####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 39 ( 156), selected 39 , name T0586TS328_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 39 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS328_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 85 - 123 1.73 1.73 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 85 - 123 1.73 1.73 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 30 94 - 123 0.96 2.58 LCS_AVERAGE: 63.64 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 39 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 5 39 39 3 16 28 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT Q 86 Q 86 6 39 39 3 4 27 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 87 L 87 6 39 39 3 13 28 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT K 88 K 88 6 39 39 3 13 28 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT K 89 K 89 6 39 39 4 7 18 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 90 E 90 6 39 39 4 18 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 91 L 91 6 39 39 4 18 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT A 92 A 92 6 39 39 4 6 9 23 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT D 93 D 93 21 39 39 4 6 10 22 30 33 35 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT A 94 A 94 30 39 39 4 6 14 29 30 33 35 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT I 95 I 95 30 39 39 6 20 28 31 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT T 96 T 96 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 97 E 97 30 39 39 15 23 29 32 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT R 98 R 98 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT F 99 F 99 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 100 L 100 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 101 E 101 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 102 E 102 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT A 103 A 103 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT K 104 K 104 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT S 105 S 105 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT I 106 I 106 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT G 107 G 107 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 108 L 108 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT D 109 D 109 30 39 39 6 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT D 110 D 110 30 39 39 9 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT Q 111 Q 111 30 39 39 10 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT T 112 T 112 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT A 113 A 113 30 39 39 6 21 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT I 114 I 114 30 39 39 6 16 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 115 E 115 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 116 L 116 30 39 39 7 17 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 117 L 117 30 39 39 7 21 28 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT I 118 I 118 30 39 39 13 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT K 119 K 119 30 39 39 7 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT R 120 R 120 30 39 39 11 21 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT S 121 S 121 30 39 39 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT R 122 R 122 30 39 39 7 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT N 123 N 123 30 39 39 6 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 LCS_AVERAGE LCS_A: 87.88 ( 63.64 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 23 29 34 37 37 37 38 39 39 39 39 39 39 39 39 39 39 39 39 GDT PERCENT_AT 38.46 58.97 74.36 87.18 94.87 94.87 94.87 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.30 0.59 0.89 1.25 1.39 1.39 1.39 1.69 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 GDT RMS_ALL_AT 2.59 2.40 1.96 1.81 1.77 1.77 1.77 1.74 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 2.247 4 0.035 0.035 2.936 64.881 32.440 LGA Q 86 Q 86 3.072 5 0.066 0.066 3.072 55.357 24.603 LGA L 87 L 87 3.016 4 0.135 0.135 3.021 55.476 27.738 LGA K 88 K 88 2.778 5 0.049 0.049 2.913 67.143 29.841 LGA K 89 K 89 1.956 5 0.086 0.086 2.045 72.976 32.434 LGA E 90 E 90 0.984 5 0.067 0.067 1.192 85.952 38.201 LGA L 91 L 91 0.852 4 0.138 0.138 0.852 90.476 45.238 LGA A 92 A 92 2.365 1 0.183 0.183 2.672 64.881 51.905 LGA D 93 D 93 4.333 4 0.022 0.022 5.211 39.405 19.702 LGA A 94 A 94 4.457 1 0.028 0.028 4.621 38.810 31.048 LGA I 95 I 95 2.219 4 0.056 0.056 2.671 66.905 33.452 LGA T 96 T 96 1.347 3 0.090 0.090 1.635 75.000 42.857 LGA E 97 E 97 1.690 5 0.024 0.024 1.690 75.000 33.333 LGA R 98 R 98 1.371 7 0.015 0.015 1.570 81.548 29.654 LGA F 99 F 99 0.842 7 0.028 0.028 1.101 90.595 32.944 LGA L 100 L 100 0.879 4 0.072 0.072 0.879 90.476 45.238 LGA E 101 E 101 0.637 5 0.030 0.030 0.766 95.238 42.328 LGA E 102 E 102 0.436 5 0.023 0.023 0.493 100.000 44.444 LGA A 103 A 103 0.411 1 0.046 0.046 0.897 95.238 76.190 LGA K 104 K 104 0.547 5 0.029 0.029 0.698 92.857 41.270 LGA S 105 S 105 0.655 2 0.076 0.076 1.231 88.214 58.810 LGA I 106 I 106 0.727 4 0.072 0.072 0.764 90.476 45.238 LGA G 107 G 107 0.843 0 0.079 0.079 0.843 90.476 90.476 LGA L 108 L 108 1.177 4 0.104 0.104 1.464 81.429 40.714 LGA D 109 D 109 1.229 4 0.033 0.033 1.229 81.429 40.714 LGA D 110 D 110 1.021 4 0.020 0.020 1.098 85.952 42.976 LGA Q 111 Q 111 0.741 5 0.028 0.028 0.869 90.476 40.212 LGA T 112 T 112 0.724 3 0.021 0.021 0.937 90.476 51.701 LGA A 113 A 113 1.457 1 0.041 0.041 1.563 79.286 63.429 LGA I 114 I 114 1.410 4 0.025 0.025 1.410 85.952 42.976 LGA E 115 E 115 0.246 5 0.029 0.029 0.569 97.619 43.386 LGA L 116 L 116 1.217 4 0.021 0.021 1.344 83.690 41.845 LGA L 117 L 117 1.464 4 0.020 0.020 1.464 85.952 42.976 LGA I 118 I 118 0.844 4 0.042 0.042 1.085 88.214 44.107 LGA K 119 K 119 1.211 5 0.055 0.055 1.266 83.690 37.196 LGA R 120 R 120 0.937 7 0.023 0.023 0.937 90.476 32.900 LGA S 121 S 121 0.597 2 0.083 0.083 1.521 86.190 57.460 LGA R 122 R 122 1.667 7 0.174 0.174 1.770 75.000 27.273 LGA N 123 N 123 1.565 4 0.334 0.334 4.378 60.000 30.