####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 25 ( 198), selected 25 , name T0586TS165_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 25 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS165_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 85 - 109 0.86 0.86 LCS_AVERAGE: 64.10 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 85 - 109 0.86 0.86 LCS_AVERAGE: 64.10 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 85 - 109 0.86 0.86 LCS_AVERAGE: 64.10 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 25 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 25 25 25 15 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT Q 86 Q 86 25 25 25 12 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT L 87 L 87 25 25 25 12 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT K 88 K 88 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT K 89 K 89 25 25 25 10 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT E 90 E 90 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT L 91 L 91 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT A 92 A 92 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT D 93 D 93 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT A 94 A 94 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT I 95 I 95 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT T 96 T 96 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT E 97 E 97 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT R 98 R 98 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT F 99 F 99 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT L 100 L 100 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT E 101 E 101 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT E 102 E 102 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT A 103 A 103 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT K 104 K 104 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT S 105 S 105 25 25 25 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT I 106 I 106 25 25 25 4 21 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT G 107 G 107 25 25 25 16 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT L 108 L 108 25 25 25 4 19 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_GDT D 109 D 109 25 25 25 4 6 7 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 LCS_AVERAGE LCS_A: 64.10 ( 64.10 64.10 64.10 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 17 22 24 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 GDT PERCENT_AT 43.59 56.41 61.54 64.10 64.10 64.10 64.10 64.10 64.10 64.10 64.10 64.10 64.10 64.10 64.10 64.10 64.10 64.10 64.10 64.10 GDT RMS_LOCAL 0.33 0.52 0.72 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 GDT RMS_ALL_AT 1.08 1.08 0.91 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 # Checking swapping # possible swapping detected: D 85 D 85 # possible swapping detected: D 109 D 109 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 0.336 0 0.040 0.148 0.938 97.619 95.238 LGA Q 86 Q 86 1.327 0 0.049 1.219 3.537 81.429 65.026 LGA L 87 L 87 1.418 0 0.038 1.141 3.110 83.690 71.488 LGA K 88 K 88 0.886 0 0.028 0.257 2.572 90.476 80.952 LGA K 89 K 89 0.926 0 0.044 0.725 3.287 90.595 71.534 LGA E 90 E 90 0.580 0 0.041 0.150 1.538 95.238 87.619 LGA L 91 L 91 0.488 0 0.056 0.966 2.963 95.238 85.357 LGA A 92 A 92 0.849 0 0.034 0.049 0.964 90.476 90.476 LGA D 93 D 93 0.536 0 0.044 0.156 1.463 95.238 90.595 LGA A 94 A 94 0.257 0 0.042 0.044 0.344 100.000 100.000 LGA I 95 I 95 0.706 0 0.028 0.984 2.697 92.857 82.024 LGA T 96 T 96 0.648 0 0.042 1.177 2.435 90.476 83.129 LGA E 97 E 97 0.321 0 0.034 0.604 2.249 100.000 91.005 LGA R 98 R 98 0.437 0 0.066 1.275 7.186 95.238 66.190 LGA F 99 F 99 0.974 0 0.024 0.150 2.507 90.476 77.143 LGA L 100 L 100 0.877 0 0.064 0.950 2.981 90.476 84.048 LGA E 101 E 101 0.336 0 0.036 1.106 4.628 100.000 78.942 LGA E 102 E 102 0.230 0 0.034 0.168 1.187 100.000 94.762 LGA A 103 A 103 0.378 0 0.034 0.053 0.592 97.619 96.190 LGA K 104 K 104 0.697 0 0.042 0.162 2.035 92.857 84.709 LGA S 105 S 105 0.602 0 0.095 0.542 1.882 88.214 86.032 LGA I 106 I 106 0.999 0 0.252 1.393 4.259 92.857 79.464 LGA G 107 G 107 0.187 0 0.126 0.126 1.122 90.595 90.595 LGA L 108 L 108 1.347 0 0.134 1.004 5.107 79.405 66.369 LGA D 109 D 109 2.085 0 0.044 0.919 6.933 59.524 42.500 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 25 100 100 100.00 198 198 100.00 39 SUMMARY(RMSD_GDC): 0.859 0.903 1.854 58.477 52.343 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 25 39 4.0 25 0.86 62.179 63.304 2.606 LGA_LOCAL RMSD: 0.859 Number of atoms: 25 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 0.859 Number of assigned atoms: 25 Std_ASGN_ATOMS RMSD: 0.859 Standard rmsd on all 25 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.437832 * X + -0.891190 * Y + 0.118673 * Z + 66.819702 Y_new = -0.038323 * X + -0.113378 * Y + -0.992813 * Z + 39.762169 Z_new = 0.898239 * X + -0.439233 * Y + 0.015488 * Z + 24.557802 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.054287 -1.115747 -1.535550 [DEG: -174.9978 -63.9276 -87.9805 ] ZXZ: 0.118968 1.555308 2.025600 [DEG: 6.8164 89.1126 116.0583 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS165_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS165_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 25 39 4.0 25 0.86 63.304 0.86 REMARK ---------------------------------------------------------- MOLECULE T0586TS165_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT 3by6_A ATOM 668 N ASP 85 1.491 20.919 16.138 1.00 26.24 N ATOM 669 CA ASP 85 1.568 19.736 16.947 1.00 