####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 28 ( 223), selected 28 , name T0586TS311_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 28 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS311_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 85 - 112 1.06 1.06 LCS_AVERAGE: 71.79 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 85 - 112 1.06 1.06 LCS_AVERAGE: 71.79 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 85 - 110 0.91 1.08 LCS_AVERAGE: 65.02 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 28 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 26 28 28 11 20 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT Q 86 Q 86 26 28 28 11 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT L 87 L 87 26 28 28 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT K 88 K 88 26 28 28 11 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT K 89 K 89 26 28 28 11 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT E 90 E 90 26 28 28 11 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT L 91 L 91 26 28 28 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT A 92 A 92 26 28 28 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT D 93 D 93 26 28 28 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT A 94 A 94 26 28 28 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT I 95 I 95 26 28 28 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT T 96 T 96 26 28 28 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT E 97 E 97 26 28 28 11 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT R 98 R 98 26 28 28 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT F 99 F 99 26 28 28 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT L 100 L 100 26 28 28 11 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT E 101 E 101 26 28 28 11 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT E 102 E 102 26 28 28 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT A 103 A 103 26 28 28 11 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT K 104 K 104 26 28 28 11 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT S 105 S 105 26 28 28 10 15 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT I 106 I 106 26 28 28 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT G 107 G 107 26 28 28 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT L 108 L 108 26 28 28 6 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT D 109 D 109 26 28 28 5 11 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT D 110 D 110 26 28 28 5 8 17 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT Q 111 Q 111 17 28 28 4 8 12 20 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_GDT T 112 T 112 17 28 28 5 17 