####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 39 ( 272), selected 39 , name T0586TS316_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 39 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS316_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 85 - 117 4.91 8.45 LCS_AVERAGE: 83.56 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 101 - 123 1.93 16.97 LCS_AVERAGE: 54.77 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 103 - 122 0.97 17.90 LONGEST_CONTINUOUS_SEGMENT: 20 104 - 123 0.90 17.96 LCS_AVERAGE: 42.80 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 39 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 7 19 33 6 8 11 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 34 35 LCS_GDT Q 86 Q 86 7 19 33 6 6 10 14 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT L 87 L 87 8 19 33 6 6 10 14 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT K 88 K 88 13 19 33 6 6 11 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT K 89 K 89 14 19 33 6 12 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT E 90 E 90 14 19 33 6 12 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT L 91 L 91 14 19 33 9 12 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT A 92 A 92 14 19 33 9 12 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT D 93 D 93 14 19 33 9 12 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT A 94 A 94 14 19 33 9 12 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT I 95 I 95 14 19 33 9 12 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT T 96 T 96 14 19 33 9 12 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT E 97 E 97 14 19 33 9 12 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT R 98 R 98 14 19 33 9 12 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT F 99 F 99 14 19 33 6 12 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT L 100 L 100 14 19 33 6 12 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT E 101 E 101 14 23 33 6 11 15 16 19 19 21 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT E 102 E 102 14 23 33 6 12 15 20 22 22 22 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT A 103 A 103 20 23 33 5 8 18 21 22 22 22 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT K 104 K 104 20 23 33 5 8 16 21 22 22 22 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT S 105 S 105 20 23 33 5 17 18 21 22 22 22 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT I 106 I 106 20 23 33 9 17 18 21 22 22 22 22 23 24 26 28 29 30 31 31 32 34 35 35 LCS_GDT G 107 G 107 20 23 33 6 17 18 21 22 22 22 22 23 24 26 27 28 30 31 31 32 34 35 35 LCS_GDT L 108 L 108 20 23 33 10 17 18 21 22 22 22 22 23 24 26 28 29 30 31 31 32 34 35 35 LCS_GDT D 109 D 109 20 23 33 10 17 18 21 22 22 22 22 23 24 26 28 29 30 31 31 32 34 35 35 LCS_GDT D 110 D 110 20 23 33 10 17 18 21 22 22 22 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT Q 111 Q 111 20 23 33 10 17 18 21 22 22 22 22 23 25 26 28 29 30 31 31 32 34 34 35 LCS_GDT T 112 T 112 20 23 33 10 17 18 21 22 22 22 22 23 24 26 28 29 30 31 31 32 34 35 35 LCS_GDT A 113 A 113 20 23 33 10 17 18 21 22 22 22 