26.24 C ATOM 670 CB ASP 85 1.738 20.051 18.441 1.00 26.24 C ATOM 671 CG ASP 85 3.101 20.694 18.623 1.00 26.24 C ATOM 672 OD1 ASP 85 3.896 20.662 17.647 1.00 26.24 O ATOM 673 OD2 ASP 85 3.363 21.232 19.732 1.00 26.24 O ATOM 674 C ASP 85 0.305 18.944 16.815 1.00 26.24 C ATOM 675 O ASP 85 0.346 17.717 16.750 1.00 26.24 O ATOM 676 N GLN 86 -0.860 19.621 16.770 1.00 28.94 N ATOM 677 CA GLN 86 -2.117 18.923 16.719 1.00 28.94 C ATOM 678 CB GLN 86 -3.326 19.873 16.751 1.00 28.94 C ATOM 679 CG GLN 86 -3.471 20.626 18.075 1.00 28.94 C ATOM 680 CD GLN 86 -4.687 21.536 17.978 1.00 28.94 C ATOM 681 OE1 GLN 86 -5.094 22.167 18.952 1.00 28.94 O ATOM 682 NE2 GLN 86 -5.286 21.613 16.759 1.00 28.94 N ATOM 683 C GLN 86 -2.202 18.129 15.453 1.00 28.94 C ATOM 684 O GLN 86 -2.670 16.991 15.450 1.00 28.94 O ATOM 685 N LEU 87 -1.737 18.709 14.333 1.00117.92 N ATOM 686 CA LEU 87 -1.823 18.008 13.087 1.00117.92 C ATOM 687 CB LEU 87 -1.289 18.836 11.894 1.00117.92 C ATOM 688 CG LEU 87 -1.564 18.267 10.476 1.00117.92 C ATOM 689 CD1 LEU 87 -0.980 19.201 9.402 1.00117.92 C ATOM 690 CD2 LEU 87 -1.077 16.818 10.288 1.00117.92 C ATOM 691 C LEU 87 -0.997 16.769 13.217 1.00117.92 C ATOM 692 O LEU 87 -1.419 15.697 12.793 1.00117.92 O ATOM 693 N LYS 88 0.202 16.863 13.815 1.00 79.69 N ATOM 694 CA LYS 88 1.003 15.678 13.867 1.00 79.69 C ATOM 695 CB LYS 88 2.375 15.847 14.490 1.00 79.69 C ATOM 696 CG LYS 88 3.087 14.495 14.549 1.00 79.69 C ATOM 697 CD LYS 88 4.559 14.625 14.910 1.00 79.69 C ATOM 698 CE LYS 88 5.186 13.288 15.267 1.00 79.69 C ATOM 699 NZ LYS 88 6.500 13.506 15.920 1.00 79.69 N ATOM 700 C LYS 88 0.337 14.630 14.690 1.00 79.69 C ATOM 701 O LYS 88 0.409 13.446 14.364 1.00 79.69 O ATOM 702 N LYS 89 -0.308 15.031 15.799 1.00 26.15 N ATOM 703 CA LYS 89 -0.908 14.054 16.655 1.00 26.15 C ATOM 704 CB LYS 89 -1.572 14.637 17.915 1.00 26.15 C ATOM 705 CG LYS 89 -0.572 15.101 18.978 1.00 26.15 C ATOM 706 CD LYS 89 -1.214 15.893 20.119 1.00 26.15 C ATOM 707 CE LYS 89 -0.218 16.304 21.205 1.00 26.15 C ATOM 708 NZ LYS 89 -0.911 17.063 22.269 1.00 26.15 N ATOM 709 C LYS 89 -1.957 13.333 15.879 1.00 26.15 C ATOM 710 O LYS 89 -2.131 12.126 16.038 1.00 26.15 O ATOM 711 N GLU 90 -2.686 14.055 15.011 1.00 23.02 N ATOM 712 CA GLU 90 -3.738 13.442 14.257 1.00 23.02 C ATOM 713 CB GLU 90 -4.539 14.433 13.396 1.00 23.02 C ATOM 714 CG GLU 90 -5.445 15.349 14.224 1.00 23.02 C ATOM 715 CD GLU 90 -6.220 16.253 13.274 1.00 23.02 C ATOM 716 OE1 GLU 90 -5.924 16.224 12.050 1.00 23.02 O ATOM 717 OE2 GLU 90 -7.124 16.982 13.761 1.00 23.02 O ATOM 718 C GLU 90 -3.152 12.401 13.361 1.00 23.02 C ATOM 719 O GLU 90 -3.754 11.348 13.158 1.00 23.02 O ATOM 720 N LEU 91 -1.957 12.661 12.801 1.00 73.59 N ATOM 721 CA LEU 91 -1.354 11.698 11.928 1.00 73.59 C ATOM 722 CB LEU 91 0.014 12.183 11.399 1.00 73.59 C ATOM 723 