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 LCS_AVERAGE LCS_A: 69.54 ( 65.02 71.79 71.79 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 21 26 27 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 GDT PERCENT_AT 30.77 53.85 66.67 69.23 71.79 71.79 71.79 71.79 71.79 71.79 71.79 71.79 71.79 71.79 71.79 71.79 71.79 71.79 71.79 71.79 GDT RMS_LOCAL 0.38 0.67 0.87 0.94 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 GDT RMS_ALL_AT 1.18 1.13 1.08 1.07 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 # Checking swapping # possible swapping detected: D 85 D 85 # possible swapping detected: E 90 E 90 # possible swapping detected: E 102 E 102 # possible swapping detected: D 109 D 109 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 0.984 0 0.046 0.174 2.230 90.476 79.643 LGA Q 86 Q 86 1.222 0 0.059 1.370 6.712 85.952 61.376 LGA L 87 L 87 0.876 0 0.039 1.110 3.547 90.476 81.190 LGA K 88 K 88 0.577 0 0.028 0.860 1.904 92.857 84.603 LGA K 89 K 89 0.867 0 0.034 0.632 3.635 90.476 77.566 LGA E 90 E 90 0.905 0 0.054 0.620 3.972 90.476 68.519 LGA L 91 L 91 0.575 0 0.044 1.439 4.316 95.238 77.857 LGA A 92 A 92 0.321 0 0.026 0.040 0.460 100.000 100.000 LGA D 93 D 93 0.528 0 0.063 0.125 1.105 95.238 90.595 LGA A 94 A 94 0.361 0 0.044 0.046 0.452 100.000 100.000 LGA I 95 I 95 0.509 0 0.032 1.251 3.277 95.238 83.393 LGA T 96 T 96 0.812 0 0.052 1.121 2.324 90.476 83.129 LGA E 97 E 97 0.798 0 0.046 1.106 3.630 90.476 77.566 LGA R 98 R 98 0.548 0 0.067 1.498 5.935 95.238 69.481 LGA F 99 F 99 0.763 0 0.018 0.197 1.813 90.476 81.602 LGA L 100 L 100 1.273 0 0.065 0.974 3.036 83.690 78.631 LGA E 101 E 101 1.083 0 0.028 0.128 1.796 85.952 80.582 LGA E 102 E 102 0.431 0 0.066 0.858 2.313 97.619 85.079 LGA A 103 A 103 0.748 0 0.020 0.040 1.294 92.857 90.571 LGA K 104 K 104 1.403 0 0.030 0.668 2.386 83.690 74.074 LGA S 105 S 105 1.515 0 0.110 0.104 1.844 77.143 77.143 LGA I 106 I 106 0.928 0 0.240 1.637 4.055 83.810 74.048 LGA G 107 G 107 0.444 0 0.146 0.146 0.686 95.238 95.238 LGA L 108 L 108 0.502 0 0.119 1.398 3.538 90.595 78.452 LGA D 109 D 109 1.302 0 0.054 1.301 5.203 83.690 67.798 LGA D 110 D 110 1.846 0 0.064 1.068 5.623 68.810 53.095 LGA Q 111 Q 111 2.689 0 0.033 0.668 4.876 62.857 48.095 LGA T 112 T 112 1.231 0 0.196 1.019 2.788 79.286 75.510 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 28 112 112 100.00 222 222 100.00 39 SUMMARY(RMSD_GDC): 1.059 1.020 2.013 63.547 56.278 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 28 39 4.0 28 1.06 66.667 69.816 2.417 LGA_LOCAL RMSD: 1.059 Number of atoms: 28 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.059 Number of assigned atoms: 28 Std_ASGN_ATOMS RMSD: 1.059 Standard rmsd on all 28 