 0.703 10 100.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 5 30 38 38 39 39 39 DISTCA CA (P) 12.82 76.92 97.44 97.44 100.00 39 DISTCA CA (RMS) 0.63 1.44 1.70 1.70 2.11 DISTCA ALL (N) 38 142 195 212 217 217 313 DISTALL ALL (P) 12.14 45.37 62.30 67.73 69.33 313 DISTALL ALL (RMS) 0.71 1.37 1.71 1.95 2.17 DISTALL END of the results output