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT I 114 I 114 20 23 33 10 17 18 21 22 22 22 22 23 25 26 28 29 30 31 31 32 34 35 35 LCS_GDT E 115 E 115 20 23 33 10 17 18 21 22 22 22 22 23 24 26 27 29 30 31 31 32 34 35 35 LCS_GDT L 116 L 116 20 23 33 10 17 18 21 22 22 22 22 23 24 25 26 27 29 29 31 32 34 35 35 LCS_GDT L 117 L 117 20 23 33 10 17 18 21 22 22 22 22 23 24 25 26 27 29 29 31 32 34 35 35 LCS_GDT I 118 I 118 20 23 32 9 17 18 21 22 22 22 22 23 24 25 26 27 29 29 31 32 34 35 35 LCS_GDT K 119 K 119 20 23 30 7 17 18 21 22 22 22 22 23 24 25 26 26 27 29 30 32 34 35 35 LCS_GDT R 120 R 120 20 23 30 9 17 18 21 22 22 22 22 23 24 25 26 26 26 28 28 29 30 32 34 LCS_GDT S 121 S 121 20 23 30 7 17 18 21 22 22 22 22 23 24 25 26 26 27 28 30 32 34 35 35 LCS_GDT R 122 R 122 20 23 30 4 13 18 21 22 22 22 22 23 24 25 26 26 27 28 30 32 34 35 35 LCS_GDT N 123 N 123 20 23 30 3 13 18 21 22 22 22 22 23 24 25 26 26 26 26 28 29 29 30 30 LCS_AVERAGE LCS_A: 60.38 ( 42.80 54.77 83.56 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 17 18 21 22 22 22 22 23 25 26 28 29 30 31 31 32 34 35 35 GDT PERCENT_AT 25.64 43.59 46.15 53.85 56.41 56.41 56.41 56.41 58.97 64.10 66.67 71.79 74.36 76.92 79.49 79.49 82.05 87.18 89.74 89.74 GDT RMS_LOCAL 0.24 0.59 0.72 1.02 1.25 1.25 1.25 1.25 1.90 2.94 3.19 3.56 3.72 3.92 4.11 4.11 4.83 5.13 5.86 5.74 GDT RMS_ALL_AT 18.61 18.27 18.10 17.82 17.47 17.47 17.47 17.47 17.04 9.80 9.69 10.38 9.92 9.87 9.38 9.38 7.67 7.95 6.86 7.06 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 42.431 3 0.025 0.026 44.102 0.000 0.000 LGA Q 86 Q 86 42.289 4 0.022 0.026 44.749 0.000 0.000 LGA L 87 L 87 38.413 3 0.012 0.013 40.335 0.000 0.000 LGA K 88 K 88 33.529 4 0.015 0.015 35.874 0.000 0.000 LGA K 89 K 89 33.090 4 0.010 0.011 35.514 0.000 0.000 LGA E 90 E 90 32.413 4 0.019 0.023 34.575 0.000 0.000 LGA L 91 L 91 28.643 3 0.021 0.022 30.406 0.000 0.000 LGA A 92 A 92 24.487 0 0.032 0.033 26.544 0.000 0.000 LGA D 93 D 93 23.419 3 0.023 0.031 25.589 0.000 0.000 LGA A 94 A 94 21.903 0 0.005 0.006 23.495 0.000 0.000 LGA I 95 I 95 17.706 3 0.023 0.023 19.583 0.000 0.000 LGA T 96 T 96 14.501 2 0.041 0.047 16.208 0.000 0.000 LGA E 97 E 97 15.276 4 0.077 0.080 17.556 0.000 0.000 LGA R 98 R 98 11.955 6 0.030 0.029 13.478 1.310 0.476 LGA F 99 F 99 8.837 6 0.054 0.060 10.323 9.762 3.593 LGA L 100 L 100 7.238 3 0.063 0.073 8.990 12.381 6.548 LGA E 101 E 101 7.585 4 0.039 0.039 9.129 15.476 7.037 LGA E 102 E 102 3.217 4 0.229 0.234 4.896 54.762 28.466 LGA A 103 A 103 1.874 0 0.050 0.053 2.520 73.214 71.524 LGA K 104 K 104 1.857 4 0.053 0.055 2.683 72.857 38.730 LGA S 105 S 105 1.299 1 0.024 0.030 1.411 83.690 69.365 LGA I 106 I 106 0.542 3 0.120 0.122 1.341 88.214 56.607 LGA G 107 G 107 1.080 0 0.043 0.043 1.258 85.952 85.952 LGA L 108 L 108 0.494 3 0.096 0.129 0.943 95.238 58.929 LGA D 109 D 109 0.981 3 0.041 0.067 1.248 90.476 55.417 LGA D 110 D 110 0.932 3 0.026 0.033 1.075 90.476 55.417 LGA Q 111 Q 111 0.691 4 0.026 0.029 0.769 90.476 50.265 LGA T 112 T 112 0.203 2 0.040 0.047 0.449 100.000 71.429 LGA A 113 A 113 0.885 0 0.021 0.021 1.098 88.214 86.857 LGA I 114 I 114 1.009 3 0.020 0.027 