####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 39 ( 194), selected 39 , name T0586TS444_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 39 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS444_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 37 87 - 123 4.86 5.62 LCS_AVERAGE: 94.28 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 98 - 121 1.95 11.01 LCS_AVERAGE: 54.57 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 86 - 96 0.97 12.19 LONGEST_CONTINUOUS_SEGMENT: 11 101 - 111 0.96 11.03 LONGEST_CONTINUOUS_SEGMENT: 11 106 - 116 0.94 15.08 LCS_AVERAGE: 25.84 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 39 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 10 15 31 4 6 13 13 15 17 17 18 19 21 23 24 25 27 29 31 32 34 37 39 LCS_GDT Q 86 Q 86 11 15 34 4 9 13 13 15 17 17 18 20 22 23 25 28 30 35 37 38 38 38 39 LCS_GDT L 87 L 87 11 15 37 4 9 13 13 15 17 17 18 20 22 28 32 32 34 36 37 38 38 38 39 LCS_GDT K 88 K 88 11 15 37 4 9 13 13 15 17 17 18 20 22 24 26 31 34 36 37 38 38 38 39 LCS_GDT K 89 K 89 11 15 37 4 9 13 13 15 17 17 18 20 22 24 26 30 34 36 37 38 38 38 39 LCS_GDT E 90 E 90 11 15 37 4 9 13 13 15 17 17 18 20 22 28 32 33 34 36 37 38 38 38 39 LCS_GDT L 91 L 91 11 15 37 4 7 13 13 15 17 17 21 26 29 31 32 33 34 36 37 38 38 38 39 LCS_GDT A 92 A 92 11 15 37 5 6 13 13 15 17 17 20 24 29 31 32 33 34 36 37 38 38 38 39 LCS_GDT D 93 D 93 11 15 37 5 6 13 13 15 17 17 21 24 29 31 32 33 34 36 37 38 38 38 39 LCS_GDT A 94 A 94 11 16 37 5 9 13 13 15 18 23 26 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT I 95 I 95 11 19 37 5 9 13 15 17 23 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT T 96 T 96 11 19 37 5 9 13 15 17 23 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT E 97 E 97 8 19 37 3 6 9 15 17 23 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT R 98 R 98 8 24 37 3 5 11 17 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT F 99 F 99 8 24 37 3 7 11 16 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT L 100 L 100 8 24 37 3 6 9 15 17 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT E 101 E 101 11 24 37 3 9 10 15 17 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT E 102 E 102 11 24 37 5 9 14 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT A 103 A 103 11 24 37 3 9 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT K 104 K 104 11 24 37 5 9 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT S 105 S 105 11 24 37 5 9 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT I 106 I 106 11 24 37 5 9 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT G 107 G 107 11 24 37 5 9 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT L 108 L 108 11 24 37 5 9 14 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT D 109 D 109 11 24 37 5 9 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT D 110 D 110 11 24 37 3 8 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT Q 111 Q 111 11 24 37 3 8 