####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 39 ( 272), selected 39 , name T0586TS042_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 39 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS042_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 90 - 123 4.78 7.65 LCS_AVERAGE: 84.48 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 102 - 123 1.93 10.49 LCS_AVERAGE: 49.18 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 108 - 123 0.84 10.75 LCS_AVERAGE: 31.36 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 39 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 7 12 22 6 6 7 10 11 12 12 13 14 15 16 17 18 18 19 20 23 23 26 27 LCS_GDT Q 86 Q 86 7 12 23 6 6 7 10 11 12 12 13 15 15 16 17 18 20 22 25 27 30 33 36 LCS_GDT L 87 L 87 7 12 24 6 6 7 10 11 12 12 13 16 16 17 19 20 20 21 23 24 26 31 32 LCS_GDT K 88 K 88 7 12 27 6 6 7 10 11 12 12 13 16 16 17 19 20 20 22 24 27 30 33 36 LCS_GDT K 89 K 89 7 12 33 6 6 8 10 11 12 14 15 18 18 21 24 28 31 34 35 35 35 35 36 LCS_GDT E 90 E 90 7 12 34 6 6 8 10 11 12 14 15 18 20 21 24 28 31 34 35 35 35 35 36 LCS_GDT L 91 L 91 7 13 34 5 5 8 10 11 15 16 16 18 20 21 23 28 30 34 35 35 35 35 36 LCS_GDT A 92 A 92 6 15 34 5 5 8 10 11 15 16 16 19 24 28 29 31 32 34 35 35 35 35 36 LCS_GDT D 93 D 93 6 16 34 5 5 9 12 15 19 20 23 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT A 94 A 94 6 16 34 5 5 8 10 13 15 17 20 21 23 24 26 30 32 34 35 35 35 35 36 LCS_GDT I 95 I 95 12 16 34 5 9 11 12 15 18 19 21 22 24 28 30 31 32 34 35 35 35 35 36 LCS_GDT T 96 T 96 12 19 34 6 10 11 13 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT E 97 E 97 12 19 34 7 10 11 12 17 20 21 23 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT R 98 R 98 12 19 34 6 10 11 12 16 19 20 22 23 26 27 30 31 32 34 35 35 35 35 36 LCS_GDT F 99 F 99 12 19 34 7 10 11 13 17 20 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT L 100 L 100 12 20 34 7 10 11 17 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT E 101 E 101 12 20 34 7 10 11 12 17 20 21 24 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT E 102 E 102 12 22 34 7 10 11 13 17 20 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT A 103 A 103 12 22 34 7 11 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT K 104 K 104 12 22 34 7 10 11 12 17 21 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT S 105 S 105 12 22 34 3 9 11 15 20 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT I 106 I 106 12 22 34 3 10 11 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT G 107 G 107 10 22 34 3 6 10 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT L 108 L 108 16 22 34 4 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT D 109 D 109 16 22 34 5 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT D 110 D 110 16 22 34 5 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT