####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 39 ( 194), selected 39 , name T0586TS373_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 39 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS373_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 85 - 123 4.47 4.47 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 85 - 112 1.97 5.61 LONGEST_CONTINUOUS_SEGMENT: 28 96 - 123 1.94 6.71 LCS_AVERAGE: 71.79 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 85 - 106 0.96 6.11 LONGEST_CONTINUOUS_SEGMENT: 22 102 - 123 0.96 7.49 LCS_AVERAGE: 56.41 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 39 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 22 28 39 12 19 21 24 26 26 27 28 29 29 30 33 33 33 36 37 38 39 39 39 LCS_GDT Q 86 Q 86 22 28 39 12 19 21 24 26 26 27 28 29 29 30 33 33 34 36 38 38 39 39 39 LCS_GDT L 87 L 87 22 28 39 12 19 22 24 26 26 27 28 29 29 31 33 33 35 37 38 38 39 39 39 LCS_GDT K 88 K 88 22 28 39 12 19 22 24 26 26 27 28 29 29 31 33 33 35 37 38 38 39 39 39 LCS_GDT K 89 K 89 22 28 39 12 19 22 24 26 26 27 28 29 29 31 33 33 35 37 38 38 39 39 39 LCS_GDT E 90 E 90 22 28 39 12 19 22 24 26 26 27 28 29 29 31 33 33 35 37 38 38 39 39 39 LCS_GDT L 91 L 91 22 28 39 12 19 22 24 26 26 27 28 29 29 31 33 33 35 37 38 38 39 39 39 LCS_GDT A 92 A 92 22 28 39 12 19 22 24 26 26 27 28 29 29 31 33 33 35 37 38 38 39 39 39 LCS_GDT D 93 D 93 22 28 39 12 19 22 24 26 26 27 28 29 29 31 33 33 35 37 38 38 39 39 39 LCS_GDT A 94 A 94 22 28 39 12 19 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT I 95 I 95 22 28 39 12 19 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT T 96 T 96 22 28 39 12 19 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT E 97 E 97 22 28 39 10 19 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT R 98 R 98 22 28 39 12 19 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT F 99 F 99 22 28 39 12 19 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT L 100 L 100 22 28 39 12 19 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT E 101 E 101 22 28 39 10 19 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT E 102 E 102 22 28 39 10 19 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT A 103 A 103 22 28 39 10 19 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT K 104 K 104 22 28 39 10 18 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT S 105 S 105 22 28 39 8 16 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT I 106 I 106 22 28 39 6 16 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT G 107 G 107 22 28 39 6 15 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT