####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 80 ( 394), selected 80 , name T0586TS444_1-D1 # Molecule2: number of CA atoms 80 ( 640), selected 80 , name T0586-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS444_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 45 - 70 4.62 19.69 LONGEST_CONTINUOUS_SEGMENT: 26 46 - 71 4.88 20.41 LONGEST_CONTINUOUS_SEGMENT: 26 48 - 73 4.93 21.13 LCS_AVERAGE: 28.56 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 48 - 66 1.97 17.04 LCS_AVERAGE: 12.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 53 - 65 0.90 17.36 LCS_AVERAGE: 8.17 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 80 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 5 N 5 3 3 20 0 3 4 8 13 14 18 19 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT P 6 P 6 3 3 20 0 3 3 8 13 13 18 19 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT T 7 T 7 3 3 20 1 3 4 8 8 13 17 18 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT F 8 F 8 3 3 20 0 3 3 3 5 7 15 17 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT H 9 H 9 4 6 20 3 4 4 5 6 6 17 18 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT A 10 A 10 4 6 20 3 4 4 5 6 6 6 17 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT D 11 D 11 4 6 20 3 4 4 5 6 7 9 12 17 21 26 28 34 35 35 36 38 39 41 41 LCS_GDT K 12 K 12 4 6 20 3 4 4 5 6 7 9 11 16 21 26 28 34 35 35 36 38 39 41 41 LCS_GDT P 13 P 13 4 6 20 3 4 4 5 6 6 8 12 17 21 26 29 34 35 35 36 38 39 41 41 LCS_GDT I 14 I 14 4 6 20 3 4 5 5 6 10 12 15 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT Y 15 Y 15 4 4 20 3 4 5 6 8 8 12 13 17 23 27 29 34 35 35 36 38 39 41 41 LCS_GDT S 16 S 16 3 3 20 0 5 5 7 7 7 15 17 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT Q 17 Q 17 3 3 21 0 3 4 6 7 9 12 13 16 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT I 18 I 18 3 3 21 0 3 6 6 9 11 11 13 17 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT S 19 S 19 5 11 21 5 5 7 9 10 11 12 12 13 19 21 27 30 32 33 35 38 39 41 41 LCS_GDT D 20 D 20 5 11 21 5 5 7 9 10 11 12 12 15 19 22 26 30 31 33 35 37 39 41 41 LCS_GDT W 21 W 21 8 11 21 5 5 7 9 10 11 12 12 16 19 24 27 31 35 35 36 38 39 41 41 LCS_GDT M 22 M 22 8 11 21 5 8 8 9 10 11 12 13 17 23 27 29 34 35 35 36 38 39 41 41 LCS_GDT K 23 K 23 8 11 22 5 8 8 9 10 11 12 13 16 21 26 28 34 35 35 36 38 39 41 41 LCS_GDT K 24 K 24 8 11 23 4 8 8 9 10 11 15 18 21 23 27 29 34 35 35 36 38 39 41 41 LCS_GDT Q 25 Q 25 8 11 24 4 8 9 13 17 17 19 19 20 22 24 27 28 33 34 36 38 39 41 41 LCS_GDT M 26 M 26 8 11 24 4 8 8 9 18 18 19 20 21 22 23 25 28 33 34 36 38 39 41 41 LCS_GDT I 27 I 27 8 11 24 4 8 8 9 10 11 12 14 16 18 20 23 26 28 30 35 38 39 40 41 LCS_GDT T 28 T 28 8 11 24 4 8 8 9 10 11 18 20 20 21 21 24 26 28 30 35 38 39 40 40 LCS_GDT G 29 G 29 8 11 24 4 8 8 9 10 11 12 14 15 17 20 24 26 28 30 32 35 37 40 40 LCS_GDT E 30 E 30 3 5 24 3 3 4 5 8 11 12 14 15 21 22 24 26 28 30 32 35 37 40 40 LCS_GDT W 31 W 31 3 5 24 3 3 7 10 16 19 20 21 22 22 24 24 27 28 30 32 35 37 40 40 LCS_GDT K 32 K 32 4 5 24 0 4 4 8 10 11 12 14 15 17 24 26 27 28 30 31 35 37 40 40 LCS_GDT G 33 G 33 4 5 24 3 4 4 7 7 8 12 12 13 16 17 19 21 23 24 27 29 34 36 38 LCS_GDT E 34 E 34 4 5 24 3 4 4 4 5 8 11 12 13 16 18 19 22 25 29 30 35 37 40 40 LCS_GDT D 35 D 35 4 7 24 3 4 7 9 10 11 12 14 15 17 20 26 27 28 30 32 35 37 40 40 LCS_GDT K 36 K 36 6 7 24 3 6 6 9 10 11 12 14 15 17 19 23 27 28 30 32 35 37 40 40 LCS_GDT L 37 L 37 6 7 24 3 6 6 9 10 11 12 14 15 17 20 26 27 28 30 32 35 37 40 40 LCS_GDT P 38 P 38 6 7 24 3 6 7 9 10 11 12 14 15 17 20 24 27 28 30 32 35 37 40 40 LCS_GDT S 39 S 39 6 7 24 3 6 7 9 10 11 12 14 15 17 20 23 26 28 30 32 35 37 40 40 LCS_GDT V 40 V 40 6 7 24 4 6 7 9 10 11 12 14 15 17 20 23 26 28 30 32 35 37 40 40 LCS_GDT R 41 R 41 6 7 24 4 6 7 9 10 11 12 14 15 17 20 23 26 28 30 32 35 37 40 40 LCS_GDT E 42 E 42 5 6 24 4 4 5 5 5 8 10 12 13 16 17 21 22 26 27 29 31 34 37 39 LCS_GDT M 43 M 43 5 6 24 4 4 5 5 7 8 10 12 13 16 18 21 22 26 27 29 31 34 37 39 LCS_GDT G 44 G 44 5 6 25 4 4 5 5 7 8 10 12 13 16 17 21 22 26 27 29 31 34 37 38 LCS_GDT V 45 V 45 3 4 26 3 3 4 4 5 6 10 14 15 17 20 26 27 28 30 31 35 37 40 40 LCS_GDT K 46 K 46 3 4 26 1 3 6 8 9 10 12 14 15 21 24 26 27 28 30 31 35 36 40 40 LCS_GDT L 47 L 47 3 11 26 0 3 4 8 9 14 20 21 22 22 24 26 27 28 30 31 35 37 40 40 LCS_GDT A 48 A 48 4 19 26 3 3 8 10 16 19 20 21 22 22 24 26 27 28 31 33 35 37 40 40 LCS_GDT V 49 V 49 9 19 26 3 5 8 9 18 19 20 21 22 22 24 26 29 32 33 35 38 39 41 41 LCS_GDT N 50 N 50 10 19 26 3 8 12 15 18 19 20 21 22 26 26 29 34 35 35 36 38 39 41 41 LCS_GDT P 51 P 51 10 19 26 3 5 