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT T 112 T 112 11 24 37 4 8 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT A 113 A 113 11 24 37 4 8 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT I 114 I 114 11 24 37 4 9 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT E 115 E 115 11 24 37 4 8 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT L 116 L 116 11 24 37 3 8 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT L 117 L 117 9 24 37 5 6 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT I 118 I 118 9 24 37 5 7 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT K 119 K 119 8 24 37 5 7 11 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT R 120 R 120 7 24 37 5 6 11 17 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT S 121 S 121 7 24 37 5 8 12 17 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT R 122 R 122 7 23 37 3 6 12 14 20 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 LCS_GDT N 123 N 123 7 23 37 3 4 8 10 13 23 26 29 29 30 31 31 33 33 35 36 38 38 38 39 LCS_AVERAGE LCS_A: 58.23 ( 25.84 54.57 94.28 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 9 15 18 22 24 27 29 29 30 31 32 33 34 36 37 38 38 38 39 GDT PERCENT_AT 12.82 23.08 38.46 46.15 56.41 61.54 69.23 74.36 74.36 76.92 79.49 82.05 84.62 87.18 92.31 94.87 97.44 97.44 97.44 100.00 GDT RMS_LOCAL 0.13 0.56 1.17 1.35 1.73 1.94 2.31 2.47 2.47 2.73 3.13 3.55 3.63 4.27 4.77 5.02 5.12 5.12 5.12 5.44 GDT RMS_ALL_AT 12.28 11.24 14.24 13.40 11.18 10.98 9.70 9.38 9.38 8.81 7.97 7.08 7.18 6.00 5.59 5.47 5.48 5.48 5.48 5.44 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 27.240 3 0.036 0.040 29.272 0.000 0.000 LGA Q 86 Q 86 24.798 4 0.097 0.109 26.289 0.000 0.000 LGA L 87 L 87 20.491 3 0.094 0.105 22.494 0.000 0.000 LGA K 88 K 88 18.801 4 0.100 0.103 20.680 0.000 0.000 LGA K 89 K 89 20.281 4 0.039 0.040 22.887 0.000 0.000 LGA E 90 E 90 16.960 4 0.103 0.107 18.266 0.000 0.000 LGA L 91 L 91 11.008 3 0.035 0.037 13.453 1.190 0.595 LGA A 92 A 92 11.342 0 0.135 0.146 13.067 0.714 0.571 LGA D 93 D 93 10.924 3 0.040 0.037 13.012 1.548 0.774 LGA A 94 A 94 7.475 0 0.057 0.066 8.930 19.048 16.667 LGA I 95 I 95 3.390 3 0.022 0.026 5.183 57.262 31.905 LGA T 96 T 96 4.190 2 0.019 0.033 5.388 41.905 27.687 LGA E 97 E 97 3.728 4 0.161 0.177 4.568 50.238 25.820 LGA R 98 R 98 1.523 6 0.080 0.080 1.862 75.000 33.896 LGA F 99 F 99 1.469 6 0.012 0.016 2.835 88.214 37.273 LGA L 100 L 100 2.784 3 0.122 0.137 3.501 59.286 35.060 LGA E 101 E 101 3.396 4 0.162 0.164 3.915 53.571 28.624 LGA E 102 E 102 2.040 4 0.136 0.140 2.303 68.810 38.677 LGA A 103 A 103 1.421 0 0.024 0.023 1.688 79.286 78.000 LGA K 104 K 104 1.538 4 0.119 0.122 2.317 79.405 42.487 LGA S 105 S 105 1.347 1 0.031 0.039 2.024 81.429 65.079 LGA I 106 I 106 0.792 3 0.075 0.070 0.987 90.476 56.548 LGA G 107 G 107 1.174 0 0.083 0.083 2.297 77.381 77.381 LGA L 108 L 108 1.669 3 0.202 0.255 2.670 69.048 44.702 LGA D 109 D 109 3.122 3 0.087 0.144 4.028 59.286 