Q 111 Q 111 16 22 34 5 10 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT T 112 T 112 16 22 34 11 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT A 113 A 113 16 22 34 11 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT I 114 I 114 16 22 34 11 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT E 115 E 115 16 22 34 11 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT L 116 L 116 16 22 34 11 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT L 117 L 117 16 22 34 11 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT I 118 I 118 16 22 34 11 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT K 119 K 119 16 22 34 11 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT R 120 R 120 16 22 34 11 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT S 121 S 121 16 22 34 11 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_GDT R 122 R 122 16 22 34 11 14 16 19 21 22 23 25 26 28 28 30 31 32 33 35 35 35 35 36 LCS_GDT N 123 N 123 16 22 34 3 3 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 LCS_AVERAGE LCS_A: 55.01 ( 31.36 49.18 84.48 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 14 16 19 21 22 23 25 26 28 28 30 31 32 34 35 35 35 35 36 GDT PERCENT_AT 28.21 35.90 41.03 48.72 53.85 56.41 58.97 64.10 66.67 71.79 71.79 76.92 79.49 82.05 87.18 89.74 89.74 89.74 89.74 92.31 GDT RMS_LOCAL 0.22 0.67 0.82 1.25 1.59 1.73 1.87 2.18 2.40 2.85 2.85 3.33 3.66 3.94 4.98 5.00 5.00 5.00 5.00 5.45 GDT RMS_ALL_AT 10.85 10.84 10.56 10.20 10.07 10.11 10.14 10.07 10.21 9.69 9.69 9.36 8.84 8.61 7.32 7.33 7.33 7.33 7.33 7.08 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 27.634 3 0.044 0.046 29.480 0.000 0.000 LGA Q 86 Q 86 25.669 4 0.050 0.055 27.561 0.000 0.000 LGA L 87 L 87 24.403 3 0.013 0.017 26.048 0.000 0.000 LGA K 88 K 88 20.238 4 0.015 0.014 22.104 0.000 0.000 LGA K 89 K 89 16.899 4 0.064 0.067 18.665 0.000 0.000 LGA E 90 E 90 17.743 4 0.026 0.030 20.504 0.000 0.000 LGA L 91 L 91 16.577 3 0.195 0.199 18.264 0.000 0.000 LGA A 92 A 92 10.710 0 0.008 0.010 12.990 4.524 3.619 LGA D 93 D 93 7.517 3 0.018 0.025 8.657 5.000 2.857 LGA A 94 A 94 12.000 0 0.008 0.011 14.590 0.000 0.000 LGA I 95 I 95 9.084 3 0.213 0.217 10.053 7.976 3.988 LGA T 96 T 96 3.270 2 0.093 0.100 5.467 45.833 36.599 LGA E 97 E 97 6.226 4 0.024 0.028 8.236 19.405 9.153 LGA R 98 R 98 7.777 6 0.027 0.026 9.349 12.857 4.805 LGA F 99 F 99 4.115 6 0.032 0.036 5.195 48.214 20.909 LGA L 100 L 100 2.093 3 0.044 0.053 3.378 57.381 34.940 LGA E 101 E 101 5.802 4 0.014 0.020 7.643 27.619 13.069 LGA E 102 E 102 4.266 4 0.046 0.047 5.301 49.048 24.709 LGA A 103 A 103 0.677 0 0.084 0.088 1.771 79.405 79.810 LGA K 104 K 104 3.627 4 0.009 0.011 5.070 50.357 25.291 LGA S 105 S 105 2.715 1 0.185 0.200 3.500 67.143 53.095 LGA I 106 I 106 