CG LEU 91 0.696 11.318 10.311 1.00 73.59 C ATOM 724 CD1 LEU 91 2.039 11.940 9.899 1.00 73.59 C ATOM 725 CD2 LEU 91 0.861 9.843 10.713 1.00 73.59 C ATOM 726 C LEU 91 -1.145 10.470 12.757 1.00 73.59 C ATOM 727 O LEU 91 -1.403 9.355 12.307 1.00 73.59 O ATOM 728 N ALA 92 -0.671 10.657 14.003 1.00 19.53 N ATOM 729 CA ALA 92 -0.415 9.571 14.904 1.00 19.53 C ATOM 730 CB ALA 92 0.201 10.033 16.236 1.00 19.53 C ATOM 731 C ALA 92 -1.704 8.881 15.221 1.00 19.53 C ATOM 732 O ALA 92 -1.763 7.657 15.315 1.00 19.53 O ATOM 733 N ASP 93 -2.790 9.646 15.405 1.00 22.53 N ATOM 734 CA ASP 93 -4.033 9.023 15.744 1.00 22.53 C ATOM 735 CB ASP 93 -5.153 10.041 16.010 1.00 22.53 C ATOM 736 CG ASP 93 -4.800 10.750 17.311 1.00 22.53 C ATOM 737 OD1 ASP 93 -3.809 10.321 17.962 1.00 22.53 O ATOM 738 OD2 ASP 93 -5.507 11.729 17.669 1.00 22.53 O ATOM 739 C ASP 93 -4.441 8.147 14.604 1.00 22.53 C ATOM 740 O ASP 93 -5.008 7.075 14.804 1.00 22.53 O ATOM 741 N ALA 94 -4.164 8.580 13.364 1.00 18.80 N ATOM 742 CA ALA 94 -4.543 7.780 12.240 1.00 18.80 C ATOM 743 CB ALA 94 -4.190 8.436 10.895 1.00 18.80 C ATOM 744 C ALA 94 -3.813 6.472 12.308 1.00 18.80 C ATOM 745 O ALA 94 -4.402 5.420 12.070 1.00 18.80 O ATOM 746 N ILE 95 -2.508 6.499 12.648 1.00 74.07 N ATOM 747 CA ILE 95 -1.750 5.280 12.669 1.00 74.07 C ATOM 748 CB ILE 95 -0.264 5.457 12.877 1.00 74.07 C ATOM 749 CG2 ILE 95 0.019 5.840 14.336 1.00 74.07 C ATOM 750 CG1 ILE 95 0.477 4.175 12.466 1.00 74.07 C ATOM 751 CD1 ILE 95 1.995 4.347 12.399 1.00 74.07 C ATOM 752 C ILE 95 -2.272 4.381 13.743 1.00 74.07 C ATOM 753 O ILE 95 -2.413 3.177 13.533 1.00 74.07 O ATOM 754 N THR 96 -2.592 4.940 14.925 1.00 87.04 N ATOM 755 CA THR 96 -3.029 4.109 16.008 1.00 87.04 C ATOM 756 CB THR 96 -3.277 4.859 17.291 1.00 87.04 C ATOM 757 OG1 THR 96 -3.455 3.942 18.360 1.00 87.04 O ATOM 758 CG2 THR 96 -4.528 5.740 17.146 1.00 87.04 C ATOM 759 C THR 96 -4.291 3.417 15.606 1.00 87.04 C ATOM 760 O THR 96 -4.472 2.234 15.890 1.00 87.04 O ATOM 761 N GLU 97 -5.199 4.136 14.922 1.00 57.76 N ATOM 762 CA GLU 97 -6.451 3.556 14.532 1.00 57.76 C ATOM 763 CB GLU 97 -7.370 4.561 13.817 1.00 57.76 C ATOM 764 CG GLU 97 -8.716 3.971 13.390 1.00 57.76 C ATOM 765 CD GLU 97 -9.515 5.070 12.704 1.00 57.76 C ATOM 766 OE1 GLU 97 -8.981 6.206 12.591 1.00 57.76 O ATOM 767 OE2 GLU 97 -10.668 4.789 12.281 1.00 57.76 O ATOM 768 C GLU 97 -6.192 2.431 13.579 1.00 57.76 C ATOM 769 O GLU 97 -6.802 1.369 13.678 1.00 57.76 O ATOM 770 N ARG 98 -5.258 2.640 12.633 1.00 83.71 N ATOM 771 CA ARG 98 -4.962 1.677 11.610 1.00 83.71 C ATOM 772 CB ARG 98 -3.888 2.202 10.641 1.00 83.71 C ATOM 773 CG ARG 98 -3.508 1.235 9.518 1.00 83.71 C ATOM 774 CD ARG 98 -2.350 1.756 8.662 1.00 83.71 C ATOM 775 NE ARG 98 -2.036 0.727 7.631 1.00 83.71 N ATOM 776 CZ ARG 98 -0.902 0.849 6.880 1.00 83.71 C ATOM 777 NH1 ARG 