####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 39 ( 272), selected 39 , name T0586TS257_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 39 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS257_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 89 - 123 4.98 7.20 LCS_AVERAGE: 85.80 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 96 - 122 1.93 10.49 LONGEST_CONTINUOUS_SEGMENT: 27 97 - 123 1.93 10.55 LCS_AVERAGE: 60.55 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 107 - 123 0.95 9.35 LCS_AVERAGE: 33.53 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 39 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 6 15 20 3 4 8 11 13 15 15 16 18 20 22 23 23 25 26 29 30 32 33 34 LCS_GDT Q 86 Q 86 6 15 20 5 5 9 11 13 15 15 16 18 20 22 23 23 25 26 29 30 32 35 37 LCS_GDT L 87 L 87 6 15 20 5 5 6 10 13 15 15 15 18 20 22 23 23 25 26 29 30 32 35 37 LCS_GDT K 88 K 88 10 15 20 5 5 8 10 13 15 15 15 18 20 22 22 23 25 26 29 30 32 33 37 LCS_GDT K 89 K 89 10 15 35 5 9 9 11 13 15 15 16 18 20 22 23 23 25 26 29 30 32 35 37 LCS_GDT E 90 E 90 10 15 35 8 9 9 11 13 15 15 16 18 20 22 28 31 32 34 34 34 34 35 37 LCS_GDT L 91 L 91 10 15 35 8 9 9 11 13 15 15 16 18 20 22 28 31 32 34 34 34 34 35 37 LCS_GDT A 92 A 92 10 15 35 8 9 9 11 13 15 15 16 18 20 22 28 31 32 34 34 34 34 35 37 LCS_GDT D 93 D 93 10 15 35 8 9 9 11 13 15 15 16 18 20 28 30 31 32 34 34 34 34 35 37 LCS_GDT A 94 A 94 10 15 35 8 9 9 11 13 15 20 25 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT I 95 I 95 10 15 35 8 9 9 11 13 15 16 24 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT T 96 T 96 10 27 35 8 9 9 11 19 23 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT E 97 E 97 10 27 35 8 9 14 20 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT R 98 R 98 6 27 35 4 4 6 15 19 23 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT F 99 F 99 10 27 35 6 10 14 20 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT L 100 L 100 10 27 35 6 10 14 20 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT E 101 E 101 10 27 35 6 9 14 18 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT E 102 E 102 10 27 35 6 10 14 20 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT A 103 A 103 14 27 35 6 10 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT K 104 K 104 14 27 35 6 10 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT S 105 S 105 14 27 35 5 10 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT I 106 I 106 15 27 35 5 9 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT G 107 G 107 17 27 35 5 10 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT L 108 L 108 17 27 35 6 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT D 109 D 109 17 27 35 6 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT D 110 D 110 17 27 35 6 11 17 21 23 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT Q 111 Q 111 17 27 35 6 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT T 112 T 112 17 27 35 7 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT A 113 A 113 17 27 35 9 11 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT I 114 