34.286 LGA D 110 D 110 2.599 3 0.025 0.034 3.316 62.976 37.738 LGA Q 111 Q 111 2.309 4 0.025 0.025 3.255 68.810 36.138 LGA T 112 T 112 2.466 2 0.041 0.049 2.962 64.762 45.170 LGA A 113 A 113 1.705 0 0.141 0.146 3.511 65.595 67.048 LGA I 114 I 114 2.381 3 0.020 0.026 3.122 63.095 38.690 LGA E 115 E 115 1.684 4 0.082 0.085 2.454 68.810 39.630 LGA L 116 L 116 2.934 3 0.151 0.154 3.737 53.810 33.155 LGA L 117 L 117 3.525 3 0.038 0.040 3.832 48.333 29.583 LGA I 118 I 118 1.941 3 0.051 0.067 2.395 72.976 45.595 LGA K 119 K 119 2.207 4 0.018 0.021 2.752 64.762 35.132 LGA R 120 R 120 2.551 6 0.216 0.218 2.940 60.952 27.359 LGA S 121 S 121 1.055 1 0.044 0.050 1.595 83.690 67.937 LGA R 122 R 122 2.226 6 0.160 0.165 3.773 61.667 26.970 LGA N 123 N 123 3.659 3 0.541 0.544 6.832 33.810 20.179 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 39 156 156 100.00 313 194 61.98 39 SUMMARY(RMSD_GDC): 5.436 5.313 5.502 49.414 31.445 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 39 39 4.0 29 2.47 59.615 61.045 1.129 LGA_LOCAL RMSD: 2.469 Number of atoms: 29 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.380 Number of assigned atoms: 39 Std_ASGN_ATOMS RMSD: 5.436 Standard rmsd on all 39 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.555695 * X + 0.725865 * Y + -0.405369 * Z + 2.048510 Y_new = 0.231615 * X + 0.603440 * Y + 0.763030 * Z + -8.510994 Z_new = 0.798472 * X + 0.330122 * Y + -0.503449 * Z + 32.773918 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.746686 -0.924753 2.561206 [DEG: 157.3735 -52.9845 146.7463 ] ZXZ: -2.653249 2.098383 1.178756 [DEG: -152.0200 120.2285 67.5377 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS444_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS444_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 39 39 4.0 29 2.47 61.045 5.44 REMARK ---------------------------------------------------------- MOLECULE T0586TS444_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT N/A ATOM 415 N ASP 85 11.046 -3.229 4.606 1.00 1.00 N ATOM 416 CA ASP 85 11.314 -3.151 6.028 1.00 1.00 C ATOM 417 C ASP 85 11.069 -1.735 6.527 1.00 1.00 C ATOM 418 O ASP 85 10.467 -1.542 7.583 1.00 1.00 O ATOM 419 CB ASP 85 12.765 -3.535 6.292 1.00 1.00 C ATOM 420 N GLN 86 11.536 -0.742 5.766 1.00 1.00 N ATOM 421 CA GLN 86 11.367 0.649 6.134 1.00 1.00 C ATOM 422 C GLN 86 10.026 1.163 5.631 1.00 1.00 C ATOM 423 O GLN 86 9.246 1.723 6.400 1.00 1.00 O ATOM 424 CB GLN 86 12.489 1.476 5.512 1.00 1.00 C ATOM 425 N LEU 87 9.757 0.971 4.338 1.00 1.00 N ATOM 426 CA LEU 87 8.514 1.414 3.739 1.00 1.00 C ATOM 427 C LEU 87 7.344 1.063 4.645 1.00 1.00 C ATOM 428 O LEU 87 6.654 1.951 5.143 1.00 1.00 O ATOM 429 CB LEU 87 8.331 0.726 2.390 1.00 1.00 C ATOM 430 N LYS 88 7.120 -0.236 4.859 1.00 1.00 N ATOM 431 CA LYS 88 6.036 -0.698 5.703 1.00 1.00 C ATOM 432 C LYS 88 6.508 -0.811 7.146 1.00 1.00 C ATOM 433 O LYS 88 5.697 -0.791 8.069 1.00 1.00 O ATOM 434 CB LYS 88 5.564 -2.064 5.217 1.00 