1.094 88.214 54.286 LGA E 115 E 115 0.424 4 0.015 0.019 0.755 92.857 52.381 LGA L 116 L 116 0.981 3 0.011 0.018 1.109 85.952 53.155 LGA L 117 L 117 1.124 3 0.016 0.022 1.270 85.952 53.155 LGA I 118 I 118 0.314 3 0.028 0.028 0.571 97.619 61.310 LGA K 119 K 119 0.845 4 0.006 0.006 1.203 90.476 49.259 LGA R 120 R 120 1.208 6 0.069 0.076 1.449 83.690 37.835 LGA S 121 S 121 0.507 1 0.017 0.019 1.005 95.238 77.063 LGA R 122 R 122 1.363 6 0.270 0.273 2.511 75.476 34.069 LGA N 123 N 123 1.696 3 0.360 0.377 4.484 60.357 34.821 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 39 156 156 100.00 313 194 61.98 39 SUMMARY(RMSD_GDC): 6.806 6.708 6.937 48.932 32.152 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 39 39 4.0 22 1.25 58.333 58.204 1.626 LGA_LOCAL RMSD: 1.253 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.471 Number of assigned atoms: 39 Std_ASGN_ATOMS RMSD: 6.806 Standard rmsd on all 39 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.802160 * X + -0.519375 * Y + 0.294601 * Z + -12.065295 Y_new = 0.251750 * X + 0.741557 * Y + 0.621864 * Z + -28.167953 Z_new = -0.541444 * X + -0.424668 * Y + 0.725600 * Z + 17.154800 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.304106 0.572154 -0.529515 [DEG: 17.4240 32.7820 -30.3389 ] ZXZ: 2.699173 0.758891 -2.235906 [DEG: 154.6512 43.4812 -128.1080 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS316_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS316_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 39 39 4.0 22 1.25 58.204 6.81 REMARK ---------------------------------------------------------- MOLECULE T0586TS316_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT N/A ATOM 579 N ASP 85 12.588 -21.559 21.468 1.00 0.00 N ATOM 580 CA ASP 85 13.419 -20.462 21.950 1.00 0.00 C ATOM 581 C ASP 85 13.847 -19.552 20.806 1.00 0.00 C ATOM 582 O ASP 85 13.821 -18.327 20.932 1.00 0.00 O ATOM 583 CB ASP 85 14.650 -21.004 22.680 1.00 0.00 C ATOM 584 CEN ASP 85 14.982 -21.196 23.625 1.00 0.00 C ATOM 585 H ASP 85 12.933 -22.506 21.538 1.00 0.00 H ATOM 586 N GLN 86 14.241 -20.157 19.691 1.00 0.00 N ATOM 587 CA GLN 86 14.667 -19.401 18.519 1.00 0.00 C ATOM 588 C GLN 86 13.500 -18.642 17.899 1.00 0.00 C ATOM 589 O GLN 86 13.657 -17.510 17.441 1.00 0.00 O ATOM 590 CB GLN 86 15.288 -20.334 17.476 1.00 0.00 C ATOM 591 CEN GLN 86 16.792 -20.919 16.812 1.00 0.00 C ATOM 592 H GLN 86 14.245 -21.166 19.654 1.00 0.00 H ATOM 593 N LEU 87 12.330 -19.272 17.889 1.00 0.00 N ATOM 594 CA LEU 87 11.131 -18.650 17.339 1.00 0.00 C ATOM 595 C LEU 87 10.704 -17.447 18.169 1.00 0.00 C ATOM 596 O LEU 87 10.369 -16.394 17.626 1.00 0.00 O ATOM 597 CB LEU 87 9.993 -19.675 17.259 1.00 0.00 C ATOM 598 CEN LEU 87 9.371 -20.458 16.087 1.00 0.00 C ATOM 599 H LEU 87 12.270 -20.204 18.273 1.00 0.00 H ATOM 600 N LYS 88 10.717 -17.609 19.487 1.00 0.00 N ATOM 601 CA LYS 88 10.297 -16.547 20.394 1.00 0.00 C ATOM 602 C LYS 88 11.240 -15.353 20.318 1.00 0.00 C ATOM 603 O LYS 88 10.803 -14.202 20.339 1.00 0.00 O ATOM 604 CB LYS 88 10.223 -17.067 21.830 1.00 0.00 C ATOM 605 CEN LYS 88 9.043 -17.717 23.462 1.00 0.00 C ATOM 606 H