I 114 17 27 35 9 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT E 115 E 115 17 27 35 9 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT L 116 L 116 17 27 35 9 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT L 117 L 117 17 27 35 9 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT I 118 I 118 17 27 35 9 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT K 119 K 119 17 27 35 9 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT R 120 R 120 17 27 35 9 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT S 121 S 121 17 27 35 9 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT R 122 R 122 17 27 35 5 11 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_GDT N 123 N 123 17 27 35 5 7 17 21 22 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 LCS_AVERAGE LCS_A: 59.96 ( 33.53 60.55 85.80 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 12 17 21 24 26 27 28 28 29 30 30 31 32 34 34 34 34 35 37 GDT PERCENT_AT 23.08 30.77 43.59 53.85 61.54 66.67 69.23 71.79 71.79 74.36 76.92 76.92 79.49 82.05 87.18 87.18 87.18 87.18 89.74 94.87 GDT RMS_LOCAL 0.29 0.63 0.95 1.25 1.62 1.77 1.88 2.02 2.02 2.46 2.73 2.73 3.06 3.60 4.44 4.44 4.44 4.44 4.98 5.85 GDT RMS_ALL_AT 10.14 9.54 9.35 9.51 10.74 10.49 10.36 10.42 10.42 9.79 9.43 9.43 9.10 8.61 7.59 7.59 7.59 7.59 7.20 6.60 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 29.906 3 0.031 0.032 31.190 0.000 0.000 LGA Q 86 Q 86 26.250 4 0.111 0.115 27.865 0.000 0.000 LGA L 87 L 87 24.260 3 0.056 0.056 25.835 0.000 0.000 LGA K 88 K 88 22.998 4 0.019 0.018 24.759 0.000 0.000 LGA K 89 K 89 20.599 4 0.041 0.043 21.978 0.000 0.000 LGA E 90 E 90 17.069 4 0.060 0.065 18.783 0.000 0.000 LGA L 91 L 91 16.761 3 0.020 0.021 18.961 0.000 0.000 LGA A 92 A 92 13.703 0 0.089 0.094 15.214 0.119 0.095 LGA D 93 D 93 9.728 3 0.010 0.018 11.575 7.262 3.631 LGA A 94 A 94 8.564 0 0.111 0.114 10.804 4.048 3.238 LGA I 95 I 95 8.392 3 0.149 0.153 9.815 10.476 5.298 LGA T 96 T 96 3.617 2 0.324 0.321 5.394 47.857 31.088 LGA E 97 E 97 2.342 4 0.063 0.065 3.084 57.262 31.005 LGA R 98 R 98 4.113 6 0.073 0.073 5.109 45.119 18.788 LGA F 99 F 99 2.185 6 0.312 0.319 3.047 64.881 28.139 LGA L 100 L 100 1.950 3 0.010 0.018 2.159 66.786 41.488 LGA E 101 E 101 2.716 4 0.024 0.024 3.653 62.976 32.804 LGA E 102 E 102 1.927 4 0.032 0.035 2.531 72.976 38.783 LGA A 103 A 103 1.001 0 0.049 0.050 1.379 83.690 85.048 LGA K 104 K 104 1.002 4 0.022 0.022 1.172 85.952 47.249 LGA S 105 S 105 0.957 1 0.040 0.048 1.080 85.952 72.381 LGA I 106 I 106 1.415 3 0.127 0.129 1.931 85.952 52.083 LGA G 107 G 107 0.468 0 0.033 0.033 0.745 95.238 95.238 LGA L 108 L 108 0.683 3 0.139 0.184 1.945 86.190 53.274 LGA D 109 D 109 1.910 3 0.007 0.012 2.184 77.143 46.667 LGA D 110 D 110 2.776 3 0.027 0.024 3.523 60.952 35.893 LGA Q 111 Q 111 1.604 4 0.013 0.016 2.031 77.381 42.487 LGA T 112 T 112 0.329 2 0.066 0.074 1.179 90.595 66.054 LGA A 113 A 113 2.018 0 0.022 0.022 2.584 70.952 68.190 LGA I 114 I 114 1.488 3 0.043 0.045 1.612 79.286 48.750 LGA E 115 E 115 0.639 4 0.022 0.025 1.056 88.214 50.317 LGA L 116 L 116 1.799 3 