1.410 3 0.261 0.265 1.962 83.810 51.012 LGA G 107 G 107 1.926 0 0.042 0.042 1.926 75.000 75.000 LGA L 108 L 108 0.930 3 0.144 0.192 1.593 85.952 52.083 LGA D 109 D 109 1.660 3 0.137 0.192 1.736 75.000 46.607 LGA D 110 D 110 1.659 3 0.085 0.084 2.104 70.833 44.524 LGA Q 111 Q 111 2.036 4 0.194 0.200 2.765 64.881 36.032 LGA T 112 T 112 1.621 2 0.192 0.202 1.772 79.286 55.714 LGA A 113 A 113 1.438 0 0.043 0.047 1.577 79.286 79.714 LGA I 114 I 114 0.997 3 0.013 0.017 1.145 88.214 55.417 LGA E 115 E 115 0.850 4 0.023 0.026 1.005 90.476 49.259 LGA L 116 L 116 1.143 3 0.017 0.023 1.512 83.690 50.952 LGA L 117 L 117 1.413 3 0.031 0.038 1.735 79.286 49.821 LGA I 118 I 118 1.366 3 0.011 0.010 1.699 79.286 49.821 LGA K 119 K 119 1.199 4 0.054 0.055 1.635 79.286 45.291 LGA R 120 R 120 1.781 6 0.119 0.127 2.824 69.048 31.732 LGA S 121 S 121 2.063 1 0.058 0.059 2.313 66.786 55.317 LGA R 122 R 122 2.112 6 0.179 0.178 3.102 61.071 28.095 LGA N 123 N 123 2.476 3 0.274 0.292 6.606 42.262 27.381 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 39 156 156 100.00 313 194 61.98 39 SUMMARY(RMSD_GDC): 6.706 6.403 6.695 46.877 30.683 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 39 39 4.0 25 2.18 59.615 57.695 1.098 LGA_LOCAL RMSD: 2.177 Number of atoms: 25 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.066 Number of assigned atoms: 39 Std_ASGN_ATOMS RMSD: 6.706 Standard rmsd on all 39 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.164694 * X + 0.252086 * Y + -0.953587 * Z + -12.178852 Y_new = 0.523073 * X + -0.841966 * Y + -0.132239 * Z + -7.320614 Z_new = -0.836224 * X + -0.477017 * Y + -0.270526 * Z + 14.659127 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.265765 0.990361 -2.086689 [DEG: 72.5230 56.7435 -119.5585 ] ZXZ: -1.433000 1.844736 -2.089198 [DEG: -82.1048 105.6956 -119.7022 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS042_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS042_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 39 39 4.0 25 2.18 57.695 6.71 REMARK ---------------------------------------------------------- MOLECULE T0586TS042_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT N/A ATOM 579 N ASP 85 -6.461 -2.886 30.946 1.00 0.00 N ATOM 580 CA ASP 85 -7.482 -1.849 31.012 1.00 0.00 C ATOM 581 C ASP 85 -6.874 -0.499 31.370 1.00 0.00 C ATOM 582 O ASP 85 -7.171 0.514 30.737 1.00 0.00 O ATOM 583 CB ASP 85 -8.565 -2.224 32.027 1.00 0.00 C ATOM 584 CEN ASP 85 -9.493 -2.641 32.066 1.00 0.00 C ATOM 585 H ASP 85 -6.523 -3.678 31.570 1.00 0.00 H ATOM 586 N GLN 86 -6.022 -0.491 32.390 1.00 0.00 N ATOM 587 CA GLN 86 -5.305 0.716 32.781 1.00 0.00 C ATOM 588 C GLN 86 -4.438 1.235 31.641 1.00 0.00 C ATOM 589 O GLN 86 -4.407 2.436 31.369 1.00 0.00 O ATOM 590 CB GLN 86 -4.434 0.448 34.012 1.00 0.00 C ATOM 591 CEN GLN 