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 39 156 156 100.00 313 156 49.84 39 SUMMARY(RMSD_GDC): 1.733 1.696 1.696 79.826 41.776 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 39 39 4.0 38 1.69 85.897 92.870 2.121 LGA_LOCAL RMSD: 1.692 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.741 Number of assigned atoms: 39 Std_ASGN_ATOMS RMSD: 1.733 Standard rmsd on all 39 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.684199 * X + -0.119443 * Y + 0.719448 * Z + -44.686146 Y_new = 0.729154 * X + -0.092600 * Y + 0.678056 * Z + -22.209833 Z_new = -0.014369 * X + 0.988513 * Y + 0.150449 * Z + -15.968566 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.324398 0.014369 1.419758 [DEG: 133.1782 0.8233 81.3461 ] ZXZ: 2.326585 1.419773 -0.014534 [DEG: 133.3035 81.3470 -0.8328 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS328_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS328_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 39 39 4.0 38 1.69 92.870 1.73 REMARK ---------------------------------------------------------- MOLECULE T0586TS328_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT 2ek5_C ATOM 289 N ASP 85 0.578 21.034 18.075 1.00 3.00 N ATOM 290 CA ASP 85 0.809 19.783 18.792 1.00 3.00 C ATOM 291 C ASP 85 -0.420 18.891 18.582 1.00 3.00 C ATOM 292 O ASP 85 -0.302 17.676 18.431 1.00 3.00 O ATOM 293 N GLN 86 -1.601 19.502 18.551 1.00 3.00 N ATOM 294 CA GLN 86 -2.832 18.749 18.354 1.00 3.00 C ATOM 295 C GLN 86 -2.876 18.108 16.970 1.00 3.00 C ATOM 296 O GLN 86 -3.194 16.923 16.837 1.00 3.00 O ATOM 297 N LEU 87 -2.550 18.891 15.943 1.00 3.00 N ATOM 298 CA LEU 87 -2.569 18.380 14.578 1.00 3.00 C ATOM 299 C LEU 87 -1.847 17.060 14.879 1.00 3.00 C ATOM 300 O LEU 87 -1.967 16.069 14.164 1.00 3.00 O ATOM 301 N LYS 88 -1.100 17.058 15.975 1.00 3.00 N ATOM 302 CA LYS 88 -0.383 15.925 16.542 1.00 3.00 C ATOM 303 C LYS 88 -1.076 14.582 16.386 1.00 3.00 C ATOM 304 O LYS 88 -0.531 13.564 15.957 1.00 3.00 O ATOM 305 N LYS 89 -2.356 14.717 16.760 1.00 3.00 N ATOM 306 CA LYS 89 -3.322 13.659 16.857 1.00 3.00 C ATOM 307 C LYS 89 -3.770 13.001 15.572 1.00 3.00 C ATOM 308 O LYS 89 -4.066 11.817 15.604 1.00 3.00 O ATOM 309 N GLU 90 -3.803 13.674 14.430 1.00 3.00 N ATOM 310 CA GLU 90 -4.228 13.062 13.173 1.00 3.00 C ATOM 311 C GLU 90 -3.216 11.999 12.688 1.00 3.00 C ATOM 312 O GLU 90 -3.510 11.039 11.971 1.00 3.00 O ATOM 313 N LEU 91 -1.999 12.108 13.206 1.00 3.00 N ATOM 314 CA LEU 91 -0.977 11.091 13.036 1.00 3.00 C ATOM 315 C LEU 91 -1.280 9.714 13.683 1.00 3.00 C ATOM 316 O LEU 91 -0.647 8.679 13.396 1.00 3.00 O ATOM 317 N ALA 92 -2.256 9.753 14.627 1.00 3.00 N ATOM 318 CA ALA 92 -2.767 8.612 15.379 1.00 3.00 C ATOM 319 C ALA 92 -3.228 7.973 14.071 1.00 3.00 C ATOM 320 O ALA 92 -3.424 6.762 13.997 1.00 3.00 O ATOM 321 N ASP 93 -3.395 8.800 13.043 1.00 3.00 N ATOM 322 CA ASP 93 -3.858 8.332 11.743 1.00 3.00 C ATOM 323 C ASP 93 -2.840 