0.084 0.090 2.236 75.000 45.595 LGA L 117 L 117 1.658 3 0.060 0.068 1.741 72.857 45.536 LGA I 118 I 118 1.411 3 0.009 0.013 1.570 79.286 49.821 LGA K 119 K 119 1.434 4 0.133 0.138 1.945 77.143 43.333 LGA R 120 R 120 2.138 6 0.128 0.136 2.936 64.881 29.481 LGA S 121 S 121 1.549 1 0.017 0.019 2.082 70.833 60.794 LGA R 122 R 122 2.136 6 0.185 0.184 3.662 59.524 27.532 LGA N 123 N 123 3.311 3 0.281 0.298 7.136 34.643 21.250 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 39 156 156 100.00 313 194 61.98 39 SUMMARY(RMSD_GDC): 6.455 6.269 6.437 52.344 33.880 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 39 39 4.0 28 2.02 60.897 63.271 1.322 LGA_LOCAL RMSD: 2.018 Number of atoms: 28 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.424 Number of assigned atoms: 39 Std_ASGN_ATOMS RMSD: 6.455 Standard rmsd on all 39 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.175416 * X + 0.285798 * Y + -0.942098 * Z + -16.765778 Y_new = 0.113034 * X + 0.944761 * Y + 0.307652 * Z + 10.102337 Z_new = 0.977984 * X + -0.160457 * Y + 0.133422 * Z + 21.229916 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.572413 -1.360570 -0.877135 [DEG: 32.7968 -77.9549 -50.2561 ] ZXZ: -1.886439 1.436976 1.733416 [DEG: -108.0850 82.3326 99.3174 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS257_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS257_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 39 39 4.0 28 2.02 63.271 6.46 REMARK ---------------------------------------------------------- MOLECULE T0586TS257_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT N/A ATOM 579 N ASP 85 -12.216 -0.659 31.829 1.00 0.00 N ATOM 580 CA ASP 85 -12.625 -1.931 31.248 1.00 0.00 C ATOM 581 C ASP 85 -12.798 -1.819 29.739 1.00 0.00 C ATOM 582 O ASP 85 -12.355 -2.686 28.986 1.00 0.00 O ATOM 583 CB ASP 85 -13.924 -2.422 31.891 1.00 0.00 C ATOM 584 CEN ASP 85 -14.248 -3.058 32.619 1.00 0.00 C ATOM 585 H ASP 85 -12.818 -0.211 32.504 1.00 0.00 H ATOM 586 N GLN 86 -13.446 -0.745 29.301 1.00 0.00 N ATOM 587 CA GLN 86 -13.705 -0.530 27.883 1.00 0.00 C ATOM 588 C GLN 86 -12.501 0.099 27.192 1.00 0.00 C ATOM 589 O GLN 86 -12.436 0.152 25.964 1.00 0.00 O ATOM 590 CB GLN 86 -14.934 0.362 27.691 1.00 0.00 C ATOM 591 CEN GLN 86 -16.638 0.369 27.315 1.00 0.00 C ATOM 592 H GLN 86 -13.767 -0.058 29.969 1.00 0.00 H ATOM 593 N LEU 87 -11.549 0.572 27.989 1.00 0.00 N ATOM 594 CA LEU 87 -10.347 1.202 27.455 1.00 0.00 C ATOM 595 C LEU 87 -9.720 0.350 26.359 1.00 0.00 C ATOM 596 O LEU 87 -9.171 0.874 25.389 1.00 0.00 O ATOM 597 CB LEU 87 -9.336 1.453 28.581 1.00 0.00 C ATOM 598 CEN LEU 87 -8.911 2.723 29.341 1.00 0.00 C ATOM 599 H LEU 87 -11.661 0.496 28.989 1.00 0.00 H ATOM 600 N LYS 88 -9.803 -0.966 26.519 1.00 0.00 N ATOM 601 CA LYS 88 -9.299 -1.894 25.513 1.00 0.00 C ATOM 602 C LYS 88 -10.120 -1.818 24.233 1.00 0.00 C ATOM 603 O LYS 88 -9.569 -1.782 23.133 1.00 0.00 O ATOM 604 CB LYS 88 -9.301 -3.324 26.055 1.00 0.00 C ATOM 605 CEN LYS 88 -8.219 -4.966 26.835 1.00 0.00 C ATOM 606 H LYS 88 -10.227 -1.334 27.359 1.00 0.00 H ATOM 607 N LYS 89 -11.439 -1.793 24.383 