12 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT N 52 N 52 12 19 26 3 9 12 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT T 53 T 53 13 19 26 5 10 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT V 54 V 54 13 19 26 5 10 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT S 55 S 55 13 19 26 5 10 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT R 56 R 56 13 19 26 5 9 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT A 57 A 57 13 19 26 5 9 13 15 18 18 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT Y 58 Y 58 13 19 26 5 10 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT Q 59 Q 59 13 19 26 5 10 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT E 60 E 60 13 19 26 6 10 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT L 61 L 61 13 19 26 6 10 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT E 62 E 62 13 19 26 6 10 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT R 63 R 63 13 19 26 6 10 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT A 64 A 64 13 19 26 6 10 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT G 65 G 65 13 19 26 6 9 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 LCS_GDT Y 66 Y 66 8 19 26 3 4 10 13 15 19 20 21 22 22 26 29 34 35 35 36 38 39 41 41 LCS_GDT I 67 I 67 4 15 26 3 4 5 7 10 15 17 20 22 22 24 26 28 31 33 36 38 39 41 41 LCS_GDT Y 68 Y 68 5 8 26 3 4 5 7 9 11 11 15 18 20 21 23 25 27 31 33 33 36 39 39 LCS_GDT A 69 A 69 6 8 26 3 5 7 7 9 11 11 14 16 20 21 23 25 26 28 30 31 33 34 37 LCS_GDT K 70 K 70 6 8 26 4 5 7 7 9 11 11 13 16 20 21 23 25 26 28 29 30 33 34 37 LCS_GDT R 71 R 71 6 8 26 4 5 7 7 9 11 11 12 13 15 18 21 23 24 27 28 29 30 32 37 LCS_GDT G 72 G 72 6 10 26 4 5 7 8 9 11 11 12 13 14 17 21 23 24 27 28 29 30 32 37 LCS_GDT M 73 M 73 6 10 26 4 5 7 8 9 11 11 13 16 19 22 22 25 26 28 29 30 33 34 37 LCS_GDT G 74 G 74 6 10 22 4 5 7 8 9 11 11 13 16 19 22 22 23 26 28 29 31 33 34 37 LCS_GDT S 75 S 75 5 10 16 4 5 6 8 9 10 12 13 16 19 22 22 23 25 29 30 31 34 36 37 LCS_GDT F 76 F 76 5 10 16 4 5 6 8 9 10 12 13 16 19 22 22 23 25 28 30 34 34 38 39 LCS_GDT V 77 V 77 5 10 16 4 5 6 8 9 10 12 13 16 19 22 23 26 28 30 32 35 37 40 40 LCS_GDT T 78 T 78 5 10 16 4 5 6 8 9 10 12 13 16 19 22 23 26 28 30 32 35 37 40 40 LCS_GDT S 79 S 79 4 10 16 3 3 5 7 9 10 11 12 16 19 22 23 26 28 30 32 35 37 40 40 LCS_GDT D 80 D 80 4 10 16 4 4 5 8 9 10 11 13 16 19 22 23 26 28 30 32 35 37 40 40 LCS_GDT K 81 K 81 4 10 16 4 4 5 8 9 10 11 12 16 19 22 22 23 25 27 31 32 34 37 39 LCS_GDT A 82 A 82 4 5 16 4 4 4 5 5 5 9 11 13 19 22 23 26 28 30 32 35 37 40 40 LCS_GDT L 83 L 83 4 5 16 4 4 4 6 7 8 12 13 16 18 22 23 26 28 30 32 35 37 40 40 LCS_GDT F 84 F 84 3 5 16 3 3 5 6 7 8 12 13 16 19 22 23 26 28 30 32 34 37 40 40 LCS_AVERAGE LCS_A: 16.49 ( 8.17 12.75 28.56 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 10 13 15 18 19 20 21 23 26 27 29 34 35 35 36 38 39 41 41 GDT PERCENT_AT 7.50 12.50 16.25 18.75 22.50 23.75 25.00 26.25 28.75 32.50 33.75 36.25 42.50 43.75 43.75 45.00 47.50 48.75 51.25 51.25 GDT RMS_LOCAL 0.37 0.75 0.90 1.20 1.59 1.99 2.07 2.24 3.13 7.07 3.70 3.88 7.03 4.55 4.55 4.69 5.31 5.10 5.44 5.44 GDT RMS_ALL_AT 17.14 17.36 17.36 17.26 17.31 17.08 17.02 17.00 20.02 20.11 19.57 19.55 19.11 19.32 19.32 19.14 18.41 18.99 18.89 18.89 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 5 N 5 19.474 3 0.064 0.098 20.230 0.000 0.000 LGA P 6 P 6 18.263 2 0.684 0.623 18.665 0.000 0.000 LGA T 7 T 7 21.646 2 0.648 0.596 23.827 0.000 0.000 LGA F 8 F 8 25.074 6 0.632 0.588 26.258 0.000 0.000 LGA H 9 H 9 26.513 5 0.547 0.552 27.075 0.000 0.000 LGA A 10 A 10 25.539 0 0.124 0.132 27.005 0.000 0.000 LGA D 11 D 11 30.302 3 0.078 0.091 32.473 0.000 0.000 LGA K 12 K 12 27.701 4 0.660 0.608 28.512 0.000 0.000 LGA P 13 P 13 24.052 2 0.096 0.153 25.692 0.000 0.000 LGA I 14 I 14 17.031 3 0.614 0.600 19.640 0.000 0.000 LGA Y 15 Y 15 15.830 7 0.623 0.609 16.550 0.000 0.000 LGA S 16 S 16 16.215 1 0.619 0.596 17.732 0.000 0.000 LGA Q 17 Q 17 17.745 4 0.629 0.600 18.134 0.000 0.000 LGA I 18 I 18 16.650 3 0.567 0.576 17.455 0.000 0.000 LGA S 19 S 19 19.054 1 0.613 0.609 20.645 0.000 0.000 LGA D 20 D 20 24.980 3 0.076 0.091 27.862 0.000 0.000 LGA W 21 W 21 24.019 9 0.134 0.147 25.289 0.000 0.000 LGA M 22 M 22 16.611 3 0.011 0.018 19.368 0.000 0.000 LGA K 23 K 23 17.527 4 0.027 0.026 20.200 0.000 0.000 LGA K 24 K 24 18.626 4 0.066 0.086 20.917 0.000 0.000 LGA Q 25 Q 25 13.567 4 0.197 0.219 15.438 0.119 0.053 LGA M 26 M 26 10.094 3 0.046 0.046 11.391 0.000 0.000 LGA I 27 I 27 14.029 3 0.101 0.098 16.633 0.000 0.000 LGA T 28 T 28 11.133 2 