LYS 88 11.025 -18.491 19.872 1.00 0.00 H ATOM 607 N LYS 89 12.536 -15.634 20.228 1.00 0.00 N ATOM 608 CA LYS 89 13.540 -14.584 20.102 1.00 0.00 C ATOM 609 C LYS 89 13.365 -13.808 18.803 1.00 0.00 C ATOM 610 O LYS 89 13.467 -12.581 18.784 1.00 0.00 O ATOM 611 CB LYS 89 14.948 -15.178 20.173 1.00 0.00 C ATOM 612 CEN LYS 89 16.716 -15.513 21.285 1.00 0.00 C ATOM 613 H LYS 89 12.833 -16.599 20.248 1.00 0.00 H ATOM 614 N GLU 90 13.100 -14.529 17.720 1.00 0.00 N ATOM 615 CA GLU 90 12.943 -13.912 16.408 1.00 0.00 C ATOM 616 C GLU 90 11.476 -13.840 16.004 1.00 0.00 C ATOM 617 O GLU 90 11.026 -12.842 15.440 1.00 0.00 O ATOM 618 CB GLU 90 13.741 -14.684 15.354 1.00 0.00 C ATOM 619 CEN GLU 90 15.137 -14.855 14.392 1.00 0.00 C ATOM 620 H GLU 90 13.005 -15.531 17.806 1.00 0.00 H ATOM 621 N LEU 91 10.735 -14.904 16.297 1.00 0.00 N ATOM 622 CA LEU 91 9.338 -14.999 15.888 1.00 0.00 C ATOM 623 C LEU 91 8.478 -13.982 16.627 1.00 0.00 C ATOM 624 O LEU 91 7.600 -13.351 16.038 1.00 0.00 O ATOM 625 CB LEU 91 8.811 -16.419 16.130 1.00 0.00 C ATOM 626 CEN LEU 91 8.520 -17.601 15.186 1.00 0.00 C ATOM 627 H LEU 91 11.150 -15.665 16.814 1.00 0.00 H ATOM 628 N ALA 92 8.734 -13.826 17.922 1.00 0.00 N ATOM 629 CA ALA 92 7.942 -12.933 18.759 1.00 0.00 C ATOM 630 C ALA 92 7.962 -11.509 18.218 1.00 0.00 C ATOM 631 O ALA 92 6.916 -10.883 18.051 1.00 0.00 O ATOM 632 CB ALA 92 8.445 -12.966 20.194 1.00 0.00 C ATOM 633 CEN ALA 92 8.444 -12.965 20.193 1.00 0.00 C ATOM 634 H ALA 92 9.500 -14.338 18.337 1.00 0.00 H ATOM 635 N ASP 93 9.160 -11.001 17.947 1.00 0.00 N ATOM 636 CA ASP 93 9.321 -9.643 17.442 1.00 0.00 C ATOM 637 C ASP 93 8.528 -9.436 16.157 1.00 0.00 C ATOM 638 O ASP 93 7.873 -8.409 15.980 1.00 0.00 O ATOM 639 CB ASP 93 10.800 -9.330 17.205 1.00 0.00 C ATOM 640 CEN ASP 93 11.587 -8.871 17.659 1.00 0.00 C ATOM 641 H ASP 93 9.981 -11.572 18.094 1.00 0.00 H ATOM 642 N ALA 94 8.593 -10.417 15.264 1.00 0.00 N ATOM 643 CA ALA 94 7.901 -10.333 13.983 1.00 0.00 C ATOM 644 C ALA 94 6.389 -10.305 14.175 1.00 0.00 C ATOM 645 O ALA 94 5.682 -9.562 13.496 1.00 0.00 O ATOM 646 CB ALA 94 8.302 -11.495 13.087 1.00 0.00 C ATOM 647 CEN ALA 94 8.302 -11.495 13.087 1.00 0.00 C ATOM 648 H ALA 94 9.135 -11.242 15.477 1.00 0.00 H ATOM 649 N ILE 95 5.900 -11.119 15.104 1.00 0.00 N ATOM 650 CA ILE 95 4.471 -11.194 15.382 1.00 0.00 C ATOM 651 C ILE 95 3.963 -9.902 16.009 1.00 0.00 C ATOM 652 O ILE 95 2.859 -9.448 15.709 1.00 0.00 O ATOM 653 CB ILE 95 4.138 -12.373 16.315 1.00 0.00 C ATOM 654 CEN ILE 95 3.913 -13.438 16.362 1.00 0.00 C ATOM 655 H ILE 95 6.536 -11.701 15.632 1.00 0.00 H ATOM 656 N THR 96 4.775 -9.314 16.881 1.00 0.00 N ATOM 657 CA THR 96 4.426 -8.052 17.522 1.00 0.00 C ATOM 658 C THR 96 4.288 -6.934 16.498 1.00 0.00 C ATOM 659 O THR 96 3.333 -6.157 16.538 1.00 0.00 O ATOM 660 CB THR 96 5.474 -7.645 18.575 1.00 0.00 C ATOM 661 CEN THR 96 5.775 -7.743 19.065 1.00 0.00 C ATOM 662 H THR 96 5.657 -9.752 17.105 1.00 0.00 H ATOM 663 N GLU 97 5.246 -6.856 15.581 1.00 0.00 N ATOM 664 CA GLU 97 5.215 -5.851 14.524 1.00 0.00 C ATOM 665 C GLU 97 4.037 -6.075 13.584 1.00 0.00 C ATOM 666 O GLU 97 3.458 -5.123 13.063 1.00 0.00 O ATOM 667 CB GLU 97 6.527 -5.863 13.736 1.00 0.00 C ATOM 668 CEN GLU 97 8.070 -5.210 13.426 1.00 0.00 C ATOM 669 H GLU 97 6.015 -7.509 15.616 1.00 0.00 H ATOM 670 N ARG 98 3.687 -7.339 13.374 1.00 0.00 N ATOM 671 CA ARG 98 2.566 -7.690 12.510 1.00 0.00 C ATOM 672 C ARG 98 1.272 -7.804 13.306 1.00 0.00 C ATOM 673 O ARG 98 0.216 -7.356 12.861 1.00 0.00 O ATOM 674 CB ARG 98 2.836 -8.951 11.702 1.00 0.00 C ATOM 675 CEN ARG 98 3.495 -10.431 9.824 1.00 0.00 C ATOM 676 H ARG 98 4.212 -8.076 13.823 1.00 0.00 H ATOM 677 N PHE 99 1.362 -8.407 14.487 1.00 0.00 N ATOM 678 CA PHE 99 0.182 -8.685 15.297 1.00 0.00 C ATOM 679 C PHE 99 -0.517 -7.396 15.711 1.00 0.00 C ATOM 680 O PHE 99 -1.745 -7.317 15.711 1.00 0.00 O ATOM 681 CB PHE 99 0.562 -9.499 16.535 1.00 0.00 C ATOM 682 CEN PHE 99 0.552 -11.015 17.011 1.00 0.00 C ATOM 683 H PHE 99 2.271 -8.681 14.832 1.00 0.00 H ATOM 684 N LEU 100 0.273 -6.387 16.063 1.00 0.00 N ATOM 685 CA LEU 100 -0.268 -5.099 16.476 1.00 0.00 C ATOM 686 C LEU 100 -0.977 -4.402 15.322 1.00 0.00 C ATOM 687 O LEU 100 -2.092 -3.904 15.475 1.00 0.00 O ATOM 688 CB LEU 100 0.850 -4.207 17.032 1.00 0.00 C ATOM 689 CEN LEU 100 1.248 -3.798 18.463 1.00 0.00 C ATOM 690 H LEU 100 1.274 -6.517 16.043 1.00 0.00 H ATOM 691 N GLU 101 -0.324 -4.371 14.166 1.00 0.00 N ATOM 692 CA GLU 101 -0.879 -3.715 12.989 1.00 0.00 C ATOM 693 C GLU 101 -2.094 -4.467 12.461 1.00 0.00 C ATOM 694 O GLU 101 -3.037 -3.864 11.951 1.00 0.00 O ATOM 695 CB GLU 101 0.181 -3.593 11.891 1.00 0.00 C ATOM 696 CEN GLU 101 1.346 -2.668 11.061 1.00 0.00 C ATOM 697 H GLU 101 0.583 -4.813 14.100 1.00 0.00 H ATOM 698 N GLU 102 -2.063 -5.791 12.585 1.00 0.00 N ATOM 699 CA GLU 102 -3.203 -6.621 12.213 1.00 0.00 C ATOM 700 C GLU 102 -3.893 -7.193 13.445 1.00 0.00 C ATOM 701 O GLU 102 -4.788 -8.031 13.334 1.00 0.00 O ATOM 702 CB GLU 102 -2.760 -7.754 11.285 1.00 0.00 C ATOM 703 CEN GLU 102 -2.599 -8.400 9.716 1.00 0.00 C ATOM 704 H GLU 102 -1.230 -6.231 12.946 1.00 0.00 H ATOM 705 N ALA 103 -3.471 -6.736 14.618 1.00 0.00 N ATOM 706 CA ALA 103 -4.039 -7.211 15.875 1.00 0.00 C ATOM 707 C ALA 103 -5.561 -7.165 15.843 1.00 0.00 C ATOM 708 O ALA 103 -6.230 -8.082 16.320 1.00 0.00 O ATOM 709 CB ALA 103 -3.505 -6.393 17.040 1.00 0.00 C ATOM 710 CEN ALA 103 -3.506 -6.394 17.040 1.00 0.00 C ATOM 711 H ALA 103 -2.738 -6.041 14.642 1.00 0.00 H ATOM 712 N LYS 104 -6.104 -6.091 15.278 1.00 0.00 N ATOM 713 CA LYS 104 -7.549 -5.912 15.205 1.00 0.00 C ATOM 714 C LYS 104 -8.136 -6.643 14.004 1.00 0.00 C ATOM 715 O LYS 104 -9.120 -7.372 14.128 1.00 0.00 O ATOM 716 CB LYS 104 -7.902 -4.425 15.140 1.00 0.00 C ATOM 717 CEN LYS 104 -8.624 -2.692 16.113 1.00 0.00 C ATOM 718 H LYS 104 -5.499 -5.382 14.889 1.00 0.00 H ATOM 719 N SER 105 -7.525 -6.444 12.841 1.00 0.00 N ATOM 720 CA SER 105 -7.994 -7.072 11.612 1.00 0.00 C ATOM 721 C SER 105 -7.727 -8.572 11.624 1.00 0.00 C ATOM 722 O SER 105 -8.385 -9.335 10.916 1.00 0.00 O ATOM 723 CB SER 105 -7.331 -6.428 10.410 1.00 0.00 C ATOM 724 CEN SER 105 -6.946 -6.188 10.111 1.00 0.00 C ATOM 725 H SER 105 -6.714 -5.842 12.808 1.00 0.00 H ATOM 726 N ILE 106 -6.757 -8.989 12.431 1.00 0.00 N ATOM 727 CA ILE 106 -6.440 -10.405 12.579 1.00 0.00 C ATOM 728 C ILE 106 -7.336 -11.065 13.619 1.00 0.00 C ATOM 729 O ILE 106 -7.363 -12.289 13.740 1.00 0.00 O ATOM 730 CB ILE 106 -4.967 -10.614 12.976 1.00 0.00 C ATOM 731 CEN ILE 106 -3.948 -10.717 12.603 1.00 0.00 C ATOM 732 H ILE 106 -6.227 -8.308 12.955 1.00 0.00 H ATOM 733 N GLY 107 -8.068 -10.246 14.367 1.00 0.00 N ATOM 734 CA GLY 107 -8.987 -10.751 15.380 1.00 0.00 C ATOM 735 C GLY 107 -8.311 -10.846 16.740 1.00 0.00 C ATOM 736 O GLY 107 -8.833 -11.473 17.662 1.00 0.00 O ATOM 737 CEN GLY 107 -8.987 -10.751 15.380 1.00 0.00 C ATOM 738 H GLY 107 -7.984 -9.248 14.231 1.00 0.00 H ATOM 739 N LEU 108 -7.144 -10.221 16.861 1.00 0.00 N ATOM 740 CA LEU 108 -6.416 -10.195 18.123 1.00 0.00 C ATOM 741 C LEU 108 -7.139 -9.341 19.158 1.00 0.00 C ATOM 742 O LEU 108 -7.605 -8.242 18.854 1.00 0.00 O ATOM 743 CB LEU 108 -4.990 -9.672 17.902 1.00 0.00 C ATOM 744 CEN LEU 108 -3.619 -10.369 17.843 1.00 0.00 C ATOM 745 H LEU 108 -6.752 -9.753 16.057 1.00 0.00 H ATOM 746 N ASP 109 -7.230 -9.852 20.381 1.00 0.00 N ATOM 747 CA ASP 109 -7.906 -9.143 21.460 1.00 0.00 C ATOM 748 C ASP 109 -7.179 -7.851 21.810 1.00 0.00 C ATOM 749 O ASP 109 -5.960 -7.756 21.670 1.00 0.00 O ATOM 750 CB ASP 109 -8.021 -10.034 22.698 1.00 0.00 C ATOM 751 CEN ASP 109 -8.688 -10.648 23.165 1.00 0.00 C ATOM 752 H ASP 109 -6.819 -10.756 20.567 1.00 0.00 H ATOM 753 N ASP 110 -7.933 -6.858 22.268 1.00 0.00 N ATOM 754 CA ASP 110 -7.372 -5.549 22.579 1.00 0.00 C ATOM 755 C ASP 110 -6.366 -5.637 23.719 1.00 0.00 C ATOM 756 O ASP 110 -5.268 -5.088 23.634 1.00 0.00 O ATOM 757 CB ASP 110 -8.484 -4.559 22.934 1.00 0.00 C ATOM 758 CEN ASP 110 -9.044 -3.822 22.509 1.00 0.00 C ATOM 759 H ASP 110 -8.922 -7.015 22.403 1.00 0.00 H ATOM 760 N GLN 111 -6.748 -6.333 24.785 1.00 0.00 N ATOM 761 CA GLN 111 -5.873 -6.507 25.939 1.00 0.00 C ATOM 762 C GLN 111 -4.536 -7.114 25.530 1.00 0.00 C ATOM 763 O GLN 111 -3.483 -6.694 26.008 1.00 0.00 O ATOM 764 CB GLN 111 -6.544 -7.396 26.990 1.00 0.00 C ATOM 765 CEN GLN 111 -7.420 -7.395 28.500 1.00 0.00 C ATOM 766 H GLN 111 -7.666 -6.751 24.796 1.00 0.00 H ATOM 767 N THR 112 -4.587 -8.103 24.644 1.00 0.00 N ATOM 768 CA THR 112 -3.378 -8.685 24.076 1.00 0.00 C ATOM 769 C THR 112 -2.670 -7.697 23.158 1.00 0.00 C ATOM 770 O THR 112 -1.441 -7.662 23.096 1.00 0.00 O ATOM 771 CB THR 112 -3.686 -9.971 23.288 1.00 0.00 C ATOM 772 CEN THR 112 -3.894 -10.516 23.256 1.00 0.00 C ATOM 773 H THR 112 -5.488 -8.461 24.357 1.00 0.00 H ATOM 774 N ALA 113 -3.453 -6.894 22.445 1.00 0.00 N ATOM 775 CA ALA 113 -2.901 -5.869 21.567 1.00 0.00 C ATOM 776 C ALA 113 -2.136 -4.818 22.360 1.00 0.00 C ATOM 777 O ALA 113 -0.998 -4.484 22.030 1.00 0.00 O ATOM 778 CB ALA 113 -4.010 -5.219 20.751 1.00 0.00 C ATOM 779 CEN ALA 113 -4.008 -5.219 20.751 1.00 0.00 C ATOM 780 H ALA 113 -4.455 -6.996 22.513 1.00 0.00 H ATOM 781 N ILE 114 -2.767 -4.297 23.407 1.00 0.00 N ATOM 782 CA ILE 114 -2.138 -3.298 24.262 1.00 0.00 C ATOM 783 C ILE 114 -0.862 -3.840 24.896 1.00 0.00 C ATOM 784 O ILE 114 0.132 -3.125 25.020 1.00 0.00 O ATOM 785 CB