L 108 L 108 22 28 39 5 15 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT D 109 D 109 22 28 39 5 14 20 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT D 110 D 110 22 28 39 5 14 20 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT Q 111 Q 111 22 28 39 8 16 20 24 25 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT T 112 T 112 22 28 39 9 16 20 24 25 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT A 113 A 113 22 28 39 9 16 20 24 25 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT I 114 I 114 22 28 39 8 16 20 24 25 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT E 115 E 115 22 28 39 9 16 20 24 25 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT L 116 L 116 22 28 39 9 16 20 24 25 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT L 117 L 117 22 28 39 9 16 20 24 25 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 LCS_GDT I 118 I 118 22 28 39 9 16 20 24 25 26 27 28 29 30 30 31 33 35 37 38 38 39 39 39 LCS_GDT K 119 K 119 22 28 39 9 16 20 24 25 26 27 28 29 30 30 31 33 35 37 38 38 39 39 39 LCS_GDT R 120 R 120 22 28 39 9 16 20 24 25 26 27 28 29 30 30 31 33 35 37 38 38 39 39 39 LCS_GDT S 121 S 121 22 28 39 9 16 20 24 25 26 27 28 29 30 30 31 33 35 37 38 38 39 39 39 LCS_GDT R 122 R 122 22 28 39 9 16 20 24 25 26 27 28 29 30 30 31 33 34 37 38 38 39 39 39 LCS_GDT N 123 N 123 22 28 39 3 14 20 24 25 26 27 28 29 30 30 31 33 34 37 38 38 39 39 39 LCS_AVERAGE LCS_A: 76.07 ( 56.41 71.79 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 19 22 24 26 26 27 28 29 30 31 33 33 35 37 38 38 39 39 39 GDT PERCENT_AT 30.77 48.72 56.41 61.54 66.67 66.67 69.23 71.79 74.36 76.92 79.49 84.62 84.62 89.74 94.87 97.44 97.44 100.00 100.00 100.00 GDT RMS_LOCAL 0.30 0.63 1.02 1.10 1.29 1.29 1.56 1.85 2.09 2.47 3.06 3.15 3.15 3.86 4.16 4.33 4.29 4.47 4.47 4.47 GDT RMS_ALL_AT 6.70 6.34 5.80 5.99 5.88 5.88 5.76 5.65 5.52 6.18 4.76 4.99 4.99 4.48 4.55 4.49 4.48 4.47 4.47 4.47 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 2.020 3 0.023 0.053 2.292 70.833 43.512 LGA Q 86 Q 86 1.913 4 0.059 0.084 2.116 72.857 39.577 LGA L 87 L 87 1.034 3 0.025 0.026 1.352 85.952 54.286 LGA K 88 K 88 0.828 4 0.029 0.043 0.995 90.476 50.265 LGA K 89 K 89 1.419 4 0.010 0.033 1.576 81.429 44.286 LGA E 90 E 90 1.162 4 0.035 0.053 1.266 81.429 45.238 LGA L 91 L 91 0.869 3 0.026 0.046 1.115 90.476 55.417 LGA A 92 A 92 1.143 0 0.011 0.032 1.291 81.429 81.429 LGA D 93 D 93 0.816 3 0.048 0.072 0.934 90.476 56.548 LGA A 94 A 94 1.027 0 0.033 0.053 1.249 83.690 85.048 LGA I 95 I 95 1.190 3 0.025 0.034 1.294 81.429 50.893 