98 -0.062 1.905 7.081 1.00 83.71 H ATOM 778 NH2 ARG 98 -0.607 -0.087 5.930 1.00 83.71 H ATOM 779 C ARG 98 -4.436 0.412 12.213 1.00 83.71 C ATOM 780 O ARG 98 -4.867 -0.680 11.847 1.00 83.71 O ATOM 781 N PHE 99 -3.494 0.527 13.165 1.00 72.06 N ATOM 782 CA PHE 99 -2.868 -0.631 13.736 1.00 72.06 C ATOM 783 CB PHE 99 -1.748 -0.264 14.724 1.00 72.06 C ATOM 784 CG PHE 99 -1.165 -1.532 15.248 1.00 72.06 C ATOM 785 CD1 PHE 99 -0.198 -2.200 14.534 1.00 72.06 C ATOM 786 CD2 PHE 99 -1.582 -2.050 16.452 1.00 72.06 C ATOM 787 CE1 PHE 99 0.344 -3.371 15.011 1.00 72.06 C ATOM 788 CE2 PHE 99 -1.044 -3.220 16.934 1.00 72.06 C ATOM 789 CZ PHE 99 -0.077 -3.882 16.214 1.00 72.06 C ATOM 790 C PHE 99 -3.885 -1.436 14.479 1.00 72.06 C ATOM 791 O PHE 99 -3.944 -2.657 14.336 1.00 72.06 O ATOM 792 N LEU 100 -4.726 -0.764 15.285 1.00 72.63 N ATOM 793 CA LEU 100 -5.681 -1.452 16.103 1.00 72.63 C ATOM 794 CB LEU 100 -6.471 -0.485 17.011 1.00 72.63 C ATOM 795 CG LEU 100 -7.354 -1.125 18.114 1.00 72.63 C ATOM 796 CD1 LEU 100 -8.069 -0.032 18.924 1.00 72.63 C ATOM 797 CD2 LEU 100 -8.347 -2.170 17.580 1.00 72.63 C ATOM 798 C LEU 100 -6.634 -2.168 15.201 1.00 72.63 C ATOM 799 O LEU 100 -6.995 -3.315 15.461 1.00 72.63 O ATOM 800 N GLU 101 -7.057 -1.518 14.104 1.00 58.11 N ATOM 801 CA GLU 101 -8.021 -2.129 13.237 1.00 58.11 C ATOM 802 CB GLU 101 -8.383 -1.254 12.027 1.00 58.11 C ATOM 803 CG GLU 101 -9.414 -1.909 11.106 1.00 58.11 C ATOM 804 CD GLU 101 -9.661 -0.972 9.934 1.00 58.11 C ATOM 805 OE1 GLU 101 -9.068 0.139 9.929 1.00 58.11 O ATOM 806 OE2 GLU 101 -10.444 -1.357 9.025 1.00 58.11 O ATOM 807 C GLU 101 -7.446 -3.394 12.694 1.00 58.11 C ATOM 808 O GLU 101 -8.121 -4.420 12.646 1.00 58.11 O ATOM 809 N GLU 102 -6.169 -3.353 12.278 1.00 22.78 N ATOM 810 CA GLU 102 -5.555 -4.514 11.712 1.00 22.78 C ATOM 811 CB GLU 102 -4.134 -4.246 11.187 1.00 22.78 C ATOM 812 CG GLU 102 -3.539 -5.424 10.411 1.00 22.78 C ATOM 813 CD GLU 102 -2.268 -4.943 9.727 1.00 22.78 C ATOM 814 OE1 GLU 102 -1.989 -3.716 9.792 1.00 22.78 O ATOM 815 OE2 GLU 102 -1.560 -5.794 9.125 1.00 22.78 O ATOM 816 C GLU 102 -5.482 -5.558 12.775 1.00 22.78 C ATOM 817 O GLU 102 -5.675 -6.743 12.509 1.00 22.78 O ATOM 818 N ALA 103 -5.205 -5.132 14.021 1.00 20.39 N ATOM 819 CA ALA 103 -5.083 -6.053 15.111 1.00 20.39 C ATOM 820 CB ALA 103 -4.730 -5.364 16.440 1.00 20.39 C ATOM 821 C ALA 103 -6.388 -6.755 15.304 1.00 20.39 C ATOM 822 O ALA 103 -6.420 -7.964 15.514 1.00 20.39 O ATOM 823 N LYS 104 -7.523 -6.039 15.235 1.00 58.66 N ATOM 824 CA LYS 104 -8.746 -6.757 15.438 1.00 58.66 C ATOM 825 CB LYS 104 -10.010 -5.883 15.458 1.00 58.66 C ATOM 826 CG LYS 104 -11.244 -6.702 15.846 1.00 58.66 C ATOM 827 CD LYS 104 -12.452 -5.870 16.273 1.00 58.66 C ATOM 828 CE LYS 104 -13.654 -6.726 16.677 1.00 58.66 C ATOM 829 NZ LYS 104 -14.762 -5.862 