86 -4.330 0.633 35.744 1.00 0.00 C ATOM 592 H GLN 86 -5.867 -1.345 32.907 1.00 0.00 H ATOM 593 N LEU 87 -3.735 0.324 30.977 1.00 0.00 N ATOM 594 CA LEU 87 -2.865 0.690 29.865 1.00 0.00 C ATOM 595 C LEU 87 -3.658 1.313 28.725 1.00 0.00 C ATOM 596 O LEU 87 -3.285 2.358 28.195 1.00 0.00 O ATOM 597 CB LEU 87 -2.094 -0.541 29.369 1.00 0.00 C ATOM 598 CEN LEU 87 -0.635 -1.004 29.548 1.00 0.00 C ATOM 599 H LEU 87 -3.806 -0.645 31.249 1.00 0.00 H ATOM 600 N LYS 88 -4.756 0.664 28.351 1.00 0.00 N ATOM 601 CA LYS 88 -5.575 1.123 27.236 1.00 0.00 C ATOM 602 C LYS 88 -6.027 2.564 27.442 1.00 0.00 C ATOM 603 O LYS 88 -6.033 3.362 26.505 1.00 0.00 O ATOM 604 CB LYS 88 -6.789 0.212 27.052 1.00 0.00 C ATOM 605 CEN LYS 88 -7.745 -1.333 25.967 1.00 0.00 C ATOM 606 H LYS 88 -5.030 -0.168 28.854 1.00 0.00 H ATOM 607 N LYS 89 -6.407 2.889 28.672 1.00 0.00 N ATOM 608 CA LYS 89 -6.813 4.247 29.015 1.00 0.00 C ATOM 609 C LYS 89 -5.621 5.195 29.015 1.00 0.00 C ATOM 610 O LYS 89 -5.757 6.378 28.703 1.00 0.00 O ATOM 611 CB LYS 89 -7.506 4.272 30.379 1.00 0.00 C ATOM 612 CEN LYS 89 -9.296 4.399 31.497 1.00 0.00 C ATOM 613 H LYS 89 -6.414 2.178 29.389 1.00 0.00 H ATOM 614 N GLU 90 -4.453 4.668 29.368 1.00 0.00 N ATOM 615 CA GLU 90 -3.242 5.477 29.453 1.00 0.00 C ATOM 616 C GLU 90 -2.349 5.261 28.238 1.00 0.00 C ATOM 617 O GLU 90 -1.792 6.211 27.689 1.00 0.00 O ATOM 618 CB GLU 90 -2.473 5.156 30.736 1.00 0.00 C ATOM 619 CEN GLU 90 -2.065 5.532 32.346 1.00 0.00 C ATOM 620 H GLU 90 -4.403 3.682 29.581 1.00 0.00 H ATOM 621 N LEU 91 -2.216 4.005 27.823 1.00 0.00 N ATOM 622 CA LEU 91 -1.163 3.612 26.895 1.00 0.00 C ATOM 623 C LEU 91 -1.699 3.483 25.476 1.00 0.00 C ATOM 624 O LEU 91 -0.959 3.152 24.550 1.00 0.00 O ATOM 625 CB LEU 91 -0.524 2.293 27.347 1.00 0.00 C ATOM 626 CEN LEU 91 0.815 1.961 28.033 1.00 0.00 C ATOM 627 H LEU 91 -2.862 3.305 28.160 1.00 0.00 H ATOM 628 N ALA 92 -2.991 3.746 25.311 1.00 0.00 N ATOM 629 CA ALA 92 -3.624 3.682 23.999 1.00 0.00 C ATOM 630 C ALA 92 -2.925 4.597 23.004 1.00 0.00 C ATOM 631 O ALA 92 -2.690 4.219 21.856 1.00 0.00 O ATOM 632 CB ALA 92 -5.100 4.038 24.105 1.00 0.00 C ATOM 633 CEN ALA 92 -5.100 4.038 24.105 1.00 0.00 C ATOM 634 H ALA 92 -3.549 3.997 26.114 1.00 0.00 H ATOM 635 N ASP 93 -2.592 5.804 23.450 1.00 0.00 N ATOM 636 CA ASP 93 -1.955 6.791 22.587 1.00 0.00 C ATOM 637 C ASP 93 -0.623 6.280 22.053 1.00 0.00 C ATOM 638 O ASP 93 -0.301 6.464 20.879 1.00 0.00 O ATOM 639 CB ASP 93 -1.748 8.109 23.339 1.00 0.00 C ATOM 640 CEN ASP 93 -2.185 9.020 23.459 1.00 0.00 C ATOM 641 H ASP 93 -2.785 6.043 24.412 1.00 0.00 H ATOM 642 N ALA 94 0.149 5.635 22.922 1.00 0.00 N ATOM 643 CA ALA 94 1.488 5.180 22.568 1.00 0.00 C ATOM 644 C ALA 94 1.434 3.926 21.706 1.00 0.00 C ATOM 645 O ALA 94 2.180 3.796 20.736 1.00 0.00 O ATOM 646 CB ALA 94 2.311 4.931 