LGA T 96 T 96 1.132 2 0.042 0.079 1.425 81.429 58.163 LGA E 97 E 97 1.169 4 0.021 0.045 1.181 81.429 45.238 LGA R 98 R 98 1.176 6 0.055 0.079 1.246 81.429 37.013 LGA F 99 F 99 1.123 6 0.046 0.047 1.162 85.952 38.658 LGA L 100 L 100 0.692 3 0.079 0.112 1.080 90.476 55.417 LGA E 101 E 101 1.182 4 0.029 0.057 1.274 81.429 45.238 LGA E 102 E 102 0.976 4 0.025 0.043 1.133 88.214 49.259 LGA A 103 A 103 0.404 0 0.054 0.053 0.650 92.857 92.381 LGA K 104 K 104 0.954 4 0.026 0.054 1.452 85.952 47.249 LGA S 105 S 105 1.513 1 0.109 0.136 1.997 75.000 62.143 LGA I 106 I 106 1.441 3 0.239 0.257 1.501 81.429 49.821 LGA G 107 G 107 1.823 0 0.179 0.179 2.259 70.833 70.833 LGA L 108 L 108 1.563 3 0.164 0.196 1.563 79.405 49.881 LGA D 109 D 109 2.316 3 0.190 0.270 3.787 66.786 38.810 LGA D 110 D 110 2.473 3 0.026 0.051 4.241 54.524 34.405 LGA Q 111 Q 111 5.211 4 0.023 0.027 6.464 27.024 14.921 LGA T 112 T 112 5.717 2 0.013 0.035 6.273 21.548 15.374 LGA A 113 A 113 4.422 0 0.028 0.047 5.698 29.048 33.238 LGA I 114 I 114 6.652 3 0.020 0.039 8.296 11.667 7.500 LGA E 115 E 115 8.515 4 0.028 0.048 9.564 3.333 2.011 LGA L 116 L 116 8.123 3 0.014 0.036 8.887 4.286 3.393 LGA L 117 L 117 8.241 3 0.024 0.034 9.789 3.452 2.619 LGA I 118 I 118 10.322 3 0.018 0.044 11.667 0.357 0.179 LGA K 119 K 119 11.217 4 0.021 0.037 12.041 0.000 0.000 LGA R 120 R 120 10.752 6 0.016 0.033 11.803 0.000 0.000 LGA S 121 S 121 11.752 1 0.041 0.062 13.027 0.000 0.000 LGA R 122 R 122 13.430 6 0.192 0.203 15.614 0.000 0.000 LGA N 123 N 123 14.088 3 0.367 0.369 17.885 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 39 156 156 100.00 313 194 61.98 39 SUMMARY(RMSD_GDC): 4.465 4.577 4.567 56.624 37.442 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 39 39 4.0 28 1.85 69.872 70.940 1.438 LGA_LOCAL RMSD: 1.847 Number of atoms: 28 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.647 Number of assigned atoms: 39 Std_ASGN_ATOMS RMSD: 4.465 Standard rmsd on all 39 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.512253 * X + -0.034716 * Y + 0.858133 * Z + -0.051795 Y_new = -0.819584 * X + -0.318372 * Y + 0.476362 * Z + 12.988558 Z_new = 0.256668 * X + -0.947330 * Y + -0.191540 * Z + 11.558562 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.012186 -0.259573 -1.770296 [DEG: -57.9940 -14.8724 -101.4305 ] ZXZ: 2.077558 1.763527 2.877007 [DEG: 119.0353 101.0427 164.8403 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS373_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS373_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 39 39 4.0 28 1.85 70.940 