1.00 C ATOM 435 N LYS 89 7.824 -0.929 7.337 1.00 1.00 N ATOM 436 CA LYS 89 8.399 -1.045 8.662 1.00 1.00 C ATOM 437 C LYS 89 8.266 0.277 9.405 1.00 1.00 C ATOM 438 O LYS 89 8.040 0.290 10.614 1.00 1.00 O ATOM 439 CB LYS 89 9.873 -1.415 8.545 1.00 1.00 C ATOM 440 N GLU 90 8.411 1.388 8.681 1.00 1.00 N ATOM 441 CA GLU 90 8.308 2.707 9.271 1.00 1.00 C ATOM 442 C GLU 90 6.854 3.023 9.596 1.00 1.00 C ATOM 443 O GLU 90 6.575 3.929 10.377 1.00 1.00 O ATOM 444 CB GLU 90 8.845 3.744 8.291 1.00 1.00 C ATOM 445 N LEU 91 5.930 2.273 8.992 1.00 1.00 N ATOM 446 CA LEU 91 4.513 2.474 9.217 1.00 1.00 C ATOM 447 C LEU 91 4.119 1.934 10.585 1.00 1.00 C ATOM 448 O LEU 91 3.204 2.456 11.218 1.00 1.00 O ATOM 449 CB LEU 91 3.723 1.741 8.139 1.00 1.00 C ATOM 450 N ALA 92 4.813 0.889 11.037 1.00 1.00 N ATOM 451 CA ALA 92 4.536 0.284 12.325 1.00 1.00 C ATOM 452 C ALA 92 4.045 1.342 13.303 1.00 1.00 C ATOM 453 O ALA 92 2.874 1.344 13.681 1.00 1.00 O ATOM 454 CB ALA 92 5.808 -0.357 12.868 1.00 1.00 C ATOM 455 N ASP 93 4.942 2.240 13.712 1.00 1.00 N ATOM 456 CA ASP 93 4.599 3.297 14.643 1.00 1.00 C ATOM 457 C ASP 93 3.514 4.184 14.050 1.00 1.00 C ATOM 458 O ASP 93 2.690 4.730 14.781 1.00 1.00 O ATOM 459 CB ASP 93 5.838 4.139 14.929 1.00 1.00 C ATOM 460 N ALA 94 3.515 4.325 12.723 1.00 1.00 N ATOM 461 CA ALA 94 2.534 5.142 12.039 1.00 1.00 C ATOM 462 C ALA 94 1.147 4.531 12.190 1.00 1.00 C ATOM 463 O ALA 94 0.205 5.219 12.577 1.00 1.00 O ATOM 464 CB ALA 94 2.890 5.226 10.559 1.00 1.00 C ATOM 465 N ILE 95 1.027 3.238 11.883 1.00 1.00 N ATOM 466 CA ILE 95 -0.240 2.542 11.986 1.00 1.00 C ATOM 467 C ILE 95 -0.639 2.395 13.448 1.00 1.00 C ATOM 468 O ILE 95 -1.814 2.516 13.786 1.00 1.00 O ATOM 469 CB ILE 95 -0.109 1.159 11.357 1.00 1.00 C ATOM 470 N THR 96 0.343 2.135 14.313 1.00 1.00 N ATOM 471 CA THR 96 0.093 1.972 15.731 1.00 1.00 C ATOM 472 C THR 96 -1.318 2.434 16.069 1.00 1.00 C ATOM 473 O THR 96 -1.961 1.870 16.950 1.00 1.00 O ATOM 474 CB THR 96 1.100 2.802 16.520 1.00 1.00 C ATOM 475 N GLU 97 -1.795 3.462 15.363 1.00 1.00 N ATOM 476 CA GLU 97 -3.124 3.993 15.589 1.00 1.00 C ATOM 477 C GLU 97 -4.142 3.230 14.754 1.00 1.00 C ATOM 478 O GLU 97 -4.834 2.354 15.268 1.00 1.00 O ATOM 479 CB GLU 97 -3.152 5.467 15.197 1.00 1.00 C ATOM 480 N ARG 98 -4.231 3.565 13.465 1.00 1.00 N ATOM 481 CA ARG 98 -5.162 2.912 12.567 1.00 1.00 C ATOM 482 C ARG 98 -4.966 1.405 12.617 1.00 1.00 C ATOM 483 O ARG 98 -5.859 0.649 12.240 1.00 1.00 O ATOM 484 CB ARG 98 -4.920 3.407 11.143 1.00 1.00 C ATOM 485 N PHE 99 -3.794 0.968 13.085 1.00 1.00 N ATOM 486 CA PHE 99 -3.486 -0.444 13.183 1.00 1.00 C ATOM 487 C PHE 99 -3.947 -0.987 14.529 1.00 1.00 C ATOM 488 O PHE 99 -4.661 -1.986 14.585 1.00 1.00 O ATOM 489 CB PHE 99 -1.982 -0.645 13.045 1.00 1.00 C ATOM 490 N LEU 100 -3.535 -0.326 15.613 1.00 1.00 N ATOM 491 CA LEU 100 -3.905 -0.743 16.950 1.00 1.00 C ATOM 492 C LEU 100 -5.216 -1.516 16.914 1.00 1.00 C ATOM 493 O LEU 100 -5.273 -2.665 17.346 1.00 