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.878237 * X + -0.475072 * Y + 0.054834 * Z + 50.884964 Y_new = -0.111262 * X + 0.091464 * Y + -0.989573 * Z + 21.737562 Z_new = 0.465103 * X + -0.875181 * Y + -0.133185 * Z + 67.922531 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.015576 -0.483751 -1.721817 [DEG: -172.7798 -27.7169 -98.6529 ] ZXZ: 0.055356 1.704378 2.653113 [DEG: 3.1716 97.6537 152.0122 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS311_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS311_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 28 39 4.0 28 1.06 69.816 1.06 REMARK ---------------------------------------------------------- MOLECULE T0586TS311_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT 3by6_A ATOM 649 N ASP 85 1.572 21.076 15.959 1.00 33.76 N ATOM 650 CA ASP 85 0.736 20.316 16.844 1.00 33.76 C ATOM 651 CB ASP 85 0.031 21.197 17.891 1.00 33.76 C ATOM 652 CG ASP 85 1.075 21.751 18.854 1.00 33.76 C ATOM 653 OD1 ASP 85 2.088 21.047 19.112 1.00 33.76 O ATOM 654 OD2 ASP 85 0.867 22.889 19.351 1.00 33.76 O ATOM 655 C ASP 85 -0.339 19.630 16.057 1.00 33.76 C ATOM 656 O ASP 85 -0.639 18.459 16.285 1.00 33.76 O ATOM 657 N GLN 86 -0.949 20.348 15.097 1.00 76.04 N ATOM 658 CA GLN 86 -2.043 19.798 14.349 1.00 76.04 C ATOM 659 CB GLN 86 -2.684 20.828 13.402 1.00 76.04 C ATOM 660 CG GLN 86 -3.854 20.272 12.590 1.00 76.04 C ATOM 661 CD GLN 86 -4.412 21.409 11.750 1.00 76.04 C ATOM 662 OE1 GLN 86 -4.737 21.224 10.577 1.00 76.04 O ATOM 663 NE2 GLN 86 -4.542 22.613 12.372 1.00 76.04 N ATOM 664 C GLN 86 -1.561 18.653 13.526 1.00 76.04 C ATOM 665 O GLN 86 -2.215 17.614 13.449 1.00 76.04 O ATOM 666 N LEU 87 -0.381 18.808 12.902 1.00134.17 N ATOM 667 CA LEU 87 0.107 17.767 12.054 1.00134.17 C ATOM 668 CB LEU 87 1.433 18.148 11.368 1.00134.17 C ATOM 669 CG LEU 87 2.000 17.094 10.387 1.00134.17 C ATOM 670 CD1 LEU 87 2.549 15.850 11.105 1.00134.17 C ATOM 671 CD2 LEU 87 0.980 16.749 9.290 1.00134.17 C ATOM 672 C LEU 87 0.329 16.561 12.900 1.00134.17 C ATOM 673 O LEU 87 0.002 15.447 12.496 1.00134.17 O ATOM 674 N LYS 88 0.885 16.749 14.109 1.00162.27 N ATOM 675 CA LYS 88 1.198 15.613 14.919 1.00162.27 C ATOM 676 CB LYS 88 1.962 15.971 16.204 1.00162.27 C ATOM 677 CG LYS 88 2.291 14.734 17.041 1.00162.27 C ATOM 678 CD LYS 88 3.204 13.737 16.323 1.00162.27 C ATOM 679 CE LYS 88 4.653 14.205 16.198 1.00162.27 C ATOM 680 NZ LYS 88 5.385 13.912 17.449 1.00162.27 N ATOM 681 C LYS 88 -0.039 14.871 15.317 1.00162.27 C ATOM 682 O LYS 88 -0.086 13.646 15.233 1.00162.27 O ATOM 683 N LYS 89 -1.094 15.592 15.730 1.00 87.31 N ATOM 684 CA LYS 89 -2.267 14.937 16.229 1.00 87.31 C ATOM 685 CB LYS 89 -3.354 15.943 16.643 1.00 87.31 C ATOM 686 CG LYS 89 -4.536 15.320 17.390 1.00 87.31 C ATOM 687 CD LYS 89 -5.449 16.361 18.042 1.00 87.31 C ATOM 688 CE LYS 89 -6.632 15.760 18.803 1.00 87.31 C ATOM 689 NZ LYS 89 -6.215 15.406 20.177 1.00 87.31 N ATOM 690 C LYS 89 -2.842 14.070 15.165 1.00 87.31 C ATOM 691 O LYS 89 -3.201 12.920 15.415 1.00 87.31 O ATOM 692 N GLU 90 -2.927 14.603 13.936 1.00 85.29 N ATOM 693 CA GLU 90 -3.554 13.863 12.888 1.00 85.29 C ATOM 694 CB GLU 90 -3.750 14.690 11.601 1.00 85.29 C ATOM 695 CG GLU 90 -2.451 15.190 10.965 1.00 85.29 C ATOM 696 CD GLU 90 -2.809 16.108 9.800 1.00 85.29 C ATOM 697 OE1 GLU 90 -3.562 17.094 10.030 1.00 85.29 O ATOM 698 OE2 GLU 90 -2.336 15.839 8.665 1.00 85.29 O ATOM 699 C GLU 90 -2.765 12.638 12.558 1.00 85.29 C ATOM 700 O GLU 90 -3.336 11.559 12.410 1.00 85.29 O ATOM 701 N LEU 91 -1.429 12.761 12.463 1.00124.78 N ATOM 702 CA LEU 91 -0.669 11.621 12.043 1.00124.78 C ATOM 703 CB LEU 91 0.834 11.904 11.867 1.00124.78 C ATOM 704 CG LEU 91 1.617 10.677 11.356 1.00124.78 C ATOM 705 CD1 LEU 91 1.123 10.247 9.965 1.00124.78 C ATOM 706 CD2 LEU 91 3.135 10.916 11.396 1.00124.78 C ATOM 707 C LEU 91 -0.810 10.540 13.061 1.00124.78 C ATOM 708 O LEU 91 -1.012 9.378 12.716 1.00124.78 O ATOM 709 N ALA 92 -0.710 10.909 14.350 1.00 37.28 N ATOM 710 CA ALA 92 -0.752 9.962 15.425 1.00 37.28 C ATOM 711 CB ALA 92 -0.486 10.618 16.790 1.00 37.28 C ATOM 712 C ALA 92 -2.084 9.303 15.506 1.00 37.28 C ATOM 713 O ALA 92 -2.171 8.090 15.684 1.00 37.28 O ATOM 714 N ASP 93 -3.163 10.089 15.364 1.00 31.92 N ATOM 715 CA ASP 93 -4.473 9.543 15.534 1.00 31.92 C ATOM 716 CB ASP 93 -5.576 10.600 15.350 1.00 31.92 C ATOM 717 CG ASP 93 -5.479 11.596 16.498 1.00 31.92 C ATOM 718 OD1 ASP 93 -4.895 11.232 17.554 1.00 31.92 O ATOM 719 OD2 ASP 93 -5.988 12.737 16.331 1.00 31.92 O ATOM 720 C ASP 93 -4.693 8.498 14.499 1.00 31.92 C ATOM 721 O ASP 93 -5.173 7.407 14.797 1.00 31.92 O ATOM 722 N ALA 94 -4.323 8.805 13.246 1.00 29.57 N ATOM 723 CA ALA 94 -4.573 7.880 12.186 1.00 29.57 C ATOM 724 CB ALA 94 -4.150 8.427 10.813 1.00 29.57 C ATOM 725 C ALA 94 -3.806 6.620 12.421 1.00 29.57 C ATOM 726 O ALA 94 -4.345 5.524 12.283 1.00 29.57 O ATOM 727 N ILE 95 -2.524 6.743 12.804 1.00 86.91 N ATOM 728 CA ILE 95 -1.681 5.591 12.954 1.00 86.91 C ATOM 729 CB ILE 95 -0.246 5.953 13.206 1.00 86.91 C ATOM 730 CG2 ILE 95 0.271 6.710 11.973 1.00 86.91 C ATOM 731 CG1 ILE 95 -0.092 6.730 14.521 1.00 86.91 C ATOM 732 CD1 ILE 95 1.359 6.863 14.979 1.00 86.91 C ATOM 733 C ILE 95 -2.135 4.725 14.084 1.00 86.91 C ATOM 734 O ILE 95 -2.240 3.509 13.935 1.00 86.91 O ATOM 735 N THR 96 -2.438 5.331 15.243 1.00 99.27 N ATOM 736 CA THR 96 -2.769 4.539 16.389 1.00 99.27 C ATOM 737 CB THR 96 -2.968 5.371 17.627 1.00 99.27 C ATOM 738 OG1 THR 