4.47 REMARK ---------------------------------------------------------- MOLECULE T0586TS373_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT N/A ATOM 85 N ASP 85 3.352 19.631 16.103 1.00 0.00 N ATOM 85 CA ASP 85 3.120 18.666 17.185 1.00 0.00 C ATOM 85 C ASP 85 1.680 18.147 17.138 1.00 0.00 C ATOM 85 O ASP 85 1.407 16.951 17.307 1.00 0.00 O ATOM 85 CB ASP 85 3.265 19.454 18.505 1.00 0.00 C ATOM 86 N GLN 86 0.778 19.083 16.904 1.00 0.00 N ATOM 86 CA GLN 86 -0.663 18.805 16.816 1.00 0.00 C ATOM 86 C GLN 86 -0.976 17.815 15.693 1.00 0.00 C ATOM 86 O GLN 86 -1.743 16.854 15.858 1.00 0.00 O ATOM 86 CB GLN 86 -1.353 20.142 16.476 1.00 0.00 C ATOM 87 N LEU 87 -0.362 18.082 14.555 1.00 0.00 N ATOM 87 CA LEU 87 -0.521 17.259 13.346 1.00 0.00 C ATOM 87 C LEU 87 -0.053 15.833 13.646 1.00 0.00 C ATOM 87 O LEU 87 -0.668 14.840 13.231 1.00 0.00 O ATOM 87 CB LEU 87 0.340 17.818 12.196 1.00 0.00 C ATOM 88 N LYS 88 1.046 15.769 14.373 1.00 0.00 N ATOM 88 CA LYS 88 1.668 14.498 14.775 1.00 0.00 C ATOM 88 C LYS 88 0.717 13.638 15.608 1.00 0.00 C ATOM 88 O LYS 88 0.573 12.425 15.399 1.00 0.00 O ATOM 88 CB LYS 88 2.862 14.812 15.700 1.00 0.00 C ATOM 89 N LYS 89 0.077 14.305 16.552 1.00 0.00 N ATOM 89 CA LYS 89 -0.884 13.673 17.467 1.00 0.00 C ATOM 89 C LYS 89 -2.050 13.056 16.693 1.00 0.00 C ATOM 89 O LYS 89 -2.492 11.928 16.957 1.00 0.00 O ATOM 89 CB LYS 89 -1.473 14.771 18.375 1.00 0.00 C ATOM 90 N GLU 90 -2.528 13.828 15.735 1.00 0.00 N ATOM 90 CA GLU 90 -3.648 13.432 14.869 1.00 0.00 C ATOM 90 C GLU 90 -3.284 12.143 14.128 1.00 0.00 C ATOM 90 O GLU 90 -4.099 11.221 13.977 1.00 0.00 O ATOM 90 CB GLU 90 -3.887 14.561 13.846 1.00 0.00 C ATOM 91 N LEU 91 -2.045 12.112 13.676 1.00 0.00 N ATOM 91 CA LEU 91 -1.489 10.970 12.937 1.00 0.00 C ATOM 91 C LEU 91 -1.556 9.700 13.788 1.00 0.00 C ATOM 91 O LEU 91 -1.907 8.610 13.314 1.00 0.00 O ATOM 91 CB LEU 91 0.013 11.235 12.706 1.00 0.00 C ATOM 92 N ALA 92 -1.210 9.879 15.050 1.00 0.00 N ATOM 92 CA ALA 92 -1.204 8.793 16.040 1.00 0.00 C ATOM 92 C ALA 92 -2.597 8.170 16.159 1.00 0.00 C ATOM 92 O ALA 92 -2.768 6.944 16.210 1.00 0.00 O ATOM 92 CB ALA 92 -0.849 9.395 17.415 1.00 0.00 C ATOM 93 N ASP 93 -3.578 9.054 16.200 1.00 0.00 N ATOM 93 CA ASP 93 -4.994 8.673 16.311 1.00 0.00 C ATOM 93 C ASP 93 -5.461 7.811 15.136 1.00 0.00 C ATOM 93 O ASP 93 -6.083 6.754 15.303 1.00 0.00 O ATOM 93 CB ASP 93 -5.823 9.975 16.284 1.00 0.00 C ATOM 94 N ALA 94 -5.140 8.298 13.952 1.00 0.00 N ATOM 94 CA ALA 94 -5.491 7.631 12.688 1.00 0.00 C ATOM 94 C ALA 94 -4.839 6.249 12.630 1.00 0.00 C ATOM 94 O ALA 94 -5.469 5.240 12.273 