1.00 O ATOM 494 CB LEU 100 -4.069 0.487 17.836 1.00 1.00 C ATOM 495 N GLU 101 -6.270 -0.881 16.394 1.00 1.00 N ATOM 496 CA GLU 101 -7.573 -1.509 16.303 1.00 1.00 C ATOM 497 C GLU 101 -7.517 -2.694 15.350 1.00 1.00 C ATOM 498 O GLU 101 -8.469 -3.468 15.263 1.00 1.00 O ATOM 499 CB GLU 101 -8.589 -0.494 15.789 1.00 1.00 C ATOM 500 N GLU 102 -6.399 -2.833 14.634 1.00 1.00 N ATOM 501 CA GLU 102 -6.222 -3.921 13.692 1.00 1.00 C ATOM 502 C GLU 102 -6.039 -5.235 14.439 1.00 1.00 C ATOM 503 O GLU 102 -6.069 -6.303 13.832 1.00 1.00 O ATOM 504 CB GLU 102 -4.992 -3.650 12.833 1.00 1.00 C ATOM 505 N ALA 103 -5.848 -5.151 15.757 1.00 1.00 N ATOM 506 CA ALA 103 -5.661 -6.330 16.579 1.00 1.00 C ATOM 507 C ALA 103 -6.808 -7.306 16.363 1.00 1.00 C ATOM 508 O ALA 103 -6.584 -8.504 16.204 1.00 1.00 O ATOM 509 CB ALA 103 -5.614 -5.920 18.047 1.00 1.00 C ATOM 510 N LYS 104 -8.039 -6.790 16.358 1.00 1.00 N ATOM 511 CA LYS 104 -9.215 -7.614 16.164 1.00 1.00 C ATOM 512 C LYS 104 -9.417 -7.894 14.681 1.00 1.00 C ATOM 513 O LYS 104 -10.187 -8.779 14.314 1.00 1.00 O ATOM 514 CB LYS 104 -10.438 -6.888 16.712 1.00 1.00 C ATOM 515 N SER 105 -8.720 -7.137 13.831 1.00 1.00 N ATOM 516 CA SER 105 -8.824 -7.305 12.394 1.00 1.00 C ATOM 517 C SER 105 -8.071 -8.554 11.959 1.00 1.00 C ATOM 518 O SER 105 -8.348 -9.109 10.897 1.00 1.00 O ATOM 519 CB SER 105 -8.229 -6.085 11.698 1.00 1.00 C ATOM 520 N ILE 106 -7.116 -8.992 12.781 1.00 1.00 N ATOM 521 CA ILE 106 -6.328 -10.171 12.480 1.00 1.00 C ATOM 522 C ILE 106 -6.713 -11.311 13.412 1.00 1.00 C ATOM 523 O ILE 106 -5.910 -12.208 13.661 1.00 1.00 O ATOM 524 CB ILE 106 -4.848 -9.849 12.658 1.00 1.00 C ATOM 525 N GLY 107 -7.945 -11.275 13.926 1.00 1.00 N ATOM 526 CA GLY 107 -8.430 -12.302 14.825 1.00 1.00 C ATOM 527 C GLY 107 -7.439 -12.513 15.960 1.00 1.00 C ATOM 528 O GLY 107 -7.273 -13.633 16.440 1.00 1.00 O ATOM 529 N LEU 108 -6.781 -11.432 16.389 1.00 1.00 N ATOM 530 CA LEU 108 -5.812 -11.503 17.465 1.00 1.00 C ATOM 531 C LEU 108 -6.443 -11.037 18.769 1.00 1.00 C ATOM 532 O LEU 108 -7.470 -10.366 18.757 1.00 1.00 O ATOM 533 CB LEU 108 -4.621 -10.611 17.130 1.00 1.00 C ATOM 534 N ASP 109 -5.821 -11.397 19.895 1.00 1.00 N ATOM 535 CA ASP 109 -6.321 -11.016 21.200 1.00 1.00 C ATOM 536 C ASP 109 -6.080 -9.533 21.442 1.00 1.00 C ATOM 537 O ASP 109 -5.010 -9.018 21.128 1.00 1.00 O ATOM 538 CB ASP 109 -5.602 -11.826 22.274 1.00 1.00 C ATOM 539 N ASP 110 -7.080 -8.848 22.001 1.00 1.00 N ATOM 540 CA ASP 110 -6.974 -7.431 22.283 1.00 1.00 C ATOM 541 C ASP 110 -5.696 -7.145 23.058 1.00 1.00 C ATOM 542 O ASP 110 -4.979 -6.196 22.749 1.00 1.00 O ATOM 543 CB ASP 110 -8.177 -6.988 23.109 1.00 1.00 C ATOM 544 N GLN 111 -5.414 -7.970 24.069 1.00 1.00 N ATOM 545 CA GLN 111 -4.227 -7.805 24.884 1.00 1.00 C ATOM 546 C GLN 111 -3.010 -7.584 23.997 1.00 1.00 C ATOM 547 O GLN 111 -2.167 -6.741 24.297 1.00 1.00 O ATOM 548 CB GLN 111 -4.015 -9.057 25.729 1.00 1.00 C ATOM 549 N THR 112 -2.922 -8.342 22.902 