1.00 0.00 N ATOM 608 CA LYS 89 -12.339 -1.719 23.238 1.00 0.00 C ATOM 609 C LYS 89 -12.338 -0.323 22.626 1.00 0.00 C ATOM 610 O LYS 89 -12.434 -0.168 21.409 1.00 0.00 O ATOM 611 CB LYS 89 -13.759 -2.112 23.645 1.00 0.00 C ATOM 612 CEN LYS 89 -15.308 -3.554 23.646 1.00 0.00 C ATOM 613 H LYS 89 -11.830 -1.827 25.313 1.00 0.00 H ATOM 614 N GLU 90 -12.229 0.691 23.478 1.00 0.00 N ATOM 615 CA GLU 90 -12.136 2.072 23.019 1.00 0.00 C ATOM 616 C GLU 90 -10.708 2.591 23.125 1.00 0.00 C ATOM 617 O GLU 90 -10.173 3.161 22.174 1.00 0.00 O ATOM 618 CB GLU 90 -13.083 2.967 23.819 1.00 0.00 C ATOM 619 CEN GLU 90 -14.567 3.793 23.963 1.00 0.00 C ATOM 620 H GLU 90 -12.210 0.500 24.470 1.00 0.00 H ATOM 621 N LEU 91 -10.096 2.393 24.288 1.00 0.00 N ATOM 622 CA LEU 91 -8.788 2.972 24.573 1.00 0.00 C ATOM 623 C LEU 91 -7.681 2.212 23.855 1.00 0.00 C ATOM 624 O LEU 91 -6.752 2.813 23.316 1.00 0.00 O ATOM 625 CB LEU 91 -8.534 2.984 26.086 1.00 0.00 C ATOM 626 CEN LEU 91 -8.570 4.103 27.143 1.00 0.00 C ATOM 627 H LEU 91 -10.548 1.827 24.990 1.00 0.00 H ATOM 628 N ALA 92 -7.785 0.887 23.852 1.00 0.00 N ATOM 629 CA ALA 92 -6.804 0.044 23.179 1.00 0.00 C ATOM 630 C ALA 92 -6.812 0.282 21.675 1.00 0.00 C ATOM 631 O ALA 92 -5.804 0.078 21.000 1.00 0.00 O ATOM 632 CB ALA 92 -7.067 -1.424 23.489 1.00 0.00 C ATOM 633 CEN ALA 92 -7.067 -1.423 23.488 1.00 0.00 C ATOM 634 H ALA 92 -8.563 0.454 24.328 1.00 0.00 H ATOM 635 N ASP 93 -7.956 0.713 21.155 1.00 0.00 N ATOM 636 CA ASP 93 -8.092 0.999 19.732 1.00 0.00 C ATOM 637 C ASP 93 -7.466 2.343 19.379 1.00 0.00 C ATOM 638 O ASP 93 -6.820 2.483 18.340 1.00 0.00 O ATOM 639 CB ASP 93 -9.565 0.981 19.319 1.00 0.00 C ATOM 640 CEN ASP 93 -10.253 0.360 18.895 1.00 0.00 C ATOM 641 H ASP 93 -8.753 0.847 21.762 1.00 0.00 H ATOM 642 N ALA 94 -7.662 3.328 20.248 1.00 0.00 N ATOM 643 CA ALA 94 -7.084 4.652 20.049 1.00 0.00 C ATOM 644 C ALA 94 -5.578 4.637 20.280 1.00 0.00 C ATOM 645 O ALA 94 -4.863 5.535 19.839 1.00 0.00 O ATOM 646 CB ALA 94 -7.755 5.665 20.964 1.00 0.00 C ATOM 647 CEN ALA 94 -7.754 5.665 20.964 1.00 0.00 C ATOM 648 H ALA 94 -8.224 3.156 21.069 1.00 0.00 H ATOM 649 N ILE 95 -5.103 3.610 20.977 1.00 0.00 N ATOM 650 CA ILE 95 -3.687 3.500 21.310 1.00 0.00 C ATOM 651 C ILE 95 -2.949 2.634 20.297 1.00 0.00 C ATOM 652 O ILE 95 -1.718 2.621 20.259 1.00 0.00 O ATOM 653 CB ILE 95 -3.481 2.915 22.719 1.00 0.00 C ATOM 654 CEN ILE 95 -3.421 3.148 23.782 1.00 0.00 C ATOM 655 H ILE 95 -5.737 2.886 21.284 1.00 0.00 H ATOM 656 N THR 96 -3.707 1.913 19.478 1.00 0.00 N ATOM 657 CA THR 96 -3.126 1.055 18.453 1.00 0.00 C ATOM 658 C THR 96 -3.694 1.379 17.077 1.00 0.00 C ATOM 659 O THR 96 -3.758 0.515 16.202 1.00 0.00 O ATOM 660 CB THR 96 -3.367 -0.434 18.759 1.00 0.00 C ATOM 661 CEN THR 96 -3.311 -0.904 19.102 1.00 0.00 C ATOM 662 H THR 96 -4.711 1.960 19.569 1.00 0.00 H ATOM 663 N GLU 97 -4.106 2.628 16.892 1.00 0.00 N ATOM 664 CA GLU 97 -4.680 3.066 15.625 1.00 0.00 C ATOM 665 C GLU 97 -3.753 2.742 14.460 1.00 0.00 C ATOM 666 O GLU 97 -4.209 2.391 13.372 1.00 0.00 O ATOM 667 CB GLU 97 -4.974 4.567 15.661 1.00 0.00 C ATOM 668 CEN