7.463 11.028 1.00 3.00 C ATOM 324 O ASP 93 -3.196 6.507 10.334 1.00 3.00 O ATOM 325 N ALA 94 -1.569 7.798 11.192 1.00 3.00 N ATOM 326 CA ALA 94 -0.524 7.052 10.523 1.00 3.00 C ATOM 327 C ALA 94 -0.139 5.741 11.197 1.00 3.00 C ATOM 328 O ALA 94 0.013 4.728 10.516 1.00 3.00 O ATOM 329 N ILE 95 0.004 5.735 12.517 1.00 3.00 N ATOM 330 CA ILE 95 0.413 4.509 13.195 1.00 3.00 C ATOM 331 C ILE 95 -0.612 3.811 14.069 1.00 3.00 C ATOM 332 O ILE 95 -0.680 2.588 14.092 1.00 3.00 O ATOM 333 N THR 96 -1.418 4.572 14.789 1.00 3.00 N ATOM 334 CA THR 96 -2.391 3.949 15.673 1.00 3.00 C ATOM 335 C THR 96 -3.612 3.375 14.971 1.00 3.00 C ATOM 336 O THR 96 -3.910 2.195 15.131 1.00 3.00 O ATOM 337 N GLU 97 -4.306 4.192 14.187 1.00 3.00 N ATOM 338 CA GLU 97 -5.504 3.740 13.480 1.00 3.00 C ATOM 339 C GLU 97 -5.307 2.422 12.727 1.00 3.00 C ATOM 340 O GLU 97 -6.110 1.499 12.864 1.00 3.00 O ATOM 341 N ARG 98 -4.240 2.311 11.918 1.00 3.00 N ATOM 342 CA ARG 98 -4.046 1.049 11.195 1.00 3.00 C ATOM 343 C ARG 98 -3.758 -0.131 12.132 1.00 3.00 C ATOM 344 O ARG 98 -4.243 -1.238 11.903 1.00 3.00 O ATOM 345 N PHE 99 -2.981 0.104 13.185 1.00 3.00 N ATOM 346 CA PHE 99 -2.681 -0.959 14.148 1.00 3.00 C ATOM 347 C PHE 99 -3.986 -1.516 14.733 1.00 3.00 C ATOM 348 O PHE 99 -4.164 -2.733 14.839 1.00 3.00 O ATOM 349 N LEU 100 -4.895 -0.614 15.101 1.00 3.00 N ATOM 350 CA LEU 100 -6.182 -1.001 15.675 1.00 3.00 C ATOM 351 C LEU 100 -7.042 -1.799 14.696 1.00 3.00 C ATOM 352 O LEU 100 -7.559 -2.856 15.045 1.00 3.00 O ATOM 353 N GLU 101 -7.190 -1.305 13.472 1.00 3.00 N ATOM 354 CA GLU 101 -8.011 -1.997 12.490 1.00 3.00 C ATOM 355 C GLU 101 -7.448 -3.371 12.101 1.00 3.00 C ATOM 356 O GLU 101 -8.211 -4.329 11.904 1.00 3.00 O ATOM 357 N GLU 102 -6.125 -3.469 11.984 1.00 3.00 N ATOM 358 CA GLU 102 -5.497 -4.743 11.651 1.00 3.00 C ATOM 359 C GLU 102 -5.671 -5.671 12.849 1.00 3.00 C ATOM 360 O GLU 102 -5.912 -6.863 12.696 1.00 3.00 O ATOM 361 N ALA 103 -5.544 -5.105 14.043 1.00 3.00 N ATOM 362 CA ALA 103 -5.688 -5.860 15.284 1.00 3.00 C ATOM 363 C ALA 103 -7.069 -6.528 15.380 1.00 3.00 C ATOM 364 O ALA 103 -7.194 -7.690 15.775 1.00 3.00 O ATOM 365 N LYS 104 -8.104 -5.796 14.998 1.00 3.00 N ATOM 366 CA LYS 104 -9.456 -6.335 15.050 1.00 3.00 C ATOM 367 C LYS 104 -9.637 -7.417 13.999 1.00 3.00 C ATOM 368 O LYS 104 -10.220 -8.462 14.267 1.00 3.00 O ATOM 369 N SER 105 -9.108 -7.176 12.806 1.00 3.00 N ATOM 370 CA SER 105 -9.204 -8.147 11.723 1.00 3.00 C ATOM 371 C SER 105 -8.530 -9.476 12.087 1.00 3.00 C ATOM 372 O SER 105 -8.999 -10.538 11.676 1.00 3.00 O ATOM 373 N ILE 106 -7.448 -9.421 12.864 1.00 3.00 N ATOM 374 CA ILE 106 -6.740 -10.642 13.255 1.00 3.00 C ATOM 375 C ILE 106 -7.246 -11.256 14.552 1.00 3.00 C ATOM 376 O ILE 106 -6.763 -12.300 14.976 1.00 3.00 O ATOM 377 N GLY 107 -8.206 -10.599 15.191 1.00 3.00 N ATOM 378 CA GLY 107 -8.763 -11.139 16.417 1.00 3.00 C ATOM 379 C GLY 107 -7.954 -10.914 17.682 1.00 3.00 C ATOM 380 O GLY 107 -7.903 -11.783 18.551 1.00 3.00 O ATOM 381 N LEU 108 -7.326 -9.748 17.790 1.00 3.00 N ATOM 382 CA LEU 108 -6.539 -9.406 18.965 1.00 3.00 C ATOM 383 C LEU 108 -7.370 -8.507 19.858 1.00 3.00 C ATOM 384 O LEU 108 -8.000 -7.567 19.386 1.00 3.00 O ATOM 385 N ASP 109 -7.368 -8.789 21.149 1.00 3.00 N ATOM 386 CA ASP 109 -8.108 -7.961 22.092 1.00 3.00 C ATOM 387 C ASP 109 -7.300 -6.685 22.362 1.00 3.00 C ATOM 388 O ASP 109 -6.066 -6.684 22.244 1.00 3.00 O ATOM 389 N ASP 110 -7.981 -5.603 22.729 1.00 3.00 N ATOM 390 CA ASP 110 -7.275 -4.355 23.010 1.00 3.00 C ATOM 391 C ASP 110 -6.203 -4.569 24.080 1.00 3.00 C ATOM 392 O ASP 110 -5.101 -4.024 23.987 1.00 3.00 O ATOM 393 N GLN 111 -6.528 -5.378 25.084 1.00 3.00 N ATOM 394 CA GLN 111 -5.594 -5.670 26.166 1.00 3.00 C ATOM 395 C GLN 111 -4.330 -6.303 25.608 1.00 3.00 C ATOM 396 O GLN 111 -3.218 -5.983 26.035 1.00 3.00 O ATOM 397 N THR 112 -4.502 -7.200 24.646 1.00 3.00 N ATOM 398 CA THR 112 -3.363 -7.884 24.047 1.00 3.00 C ATOM 399 C THR 112 -2.468 -6.877 23.338 1.00 3.00 C ATOM 400 O THR 112 -1.249 -6.973 23.388 1.00 3.00 O ATOM 401 N ALA 113 -3.083 -5.904 22.686 1.00 3.00 N ATOM 402 CA ALA 113 -2.326 -4.891 21.976 1.00 3.00 C ATOM 403 C ALA 113 -1.525 -4.003 22.934 1.00 3.00 C ATOM 404 O ALA 113 -0.402 -3.632 22.616 1.00 3.00 O ATOM 405 N ILE 114 -2.083 -3.674 24.103 1.00 3.00 N ATOM 406 CA ILE 114 -1.342 -2.875 25.091 1.00 3.00 C ATOM 407 C ILE 114 -0.104 -3.661 25.513 1.00 3.00 C ATOM 408 O ILE 114 0.992 -3.109 25.639 1.00 3.00 O ATOM 409 N GLU 115 -0.285 -4.960 25.730 1.00 3.00 N ATOM 410 CA GLU 115 0.825 -5.812 26.139 1.00 3.00 C ATOM 411 C GLU 115 1.869 -5.909 25.013 1.00 3.00 C ATOM 412 O GLU 115 3.079 -5.952 25.263 1.00 3.00 O ATOM 413 N LEU 116 1.400 -5.945 23.772 1.00 3.00 N ATOM 414 CA LEU 116 2.315 -6.028 22.639 1.00 3.00 C ATOM 415 C LEU 116 3.127 -4.728 22.540 1.00 3.00 C ATOM 416 O LEU 116 4.316 -4.741 22.203 1.00 3.00 O ATOM 417 N LEU 117 2.479 -3.601 22.815 1.00 3.00 N ATOM 418 CA LEU 117 3.181 -2.328 22.783 1.00 3.00 C ATOM 419 C LEU 117 4.389 -2.419 23.714 1.00 3.00 C ATOM 420 O LEU 117 5.512 -2.058 23.334 1.00 3.00 O ATOM 421 N ILE 118 4.165 -2.923 24.926 1.00 3.00 N ATOM 422 CA ILE 118 5.260 -3.039 25.884 1.00 3.00 C ATOM 423 C ILE 118 6.285 -4.111 25.515 1.00 3.00 C ATOM 424 O ILE 118 7.484 -3.926 25.730 1.00 3.00 O ATOM 425 N LYS 119 5.818 -5.226 24.961 1.00 3.00 N ATOM 426 CA LYS 119 6.719 -6.306 24.571 1.00 3.00 C ATOM 427 C LYS 119 7.706 -5.765 23.558 1.00 3.00 C ATOM 428 O LYS 119 8.910 -5.890 23.733 1.00 3.00 O ATOM 429 N ARG 120 7.184 -5.153 22.500 1.00 3.00 N ATOM 430 CA ARG 120 8.032 -4.586 21.462 1.00 3.00 C ATOM 431 C ARG 120 8.958 -3.506 22.028 1.00 3.00 C ATOM 432 O ARG 120 10.118 -3.414 21.625 1.00 3.00 O ATOM 433 N SER 121 8.466 -2.701 22.969 1.00 3.00 N ATOM 434 CA SER 121 9.303 -1.665 23.563 1.00 3.00 C ATOM 435 C SER 121 10.450 -2.344 24.305 1.00 3.00 C ATOM 436 O SER 121 11.609 -1.984 24.149 1.00 3.00 O ATOM 437 N ARG 122 10.115 -3.337 25.114 1.00 3.00 N ATOM 438 CA ARG 122 11.128 -4.059 25.858 1.00 3.00 C ATOM 439 C ARG 122 12.120 -4.791 24.957 1.00 3.00 C ATOM 440 O ARG 122 13.307 -4.859 25.279 1.00 3.00 O ATOM 441 N ASN 123 11.654 -5.323 23.826 1.00 3.00 N ATOM 442 CA ASN 123 12.562 -6.040 22.927 1.00 3.00 C ATOM 443 C ASN 123 13.647 -5.084 22.439 1.00 3.00 C ATOM 444 O ASN 123 14.779 -5.492 22.200 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 156 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 18.98 96.1 76 100.0 76 ARMSMC SECONDARY STRUCTURE . . 