1.00 0.00 O ATOM 94 CB ALA 94 -4.888 8.431 11.510 1.00 0.00 C ATOM 95 N ILE 95 -3.569 6.243 12.989 1.00 0.00 N ATOM 95 CA ILE 95 -2.753 5.023 13.005 1.00 0.00 C ATOM 95 C ILE 95 -3.380 4.033 13.989 1.00 0.00 C ATOM 95 O ILE 95 -3.441 2.818 13.750 1.00 0.00 O ATOM 95 CB ILE 95 -1.328 5.379 13.475 1.00 0.00 C ATOM 96 N THR 96 -3.841 4.591 15.093 1.00 0.00 N ATOM 96 CA THR 96 -4.482 3.824 16.171 1.00 0.00 C ATOM 96 C THR 96 -5.710 3.065 15.663 1.00 0.00 C ATOM 96 O THR 96 -5.913 1.878 15.949 1.00 0.00 O ATOM 96 CB THR 96 -4.986 4.852 17.207 1.00 0.00 C ATOM 97 N GLU 97 -6.514 3.787 14.904 1.00 0.00 N ATOM 97 CA GLU 97 -7.751 3.255 14.310 1.00 0.00 C ATOM 97 C GLU 97 -7.460 2.103 13.347 1.00 0.00 C ATOM 97 O GLU 97 -8.062 1.020 13.415 1.00 0.00 O ATOM 97 CB GLU 97 -8.377 4.394 13.477 1.00 0.00 C ATOM 98 N ARG 98 -6.523 2.373 12.456 1.00 0.00 N ATOM 98 CA ARG 98 -6.088 1.409 11.436 1.00 0.00 C ATOM 98 C ARG 98 -5.488 0.141 12.049 1.00 0.00 C ATOM 98 O ARG 98 -5.817 -0.991 11.666 1.00 0.00 O ATOM 98 CB ARG 98 -4.982 2.110 10.623 1.00 0.00 C ATOM 99 N PHE 99 -4.606 0.371 13.003 1.00 0.00 N ATOM 99 CA PHE 99 -3.909 -0.703 13.725 1.00 0.00 C ATOM 99 C PHE 99 -4.880 -1.650 14.437 1.00 0.00 C ATOM 99 O PHE 99 -4.745 -2.880 14.396 1.00 0.00 O ATOM 99 CB PHE 99 -3.051 -0.018 14.802 1.00 0.00 C ATOM 100 N LEU 100 -5.853 -1.037 15.084 1.00 0.00 1 ATOM 100 CA LEU 100 -6.896 -1.755 15.834 1.00 0.00 1 ATOM 100 C LEU 100 -7.742 -2.737 15.020 1.00 0.00 1 ATOM 100 O LEU 100 -7.907 -3.913 15.373 1.00 0.00 1 ATOM 100 CB LEU 100 -7.881 -0.671 16.307 1.00 0.00 1 ATOM 101 N GLU 101 -8.266 -2.217 13.924 1.00 0.00 1 ATOM 101 CA GLU 101 -9.111 -2.984 12.996 1.00 0.00 1 ATOM 101 C GLU 101 -8.326 -4.162 12.418 1.00 0.00 1 ATOM 101 O GLU 101 -8.805 -5.305 12.359 1.00 0.00 1 ATOM 101 CB GLU 101 -9.495 -2.044 11.833 1.00 0.00 1 ATOM 102 N GLU 102 -7.116 -3.845 11.997 1.00 0.00 1 ATOM 102 CA GLU 102 -6.193 -4.823 11.406 1.00 0.00 1 ATOM 102 C GLU 102 -5.903 -5.912 12.442 1.00 0.00 1 ATOM 102 O GLU 102 -5.844 -7.111 12.134 1.00 0.00 1 ATOM 102 CB GLU 102 -4.871 -4.097 11.085 1.00 0.00 1 ATOM 103 N ALA 103 -5.727 -5.456 13.668 1.00 0.00 1 ATOM 103 CA ALA 103 -5.438 -6.329 14.814 1.00 0.00 1 ATOM 103 C ALA 103 -6.558 -7.364 14.969 1.00 0.00 1 ATOM 103 O ALA 103 -6.324 -8.543 15.264 1.00 0.00 1 ATOM 103 CB ALA 103 -5.464 -5.432 16.067 1.00 0.00 1 ATOM 104 N LYS 104 -7.768 -6.883 14.760 1.00 0.00 1 ATOM 104 CA LYS 104 -8.987 -7.704 14.855 1.00 0.00 1 ATOM 104 C LYS 104 -8.861 -8.886 13.894 1.00 0.00 1 ATOM 104 O LYS 104 -9.232 -10.028 14.203 1.00 0.00 1 ATOM 104 