96 -3.186 4.533 18.752 1.00 99.27 O ATOM 739 CG2 THR 96 -4.158 6.324 17.420 1.00 99.27 C ATOM 740 C THR 96 -4.015 3.763 16.123 1.00 99.27 C ATOM 741 O THR 96 -4.094 2.573 16.424 1.00 99.27 O ATOM 742 N GLU 97 -5.018 4.421 15.524 1.00 92.24 N ATOM 743 CA GLU 97 -6.287 3.806 15.313 1.00 92.24 C ATOM 744 CB GLU 97 -7.303 4.815 14.749 1.00 92.24 C ATOM 745 CG GLU 97 -8.669 4.768 15.439 1.00 92.24 C ATOM 746 CD GLU 97 -9.335 3.433 15.182 1.00 92.24 C ATOM 747 OE1 GLU 97 -8.932 2.754 14.201 1.00 92.24 O ATOM 748 OE2 GLU 97 -10.259 3.078 15.961 1.00 92.24 O ATOM 749 C GLU 97 -6.099 2.685 14.331 1.00 92.24 C ATOM 750 O GLU 97 -6.679 1.612 14.476 1.00 92.24 O ATOM 751 N ARG 98 -5.253 2.916 13.310 1.00123.27 N ATOM 752 CA ARG 98 -5.001 1.994 12.235 1.00123.27 C ATOM 753 CB ARG 98 -3.983 2.588 11.248 1.00123.27 C ATOM 754 CG ARG 98 -3.618 1.716 10.046 1.00123.27 C ATOM 755 CD ARG 98 -2.377 2.248 9.326 1.00123.27 C ATOM 756 NE ARG 98 -2.117 1.398 8.132 1.00123.27 N ATOM 757 CZ ARG 98 -2.680 1.729 6.934 1.00123.27 C ATOM 758 NH1 ARG 98 -3.511 2.809 6.847 1.00123.27 N ATOM 759 NH2 ARG 98 -2.400 0.991 5.822 1.00123.27 N ATOM 760 C ARG 98 -4.416 0.716 12.752 1.00123.27 C ATOM 761 O ARG 98 -4.857 -0.370 12.383 1.00123.27 O ATOM 762 N PHE 99 -3.405 0.813 13.632 1.00 86.87 N ATOM 763 CA PHE 99 -2.725 -0.349 14.125 1.00 86.87 C ATOM 764 CB PHE 99 -1.554 0.022 15.051 1.00 86.87 C ATOM 765 CG PHE 99 -1.036 -1.223 15.684 1.00 86.87 C ATOM 766 CD1 PHE 99 -0.246 -2.101 14.978 1.00 86.87 C ATOM 767 CD2 PHE 99 -1.333 -1.500 16.999 1.00 86.87 C ATOM 768 CE1 PHE 99 0.231 -3.245 15.573 1.00 86.87 C ATOM 769 CE2 PHE 99 -0.858 -2.643 17.599 1.00 86.87 C ATOM 770 CZ PHE 99 -0.075 -3.518 16.885 1.00 86.87 C ATOM 771 C PHE 99 -3.666 -1.211 14.898 1.00 86.87 C ATOM 772 O PHE 99 -3.738 -2.418 14.672 1.00 86.87 O ATOM 773 N LEU 100 -4.433 -0.602 15.818 1.00113.98 N ATOM 774 CA LEU 100 -5.295 -1.379 16.656 1.00113.98 C ATOM 775 CB LEU 100 -6.010 -0.533 17.732 1.00113.98 C ATOM 776 CG LEU 100 -6.883 -1.332 18.728 1.00113.98 C ATOM 777 CD1 LEU 100 -8.172 -1.874 18.087 1.00113.98 C ATOM 778 CD2 LEU 100 -6.063 -2.428 19.427 1.00113.98 C ATOM 779 C LEU 100 -6.328 -2.042 15.806 1.00113.98 C ATOM 780 O LEU 100 -6.626 -3.221 15.992 1.00113.98 O ATOM 781 N GLU 101 -6.894 -1.307 14.832 1.00 70.45 N ATOM 782 CA GLU 101 -7.944 -1.869 14.035 1.00 70.45 C ATOM 783 CB GLU 101 -8.516 -0.896 12.992 1.00 70.45 C ATOM 784 CG GLU 101 -9.470 0.143 13.572 1.00 70.45 C ATOM 785 CD GLU 101 -10.743 -0.583 13.986 1.00 70.45 C ATOM 786 OE1 GLU 101 -10.787 -1.080 15.141 1.00 70.45 O ATOM 787 OE2 GLU 101 -11.684 -0.653 13.151 1.00 70.45 O ATOM 788 C GLU 101 -7.433 -3.050 13.281 1.00 70.45 C ATOM 789 O GLU 101 -8.107 -4.076 