23.824 1.00 0.00 C ATOM 647 CEN ALA 94 2.311 4.930 23.822 1.00 0.00 C ATOM 648 H ALA 94 -0.203 5.455 23.853 1.00 0.00 H ATOM 649 N ILE 95 0.547 3.005 22.066 1.00 0.00 N ATOM 650 CA ILE 95 0.500 1.696 21.426 1.00 0.00 C ATOM 651 C ILE 95 -0.617 1.628 20.392 1.00 0.00 C ATOM 652 O ILE 95 -0.809 0.603 19.737 1.00 0.00 O ATOM 653 CB ILE 95 0.302 0.569 22.456 1.00 0.00 C ATOM 654 CEN ILE 95 0.806 -0.105 23.149 1.00 0.00 C ATOM 655 H ILE 95 -0.112 3.216 22.802 1.00 0.00 H ATOM 656 N THR 96 -1.352 2.725 20.250 1.00 0.00 N ATOM 657 CA THR 96 -2.500 2.767 19.351 1.00 0.00 C ATOM 658 C THR 96 -2.115 2.321 17.946 1.00 0.00 C ATOM 659 O THR 96 -2.712 1.397 17.393 1.00 0.00 O ATOM 660 CB THR 96 -3.111 4.179 19.281 1.00 0.00 C ATOM 661 CEN THR 96 -3.363 4.644 19.531 1.00 0.00 C ATOM 662 H THR 96 -1.111 3.551 20.779 1.00 0.00 H ATOM 663 N GLU 97 -1.115 2.982 17.374 1.00 0.00 N ATOM 664 CA GLU 97 -0.716 2.724 15.996 1.00 0.00 C ATOM 665 C GLU 97 -0.406 1.248 15.780 1.00 0.00 C ATOM 666 O GLU 97 -0.952 0.615 14.877 1.00 0.00 O ATOM 667 CB GLU 97 0.499 3.576 15.622 1.00 0.00 C ATOM 668 CEN GLU 97 1.159 4.957 14.874 1.00 0.00 C ATOM 669 H GLU 97 -0.619 3.682 17.907 1.00 0.00 H ATOM 670 N ARG 98 0.474 0.704 16.615 1.00 0.00 N ATOM 671 CA ARG 98 0.922 -0.674 16.465 1.00 0.00 C ATOM 672 C ARG 98 -0.208 -1.655 16.752 1.00 0.00 C ATOM 673 O ARG 98 -0.360 -2.661 16.060 1.00 0.00 O ATOM 674 CB ARG 98 2.149 -0.975 17.314 1.00 0.00 C ATOM 675 CEN ARG 98 4.519 -1.294 17.971 1.00 0.00 C ATOM 676 H ARG 98 0.842 1.262 17.372 1.00 0.00 H ATOM 677 N PHE 99 -0.998 -1.355 17.778 1.00 0.00 N ATOM 678 CA PHE 99 -2.075 -2.243 18.199 1.00 0.00 C ATOM 679 C PHE 99 -3.155 -2.347 17.129 1.00 0.00 C ATOM 680 O PHE 99 -3.631 -3.439 16.819 1.00 0.00 O ATOM 681 CB PHE 99 -2.685 -1.755 19.515 1.00 0.00 C ATOM 682 CEN PHE 99 -2.571 -2.075 21.068 1.00 0.00 C ATOM 683 H PHE 99 -0.850 -0.490 18.276 1.00 0.00 H ATOM 684 N LEU 100 -3.537 -1.205 16.568 1.00 0.00 N ATOM 685 CA LEU 100 -4.601 -1.159 15.573 1.00 0.00 C ATOM 686 C LEU 100 -4.234 -1.969 14.336 1.00 0.00 C ATOM 687 O LEU 100 -5.059 -2.709 13.799 1.00 0.00 O ATOM 688 CB LEU 100 -4.905 0.295 15.188 1.00 0.00 C ATOM 689 CEN LEU 100 -6.053 1.254 15.553 1.00 0.00 C ATOM 690 H LEU 100 -3.077 -0.347 16.837 1.00 0.00 H ATOM 691 N GLU 101 -2.992 -1.824 13.887 1.00 0.00 N ATOM 692 CA GLU 101 -2.518 -2.532 12.704 1.00 0.00 C ATOM 693 C GLU 101 -2.673 -4.039 12.864 1.00 0.00 C ATOM 694 O GLU 101 -3.118 -4.728 11.946 1.00 0.00 O ATOM 695 CB GLU 101 -1.056 -2.182 12.421 1.00 0.00 C ATOM 696 CEN GLU 101 0.108 -1.284 11.558 1.00 0.00 C ATOM 697 H GLU 101 -2.360 -1.207 14.377 1.00 0.00 H ATOM 698 N GLU 102 -2.305 -4.545 14.036 1.00 0.00 N ATOM 699 CA GLU 102 -2.370 -5.976 14.307 1.00 0.00 C ATOM 700 C GLU 102 -3.810 -6.435 14.497 1.00 0.00 C ATOM 701 O GLU 