17.140 1.00 58.66 N ATOM 830 C LYS 104 -8.880 -7.738 14.323 1.00 58.66 C ATOM 831 O LYS 104 -9.342 -8.861 14.520 1.00 58.66 O ATOM 832 N SER 105 -8.459 -7.332 13.112 1.00 53.73 N ATOM 833 CA SER 105 -8.562 -8.191 11.973 1.00 53.73 C ATOM 834 CB SER 105 -8.054 -7.532 10.679 1.00 53.73 C ATOM 835 OG SER 105 -8.186 -8.430 9.588 1.00 53.73 O ATOM 836 C SER 105 -7.724 -9.400 12.236 1.00 53.73 C ATOM 837 O SER 105 -8.059 -10.500 11.798 1.00 53.73 O ATOM 838 N ILE 106 -6.611 -9.236 12.974 1.00 73.75 N ATOM 839 CA ILE 106 -5.777 -10.369 13.252 1.00 73.75 C ATOM 840 CB ILE 106 -4.506 -10.077 14.006 1.00 73.75 C ATOM 841 CG2 ILE 106 -4.800 -10.153 15.512 1.00 73.75 C ATOM 842 CG1 ILE 106 -3.432 -11.108 13.621 1.00 73.75 C ATOM 843 CD1 ILE 106 -2.022 -10.704 14.049 1.00 73.75 C ATOM 844 C ILE 106 -6.617 -11.288 14.077 1.00 73.75 C ATOM 845 O ILE 106 -6.509 -12.509 13.965 1.00 73.75 O ATOM 846 N GLY 107 -7.508 -10.713 14.915 1.00 50.27 N ATOM 847 CA GLY 107 -8.352 -11.525 15.745 1.00 50.27 C ATOM 848 C GLY 107 -8.173 -11.166 17.190 1.00 50.27 C ATOM 849 O GLY 107 -8.858 -11.717 18.051 1.00 50.27 O ATOM 850 N LEU 108 -7.247 -10.242 17.509 1.00256.25 N ATOM 851 CA LEU 108 -7.066 -9.846 18.881 1.00256.25 C ATOM 852 CB LEU 108 -5.751 -9.054 19.069 1.00256.25 C ATOM 853 CG LEU 108 -5.323 -8.711 20.513 1.00256.25 C ATOM 854 CD1 LEU 108 -3.994 -7.939 20.500 1.00256.25 C ATOM 855 CD2 LEU 108 -6.400 -7.952 21.302 1.00256.25 C ATOM 856 C LEU 108 -8.244 -8.986 19.258 1.00256.25 C ATOM 857 O LEU 108 -8.684 -8.153 18.467 1.00256.25 O ATOM 858 N ASP 109 -8.802 -9.185 20.477 1.00279.63 N ATOM 859 CA ASP 109 -9.941 -8.417 20.918 1.00279.63 C ATOM 860 CB ASP 109 -11.250 -9.227 20.886 1.00279.63 C ATOM 861 CG ASP 109 -12.428 -8.267 20.978 1.00279.63 C ATOM 862 OD1 ASP 109 -12.192 -7.030 20.975 1.00279.63 O ATOM 863 OD2 ASP 109 -13.586 -8.762 21.036 1.00279.63 O ATOM 864 C ASP 109 -9.716 -7.979 22.343 1.00279.63 C ATOM 865 O ASP 109 -9.030 -8.663 23.101 1.00279.63 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 198 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 16.83 91.7 48 63.2 76 ARMSMC SECONDARY STRUCTURE . . 5.11 100.0 40 62.5 64 ARMSMC SURFACE . . . . . . . . 17.17 91.3 46 63.9 72 ARMSMC BURIED . . . . . . . . 4.31 100.0 2 50.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.37 47.6 21 61.8 34 ARMSSC1 RELIABLE SIDE CHAINS . 84.37 47.6 21 61.8 34 ARMSSC1 SECONDARY STRUCTURE . . 79.72 47.1 17 60.7 28 ARMSSC1 SURFACE . . . . . . . . 84.37 47.6 21 61.8 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 58.84 68.4 19 63.3 30 ARMSSC2 RELIABLE SIDE CHAINS . 51.16 73.3 15 65.2 23 ARMSSC2 SECONDARY STRUCTURE . . 56.23 73.3 15 62.5 24 ARMSSC2 SURFACE . . . . . . . . 58.84 68.4 19 63.3 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.07 44.4 9 64.3 14 ARMSSC3 RELIABLE SIDE CHAINS . 