0.028 0.043 12.021 1.548 0.884 LGA G 29 G 29 7.748 0 0.166 0.166 8.579 7.500 7.500 LGA E 30 E 30 6.086 4 0.144 0.145 6.948 29.286 14.497 LGA W 31 W 31 2.254 9 0.623 0.586 6.166 44.524 16.293 LGA K 32 K 32 8.419 4 0.536 0.549 11.400 6.548 2.963 LGA G 33 G 33 13.591 0 0.625 0.625 15.729 0.000 0.000 LGA E 34 E 34 14.986 4 0.185 0.202 16.500 0.000 0.000 LGA D 35 D 35 14.081 3 0.604 0.585 16.940 0.000 0.000 LGA K 36 K 36 16.876 4 0.599 0.545 17.993 0.000 0.000 LGA L 37 L 37 12.986 3 0.047 0.073 16.388 0.000 0.000 LGA P 38 P 38 14.419 2 0.121 0.191 15.860 0.000 0.000 LGA S 39 S 39 18.684 1 0.105 0.143 20.763 0.000 0.000 LGA V 40 V 40 18.159 2 0.623 0.614 20.352 0.000 0.000 LGA R 41 R 41 16.899 6 0.098 0.101 17.303 0.000 0.000 LGA E 42 E 42 17.654 4 0.140 0.144 18.253 0.000 0.000 LGA M 43 M 43 16.882 3 0.258 0.260 17.177 0.000 0.000 LGA G 44 G 44 16.928 0 0.367 0.367 17.275 0.000 0.000 LGA V 45 V 45 11.600 2 0.603 0.595 13.443 2.143 1.224 LGA K 46 K 46 8.977 4 0.616 0.594 11.580 9.524 4.233 LGA L 47 L 47 4.306 3 0.663 0.599 6.137 35.357 21.607 LGA A 48 A 48 2.154 0 0.451 0.454 3.541 71.310 65.714 LGA V 49 V 49 2.705 2 0.134 0.176 5.552 65.119 40.272 LGA N 50 N 50 1.802 3 0.120 0.141 3.838 81.548 46.190 LGA P 51 P 51 2.336 2 0.043 0.063 4.133 68.810 44.626 LGA N 52 N 52 2.401 3 0.168 0.168 3.538 62.857 36.845 LGA T 53 T 53 3.015 2 0.094 0.106 3.746 57.262 38.912 LGA V 54 V 54 2.490 2 0.028 0.032 2.615 66.786 46.327 LGA S 55 S 55 0.603 1 0.174 0.179 0.968 90.476 75.397 LGA R 56 R 56 2.400 6 0.033 0.038 3.585 66.786 28.225 LGA A 57 A 57 3.249 0 0.021 0.032 4.172 55.357 51.714 LGA Y 58 Y 58 2.289 7 0.096 0.104 2.519 68.810 27.698 LGA Q 59 Q 59 0.764 4 0.087 0.098 0.947 90.476 50.265 LGA E 60 E 60 0.704 4 0.081 0.085 1.154 90.595 49.312 LGA L 61 L 61 0.825 3 0.076 0.088 1.186 88.214 54.286 LGA E 62 E 62 1.128 4 0.209 0.213 2.509 77.619 43.545 LGA R 63 R 63 1.214 6 0.115 0.114 1.455 83.690 37.835 LGA A 64 A 64 1.361 0 0.051 0.056 1.927 77.143 78.000 LGA G 65 G 65 1.563 0 0.093 0.093 2.322 72.976 72.976 LGA Y 66 Y 66 3.094 7 0.666 0.612 5.263 46.071 17.976 LGA I 67 I 67 6.162 3 0.029 0.047 9.015 13.214 9.881 LGA Y 68 Y 68 13.034 7 0.028 0.054 14.540 0.000 0.000 LGA A 69 A 69 17.582 0 0.125 0.166 20.875 0.000 0.000 LGA K 70 K 70 23.272 4 0.042 0.043 24.542 0.000 0.000 LGA R 71 R 71 28.373 6 0.027 0.026 30.480 0.000 0.000 LGA G 72 G 72 30.402 0 0.215 0.215 30.402 0.000 0.000 LGA M 73 M 73 25.329 3 0.699 0.648 26.919 0.000 0.000 LGA G 74 G 74 20.447 0 0.173 0.173 22.589 0.000 0.000 LGA S 75 S 75 16.860 1 0.116 0.156 17.443 0.000 0.000 LGA F 76 F 76 14.020 6 0.009 0.016 16.973 0.000 0.000 LGA V 77 V 77 15.096 2 0.019 0.023 16.484 0.000 0.000 LGA T 78 T 78 20.427 2 0.018 0.019 22.122 0.000 0.000 LGA S 79 S 79 22.577 1 0.221 0.283 24.404 0.000 0.000 LGA D 80 D 80 28.239 3 0.555 0.572 30.879 0.000 0.000 LGA K 81 K 81 28.921 4 0.079 0.079 29.474 0.000 0.000 LGA A 82 A 82 28.901 0 0.231 0.236 28.901 0.000 0.000 LGA L 83 L 83 29.583 3 0.059 0.066 30.387 0.000 0.000 LGA F 84 F 84 27.511 6 0.045 0.052 28.009 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 80 320 320 100.00 640 394 61.56 80 SUMMARY(RMSD_GDC): 13.798 13.782 13.826 19.146 12.316 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 80 80 4.0 21 2.24 25.625 23.346 0.896 LGA_LOCAL RMSD: 2.243 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.998 Number of assigned atoms: 80 Std_ASGN_ATOMS RMSD: 13.798 Standard rmsd on all 80 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.955379 * X + -0.233166 * Y + 0.181340 * Z + -2.843406 Y_new = 0.211942 * X + -0.113496 * Y + 0.970669 * Z + 23.648479 Z_new = -0.205746 * X + 0.965791 * Y + 0.157850 * Z + 0.130776 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.923287 0.207226 1.408788 [DEG: 167.4920 11.8732 80.7176 ] ZXZ: 2.956902 1.412284 -0.209896 [DEG: 169.4180 80.9179 -12.0261 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS444_1-D1 REMARK 2: T0586-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS444_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 80 80 4.0 21 2.24 23.346 13.80 REMARK ---------------------------------------------------------- MOLECULE T0586TS444_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT N/A ATOM 21 N ASN 5 18.824 28.892 -4.803 1.00 1.00 N ATOM 22 CA ASN 5 18.749 27.869 -5.827 1.00 1.00 C ATOM 23 C ASN 5 18.835 26.488 -5.193 1.00 1.00 C ATOM 24 O ASN 5 19.710 26.237 -4.367 1.00 1.00 O ATOM 25 CB ASN 5 19.906 28.049 -6.805 1.00 1.00 C ATOM 26 N PRO 6 17.924 25.594 -5.582 1.00 1.00 N ATOM 27 CA PRO 6 17.899 24.246 -5.052 1.00 