GLU 97 -6.076 5.851 15.864 1.00 0.00 C ATOM 669 H GLU 97 -4.019 3.292 17.648 1.00 0.00 H ATOM 670 N ARG 98 -2.451 2.863 14.694 1.00 0.00 N ATOM 671 CA ARG 98 -1.457 2.575 13.667 1.00 0.00 C ATOM 672 C ARG 98 -1.360 1.078 13.399 1.00 0.00 C ATOM 673 O ARG 98 -1.408 0.640 12.250 1.00 0.00 O ATOM 674 CB ARG 98 -0.098 3.171 14.000 1.00 0.00 C ATOM 675 CEN ARG 98 1.821 4.741 14.051 1.00 0.00 C ATOM 676 H ARG 98 -2.141 3.161 15.608 1.00 0.00 H ATOM 677 N PHE 99 -1.222 0.299 14.466 1.00 0.00 N ATOM 678 CA PHE 99 -1.166 -1.153 14.351 1.00 0.00 C ATOM 679 C PHE 99 -2.454 -1.796 14.851 1.00 0.00 C ATOM 680 O PHE 99 -2.516 -3.009 15.050 1.00 0.00 O ATOM 681 CB PHE 99 0.033 -1.704 15.125 1.00 0.00 C ATOM 682 CEN PHE 99 1.519 -2.186 14.832 1.00 0.00 C ATOM 683 H PHE 99 -1.156 0.723 15.380 1.00 0.00 H ATOM 684 N LEU 100 -3.479 -0.976 15.051 1.00 0.00 N ATOM 685 CA LEU 100 -4.793 -1.473 15.445 1.00 0.00 C ATOM 686 C LEU 100 -5.477 -2.193 14.290 1.00 0.00 C ATOM 687 O LEU 100 -6.185 -3.179 14.493 1.00 0.00 O ATOM 688 CB LEU 100 -5.667 -0.319 15.948 1.00 0.00 C ATOM 689 CEN LEU 100 -6.102 0.126 17.357 1.00 0.00 C ATOM 690 H LEU 100 -3.346 0.018 14.929 1.00 0.00 H ATOM 691 N GLU 101 -5.261 -1.693 13.078 1.00 0.00 N ATOM 692 CA GLU 101 -5.845 -2.298 11.885 1.00 0.00 C ATOM 693 C GLU 101 -5.641 -3.807 11.878 1.00 0.00 C ATOM 694 O GLU 101 -6.516 -4.559 11.447 1.00 0.00 O ATOM 695 CB GLU 101 -5.242 -1.679 10.622 1.00 0.00 C ATOM 696 CEN GLU 101 -5.340 -0.578 9.326 1.00 0.00 C ATOM 697 H GLU 101 -4.680 -0.874 12.979 1.00 0.00 H ATOM 698 N GLU 102 -4.482 -4.246 12.357 1.00 0.00 N ATOM 699 CA GLU 102 -4.180 -5.669 12.448 1.00 0.00 C ATOM 700 C GLU 102 -4.692 -6.258 13.755 1.00 0.00 C ATOM 701 O GLU 102 -5.077 -7.427 13.813 1.00 0.00 O ATOM 702 CB GLU 102 -2.674 -5.906 12.319 1.00 0.00 C ATOM 703 CEN GLU 102 -1.322 -6.337 11.376 1.00 0.00 C ATOM 704 H GLU 102 -3.792 -3.575 12.666 1.00 0.00 H ATOM 705 N ALA 103 -4.696 -5.444 14.804 1.00 0.00 N ATOM 706 CA ALA 103 -5.184 -5.876 16.109 1.00 0.00 C ATOM 707 C ALA 103 -6.612 -6.401 16.016 1.00 0.00 C ATOM 708 O ALA 103 -6.882 -7.553 16.352 1.00 0.00 O ATOM 709 CB ALA 103 -5.099 -4.734 17.112 1.00 0.00 C ATOM 710 CEN ALA 103 -5.100 -4.735 17.111 1.00 0.00 C ATOM 711 H ALA 103 -4.350 -4.501 14.697 1.00 0.00 H ATOM 712 N LYS 104 -7.521 -5.547 15.557 1.00 0.00 N ATOM 713 CA LYS 104 -8.916 -5.936 15.382 1.00 0.00 C ATOM 714 C LYS 104 -9.079 -6.878 14.196 1.00 0.00 C ATOM 715 O LYS 104 -9.813 -7.864 14.271 1.00 0.00 O ATOM 716 CB LYS 104 -9.796 -4.700 15.197 1.00 0.00 C ATOM 717 CEN LYS 104 -11.199 -3.339 16.008 1.00 0.00 C ATOM 718 H LYS 104 -7.240 -4.606 15.325 1.00 0.00 H ATOM 719 N SER 105 -8.391 -6.569 13.101 1.00 0.00 N ATOM 720 CA SER 105 -8.453 -7.393 11.901 1.00 0.00 C ATOM 721 C SER 105 -7.642 -8.671 12.068 1.00 0.00 C ATOM 722 O SER 105 -7.929 -9.688 11.435 1.00 0.00 O ATOM 723 CB SER 105 -7.958 -6.606 10.702 1.00 0.00 C ATOM 724 CEN SER 105 -7.662 -6.252 10.414 1.00 0.00 C ATOM 725 H SER 105 -7.811 -5.742 13.102 1.00 0.00 H ATOM 726 N ILE 106 -6.626 -8.614 12.922 1.00 0.00 N ATOM 727 CA ILE 106 -5.740 -9.752 13.136 1.00 0.00 C ATOM 728 C ILE 106 -6.407 -10.818 13.995 1.00 0.00 C ATOM 729 O ILE 106 -5.919 -11.943 14.097 1.00 0.00 O ATOM 730 CB ILE 106 -4.419 -9.322 13.801 1.00 0.00 C ATOM 731 CEN ILE 106 -3.415 -8.936 13.624 1.00 0.00 C ATOM 732 H ILE 106 -6.464 -7.761 13.437 1.00 0.00 H ATOM 733 N GLY 107 -7.526 -10.456 14.612 1.00 0.00 N ATOM 734 CA GLY 107 -8.266 -11.382 15.463 1.00 0.00 C ATOM 735 C GLY 107 -7.664 -11.446 16.861 1.00 0.00 C ATOM 736 O GLY 107 -7.826 -12.438 17.571 1.00 0.00 O ATOM 737 CEN GLY 107 -8.267 -11.382 15.464 1.00 0.00 C ATOM 738 H GLY 107 -7.875 -9.516 14.490 1.00 0.00 H ATOM 739 N LEU 108 -6.968 -10.383 17.249 1.00 0.00 N ATOM 740 CA LEU 108 -6.330 -10.322 18.559 1.00 0.00 C ATOM 741 C LEU 108 -7.297 -9.808 19.619 1.00 0.00 C ATOM 742 O LEU 108 -8.150 -8.966 19.339 1.00 0.00 O ATOM 743 CB LEU 108 -5.082 -9.433 18.499 1.00 0.00 C ATOM 744 CEN LEU 108 -3.574 -9.749 18.471 1.00 0.00 C ATOM 745 H LEU 108 -6.879 -9.597 16.622 1.00 0.00 H ATOM 746 N ASP 109 -7.158 -10.321 20.837 1.00 0.00 N ATOM 747 CA ASP 109 -8.034 -9.933 21.936 1.00 0.00 C ATOM 748 C ASP 109 -7.833 -8.470 22.310 1.00 0.00 C ATOM 749 O ASP 109 -6.818 -7.865 21.967 1.00 0.00 O ATOM 750 CB ASP 109 -7.792 -10.825 23.156 1.00 0.00 C ATOM 751 CEN ASP 109 -8.177 -11.651 23.613 1.00 0.00 C ATOM 752 H ASP 109 -6.426 -10.997 21.006 1.00 0.00 H ATOM 753 N ASP 110 -8.808 -7.906 23.016 1.00 0.00 N ATOM 754 CA ASP 110 -8.733 -6.516 23.450 1.00 0.00 C ATOM 755 C ASP 110 -7.595 -6.309 24.441 1.00 0.00 C ATOM 756 O ASP 110 -6.913 -5.285 24.413 1.00 0.00 O ATOM 757 CB ASP 110 -10.060 -6.078 24.075 1.00 0.00 C ATOM 758 CEN ASP 110 -10.916 -5.582 23.832 1.00 0.00 C ATOM 759 H ASP 110 -9.621 -8.454 23.258 1.00 0.00 H ATOM 760 N GLN 111 -7.394 -7.288 25.317 1.00 0.00 N ATOM 761 CA GLN 111 -6.327 -7.221 26.309 1.00 0.00 C ATOM 762 C GLN 111 -4.957 -7.324 25.652 1.00 0.00 C ATOM 763 O GLN 111 -4.041 -6.570 25.982 1.00 0.00 O ATOM 764 CB GLN 111 -6.488 -8.338 27.344 1.00 0.00 C ATOM 765 CEN GLN 111 -7.048 -8.710 28.956 1.00 0.00 C ATOM 766 H GLN 111 -7.996 -8.099 25.295 1.00 0.00 H ATOM 767 N THR 112 -4.822 -8.260 24.718 1.00 0.00 N ATOM 768 CA THR 112 -3.554 -8.481 24.034 1.00 0.00 C ATOM 769 C THR 112 -3.113 -7.237 23.274 1.00 0.00 C ATOM 770 O THR 112 -1.918 -6.989 23.111 1.00 0.00 O ATOM 771 CB THR 112 -3.642 -9.665 23.052 1.00 0.00 C ATOM 772 CEN THR 112 -3.738 -10.229 22.935 1.00 0.00 C ATOM 773 H THR 112 -5.618 -8.832 24.477 1.00 0.00 H ATOM 774 N ALA 113 -4.084 -6.457 22.812 1.00 0.00 N ATOM 775 CA ALA 113 -3.802 -5.295 21.978 1.00 0.00 C ATOM 776 C ALA 113 -2.852 -4.331 22.678 1.00 0.00 C ATOM 777 O ALA 113 -1.850 -3.907 22.104 1.00 0.00 O ATOM 778 CB ALA 113 -5.096 -4.588 21.598 1.00 0.00 C ATOM 779 CEN ALA 113 -5.095 -4.589 21.598 1.00 0.00 C ATOM 780 H ALA 113 -5.043 -6.674 23.045 1.00 0.00 H ATOM 781 N ILE 114 -3.175 -3.990 23.920 1.00 0.00 N ATOM 782 CA ILE 114 -2.378 -3.037 24.684 1.00 0.00 C ATOM 783 C ILE 114 -1.035 -3.636 25.081 1.00 0.00 C ATOM 784 O ILE 114 0.016 -3.038 24.847 1.00 0.00 O ATOM 785 CB ILE 114 -3.116 -2.571 25.952 1.00 0.00 C