CB LYS 104 -10.139 -6.809 14.354 1.00 0.00 1 ATOM 105 N SER 105 -8.328 -8.575 12.727 1.00 0.00 1 ATOM 105 CA SER 105 -8.116 -9.558 11.655 1.00 0.00 1 ATOM 105 C SER 105 -7.185 -10.681 12.124 1.00 0.00 1 ATOM 105 O SER 105 -7.391 -11.868 11.831 1.00 0.00 1 ATOM 105 CB SER 105 -7.416 -8.816 10.502 1.00 0.00 1 ATOM 106 N ILE 106 -6.167 -10.265 12.853 1.00 0.00 1 ATOM 106 CA ILE 106 -5.153 -11.175 13.405 1.00 0.00 1 ATOM 106 C ILE 106 -5.627 -11.860 14.690 1.00 0.00 1 ATOM 106 O ILE 106 -5.315 -13.027 14.966 1.00 0.00 1 ATOM 106 CB ILE 106 -3.919 -10.321 13.745 1.00 0.00 1 ATOM 107 N GLY 107 -6.386 -11.097 15.456 1.00 0.00 1 ATOM 107 CA GLY 107 -6.950 -11.556 16.735 1.00 0.00 1 ATOM 107 C GLY 107 -6.057 -11.191 17.924 1.00 0.00 1 ATOM 107 O GLY 107 -5.638 -12.047 18.717 1.00 0.00 1 ATOM 108 N LEU 108 -5.786 -9.903 18.018 1.00 0.00 1 ATOM 108 CA LEU 108 -4.947 -9.335 19.083 1.00 0.00 1 ATOM 108 C LEU 108 -5.751 -8.197 19.715 1.00 0.00 1 ATOM 108 O LEU 108 -6.552 -7.517 19.058 1.00 0.00 1 ATOM 108 CB LEU 108 -3.662 -8.777 18.446 1.00 0.00 1 ATOM 109 N ASP 109 -5.511 -8.014 20.999 1.00 0.00 1 ATOM 109 CA ASP 109 -6.175 -6.975 21.800 1.00 0.00 1 ATOM 109 C ASP 109 -5.957 -5.619 21.122 1.00 0.00 1 ATOM 109 O ASP 109 -4.836 -5.098 21.042 1.00 0.00 1 ATOM 109 CB ASP 109 -5.519 -6.958 23.190 1.00 0.00 1 ATOM 110 N ASP 110 -7.057 -5.072 20.643 1.00 0.00 1 ATOM 110 CA ASP 110 -7.075 -3.770 19.952 1.00 0.00 1 ATOM 110 C ASP 110 -6.501 -2.609 20.770 1.00 0.00 1 ATOM 110 O ASP 110 -5.746 -1.764 20.270 1.00 0.00 1 ATOM 110 CB ASP 110 -8.562 -3.435 19.748 1.00 0.00 1 ATOM 111 N GLN 111 -6.883 -2.598 22.034 1.00 0.00 1 ATOM 111 CA GLN 111 -6.451 -1.572 22.996 1.00 0.00 1 ATOM 111 C GLN 111 -4.924 -1.537 23.102 1.00 0.00 1 ATOM 111 O GLN 111 -4.292 -0.471 23.124 1.00 0.00 1 ATOM 111 CB GLN 111 -7.017 -1.964 24.373 1.00 0.00 1 ATOM 112 N THR 112 -4.361 -2.729 23.165 1.00 0.00 1 ATOM 112 CA THR 112 -2.907 -2.925 23.269 1.00 0.00 1 ATOM 112 C THR 112 -2.183 -2.302 22.073 1.00 0.00 1 ATOM 112 O THR 112 -1.149 -1.635 22.205 1.00 0.00 1 ATOM 112 CB THR 112 -2.639 -4.441 23.221 1.00 0.00 1 ATOM 113 N ALA 113 -2.760 -2.544 20.909 1.00 0.00 1 ATOM 113 CA ALA 113 -2.232 -2.041 19.631 1.00 0.00 1 ATOM 113 C ALA 113 -2.121 -0.517 19.566 1.00 0.00 1 ATOM 113 O ALA 113 -1.095 0.050 19.164 1.00 0.00 1 ATOM 113 CB ALA 113 -3.275 -2.438 18.569 1.00 0.00 1 ATOM 114 N ILE 114 -3.204 0.119 19.971 1.00 0.00 1 ATOM 114 CA ILE 114 -3.313 1.586 19.989 1.00 0.00 1 ATOM 114 C ILE 114 -2.215 2.173 20.881 1.00 0.00 1 ATOM 114 O ILE 114 -1.584 3.190 20.561 1.00 0.00 1 ATOM 114 