1.00 C ATOM 28 C PRO 6 18.929 23.384 -5.766 1.00 1.00 C ATOM 29 O PRO 6 19.175 22.248 -5.368 1.00 1.00 O ATOM 30 CB PRO 6 16.511 23.648 -5.255 1.00 1.00 C ATOM 31 N THR 7 19.534 23.929 -6.826 1.00 1.00 N ATOM 32 CA THR 7 20.534 23.211 -7.590 1.00 1.00 C ATOM 33 C THR 7 21.842 23.156 -6.818 1.00 1.00 C ATOM 34 O THR 7 22.614 22.211 -6.967 1.00 1.00 O ATOM 35 CB THR 7 20.759 23.922 -8.921 1.00 1.00 C ATOM 36 N PHE 8 22.092 24.174 -5.991 1.00 1.00 N ATOM 37 CA PHE 8 23.304 24.239 -5.199 1.00 1.00 C ATOM 38 C PHE 8 23.131 23.445 -3.913 1.00 1.00 C ATOM 39 O PHE 8 24.104 22.929 -3.364 1.00 1.00 O ATOM 40 CB PHE 8 23.609 25.694 -4.859 1.00 1.00 C ATOM 41 N HIS 9 21.890 23.346 -3.432 1.00 1.00 N ATOM 42 CA HIS 9 21.595 22.617 -2.216 1.00 1.00 C ATOM 43 C HIS 9 21.366 21.146 -2.530 1.00 1.00 C ATOM 44 O HIS 9 21.954 20.274 -1.893 1.00 1.00 O ATOM 45 CB HIS 9 20.340 23.197 -1.571 1.00 1.00 C ATOM 46 N ALA 10 20.508 20.872 -3.516 1.00 1.00 N ATOM 47 CA ALA 10 20.204 19.511 -3.911 1.00 1.00 C ATOM 48 C ALA 10 21.458 18.826 -4.438 1.00 1.00 C ATOM 49 O ALA 10 21.562 17.603 -4.396 1.00 1.00 O ATOM 50 CB ALA 10 19.140 19.528 -5.004 1.00 1.00 C ATOM 51 N ASP 11 22.409 19.621 -4.933 1.00 1.00 N ATOM 52 CA ASP 11 23.648 19.092 -5.465 1.00 1.00 C ATOM 53 C ASP 11 23.974 17.760 -4.806 1.00 1.00 C ATOM 54 O ASP 11 24.496 16.856 -5.454 1.00 1.00 O ATOM 55 CB ASP 11 24.778 20.081 -5.193 1.00 1.00 C ATOM 56 N LYS 12 23.662 17.642 -3.512 1.00 1.00 N ATOM 57 CA LYS 12 23.922 16.424 -2.771 1.00 1.00 C ATOM 58 C LYS 12 22.776 16.144 -1.808 1.00 1.00 C ATOM 59 O LYS 12 22.569 15.003 -1.404 1.00 1.00 O ATOM 60 CB LYS 12 25.218 16.580 -1.982 1.00 1.00 C ATOM 61 N PRO 13 22.033 17.191 -1.443 1.00 1.00 N ATOM 62 CA PRO 13 20.915 17.056 -0.531 1.00 1.00 C ATOM 63 C PRO 13 19.614 17.405 -1.244 1.00 1.00 C ATOM 64 O PRO 13 19.633 18.032 -2.299 1.00 1.00 O ATOM 65 CB PRO 13 21.110 17.996 0.653 1.00 1.00 C ATOM 66 N ILE 14 18.485 16.995 -0.661 1.00 1.00 N ATOM 67 CA ILE 14 17.184 17.264 -1.239 1.00 1.00 C ATOM 68 C ILE 14 17.049 18.746 -1.554 1.00 1.00 C ATOM 69 O ILE 14 17.647 19.583 -0.880 1.00 1.00 O ATOM 70 CB ILE 14 16.097 16.854 -0.251 1.00 1.00 C ATOM 71 N TYR 15 16.261 19.070 -2.581 1.00 1.00 N ATOM 72 CA TYR 15 16.050 20.447 -2.982 1.00 1.00 C ATOM 73 C TYR 15 14.575 20.805 -2.868 1.00 1.00 C ATOM 74 O TYR 15 13.714 19.940 -3.002 1.00 1.00 O ATOM 75 CB TYR 15 16.504 20.628 -4.427 1.00 1.00 C ATOM 76 N SER 16 14.288 22.085 -2.621 1.00 1.00 N ATOM 77 CA SER 16 12.923 22.553 -2.491 1.00 1.00 C ATOM 78 C SER 16 12.811 23.984 -2.997 1.00 1.00 C ATOM 79 O SER 16 13.762 24.755 -2.895 1.00 1.00 O ATOM 80 CB SER 16 12.508 22.499 -1.026 1.00 1.00 C ATOM 81 N GLN 17 11.645 24.335 -3.543 1.00 1.00 N ATOM 82 CA GLN 17 11.414 25.668 -4.062 1.00 1.00 C ATOM 83 C GLN 17 10.980 26.600 -2.938 1.00 1.00 C ATOM 84 O GLN 17 10.258 26.189 -2.033 1.00 1.00 O ATOM 85 CB GLN 17 10.321 25.614 -5.124 1.00 1.00 C ATOM 86 N ILE 18 11.424 27.857 -3.001 1.00 1.00 N ATOM 87 CA ILE 18 11.081 28.840 -1.993 1.00 1.00 C ATOM 88 C ILE 18 11.504 30.228 -2.452 1.00 1.00 C ATOM 89 O ILE 18 12.104 30.376 -3.513 1.00 1.00 O ATOM 90 CB ILE 18 11.796 28.498 -0.689 1.00 1.00 C ATOM 91 N SER 19 11.187 31.245 -1.645 1.00 1.00 N ATOM 92 CA SER 19 11.534 32.615 -1.969 1.00 1.00 C ATOM 93 C SER 19 13.024 32.843 -1.753 1.00 1.00 C ATOM 94 O SER 19 13.681 32.057 -1.074 1.00 1.00 O ATOM 95 CB SER 19 10.743 33.563 -1.074 1.00 1.00 C ATOM 96 N ASP 20 13.553 33.922 -2.332 1.00 1.00 N ATOM 97 CA ASP 20 14.960 34.249 -2.202 1.00 1.00 C ATOM 98 C ASP 20 15.376 34.191 -0.739 1.00 1.00 C ATOM 99 O ASP 20 16.260 33.420 -0.374 1.00 1.00 O ATOM 100 CB ASP 20 15.204 35.654 -2.743 1.00 1.00 C ATOM 101 N TRP 21 14.735 35.011 0.097 1.00 1.00 N ATOM 102 CA TRP 21 15.041 35.052 1.513 1.00 1.00 C ATOM 103 C TRP 21 14.478 33.817 2.205 1.00 1.00 C ATOM 104 O TRP 21 14.913 33.465 3.299 1.00 1.00 O ATOM 105 CB TRP 21 14.420 36.301 2.130 1.00 1.00 C ATOM 106 N MET 22 13.511 33.160 1.561 1.00 1.00 N ATOM 107 CA MET 22 12.894 31.972 2.115 1.00 1.00 C ATOM 108 C MET 22 13.919 30.851 2.218 1.00 1.00 C ATOM 109 O MET 22 13.941 30.118 3.205 1.00 1.00 O ATOM 110 CB MET 22 11.751 31.528 1.208 1.00 1.00 C ATOM 111 N LYS 23 14.765 30.720 1.194 1.00 1.00 N ATOM 112 CA LYS 23 15.787 29.692 1.173 1.00 1.00 C ATOM 113 C LYS 23 16.100 29.234 2.590 1.00 1.00 C ATOM 114 O LYS 23 16.355 28.054 2.821 1.00 1.00 O ATOM 115 CB LYS 23 17.053 30.250 0.531 1.00 1.00 C ATOM 116 N LYS 24 16.077 30.173 3.540 1.00 1.00 N ATOM 117 CA LYS 24 16.357 29.865 4.928 1.00 1.00 C ATOM 118 C LYS 24 