11.19 98.4 64 100.0 64 ARMSMC SURFACE . . . . . . . . 19.45 95.8 72 100.0 72 ARMSMC BURIED . . . . . . . . 5.95 100.0 4 100.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 34 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 24 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.73 (Number of atoms: 39) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.73 39 100.0 39 CRMSCA CRN = ALL/NP . . . . . 0.0444 CRMSCA SECONDARY STRUCTURE . . 1.80 32 100.0 32 CRMSCA SURFACE . . . . . . . . 1.76 37 100.0 37 CRMSCA BURIED . . . . . . . . 1.12 2 100.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.70 156 80.4 194 CRMSMC SECONDARY STRUCTURE . . 1.71 128 80.0 160 CRMSMC SURFACE . . . . . . . . 1.73 148 80.4 184 CRMSMC BURIED . . . . . . . . 1.14 8 80.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 157 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 139 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 130 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 155 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.70 156 49.8 313 CRMSALL SECONDARY STRUCTURE . . 1.71 128 49.6 258 CRMSALL SURFACE . . . . . . . . 1.73 148 48.8 303 CRMSALL BURIED . . . . . . . . 1.14 8 80.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.713 0.420 0.480 39 100.0 39 ERRCA SECONDARY STRUCTURE . . 1.725 0.426 0.480 32 100.0 32 ERRCA SURFACE . . . . . . . . 1.696 0.413 0.472 37 100.0 37 ERRCA BURIED . . . . . . . . 2.026 0.539 0.624 2 100.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.751 0.433 0.493 156 80.4 194 ERRMC SECONDARY STRUCTURE . . 1.778 0.444 0.499 128 80.0 160 ERRMC SURFACE . . . . . . . . 1.738 0.429 0.487 148 80.4 184 ERRMC BURIED . . . . . . . . 1.985 0.521 0.607 8 80.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 157 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 139 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 130 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 155 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.751 0.433 0.493 156 49.8 313 ERRALL SECONDARY STRUCTURE . . 1.778 0.444 0.499 128 49.6 258 ERRALL SURFACE . . . . . . . . 1.738 0.429 0.487 148 48.8 303 ERRALL BURIED . . . . . . . . 1.985 0.521 0.607 8 80.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 16 32 37 39 39 39 39 DISTCA CA (P) 41.03 82.05 94.87 100.00 100.00 39 DISTCA CA (RMS) 0.74 1.17 1.43 1.73 1.73 DISTCA ALL (N) 65 131 147 155 156 156 313 DISTALL ALL (P) 20.77 41.85 46.96 49.52 49.84 313 DISTALL ALL (RMS) 0.73 1.15 1.37 1.65 1.70 DISTALL END of the results output