ILE 114 -3.091 -2.826 25.374 1.00 0.00 C ATOM 786 CEN ILE 114 -3.889 -2.127 25.630 1.00 0.00 C ATOM 787 H ILE 114 -3.706 -4.603 23.616 1.00 0.00 H ATOM 788 N GLU 115 -0.897 -5.107 25.293 1.00 0.00 N ATOM 789 CA GLU 115 0.259 -5.749 25.908 1.00 0.00 C ATOM 790 C GLU 115 1.432 -5.818 24.939 1.00 0.00 C ATOM 791 O GLU 115 2.574 -5.548 25.312 1.00 0.00 O ATOM 792 CB GLU 115 -0.104 -7.153 26.396 1.00 0.00 C ATOM 793 CEN GLU 115 -0.551 -8.209 27.656 1.00 0.00 C ATOM 794 H GLU 115 -1.745 -5.640 25.165 1.00 0.00 H ATOM 795 N LEU 116 1.143 -6.181 23.694 1.00 0.00 N ATOM 796 CA LEU 116 2.182 -6.344 22.683 1.00 0.00 C ATOM 797 C LEU 116 2.959 -5.049 22.479 1.00 0.00 C ATOM 798 O LEU 116 4.184 -5.061 22.360 1.00 0.00 O ATOM 799 CB LEU 116 1.564 -6.811 21.359 1.00 0.00 C ATOM 800 CEN LEU 116 1.527 -8.176 20.646 1.00 0.00 C ATOM 801 H LEU 116 0.180 -6.350 23.441 1.00 0.00 H ATOM 802 N LEU 117 2.238 -3.933 22.438 1.00 0.00 N ATOM 803 CA LEU 117 2.856 -2.631 22.221 1.00 0.00 C ATOM 804 C LEU 117 3.883 -2.321 23.302 1.00 0.00 C ATOM 805 O LEU 117 4.979 -1.841 23.012 1.00 0.00 O ATOM 806 CB LEU 117 1.783 -1.536 22.174 1.00 0.00 C ATOM 807 CEN LEU 117 1.154 -0.736 21.018 1.00 0.00 C ATOM 808 H LEU 117 1.237 -3.989 22.560 1.00 0.00 H ATOM 809 N ILE 118 3.522 -2.598 24.551 1.00 0.00 N ATOM 810 CA ILE 118 4.432 -2.403 25.673 1.00 0.00 C ATOM 811 C ILE 118 5.629 -3.340 25.579 1.00 0.00 C ATOM 812 O ILE 118 6.752 -2.963 25.916 1.00 0.00 O ATOM 813 CB ILE 118 3.723 -2.625 27.021 1.00 0.00 C ATOM 814 CEN ILE 118 3.118 -2.159 27.799 1.00 0.00 C ATOM 815 H ILE 118 2.592 -2.952 24.726 1.00 0.00 H ATOM 816 N LYS 119 5.384 -4.562 25.119 1.00 0.00 N ATOM 817 CA LYS 119 6.454 -5.530 24.907 1.00 0.00 C ATOM 818 C LYS 119 7.461 -5.022 23.884 1.00 0.00 C ATOM 819 O LYS 119 8.671 -5.133 24.082 1.00 0.00 O ATOM 820 CB LYS 119 5.878 -6.873 24.454 1.00 0.00 C ATOM 821 CEN LYS 119 5.364 -8.872 24.923 1.00 0.00 C ATOM 822 H LYS 119 4.432 -4.828 24.912 1.00 0.00 H ATOM 823 N ARG 120 6.955 -4.462 22.790 1.00 0.00 N ATOM 824 CA ARG 120 7.810 -3.965 21.719 1.00 0.00 C ATOM 825 C ARG 120 8.666 -2.797 22.193 1.00 0.00 C ATOM 826 O ARG 120 9.770 -2.582 21.694 1.00 0.00 O ATOM 827 CB ARG 120 7.015 -3.603 20.472 1.00 0.00 C ATOM 828 CEN ARG 120 5.958 -3.784 18.236 1.00 0.00 C ATOM 829 H ARG 120 5.953 -4.379 22.698 1.00 0.00 H ATOM 830 N SER 121 8.149 -2.046 23.159 1.00 0.00 N ATOM 831 CA SER 121 8.915 -0.979 23.793 1.00 0.00 C ATOM 832 C SER 121 10.208 -1.512 24.395 1.00 0.00 C ATOM 833 O SER 121 11.244 -0.850 24.349 1.00 0.00 O ATOM 834 CB SER 121 8.078 -0.297 24.857 1.00 0.00 C ATOM 835 CEN SER 121 7.713 -0.239 25.257 1.00 0.00 C ATOM 836 H SER 121 7.201 -2.219 23.463 1.00 0.00 H ATOM 837 N ARG 122 10.140 -2.712 24.961 1.00 0.00 N ATOM 838 CA ARG 122 11.325 -3.379 25.487 1.00 0.00 C ATOM 839 C ARG 122 12.079 -4.114 24.386 1.00 0.00 C ATOM 840 O ARG 122 13.266 -3.875 24.167 1.00 0.00 O ATOM 841 CB ARG 122 10.995 -4.306 26.648 1.00 0.00 C ATOM 842 CEN ARG 122 10.683 -5.136 28.964 1.00 0.00 C ATOM 843 H ARG 122 9.245 -3.175 25.028 1.00 0.00 H ATOM 844 N ASN 123 11.382 -5.008 23.693 1.00 0.00 N ATOM 845 CA ASN 123 12.030 -5.958 22.797 1.00 0.00 C ATOM 846 C ASN 123 12.602 -5.256 21.570 1.00 0.00 C ATOM 847 O ASN 123 13.575 -5.718 20.976 1.00 0.00 O ATOM 848 CB ASN 123 11.077 -7.059 22.372 1.00 0.00 C ATOM 849 CEN ASN 123 10.807 -8.024 22.687 1.00 0.00 C ATOM 850 H ASN 123 10.376 -5.031 23.790 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 194 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 20.50 93.4 76 100.0 76 ARMSMC SECONDARY STRUCTURE . . 