15.173 29.140 5.551 1.00 1.00 C ATOM 119 O LYS 24 15.339 28.083 6.156 1.00 1.00 O ATOM 120 CB LYS 24 16.616 31.159 5.691 1.00 1.00 C ATOM 121 N GLN 25 13.977 29.713 5.402 1.00 1.00 N ATOM 122 CA GLN 25 12.771 29.123 5.950 1.00 1.00 C ATOM 123 C GLN 25 12.449 27.825 5.223 1.00 1.00 C ATOM 124 O GLN 25 12.580 26.744 5.791 1.00 1.00 O ATOM 125 CB GLN 25 11.610 30.097 5.783 1.00 1.00 C ATOM 126 N MET 26 12.024 27.937 3.962 1.00 1.00 N ATOM 127 CA MET 26 11.684 26.776 3.163 1.00 1.00 C ATOM 128 C MET 26 12.800 25.745 3.236 1.00 1.00 C ATOM 129 O MET 26 12.557 24.552 3.073 1.00 1.00 O ATOM 130 CB MET 26 11.483 27.202 1.713 1.00 1.00 C ATOM 131 N ILE 27 14.027 26.210 3.484 1.00 1.00 N ATOM 132 CA ILE 27 15.174 25.329 3.579 1.00 1.00 C ATOM 133 C ILE 27 15.134 24.557 4.888 1.00 1.00 C ATOM 134 O ILE 27 15.943 23.657 5.104 1.00 1.00 O ATOM 135 CB ILE 27 16.453 26.157 3.518 1.00 1.00 C ATOM 136 N THR 28 14.190 24.911 5.764 1.00 1.00 N ATOM 137 CA THR 28 14.049 24.252 7.046 1.00 1.00 C ATOM 138 C THR 28 12.982 23.170 6.963 1.00 1.00 C ATOM 139 O THR 28 12.864 22.343 7.865 1.00 1.00 O ATOM 140 CB THR 28 13.648 25.279 8.101 1.00 1.00 C ATOM 141 N GLY 29 12.204 23.180 5.878 1.00 1.00 N ATOM 142 CA GLY 29 11.153 22.203 5.682 1.00 1.00 C ATOM 143 C GLY 29 11.745 20.886 5.199 1.00 1.00 C ATOM 144 O GLY 29 11.116 19.838 5.326 1.00 1.00 O ATOM 145 N GLU 30 12.958 20.943 4.646 1.00 1.00 N ATOM 146 CA GLU 30 13.630 19.759 4.149 1.00 1.00 C ATOM 147 C GLU 30 14.274 19.001 5.299 1.00 1.00 C ATOM 148 O GLU 30 14.727 17.872 5.124 1.00 1.00 O ATOM 149 CB GLU 30 14.706 20.173 3.149 1.00 1.00 C ATOM 150 N TRP 31 14.315 19.626 6.479 1.00 1.00 N ATOM 151 CA TRP 31 14.903 19.010 7.651 1.00 1.00 C ATOM 152 C TRP 31 14.630 17.513 7.648 1.00 1.00 C ATOM 153 O TRP 31 15.493 16.723 8.022 1.00 1.00 O ATOM 154 CB TRP 31 14.299 19.632 8.906 1.00 1.00 C ATOM 155 N LYS 32 13.426 17.125 7.223 1.00 1.00 N ATOM 156 CA LYS 32 13.043 15.729 7.173 1.00 1.00 C ATOM 157 C LYS 32 13.591 15.082 5.909 1.00 1.00 C ATOM 158 O LYS 32 14.268 14.058 5.977 1.00 1.00 O ATOM 159 CB LYS 32 11.522 15.619 7.178 1.00 1.00 C ATOM 160 N GLY 33 13.297 15.684 4.754 1.00 1.00 N ATOM 161 CA GLY 33 13.760 15.167 3.481 1.00 1.00 C ATOM 162 C GLY 33 15.249 14.861 3.552 1.00 1.00 C ATOM 163 O GLY 33 15.719 13.910 2.931 1.00 1.00 O ATOM 164 N GLU 34 15.991 15.672 4.310 1.00 1.00 N ATOM 165 CA GLU 34 17.420 15.485 4.458 1.00 1.00 C ATOM 166 C GLU 34 17.704 14.213 5.243 1.00 1.00 C ATOM 167 O GLU 34 18.625 13.471 4.912 1.00 1.00 O ATOM 168 CB GLU 34 18.011 16.679 5.201 1.00 1.00 C ATOM 169 N ASP 35 16.906 13.962 6.285 1.00 1.00 N ATOM 170 CA ASP 35 17.074 12.783 7.110 1.00 1.00 C ATOM 171 C ASP 35 16.817 11.528 6.289 1.00 1.00 C ATOM 172 O ASP 35 17.567 10.559 6.384 1.00 1.00 O ATOM 173 CB ASP 35 16.088 12.837 8.272 1.00 1.00 C ATOM 174 N LYS 36 15.753 11.550 5.481 1.00 1.00 N ATOM 175 CA LYS 36 15.403 10.418 4.647 1.00 1.00 C ATOM 176 C LYS 36 15.966 10.605 3.246 1.00 1.00 C ATOM 177 O LYS 36 15.824 9.730 2.395 1.00 1.00 O ATOM 178 CB LYS 36 13.886 10.296 4.571 1.00 1.00 C ATOM 179 N LEU 37 16.604 11.754 3.008 1.00 1.00 N ATOM 180 CA LEU 37 17.185 12.053 1.714 1.00 1.00 C ATOM 181 C LEU 37 18.027 10.878 1.233 1.00 1.00 C ATOM 182 O LEU 37 18.626 10.172 2.041 1.00 1.00 O ATOM 183 CB LEU 37 18.065 13.293 1.829 1.00 1.00 C ATOM 184 N PRO 38 18.069 10.674 -0.085 1.00 1.00 N ATOM 185 CA PRO 38 18.834 9.590 -0.667 1.00 1.00 C ATOM 186 C PRO 38 20.312 9.952 -0.700 1.00 1.00 C ATOM 187 O PRO 38 20.724 10.943 -0.101 1.00 1.00 O ATOM 188 CB PRO 38 18.344 9.332 -2.088 1.00 1.00 C ATOM 189 N SER 39 21.109 9.146 -1.405 1.00 1.00 N ATOM 190 CA SER 39 22.534 9.383 -1.515 1.00 1.00 C ATOM 191 C SER 39 22.892 9.763 -2.945 1.00 1.00 C ATOM 192 O SER 39 22.345 9.203 -3.892 1.00 1.00 O ATOM 193 CB SER 39 23.290 8.116 -1.126 1.00 1.00 C ATOM 194 N VAL 40 23.813 10.718 -3.097 1.00 1.00 N ATOM 195 CA VAL 40 24.239 11.168 -4.406 1.00 1.00 C ATOM 196 C VAL 40 24.320 9.988 -5.365 1.00 1.00 C ATOM 197 O VAL 40 24.475 8.847 -4.935 1.00 1.00 O ATOM 198 CB VAL 40 25.613 11.822 -4.293 1.00 1.00 C ATOM 199 N ARG 41 24.215 10.269 -6.665 1.00 1.00 N ATOM 200 CA ARG 41 24.278 9.234 -7.679 1.00 1.00 C ATOM 201 C ARG 41 25.246 8.141 -7.251 1.00 1.00 C ATOM 202 O ARG 41 25.159 7.012 -7.729 1.00 1.00 O ATOM 203 CB ARG 41 24.749 9.842 -8.995 1.00 1.00 C ATOM 204 N GLU 42 26.170 8.480 -6.351 1.00 1.00 N ATOM 205 CA GLU 42 27.150 7.530 -5.863 1.00 1.00 C ATOM 206 C GLU 42 26.532 6.646 -4.790 1.00 1.00 C ATOM 207 O GLU 42 27.084 5.600 -4.451 1.00 1.00 O ATOM 208 CB GLU 42 28.336 8.285 -5.272 1.00 1.00 C ATOM 209 N MET 43 25.384 7.068 -4.255 1.00 1.00 N ATOM 210 CA MET 43 24.696 6.314 -3.226 1.00 1.00 C ATOM 211 C MET 43 23.815 5.248 -3.858 1.00 1.00 C ATOM 212 O MET 43 22.961 4.669 -3.190 1.00 1.00 O ATOM 213 CB MET 43 23.833 7.261 -2.399 1.00 1.00 C ATOM 214 N GLY 44 24.024 4.990 -5.152 1.00 1.00 N ATOM 215 CA GLY 44 23.249 3.997 -5.870 1.00 1.00 C ATOM 216 C GLY 44 21.763 4.215 -5.626 1.00 1.00 C ATOM 217 O GLY 44 20.991 3.260 -5.595 1.00 1.00 O ATOM 218 N VAL 45 21.366 5.478 -5.454 1.00 1.00 N ATOM 219 CA VAL 45 19.978 5.818 -5.215 1.00 1.00 C ATOM 220 C VAL 45 19.279 6.124 -6.531 1.00 1.00 C ATOM 221 O VAL 45 19.825 6.830 -7.375 1.00 1.00 O ATOM 222 CB VAL 45 19.907 7.043 -4.308 1.00 1.00 C ATOM 223 N LYS 46 18.068 5.589 -6.704 1.00 1.00 N ATOM 224 CA LYS 46 17.300 5.806 -7.914 1.00 1.00 C ATOM 225 C LYS 46 16.121 6.725 -7.628 1.00 1.00 C ATOM 226 O LYS 46 15.355 6.484 -6.699 1.00 1.00 O ATOM 227 CB LYS 46 16.786 4.468 -8.433 1.00 1.00 C ATOM 228 N LEU 47 15.977 7.779 -8.435 1.00 1.00 N ATOM 229 CA LEU 47 14.894 8.728 -8.269 1.00 1.00 C ATOM 230 C LEU 47 14.339 9.130 -9.627 1.00 1.00 C ATOM 231 O LEU 47 15.097 9.321 -10.577 1.00 1.00 O ATOM 232 CB LEU 47 15.413 9.967 -7.547 1.00 1.00 C ATOM 233 N ALA 48 13.013 9.256 -9.718 1.00 1.00 N ATOM 234 CA ALA 48 12.363 9.632 -10.957 1.00 1.00 C ATOM 235 C ALA 48 11.875 11.071 -10.875 1.00 1.00 C ATOM 236 O ALA 48 11.404 11.510 -9.829 1.00 1.00 O ATOM 237 CB ALA 48 11.174 8.709 -11.205 1.00 1.00 C ATOM 238 N VAL 49 11.988 11.805 -11.986 1.00 1.00 N ATOM 239 CA VAL 49 11.559 13.188 -12.035 1.00 1.00 C ATOM 240 C VAL 49 10.043 13.263 -12.129 1.00 1.00 C ATOM 241 O VAL 49 9.456 12.813 -13.109 1.00 1.00 O ATOM 242 CB VAL 49 12.174 13.863 -13.257 1.00 1.00 C ATOM 243 N ASN 50 9.409 13.838 -11.102 1.00 1.00 N ATOM 244 CA ASN 50 7.967 13.972 -11.071 1.00 1.00 C ATOM 245 C ASN 50 7.563 15.380 -11.478 1.00 1.00 C ATOM 246 O ASN 50 7.711 16.319 -10.699 1.00 1.00 O ATOM 247 CB ASN 50 7.464 13.689 -9.658 1.00 1.00 C ATOM 248 N PRO 51 7.050 15.526 -12.701 1.00 1.00 N ATOM 249 CA PRO 51 6.627 16.816 -13.207 1.00 1.00 C ATOM 250 C PRO 51 5.490 17.364 -12.355 1.00 1.00 C ATOM 251 O PRO 51 5.210 18.561 -12.387 1.00 1.00 O ATOM 252 CB PRO 51 6.153 16.665 -14.648 1.00 1.00 C ATOM 253 N ASN 52 4.837 16.484 -11.593 1.00 1.00 N ATOM 254 CA ASN 52 3.736 16.881 -10.738 1.00 1.00 C ATOM 255 C ASN 52 4.138 16.755 -9.275 1.00 1.00 C ATOM 256 O ASN 52 3.364 17.099 -8.386 1.00 1.00 O ATOM 257 CB ASN 52 2.535 15.981 -11.012 1.00 1.00 C ATOM 258 N THR 53 5.353 16.257 -9.030 1.00 1.00 N ATOM 259 CA THR 53 5.852 16.088 -7.681 1.00 1.00 C ATOM 260 C THR 53 6.115 17.446 -7.046 1.00 1.00 C ATOM 261 O THR 53 5.533 17.774 -6.015 1.00 1.00 O ATOM 262 CB THR 53 7.150 15.288 -7.719 1.00 1.00 C ATOM 263 N VAL 54 6.996 18.236 -7.666 1.00 1.00 N ATOM 264 CA VAL 54 7.333 19.552 -7.162 1.00 1.00 C ATOM 265 C VAL 54 6.083 20.418 -7.087 1.00 1.00 C ATOM 266 O VAL 54 5.932 21.215 -6.163 1.00 1.00 O ATOM 267 CB VAL 54 8.347 20.206 -8.093 1.00 1.00 C ATOM 268 N SER 55 5.188 20.261 -8.064 1.00 1.00 N ATOM 269 CA SER 55 3.957 21.027 -8.108 1.00 1.00 C ATOM 270 C SER 55 2.967 20.483 -7.089 1.00 1.00 C ATOM 271 O SER 55 1.908 21.069 -6.876 1.00 1.00 O ATOM 272 CB SER 55 3.350 20.928 -9.502 1.00 1.00 C ATOM 273 N ARG 56 3.315 19.360 -6.457 1.00 1.00 N ATOM 274 CA ARG 56 2.459 18.740 -5.465 1.00 1.00 C ATOM 275 C ARG 56 2.723 19.349 -4.095 1.00 1.00 C ATOM 276 O ARG 56 1.790 19.592 -3.333 1.00 1.00 O ATOM 277 CB ARG 56 2.744 17.244 -5.415 1.00 1.00 C ATOM 278 N ALA 57 3.998 19.595 -3.785 1.00 1.00 N ATOM 279 CA ALA 57 4.380 20.172 -2.513 1.00 1.00 C ATOM 280 C ALA 57 3.753 21.550 -2.354 1.00 1.00 C ATOM 281 O ALA 57 3.205 21.866 -1.300 1.00 1.00 O ATOM 282 CB ALA 57 5.898 20.297 -2.449 1.00 1.00 C ATOM 283 N TYR 58 3.835 22.368 -3.405 1.00 1.00 N ATOM 284 CA TYR 58 3.278 23.706 -3.382 1.00 1.00 C ATOM 285 C TYR 58 1.757 23.638 -3.326 1.00 1.00 C ATOM 286 O TYR 58 1.145 24.159 -2.398 1.00 1.00 O ATOM 287 CB TYR 58 3.705 24.455 -4.638 1.00 1.00 C ATOM 288 N GLN 59 1.152 22.992 -4.326 1.00 1.00 N ATOM 289 CA GLN 59 -0.290 22.860 -4.389 1.00 1.00 C ATOM 290 C GLN 59 -0.808 22.177 -3.130 1.00 1.00 C ATOM 291 O GLN 59 -1.665 22.718 -2.439 1.00 1.00 O ATOM 292 CB GLN 59 -0.668 22.025 -5.608 1.00 1.00 C ATOM 293 N GLU 60 -0.282 20.986 -2.839 1.00 1.00 N ATOM 294 CA GLU 60 -0.691 20.235 -1.668 1.00 1.00 C ATOM 295 C GLU 60 -0.307 20.990 -0.403 1.00 1.00 C ATOM 296 O GLU 60 -0.973 20.863 0.622 1.00 1.00 O ATOM 297 CB GLU 60 -0.001 18.874 -1.673 1.00 1.00 C ATOM 