CB ILE 114 -4.682 1.939 20.600 1.00 0.00 1 ATOM 115 N GLU 115 -2.014 1.502 22.000 1.00 0.00 1 ATOM 115 CA GLU 115 -1.008 1.892 22.999 1.00 0.00 1 ATOM 115 C GLU 115 0.378 1.886 22.349 1.00 0.00 1 ATOM 115 O GLU 115 1.207 2.783 22.561 1.00 0.00 1 ATOM 115 CB GLU 115 -1.005 0.824 24.112 1.00 0.00 1 ATOM 116 N LEU 116 0.595 0.853 21.556 1.00 0.00 1 ATOM 116 CA LEU 116 1.858 0.651 20.831 1.00 0.00 1 ATOM 116 C LEU 116 2.123 1.836 19.901 1.00 0.00 1 ATOM 116 O LEU 116 3.251 2.340 19.784 1.00 0.00 1 ATOM 116 CB LEU 116 1.651 -0.569 19.910 1.00 0.00 1 ATOM 117 N LEU 117 1.055 2.257 19.251 1.00 0.00 1 ATOM 117 CA LEU 117 1.085 3.383 18.307 1.00 0.00 1 ATOM 117 C LEU 117 1.560 4.662 18.997 1.00 0.00 1 ATOM 117 O LEU 117 2.376 5.431 18.466 1.00 0.00 1 ATOM 117 CB LEU 117 -0.364 3.622 17.833 1.00 0.00 1 ATOM 118 N ILE 118 1.026 4.861 20.188 1.00 0.00 1 ATOM 118 CA ILE 118 1.343 6.028 21.024 1.00 0.00 1 ATOM 118 C ILE 118 2.844 6.027 21.323 1.00 0.00 1 ATOM 118 O ILE 118 3.520 7.067 21.296 1.00 0.00 1 ATOM 118 CB ILE 118 0.574 5.868 22.352 1.00 0.00 1 ATOM 119 N LYS 119 3.335 4.835 21.605 1.00 0.00 1 ATOM 119 CA LYS 119 4.752 4.608 21.921 1.00 0.00 1 ATOM 119 C LYS 119 5.677 5.012 20.771 1.00 0.00 1 ATOM 119 O LYS 119 6.694 5.696 20.955 1.00 0.00 1 ATOM 119 CB LYS 119 4.946 3.095 22.156 1.00 0.00 1 ATOM 120 N ARG 120 5.291 4.567 19.590 1.00 0.00 1 ATOM 120 CA ARG 120 6.034 4.838 18.350 1.00 0.00 1 ATOM 120 C ARG 120 6.101 6.349 18.116 1.00 0.00 1 ATOM 120 O ARG 120 7.136 6.909 17.732 1.00 0.00 1 ATOM 120 CB ARG 120 5.279 4.195 17.169 1.00 0.00 1 ATOM 121 N SER 121 4.968 6.981 18.360 1.00 0.00 1 ATOM 121 CA SER 121 4.810 8.435 18.200 1.00 0.00 1 ATOM 121 C SER 121 5.780 9.186 19.117 1.00 0.00 1 ATOM 121 O SER 121 6.407 10.182 18.733 1.00 0.00 1 ATOM 121 CB SER 121 3.383 8.790 18.657 1.00 0.00 1 ATOM 122 N ARG 122 5.877 8.675 20.330 1.00 0.00 1 ATOM 122 CA ARG 122 6.751 9.239 21.369 1.00 0.00 1 ATOM 122 C ARG 122 8.205 9.290 20.892 1.00 0.00 1 ATOM 122 O ARG 122 8.943 10.254 21.138 1.00 0.00 1 ATOM 122 CB ARG 122 6.684 8.316 22.600 1.00 0.00 1 ATOM 123 N ASN 123 8.584 8.228 20.207 1.00 0.00 1 ATOM 123 CA ASN 123 9.940 8.072 19.655 1.00 0.00 1 ATOM 123 C ASN 123 10.165 9.059 18.508 1.00 0.00 1 ATOM 123 O ASN 123 11.294 9.467 18.205 1.00 0.00 1 ATOM 123 CB ASN 123 10.062 6.641 19.104 1.00 0.00 1 TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 194 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 20.70 89.5 76 100.0 76 ARMSMC SECONDARY STRUCTURE . . 6.08 100.0 64 100.0 64 ARMSMC SURFACE . . . . . . . . 21.24 88.9 72 100.0 72 ARMSMC BURIED . . . . . . . . 