11.24 95.3 64 100.0 64 ARMSMC SURFACE . . . . . . . . 21.00 93.1 72 100.0 72 ARMSMC BURIED . . . . . . . . 6.90 100.0 4 100.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 34 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 24 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.81 (Number of atoms: 39) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.81 39 100.0 39 CRMSCA CRN = ALL/NP . . . . . 0.1745 CRMSCA SECONDARY STRUCTURE . . 6.14 32 100.0 32 CRMSCA SURFACE . . . . . . . . 6.97 37 100.0 37 CRMSCA BURIED . . . . . . . . 2.32 2 100.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.94 194 100.0 194 CRMSMC SECONDARY STRUCTURE . . 6.19 160 100.0 160 CRMSMC SURFACE . . . . . . . . 7.10 184 100.0 184 CRMSMC BURIED . . . . . . . . 2.57 10 100.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.74 38 24.2 157 CRMSSC RELIABLE SIDE CHAINS . 7.74 38 27.3 139 CRMSSC SECONDARY STRUCTURE . . 7.11 32 24.6 130 CRMSSC SURFACE . . . . . . . . 7.94 36 23.2 155 CRMSSC BURIED . . . . . . . . 1.84 2 100.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.94 194 62.0 313 CRMSALL SECONDARY STRUCTURE . . 6.19 160 62.0 258 CRMSALL SURFACE . . . . . . . . 7.10 184 60.7 303 CRMSALL BURIED . . . . . . . . 2.57 10 100.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.172 1.000 0.500 39 100.0 39 ERRCA SECONDARY STRUCTURE . . 5.602 1.000 0.500 32 100.0 32 ERRCA SURFACE . . . . . . . . 6.382 1.000 0.500 37 100.0 37 ERRCA BURIED . . . . . . . . 2.297 1.000 0.500 2 100.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.223 1.000 0.500 194 100.0 194 ERRMC SECONDARY STRUCTURE . . 5.618 1.000 0.500 160 100.0 160 ERRMC SURFACE . . . . . . . . 6.439 1.000 0.500 184 100.0 184 ERRMC BURIED . . . . . . . . 2.241 1.000 0.500 10 100.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.016 1.000 0.500 38 24.2 157 ERRSC RELIABLE SIDE CHAINS . 7.016 1.000 0.500 38 27.3 139 ERRSC SECONDARY STRUCTURE . . 6.468 1.000 0.500 32 24.6 130 ERRSC SURFACE . . . . . . . . 7.311 1.000 0.500 36 23.2 155 ERRSC BURIED . . . . . . . . 1.704 1.000 0.500 2 100.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.223 1.000 0.500 194 62.0 313 ERRALL SECONDARY STRUCTURE . . 5.618 1.000 0.500 160 62.0 258 ERRALL SURFACE . . . . . . . . 6.439 1.000 0.500 184 60.7 303 ERRALL BURIED . . . . . . . . 2.241 1.000 0.500 10 100.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 5 14 35 39 39 DISTCA CA (P) 0.00 5.13 12.82 35.90 89.74 39 DISTCA CA (RMS) 0.00 1.68 2.28 3.47 5.93 DISTCA ALL (N) 2 10 21 74 172 194 313 DISTALL ALL (P) 0.64 3.19 6.71 23.64 54.95 313 DISTALL ALL (RMS) 0.73 1.40 2.10 3.64 5.85 DISTALL END of the results output