298 N LEU 61 0.769 21.776 -0.478 1.00 1.00 N ATOM 299 CA LEU 61 1.235 22.545 0.658 1.00 1.00 C ATOM 300 C LEU 61 0.704 23.970 0.578 1.00 1.00 C ATOM 301 O LEU 61 0.179 24.493 1.559 1.00 1.00 O ATOM 302 CB LEU 61 2.761 22.576 0.653 1.00 1.00 C ATOM 303 N GLU 62 0.838 24.594 -0.593 1.00 1.00 N ATOM 304 CA GLU 62 0.373 25.950 -0.796 1.00 1.00 C ATOM 305 C GLU 62 -1.143 25.968 -0.933 1.00 1.00 C ATOM 306 O GLU 62 -1.742 27.030 -1.083 1.00 1.00 O ATOM 307 CB GLU 62 1.002 26.518 -2.065 1.00 1.00 C ATOM 308 N ARG 63 -1.761 24.786 -0.880 1.00 1.00 N ATOM 309 CA ARG 63 -3.201 24.669 -0.997 1.00 1.00 C ATOM 310 C ARG 63 -3.844 24.721 0.381 1.00 1.00 C ATOM 311 O ARG 63 -4.686 25.577 0.643 1.00 1.00 O ATOM 312 CB ARG 63 -3.546 23.344 -1.666 1.00 1.00 C ATOM 313 N ALA 64 -3.446 23.800 1.261 1.00 1.00 N ATOM 314 CA ALA 64 -3.983 23.743 2.607 1.00 1.00 C ATOM 315 C ALA 64 -3.308 24.789 3.483 1.00 1.00 C ATOM 316 O ALA 64 -3.734 25.021 4.612 1.00 1.00 O ATOM 317 CB ALA 64 -3.735 22.357 3.192 1.00 1.00 C ATOM 318 N GLY 65 -2.255 25.419 2.959 1.00 1.00 N ATOM 319 CA GLY 65 -1.528 26.436 3.692 1.00 1.00 C ATOM 320 C GLY 65 -1.050 25.877 5.025 1.00 1.00 C ATOM 321 O GLY 65 -0.861 26.626 5.981 1.00 1.00 O ATOM 322 N TYR 66 -0.859 24.557 5.086 1.00 1.00 N ATOM 323 CA TYR 66 -0.406 23.904 6.297 1.00 1.00 C ATOM 324 C TYR 66 0.496 22.728 5.951 1.00 1.00 C ATOM 325 O TYR 66 0.283 22.054 4.944 1.00 1.00 O ATOM 326 CB TYR 66 -1.613 23.399 7.082 1.00 1.00 C ATOM 327 N ILE 67 1.506 22.483 6.788 1.00 1.00 N ATOM 328 CA ILE 67 2.435 21.392 6.570 1.00 1.00 C ATOM 329 C ILE 67 2.718 20.675 7.882 1.00 1.00 C ATOM 330 O ILE 67 2.524 21.244 8.955 1.00 1.00 O ATOM 331 CB ILE 67 3.740 21.944 6.004 1.00 1.00 C ATOM 332 N TYR 68 3.176 19.425 7.794 1.00 1.00 N ATOM 333 CA TYR 68 3.484 18.636 8.971 1.00 1.00 C ATOM 334 C TYR 68 4.963 18.756 9.308 1.00 1.00 C ATOM 335 O TYR 68 5.789 18.953 8.418 1.00 1.00 O ATOM 336 CB TYR 68 3.143 17.174 8.700 1.00 1.00 C ATOM 337 N ALA 69 5.295 18.636 10.594 1.00 1.00 N ATOM 338 CA ALA 69 6.670 18.731 11.043 1.00 1.00 C ATOM 339 C ALA 69 6.819 18.086 12.414 1.00 1.00 C ATOM 340 O ALA 69 5.857 17.546 12.956 1.00 1.00 O ATOM 341 CB ALA 69 7.071 20.199 11.129 1.00 1.00 C ATOM 342 N LYS 70 8.029 18.144 12.972 1.00 1.00 N ATOM 343 CA LYS 70 8.302 17.570 14.273 1.00 1.00 C ATOM 344 C LYS 70 8.089 18.612 15.360 1.00 1.00 C ATOM 345 O LYS 70 8.463 19.771 15.193 1.00 1.00 O ATOM 346 CB LYS 70 9.745 17.078 14.319 1.00 1.00 C ATOM 347 N ARG 71 7.481 18.198 16.476 1.00 1.00 N ATOM 348 CA ARG 71 7.221 19.095 17.583 1.00 1.00 C ATOM 349 C ARG 71 8.448 19.191 18.479 1.00 1.00 C ATOM 350 O ARG 71 9.024 18.172 18.854 1.00 1.00 O ATOM 351 CB ARG 71 6.041 18.567 18.395 1.00 1.00 C ATOM 352 N GLY 72 8.843 20.418 18.822 1.00 1.00 N ATOM 353 CA GLY 72 9.995 20.642 19.670 1.00 1.00 C ATOM 354 C GLY 72 11.270 20.262 18.933 1.00 1.00 C ATOM 355 O GLY 72 12.370 20.552 19.399 1.00 1.00 O ATOM 356 N MET 73 11.121 19.609 17.777 1.00 1.00 N ATOM 357 CA MET 73 12.257 19.193 16.980 1.00 1.00 C ATOM 358 C MET 73 12.501 20.189 15.856 1.00 1.00 C ATOM 359 O MET 73 11.717 21.116 15.666 1.00 1.00 O ATOM 360 CB MET 73 11.980 17.816 16.386 1.00 1.00 C ATOM 361 N GLY 74 13.592 19.995 15.112 1.00 1.00 N ATOM 362 CA GLY 74 13.934 20.874 14.012 1.00 1.00 C ATOM 363 C GLY 74 15.347 20.581 13.528 1.00 1.00 C ATOM 364 O GLY 74 16.195 20.154 14.308 1.00 1.00 O ATOM 365 N SER 75 15.597 20.813 12.238 1.00 1.00 N ATOM 366 CA SER 75 16.902 20.575 11.656 1.00 1.00 C ATOM 367 C SER 75 17.554 21.897 11.274 1.00 1.00 C ATOM 368 O SER 75 17.019 22.640 10.455 1.00 1.00 O ATOM 369 CB SER 75 16.751 19.708 10.410 1.00 1.00 C ATOM 370 N PHE 76 18.712 22.187 11.870 1.00 1.00 N ATOM 371 CA PHE 76 19.431 23.414 11.593 1.00 1.00 C ATOM 372 C PHE 76 20.892 23.108 11.296 1.00 1.00 C ATOM 373 O PHE 76 21.435 22.126 11.796 1.00 1.00 O ATOM 374 CB PHE 76 19.343 24.336 12.806 1.00 1.00 C ATOM 375 N VAL 77 21.526 23.952 10.479 1.00 1.00 N ATOM 376 CA VAL 77 22.918 23.769 10.119 1.00 1.00 C ATOM 377 C VAL 77 23.787 24.767 10.869 1.00 1.00 C ATOM 378 O VAL 77 23.481 25.956 10.904 1.00 1.00 O ATOM 379 CB VAL 77 23.084 23.982 8.618 1.00 1.00 C ATOM 380 N THR 78 24.874 24.280 11.471 1.00 1.00 N ATOM 381 CA THR 78 25.783 25.127 12.217 1.00 1.00 C ATOM 382 C THR 78 27.215 24.875 11.773 1.00 1.00 C ATOM 383 O THR 78 27.592 23.736 11.504 1.00 1.00 O ATOM 384 CB THR 78 25.652 24.822 13.705 1.00 1.00 C ATOM 385 N SER 79 28.013 25.941 11.698 1.00 1.00 N ATOM 386 CA SER 79 29.400 25.833 11.288 1.00 1.00 C ATOM 387 C SER 79 30.007 27.220 11.123 1.00 1.00 