13.204 1.00 70.45 O ATOM 790 N GLU 102 -6.224 -2.948 12.705 1.00 58.23 N ATOM 791 CA GLU 102 -5.748 -4.047 11.923 1.00 58.23 C ATOM 792 CB GLU 102 -4.384 -3.789 11.259 1.00 58.23 C ATOM 793 CG GLU 102 -4.435 -2.739 10.147 1.00 58.23 C ATOM 794 CD GLU 102 -3.035 -2.598 9.570 1.00 58.23 C ATOM 795 OE1 GLU 102 -2.121 -3.319 10.054 1.00 58.23 O ATOM 796 OE2 GLU 102 -2.862 -1.772 8.634 1.00 58.23 O ATOM 797 C GLU 102 -5.600 -5.228 12.817 1.00 58.23 C ATOM 798 O GLU 102 -6.044 -6.321 12.485 1.00 58.23 O ATOM 799 N ALA 103 -5.015 -5.031 14.010 1.00 31.70 N ATOM 800 CA ALA 103 -4.763 -6.155 14.859 1.00 31.70 C ATOM 801 CB ALA 103 -4.075 -5.764 16.177 1.00 31.70 C ATOM 802 C ALA 103 -6.054 -6.819 15.213 1.00 31.70 C ATOM 803 O ALA 103 -6.163 -8.042 15.137 1.00 31.70 O ATOM 804 N LYS 104 -7.081 -6.033 15.584 1.00109.63 N ATOM 805 CA LYS 104 -8.323 -6.621 15.994 1.00109.63 C ATOM 806 CB LYS 104 -9.346 -5.599 16.526 1.00109.63 C ATOM 807 CG LYS 104 -9.910 -4.646 15.469 1.00109.63 C ATOM 808 CD LYS 104 -11.105 -3.838 15.982 1.00109.63 C ATOM 809 CE LYS 104 -12.194 -4.702 16.621 1.00109.63 C ATOM 810 NZ LYS 104 -13.174 -3.845 17.327 1.00109.63 N ATOM 811 C LYS 104 -8.927 -7.341 14.832 1.00109.63 C ATOM 812 O LYS 104 -9.526 -8.401 15.003 1.00109.63 O ATOM 813 N SER 105 -8.781 -6.784 13.611 1.00 69.43 N ATOM 814 CA SER 105 -9.377 -7.395 12.455 1.00 69.43 C ATOM 815 CB SER 105 -9.176 -6.603 11.149 1.00 69.43 C ATOM 816 OG SER 105 -7.840 -6.731 10.683 1.00 69.43 O ATOM 817 C SER 105 -8.765 -8.744 12.269 1.00 69.43 C ATOM 818 O SER 105 -9.448 -9.692 11.887 1.00 69.43 O ATOM 819 N ILE 106 -7.459 -8.874 12.562 1.00 93.36 N ATOM 820 CA ILE 106 -6.823 -10.153 12.448 1.00 93.36 C ATOM 821 CB ILE 106 -5.347 -10.175 12.755 1.00 93.36 C ATOM 822 CG2 ILE 106 -4.994 -11.599 13.213 1.00 93.36 C ATOM 823 CG1 ILE 106 -4.507 -9.713 11.545 1.00 93.36 C ATOM 824 CD1 ILE 106 -4.687 -8.261 11.124 1.00 93.36 C ATOM 825 C ILE 106 -7.529 -11.088 13.371 1.00 93.36 C ATOM 826 O ILE 106 -7.649 -12.278 13.085 1.00 93.36 O ATOM 827 N GLY 107 -8.043 -10.575 14.502 1.00 28.69 N ATOM 828 CA GLY 107 -8.697 -11.446 15.428 1.00 28.69 C ATOM 829 C GLY 107 -7.967 -11.343 16.722 1.00 28.69 C ATOM 830 O GLY 107 -8.384 -11.920 17.725 1.00 28.69 O ATOM 831 N LEU 108 -6.845 -10.602 16.728 1.00136.75 N ATOM 832 CA LEU 108 -6.149 -10.421 17.965 1.00136.75 C ATOM 833 CB LEU 108 -4.896 -9.533 17.855 1.00136.75 C ATOM 834 CG LEU 108 -3.764 -10.111 16.986 1.00136.75 C ATOM 835 CD1 LEU 108 -2.562 -9.154 16.943 1.00136.75 C ATOM 836 CD2 LEU 108 -3.373 -11.525 17.446 1.00136.75 C ATOM 837 C LEU 108 -7.103 -9.698 18.856 1.00136.75 C ATOM 838 O LEU 108 -7.716 -8.707 18.461 1.00136.75 O ATOM 839 N ASP 109 -7.263 -10.206 20.090 1.00 