4.66 100.0 4 100.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 34 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 24 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.47 (Number of atoms: 39) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.47 39 100.0 39 CRMSCA CRN = ALL/NP . . . . . 0.1145 CRMSCA SECONDARY STRUCTURE . . 4.22 32 100.0 32 CRMSCA SURFACE . . . . . . . . 4.56 37 100.0 37 CRMSCA BURIED . . . . . . . . 1.90 2 100.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.57 194 100.0 194 CRMSMC SECONDARY STRUCTURE . . 4.24 160 100.0 160 CRMSMC SURFACE . . . . . . . . 4.67 184 100.0 184 CRMSMC BURIED . . . . . . . . 2.11 10 100.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.49 38 24.2 157 CRMSSC RELIABLE SIDE CHAINS . 4.49 38 27.3 139 CRMSSC SECONDARY STRUCTURE . . 4.25 32 24.6 130 CRMSSC SURFACE . . . . . . . . 4.60 36 23.2 155 CRMSSC BURIED . . . . . . . . 1.71 2 100.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.57 194 62.0 313 CRMSALL SECONDARY STRUCTURE . . 4.24 160 62.0 258 CRMSALL SURFACE . . . . . . . . 4.67 184 60.7 303 CRMSALL BURIED . . . . . . . . 2.11 10 100.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.888 1.000 0.500 39 100.0 39 ERRCA SECONDARY STRUCTURE . . 3.796 1.000 0.500 32 100.0 32 ERRCA SURFACE . . . . . . . . 3.995 1.000 0.500 37 100.0 37 ERRCA BURIED . . . . . . . . 1.899 1.000 0.500 2 100.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.950 1.000 0.500 194 100.0 194 ERRMC SECONDARY STRUCTURE . . 3.814 1.000 0.500 160 100.0 160 ERRMC SURFACE . . . . . . . . 4.052 1.000 0.500 184 100.0 184 ERRMC BURIED . . . . . . . . 2.072 1.000 0.500 10 100.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.959 1.000 0.500 38 24.2 157 ERRSC RELIABLE SIDE CHAINS . 3.959 1.000 0.500 38 27.3 139 ERRSC SECONDARY STRUCTURE . . 3.815 1.000 0.500 32 24.6 130 ERRSC SURFACE . . . . . . . . 4.084 1.000 0.500 36 23.2 155 ERRSC BURIED . . . . . . . . 1.700 1.000 0.500 2 100.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.950 1.000 0.500 194 62.0 313 ERRALL SECONDARY STRUCTURE . . 3.814 1.000 0.500 160 62.0 258 ERRALL SURFACE . . . . . . . . 4.052 1.000 0.500 184 60.7 303 ERRALL BURIED . . . . . . . . 2.072 1.000 0.500 10 100.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 11 19 27 39 39 39 DISTCA CA (P) 0.00 28.21 48.72 69.23 100.00 39 DISTCA CA (RMS) 0.00 1.68 1.99 2.87 4.47 DISTCA ALL (N) 2 54 94 130 192 194 313 DISTALL ALL (P) 0.64 17.25 30.03 41.53 61.34 313 DISTALL ALL (RMS) 0.54 1.70 2.03 2.79 4.43 DISTALL END of the results output