1.00 1.00 N ATOM 550 CA THR 112 -1.812 -8.226 21.977 1.00 1.00 C ATOM 551 C THR 112 -1.750 -6.817 21.408 1.00 1.00 C ATOM 552 O THR 112 -0.695 -6.186 21.425 1.00 1.00 O ATOM 553 CB THR 112 -2.000 -9.223 20.837 1.00 1.00 C ATOM 554 N ALA 113 -2.885 -6.324 20.905 1.00 1.00 N ATOM 555 CA ALA 113 -2.956 -4.994 20.334 1.00 1.00 C ATOM 556 C ALA 113 -3.086 -3.957 21.441 1.00 1.00 C ATOM 557 O ALA 113 -2.841 -2.774 21.215 1.00 1.00 O ATOM 558 CB ALA 113 -4.166 -4.903 19.412 1.00 1.00 C ATOM 559 N ILE 114 -3.470 -4.405 22.639 1.00 1.00 N ATOM 560 CA ILE 114 -3.631 -3.518 23.772 1.00 1.00 C ATOM 561 C ILE 114 -2.352 -3.487 24.597 1.00 1.00 C ATOM 562 O ILE 114 -1.954 -2.434 25.088 1.00 1.00 O ATOM 563 CB ILE 114 -4.782 -4.011 24.643 1.00 1.00 C ATOM 564 N GLU 115 -1.711 -4.649 24.749 1.00 1.00 N ATOM 565 CA GLU 115 -0.483 -4.750 25.511 1.00 1.00 C ATOM 566 C GLU 115 0.715 -4.469 24.616 1.00 1.00 C ATOM 567 O GLU 115 1.764 -4.050 25.095 1.00 1.00 O ATOM 568 CB GLU 115 -0.363 -6.157 26.089 1.00 1.00 C ATOM 569 N LEU 116 0.552 -4.701 23.311 1.00 1.00 N ATOM 570 CA LEU 116 1.617 -4.472 22.355 1.00 1.00 C ATOM 571 C LEU 116 2.087 -3.027 22.431 1.00 1.00 C ATOM 572 O LEU 116 3.110 -2.674 21.849 1.00 1.00 O ATOM 573 CB LEU 116 1.105 -4.764 20.948 1.00 1.00 C ATOM 574 N LEU 117 1.338 -2.191 23.155 1.00 1.00 N ATOM 575 CA LEU 117 1.679 -0.792 23.305 1.00 1.00 C ATOM 576 C LEU 117 2.851 -0.640 24.264 1.00 1.00 C ATOM 577 O LEU 117 3.853 -0.012 23.926 1.00 1.00 O ATOM 578 CB LEU 117 0.475 -0.036 23.856 1.00 1.00 C ATOM 579 N ILE 118 2.723 -1.215 25.461 1.00 1.00 N ATOM 580 CA ILE 118 3.768 -1.140 26.461 1.00 1.00 C ATOM 581 C ILE 118 4.689 -2.347 26.346 1.00 1.00 C ATOM 582 O ILE 118 5.905 -2.195 26.257 1.00 1.00 O ATOM 583 CB ILE 118 3.139 -1.117 27.850 1.00 1.00 C ATOM 584 N LYS 119 4.104 -3.548 26.349 1.00 1.00 N ATOM 585 CA LYS 119 4.869 -4.773 26.245 1.00 1.00 C ATOM 586 C LYS 119 5.733 -4.746 24.991 1.00 1.00 C ATOM 587 O LYS 119 6.889 -5.160 25.021 1.00 1.00 O ATOM 588 CB LYS 119 3.918 -5.962 26.178 1.00 1.00 C ATOM 589 N ARG 120 5.165 -4.255 23.886 1.00 1.00 N ATOM 590 CA ARG 120 5.880 -4.176 22.629 1.00 1.00 C ATOM 591 C ARG 120 6.964 -3.111 22.709 1.00 1.00 C ATOM 592 O ARG 120 7.687 -2.883 21.742 1.00 1.00 O ATOM 593 CB ARG 120 4.903 -3.821 21.513 1.00 1.00 C ATOM 594 N SER 121 7.073 -2.458 23.869 1.00 1.00 N ATOM 595 CA SER 121 8.066 -1.421 24.073 1.00 1.00 C ATOM 596 C SER 121 9.465 -2.017 24.013 1.00 1.00 C ATOM 597 O SER 121 10.367 -1.429 23.419 1.00 1.00 O ATOM 598 CB SER 121 7.850 -0.775 25.437 1.00 1.00 C ATOM 599 N ARG 122 9.643 -3.188 24.629 1.00 1.00 N ATOM 600 CA ARG 122 10.928 -3.857 24.644 1.00 1.00 C ATOM 601 C ARG 122 11.335 -4.239 23.228 1.00 1.00 C ATOM 602 O ARG 122 12.520 -4.233 22.899 1.00 1.00 O ATOM 603 CB ARG 122 10.833 -5.116 25.499 1.00 1.00 C ATOM 604 N ASN 123 10.350 -4.570 22.390 1.00 1.00 N ATOM 605 CA ASN 123 10.607 -4.952 21.017 1.00 1.00 C ATOM 606 C ASN 123 10.039 -3.907 20.067 1.00 1.00 C ATOM 607 O ASN 123 9.888 -4.166 18.876 1.00 1.00 O ATOM 608 CB ASN 123 9.951 -6.300 20.735 1.00 1.