ATOM 786 CEN ILE 114 -3.836 -1.856 26.354 1.00 0.00 C ATOM 787 H ILE 114 -3.994 -4.399 24.346 1.00 0.00 H ATOM 788 N GLU 115 -1.076 -4.820 25.682 1.00 0.00 N ATOM 789 CA GLU 115 0.140 -5.517 26.084 1.00 0.00 C ATOM 790 C GLU 115 0.985 -5.895 24.874 1.00 0.00 C ATOM 791 O GLU 115 2.213 -5.832 24.918 1.00 0.00 O ATOM 792 CB GLU 115 -0.203 -6.768 26.896 1.00 0.00 C ATOM 793 CEN GLU 115 -0.378 -7.551 28.400 1.00 0.00 C ATOM 794 H GLU 115 -1.972 -5.248 25.866 1.00 0.00 H ATOM 795 N LEU 116 0.318 -6.286 23.793 1.00 0.00 N ATOM 796 CA LEU 116 1.003 -6.622 22.550 1.00 0.00 C ATOM 797 C LEU 116 1.878 -5.470 22.074 1.00 0.00 C ATOM 798 O LEU 116 3.086 -5.628 21.893 1.00 0.00 O ATOM 799 CB LEU 116 -0.017 -7.000 21.468 1.00 0.00 C ATOM 800 CEN LEU 116 -0.450 -8.350 20.867 1.00 0.00 C ATOM 801 H LEU 116 -0.689 -6.353 23.833 1.00 0.00 H ATOM 802 N LEU 117 1.262 -4.310 21.874 1.00 0.00 N ATOM 803 CA LEU 117 1.985 -3.126 21.424 1.00 0.00 C ATOM 804 C LEU 117 2.956 -2.634 22.491 1.00 0.00 C ATOM 805 O LEU 117 4.038 -2.139 22.178 1.00 0.00 O ATOM 806 CB LEU 117 0.999 -2.013 21.047 1.00 0.00 C ATOM 807 CEN LEU 117 0.509 -1.465 19.693 1.00 0.00 C ATOM 808 H LEU 117 0.268 -4.246 22.038 1.00 0.00 H ATOM 809 N ILE 118 2.561 -2.775 23.752 1.00 0.00 N ATOM 810 CA ILE 118 3.393 -2.340 24.867 1.00 0.00 C ATOM 811 C ILE 118 4.724 -3.080 24.883 1.00 0.00 C ATOM 812 O ILE 118 5.779 -2.476 25.077 1.00 0.00 O ATOM 813 CB ILE 118 2.684 -2.552 26.217 1.00 0.00 C ATOM 814 CEN ILE 118 1.989 -2.119 26.938 1.00 0.00 C ATOM 815 H ILE 118 1.661 -3.192 23.942 1.00 0.00 H ATOM 816 N LYS 119 4.669 -4.391 24.677 1.00 0.00 N ATOM 817 CA LYS 119 5.870 -5.217 24.673 1.00 0.00 C ATOM 818 C LYS 119 6.674 -5.014 23.395 1.00 0.00 C ATOM 819 O LYS 119 7.862 -5.333 23.339 1.00 0.00 O ATOM 820 CB LYS 119 5.505 -6.694 24.835 1.00 0.00 C ATOM 821 CEN LYS 119 5.402 -8.406 26.074 1.00 0.00 C ATOM 822 H LYS 119 3.772 -4.827 24.519 1.00 0.00 H ATOM 823 N ARG 120 6.020 -4.482 22.369 1.00 0.00 N ATOM 824 CA ARG 120 6.681 -4.202 21.099 1.00 0.00 C ATOM 825 C ARG 120 7.455 -2.892 21.159 1.00 0.00 C ATOM 826 O ARG 120 8.329 -2.638 20.329 1.00 0.00 O ATOM 827 CB ARG 120 5.709 -4.222 19.929 1.00 0.00 C ATOM 828 CEN ARG 120 4.417 -5.030 17.972 1.00 0.00 C ATOM 829 H ARG 120 5.038 -4.265 22.469 1.00 0.00 H ATOM 830 N SER 121 7.131 -2.063 22.146 1.00 0.00 N ATOM 831 CA SER 121 7.835 -0.803 22.351 1.00 0.00 C ATOM 832 C SER 121 9.252 -1.040 22.857 1.00 0.00 C ATOM 833 O SER 121 10.184 -0.330 22.480 1.00 0.00 O ATOM 834 CB SER 121 7.067 0.073 23.320 1.00 0.00 C ATOM 835 CEN SER 121 6.754 0.208 23.744 1.00 0.00 C ATOM 836 H SER 121 6.377 -2.313 22.770 1.00 0.00 H ATOM 837 N ARG 122 9.408 -2.042 23.715 1.00 0.00 N ATOM 838 CA ARG 122 10.709 -2.362 24.293 1.00 0.00 C ATOM 839 C ARG 122 11.721 -2.713 23.209 1.00 0.00 C ATOM 840 O ARG 122 12.891 -2.340 23.296 1.00 0.00 O ATOM 841 CB ARG 122 10.617 -3.457 25.344 1.00 0.00 C ATOM 842 CEN ARG 122 10.442 -4.574 27.552 1.00 0.00 C ATOM 843 H ARG 122 8.605 -2.598 23.974 1.00 0.00 H ATOM 844 N ASN 123 11.263 -3.429 22.189 1.00 0.00 N ATOM 845 CA ASN 123 12.122 -3.812 21.075 1.00 0.00 C ATOM 846 C ASN 123 12.460 -2.611 20.202 1.00 0.00 C ATOM 847 O ASN 123 13.608 -2.427 19.799 1.00 0.00 O ATOM 848 CB ASN 123 11.490 -4.908 20.237 1.00 0.00 C ATOM 849 CEN ASN 123 11.495 -5.957 20.189 1.00 0.00 C ATOM 850 H ASN 123 10.295 -3.717 22.184 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 194 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 25.02 86.8 76 100.0 76 ARMSMC SECONDARY STRUCTURE . . 