24.73 N ATOM 840 CA ASP 109 -8.159 -9.577 21.010 1.00 24.73 C ATOM 841 CB ASP 109 -8.630 -10.501 22.146 1.00 24.73 C ATOM 842 CG ASP 109 -9.572 -11.532 21.547 1.00 24.73 C ATOM 843 OD1 ASP 109 -9.935 -11.372 20.351 1.00 24.73 O ATOM 844 OD2 ASP 109 -9.941 -12.491 22.275 1.00 24.73 O ATOM 845 C ASP 109 -7.443 -8.428 21.627 1.00 24.73 C ATOM 846 O ASP 109 -6.219 -8.327 21.568 1.00 24.73 O ATOM 847 N ASP 110 -8.221 -7.517 22.237 1.00 81.12 N ATOM 848 CA ASP 110 -7.667 -6.371 22.885 1.00 81.12 C ATOM 849 CB ASP 110 -8.740 -5.433 23.462 1.00 81.12 C ATOM 850 CG ASP 110 -9.491 -6.195 24.544 1.00 81.12 C ATOM 851 OD1 ASP 110 -9.869 -7.368 24.282 1.00 81.12 O ATOM 852 OD2 ASP 110 -9.682 -5.622 25.649 1.00 81.12 O ATOM 853 C ASP 110 -6.854 -6.868 24.032 1.00 81.12 C ATOM 854 O ASP 110 -5.824 -6.292 24.375 1.00 81.12 O ATOM 855 N GLN 111 -7.299 -7.983 24.640 1.00 74.36 N ATOM 856 CA GLN 111 -6.638 -8.496 25.800 1.00 74.36 C ATOM 857 CB GLN 111 -7.244 -9.824 26.285 1.00 74.36 C ATOM 858 CG GLN 111 -6.554 -10.393 27.526 1.00 74.36 C ATOM 859 CD GLN 111 -7.225 -11.713 27.880 1.00 74.36 C ATOM 860 OE1 GLN 111 -7.943 -11.813 28.874 1.00 74.36 O ATOM 861 NE2 GLN 111 -6.981 -12.757 27.044 1.00 74.36 N ATOM 862 C GLN 111 -5.217 -8.784 25.455 1.00 74.36 C ATOM 863 O GLN 111 -4.312 -8.405 26.196 1.00 74.36 O ATOM 864 N THR 112 -4.974 -9.441 24.305 1.00 75.97 N ATOM 865 CA THR 112 -3.623 -9.767 23.972 1.00 75.97 C ATOM 866 CB THR 112 -3.498 -10.888 22.978 1.00 75.97 C ATOM 867 OG1 THR 112 -2.147 -11.319 22.896 1.00 75.97 O ATOM 868 CG2 THR 112 -3.986 -10.397 21.605 1.00 75.97 C ATOM 869 C THR 112 -2.978 -8.531 23.366 1.00 75.97 C ATOM 870 O THR 112 -1.750 -8.583 23.085 1.00 75.97 O ATOM 871 OXT THR 112 -3.702 -7.519 23.176 1.00 75.97 O TER 872 THR 109 END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 222 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 13.91 94.4 54 71.1 76 ARMSMC SECONDARY STRUCTURE . . 6.18 100.0 45 70.3 64 ARMSMC SURFACE . . . . . . . . 14.17 94.2 52 72.2 72 ARMSMC BURIED . . . . . . . . 2.39 100.0 2 50.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.72 37.5 24 70.6 34 ARMSSC1 RELIABLE SIDE CHAINS . 91.72 37.5 24 70.6 34 ARMSSC1 SECONDARY STRUCTURE . . 87.11 40.0 20 71.4 28 ARMSSC1 SURFACE . . . . . . . . 91.72 37.5 24 70.6 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.06 52.4 21 70.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 67.61 64.7 17 73.9 23 ARMSSC2 SECONDARY STRUCTURE . . 78.14 58.8 17 70.8 24 ARMSSC2 SURFACE . . . . . . . . 79.06 52.4 21 70.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.90 20.0 10 71.4 14 ARMSSC3 RELIABLE SIDE CHAINS . 86.63 25.0 8 66.7 12 ARMSSC3 SECONDARY STRUCTURE . . 