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 194 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 28.41 85.5 76 100.0 76 ARMSMC SECONDARY STRUCTURE . . 19.41 87.5 64 100.0 64 ARMSMC SURFACE . . . . . . . . 28.90 84.7 72 100.0 72 ARMSMC BURIED . . . . . . . . 17.53 100.0 4 100.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 34 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 24 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.44 (Number of atoms: 39) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.44 39 100.0 39 CRMSCA CRN = ALL/NP . . . . . 0.1394 CRMSCA SECONDARY STRUCTURE . . 4.93 32 100.0 32 CRMSCA SURFACE . . . . . . . . 5.57 37 100.0 37 CRMSCA BURIED . . . . . . . . 1.75 2 100.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.51 194 100.0 194 CRMSMC SECONDARY STRUCTURE . . 4.97 160 100.0 160 CRMSMC SURFACE . . . . . . . . 5.63 184 100.0 184 CRMSMC BURIED . . . . . . . . 2.19 10 100.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 6.19 38 24.2 157 CRMSSC RELIABLE SIDE CHAINS . 6.19 38 27.3 139 CRMSSC SECONDARY STRUCTURE . . 5.76 32 24.6 130 CRMSSC SURFACE . . . . . . . . 6.35 36 23.2 155 CRMSSC BURIED . . . . . . . . 1.38 2 100.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 5.51 194 62.0 313 CRMSALL SECONDARY STRUCTURE . . 4.97 160 62.0 258 CRMSALL SURFACE . . . . . . . . 5.63 184 60.7 303 CRMSALL BURIED . . . . . . . . 2.19 10 100.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.003 0.616 0.308 39 100.0 39 ERRCA SECONDARY STRUCTURE . . 3.584 0.592 0.296 32 100.0 32 ERRCA SURFACE . . . . . . . . 4.184 0.638 0.319 37 100.0 37 ERRCA BURIED . . . . . . . . 0.659 0.215 0.108 2 100.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.053 0.623 0.312 194 100.0 194 ERRMC SECONDARY STRUCTURE . . 3.624 0.600 0.301 160 100.0 160 ERRMC SURFACE . . . . . . . . 4.214 0.639 0.320 184 100.0 184 ERRMC BURIED . . . . . . . . 1.088 0.321 0.177 10 100.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.652 0.653 0.331 38 24.2 157 ERRSC RELIABLE SIDE CHAINS . 4.652 0.653 0.331 38 27.3 139 ERRSC SECONDARY STRUCTURE . . 4.322 0.639 0.325 32 24.6 130 ERRSC SURFACE . . . . . . . . 4.875 0.673 0.336 36 23.2 155 ERRSC BURIED . . . . . . . . 0.647 0.288 0.228 2 100.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.053 0.623 0.312 194 62.0 313 ERRALL SECONDARY STRUCTURE . . 3.624 0.600 0.301 160 62.0 258 ERRALL SURFACE . . . . . . . . 4.214 0.639 0.320 184 60.7 303 ERRALL BURIED . . . . . . . . 1.088 0.321 0.177 10 100.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 3 7 19 38 39 39 DISTCA CA (P) 0.00 7.69 17.95 48.72 97.44 39 DISTCA CA (RMS) 0.00 1.49 2.28 3.48 5.16 DISTCA ALL (N) 2 10 34 99 188 194 313 DISTALL ALL (P) 0.64 3.19 10.86 31.63 60.06 313 DISTALL ALL (RMS) 0.67 1.41 2.33 3.55 5.18 DISTALL END of the results output