69.97 50.0 8 66.7 12 ARMSSC3 SECONDARY STRUCTURE . . 84.07 44.4 9 69.2 13 ARMSSC3 SURFACE . . . . . . . . 84.07 44.4 9 64.3 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 38.63 75.0 4 57.1 7 ARMSSC4 RELIABLE SIDE CHAINS . 38.63 75.0 4 57.1 7 ARMSSC4 SECONDARY STRUCTURE . . 38.63 75.0 4 66.7 6 ARMSSC4 SURFACE . . . . . . . . 38.63 75.0 4 57.1 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 0.86 (Number of atoms: 25) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 0.86 25 64.1 39 CRMSCA CRN = ALL/NP . . . . . 0.0344 CRMSCA SECONDARY STRUCTURE . . 0.75 20 62.5 32 CRMSCA SURFACE . . . . . . . . 0.87 24 64.9 37 CRMSCA BURIED . . . . . . . . 0.38 1 50.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 0.97 124 63.9 194 CRMSMC SECONDARY STRUCTURE . . 0.75 100 62.5 160 CRMSMC SURFACE . . . . . . . . 0.99 119 64.7 184 CRMSMC BURIED . . . . . . . . 0.46 5 50.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 2.52 98 62.4 157 CRMSSC RELIABLE SIDE CHAINS . 2.45 88 63.3 139 CRMSSC SECONDARY STRUCTURE . . 2.27 82 63.1 130 CRMSSC SURFACE . . . . . . . . 2.53 97 62.6 155 CRMSSC BURIED . . . . . . . . 0.59 1 50.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.89 198 63.3 313 CRMSALL SECONDARY STRUCTURE . . 1.69 162 62.8 258 CRMSALL SURFACE . . . . . . . . 1.91 193 63.7 303 CRMSALL BURIED . . . . . . . . 0.46 5 50.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 69.553 0.971 0.972 25 64.1 39 ERRCA SECONDARY STRUCTURE . . 52.882 0.968 0.969 20 62.5 32 ERRCA SURFACE . . . . . . . . 71.617 0.971 0.972 24 64.9 37 ERRCA BURIED . . . . . . . . 20.012 0.964 0.964 1 50.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 69.665 0.970 0.970 124 63.9 194 ERRMC SECONDARY STRUCTURE . . 52.891 0.968 0.969 100 62.5 160 ERRMC SURFACE . . . . . . . . 71.754 0.970 0.971 119 64.7 184 ERRMC BURIED . . . . . . . . 19.948 0.958 0.959 5 50.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 72.213 0.929 0.933 98 62.4 157 ERRSC RELIABLE SIDE CHAINS . 68.262 0.931 0.934 88 63.3 139 ERRSC SECONDARY STRUCTURE . . 55.840 0.924 0.928 82 63.1 130 ERRSC SURFACE . . . . . . . . 72.753 0.929 0.933 97 62.6 155 ERRSC BURIED . . . . . . . . 19.798 0.944 0.945 1 50.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 70.869 0.951 0.953 198 63.3 313 ERRALL SECONDARY STRUCTURE . . 54.403 0.947 0.949 162 62.8 258 ERRALL SURFACE . . . . . . . . 72.188 0.951 0.953 193 63.7 303 ERRALL BURIED . . . . . . . . 19.948 0.958 0.959 5 50.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 21 24 25 25 25 25 39 DISTCA CA (P) 53.85 61.54 64.10 64.10 64.10 39 DISTCA CA (RMS) 0.64 0.77 0.86 0.86 0.86 DISTCA ALL (N) 107 153 177 192 198 198 313 DISTALL ALL (P) 34.19 48.88 56.55 61.34 63.26 313 DISTALL ALL (RMS) 0.63 0.95 1.27 1.59 1.89 DISTALL END of the results output