C ATOM 388 O SER 79 29.283 28.198 10.952 1.00 1.00 O ATOM 389 CB SER 79 29.478 25.086 9.960 1.00 1.00 C ATOM 390 N ASP 80 31.337 27.299 11.175 1.00 1.00 N ATOM 391 CA ASP 80 32.035 28.561 11.031 1.00 1.00 C ATOM 392 C ASP 80 31.630 29.238 9.729 1.00 1.00 C ATOM 393 O ASP 80 31.024 30.308 9.746 1.00 1.00 O ATOM 394 CB ASP 80 33.540 28.310 11.023 1.00 1.00 C ATOM 395 N LYS 81 31.965 28.611 8.600 1.00 1.00 N ATOM 396 CA LYS 81 31.637 29.153 7.296 1.00 1.00 C ATOM 397 C LYS 81 30.139 29.400 7.196 1.00 1.00 C ATOM 398 O LYS 81 29.694 30.206 6.381 1.00 1.00 O ATOM 399 CB LYS 81 32.060 28.162 6.215 1.00 1.00 C ATOM 400 N ALA 82 29.360 28.702 8.027 1.00 1.00 N ATOM 401 CA ALA 82 27.919 28.849 8.030 1.00 1.00 C ATOM 402 C ALA 82 27.518 30.073 8.839 1.00 1.00 C ATOM 403 O ALA 82 26.332 30.339 9.019 1.00 1.00 O ATOM 404 CB ALA 82 27.285 27.606 8.647 1.00 1.00 C ATOM 405 N LEU 83 28.511 30.820 9.327 1.00 1.00 N ATOM 406 CA LEU 83 28.260 32.012 10.112 1.00 1.00 C ATOM 407 C LEU 83 27.123 32.814 9.495 1.00 1.00 C ATOM 408 O LEU 83 26.120 33.079 10.155 1.00 1.00 O ATOM 409 CB LEU 83 29.521 32.867 10.150 1.00 1.00 C ATOM 410 N PHE 84 27.282 33.200 8.227 1.00 1.00 N ATOM 411 CA PHE 84 26.272 33.968 7.528 1.00 1.00 C ATOM 412 C PHE 84 24.884 33.453 7.883 1.00 1.00 C ATOM 413 O PHE 84 23.912 34.203 7.834 1.00 1.00 O ATOM 414 CB PHE 84 26.490 33.837 6.024 1.00 1.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 394 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 73.84 53.8 158 100.0 158 ARMSMC SECONDARY STRUCTURE . . 64.63 61.6 86 100.0 86 ARMSMC SURFACE . . . . . . . . 74.99 53.6 110 100.0 110 ARMSMC BURIED . . . . . . . . 71.14 54.2 48 100.0 48 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 68 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 63 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 39 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 53 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 45 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 21 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 16 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 13.80 (Number of atoms: 80) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 13.80 80 100.0 80 CRMSCA CRN = ALL/NP . . . . . 0.1725 CRMSCA SECONDARY STRUCTURE . . 14.12 43 100.0 43 CRMSCA SURFACE . . . . . . . . 14.55 56 100.0 56 CRMSCA BURIED . . . . . . . . 11.87 24 100.0 24 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 13.83 394 100.0 394 CRMSMC SECONDARY STRUCTURE . . 14.29 213 100.0 213 CRMSMC SURFACE . . . . . . . . 14.53 276 100.0 276 CRMSMC BURIED . . . . . . . . 12.02 118 100.0 118 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.99 74 23.1 320 CRMSSC RELIABLE SIDE CHAINS . 13.99 74 25.9 286 CRMSSC SECONDARY STRUCTURE . . 14.48 41 22.3 184 CRMSSC SURFACE . . . . . . . . 14.97 52 23.2 224 CRMSSC BURIED . . . . . . . . 11.34 22 22.9 96 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 13.83 394 61.6 640 CRMSALL SECONDARY STRUCTURE . . 14.29 213 59.8 356 CRMSALL SURFACE . . . . . . . . 14.53 276 61.6 448 CRMSALL BURIED . . . . . . . . 12.02 118 61.5 192 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.743 0.826 0.413 80 100.0 80 ERRCA SECONDARY STRUCTURE . . 11.845 0.820 0.410 43 100.0 43 ERRCA SURFACE . . . . . . . . 12.436 0.837 0.418 56 100.0 56 ERRCA BURIED . . . . . . . . 10.125 0.800 0.400 24 100.0 24 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.747 0.826 0.413 394 100.0 394 ERRMC SECONDARY STRUCTURE . . 11.957 0.819 0.410 213 100.0 213 ERRMC SURFACE . . . . . . . . 12.385 0.833 0.417 276 100.0 276 ERRMC BURIED . . . . . . . . 10.256 0.807 0.404 118 100.0 118 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.928 0.831 0.415 74 23.1 320 ERRSC RELIABLE SIDE CHAINS . 11.928 0.831 0.415 74 25.9 286 ERRSC SECONDARY STRUCTURE . . 12.189 0.826 0.413 41 22.3 184 ERRSC SURFACE . . . . . . . . 12.827 0.839 0.420 52 23.2 224 ERRSC BURIED . . . . . . . . 9.802 0.810 0.405 22 22.9 96 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.747 0.826 0.413 394 61.6 640 ERRALL SECONDARY STRUCTURE . . 11.957 0.819 0.410 213 59.8 356 ERRALL SURFACE . . . . . . . . 12.385 0.833 0.417 276 61.6 448 ERRALL BURIED . . . . . . . . 10.256 0.807 0.404 118 61.5 192 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 3 23 80 80 DISTCA CA (P) 0.00 0.00 3.75 3.75 28.75 80 DISTCA CA (RMS) 0.00 0.00 2.62 2.62 7.47 DISTCA ALL (N) 0 3 6 24 126 394 640 DISTALL ALL (P) 0.00 0.47 0.94 3.75 19.69 640 DISTALL ALL (RMS) 0.00 1.62 2.18 3.88 7.62 DISTALL END of the results output