19.29 90.6 64 100.0 64 ARMSMC SURFACE . . . . . . . . 25.66 86.1 72 100.0 72 ARMSMC BURIED . . . . . . . . 6.58 100.0 4 100.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 34 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 24 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.46 (Number of atoms: 39) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.46 39 100.0 39 CRMSCA CRN = ALL/NP . . . . . 0.1655 CRMSCA SECONDARY STRUCTURE . . 6.24 32 100.0 32 CRMSCA SURFACE . . . . . . . . 6.54 37 100.0 37 CRMSCA BURIED . . . . . . . . 4.65 2 100.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.44 194 100.0 194 CRMSMC SECONDARY STRUCTURE . . 6.23 160 100.0 160 CRMSMC SURFACE . . . . . . . . 6.51 184 100.0 184 CRMSMC BURIED . . . . . . . . 4.84 10 100.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.07 38 24.2 157 CRMSSC RELIABLE SIDE CHAINS . 7.07 38 27.3 139 CRMSSC SECONDARY STRUCTURE . . 6.91 32 24.6 130 CRMSSC SURFACE . . . . . . . . 7.16 36 23.2 155 CRMSSC BURIED . . . . . . . . 4.97 2 100.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.44 194 62.0 313 CRMSALL SECONDARY STRUCTURE . . 6.23 160 62.0 258 CRMSALL SURFACE . . . . . . . . 6.51 184 60.7 303 CRMSALL BURIED . . . . . . . . 4.84 10 100.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.919 1.000 0.500 39 100.0 39 ERRCA SECONDARY STRUCTURE . . 5.736 1.000 0.500 32 100.0 32 ERRCA SURFACE . . . . . . . . 6.003 1.000 0.500 37 100.0 37 ERRCA BURIED . . . . . . . . 4.369 1.000 0.500 2 100.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.905 1.000 0.500 194 100.0 194 ERRMC SECONDARY STRUCTURE . . 5.713 1.000 0.500 160 100.0 160 ERRMC SURFACE . . . . . . . . 5.978 1.000 0.500 184 100.0 184 ERRMC BURIED . . . . . . . . 4.552 1.000 0.500 10 100.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.504 1.000 0.500 38 24.2 157 ERRSC RELIABLE SIDE CHAINS . 6.504 1.000 0.500 38 27.3 139 ERRSC SECONDARY STRUCTURE . . 6.371 1.000 0.500 32 24.6 130 ERRSC SURFACE . . . . . . . . 6.599 1.000 0.500 36 23.2 155 ERRSC BURIED . . . . . . . . 4.784 1.000 0.500 2 100.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.905 1.000 0.500 194 62.0 313 ERRALL SECONDARY STRUCTURE . . 5.713 1.000 0.500 160 62.0 258 ERRALL SURFACE . . . . . . . . 5.978 1.000 0.500 184 60.7 303 ERRALL BURIED . . . . . . . . 4.552 1.000 0.500 10 100.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 5 17 35 39 39 DISTCA CA (P) 0.00 0.00 12.82 43.59 89.74 39 DISTCA CA (RMS) 0.00 0.00 2.48 3.86 5.64 DISTCA ALL (N) 0 4 23 84 178 194 313 DISTALL ALL (P) 0.00 1.28 7.35 26.84 56.87 313 DISTALL ALL (RMS) 0.00 1.63 2.46 3.79 5.77 DISTALL END of the results output