94.90 20.0 10 76.9 13 ARMSSC3 SURFACE . . . . . . . . 94.90 20.0 10 71.4 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 114.43 25.0 4 57.1 7 ARMSSC4 RELIABLE SIDE CHAINS . 114.43 25.0 4 57.1 7 ARMSSC4 SECONDARY STRUCTURE . . 114.43 25.0 4 66.7 6 ARMSSC4 SURFACE . . . . . . . . 114.43 25.0 4 57.1 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.06 (Number of atoms: 28) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.06 28 71.8 39 CRMSCA CRN = ALL/NP . . . . . 0.0378 CRMSCA SECONDARY STRUCTURE . . 1.09 23 71.9 32 CRMSCA SURFACE . . . . . . . . 1.07 27 73.0 37 CRMSCA BURIED . . . . . . . . 0.75 1 50.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.08 139 71.6 194 CRMSMC SECONDARY STRUCTURE . . 1.10 115 71.9 160 CRMSMC SURFACE . . . . . . . . 1.09 134 72.8 184 CRMSMC BURIED . . . . . . . . 0.82 5 50.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 2.70 110 70.1 157 CRMSSC RELIABLE SIDE CHAINS . 2.49 98 70.5 139 CRMSSC SECONDARY STRUCTURE . . 2.70 94 72.3 130 CRMSSC SURFACE . . . . . . . . 2.71 109 70.3 155 CRMSSC BURIED . . . . . . . . 1.29 1 50.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.03 222 70.9 313 CRMSALL SECONDARY STRUCTURE . . 2.05 186 72.1 258 CRMSALL SURFACE . . . . . . . . 2.05 217 71.6 303 CRMSALL BURIED . . . . . . . . 0.82 5 50.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 79.761 0.972 0.972 28 71.8 39 ERRCA SECONDARY STRUCTURE . . 83.486 0.975 0.975 23 71.9 32 ERRCA SURFACE . . . . . . . . 81.569 0.973 0.973 27 73.0 37 ERRCA BURIED . . . . . . . . 30.952 0.954 0.955 1 50.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 80.124 0.972 0.972 139 71.6 194 ERRMC SECONDARY STRUCTURE . . 83.495 0.975 0.976 115 71.9 160 ERRMC SURFACE . . . . . . . . 81.959 0.972 0.973 134 72.8 184 ERRMC BURIED . . . . . . . . 30.938 0.953 0.954 5 50.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 86.396 0.940 0.943 110 70.1 157 ERRSC RELIABLE SIDE CHAINS . 83.957 0.942 0.945 98 70.5 139 ERRSC SECONDARY STRUCTURE . . 89.233 0.948 0.950 94 72.3 130 ERRSC SURFACE . . . . . . . . 86.910 0.940 0.943 109 70.3 155 ERRSC BURIED . . . . . . . . 30.406 0.922 0.925 1 50.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 83.068 0.957 0.958 222 70.9 313 ERRALL SECONDARY STRUCTURE . . 86.423 0.962 0.963 186 72.1 258 ERRALL SURFACE . . . . . . . . 84.270 0.957 0.959 217 71.6 303 ERRALL BURIED . . . . . . . . 30.938 0.953 0.954 5 50.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 19 27 28 28 28 28 39 DISTCA CA (P) 48.72 69.23 71.79 71.79 71.79 39 DISTCA CA (RMS) 0.69 0.95 1.06 1.06 1.06 DISTCA ALL (N) 92 164 193 216 222 222 313 DISTALL ALL (P) 29.39 52.40 61.66 69.01 70.93 313 DISTALL ALL (RMS) 0.67 1.10 1.36 1.83 2.03 DISTALL END of the results output