102 -4.231 -7.442 13.928 1.00 0.00 O ATOM 702 CB GLU 102 -1.539 -6.326 15.544 1.00 0.00 C ATOM 703 CEN GLU 102 -0.097 -6.915 16.235 1.00 0.00 C ATOM 704 H GLU 102 -1.970 -3.922 14.758 1.00 0.00 H ATOM 705 N ALA 103 -4.562 -5.692 15.302 1.00 0.00 N ATOM 706 CA ALA 103 -5.930 -6.068 15.637 1.00 0.00 C ATOM 707 C ALA 103 -6.819 -6.069 14.400 1.00 0.00 C ATOM 708 O ALA 103 -7.736 -6.883 14.284 1.00 0.00 O ATOM 709 CB ALA 103 -6.492 -5.133 16.698 1.00 0.00 C ATOM 710 CEN ALA 103 -6.491 -5.133 16.697 1.00 0.00 C ATOM 711 H ALA 103 -4.175 -4.844 15.691 1.00 0.00 H ATOM 712 N LYS 104 -6.544 -5.153 13.479 1.00 0.00 N ATOM 713 CA LYS 104 -7.357 -5.006 12.277 1.00 0.00 C ATOM 714 C LYS 104 -7.337 -6.279 11.440 1.00 0.00 C ATOM 715 O LYS 104 -8.343 -6.652 10.837 1.00 0.00 O ATOM 716 CB LYS 104 -6.870 -3.821 11.442 1.00 0.00 C ATOM 717 CEN LYS 104 -7.145 -1.822 10.804 1.00 0.00 C ATOM 718 H LYS 104 -5.750 -4.543 13.613 1.00 0.00 H ATOM 719 N SER 105 -6.186 -6.942 11.408 1.00 0.00 N ATOM 720 CA SER 105 -6.034 -8.174 10.642 1.00 0.00 C ATOM 721 C SER 105 -6.144 -9.398 11.542 1.00 0.00 C ATOM 722 O SER 105 -6.970 -10.281 11.308 1.00 0.00 O ATOM 723 CB SER 105 -4.705 -8.174 9.911 1.00 0.00 C ATOM 724 CEN SER 105 -4.178 -8.078 9.815 1.00 0.00 C ATOM 725 H SER 105 -5.397 -6.584 11.926 1.00 0.00 H ATOM 726 N ILE 106 -5.306 -9.447 12.572 1.00 0.00 N ATOM 727 CA ILE 106 -5.236 -10.610 13.449 1.00 0.00 C ATOM 728 C ILE 106 -6.539 -10.801 14.216 1.00 0.00 C ATOM 729 O ILE 106 -6.998 -11.928 14.406 1.00 0.00 O ATOM 730 CB ILE 106 -4.074 -10.491 14.451 1.00 0.00 C ATOM 731 CEN ILE 106 -3.009 -10.666 14.608 1.00 0.00 C ATOM 732 H ILE 106 -4.703 -8.657 12.753 1.00 0.00 H ATOM 733 N GLY 107 -7.130 -9.695 14.653 1.00 0.00 N ATOM 734 CA GLY 107 -8.369 -9.741 15.419 1.00 0.00 C ATOM 735 C GLY 107 -8.121 -10.227 16.841 1.00 0.00 C ATOM 736 O GLY 107 -9.009 -10.794 17.477 1.00 0.00 O ATOM 737 CEN GLY 107 -8.371 -9.741 15.419 1.00 0.00 C ATOM 738 H GLY 107 -6.710 -8.799 14.449 1.00 0.00 H ATOM 739 N LEU 108 -6.909 -10.001 17.334 1.00 0.00 N ATOM 740 CA LEU 108 -6.554 -10.379 18.697 1.00 0.00 C ATOM 741 C LEU 108 -7.356 -9.582 19.717 1.00 0.00 C ATOM 742 O LEU 108 -7.698 -8.422 19.483 1.00 0.00 O ATOM 743 CB LEU 108 -5.050 -10.179 18.927 1.00 0.00 C ATOM 744 CEN LEU 108 -3.866 -11.161 19.010 1.00 0.00 C ATOM 745 H LEU 108 -6.215 -9.555 16.751 1.00 0.00 H ATOM 746 N ASP 109 -7.653 -10.209 20.849 1.00 0.00 N ATOM 747 CA ASP 109 -8.373 -9.543 21.929 1.00 0.00 C ATOM 748 C ASP 109 -7.819 -8.147 22.181 1.00 0.00 C ATOM 749 O ASP 109 -6.619 -7.976 22.399 1.00 0.00 O ATOM 750 CB ASP 109 -8.306 -10.375 23.212 1.00 0.00 C ATOM 751 CEN ASP 109 -8.858 -11.049 23.740 1.00 0.00 C ATOM 752 H ASP 109 -7.375 -11.174 20.965 1.00 0.00 H ATOM 753 N ASP 110 -8.698 -7.152 22.148 1.00 0.00 N ATOM 754 CA ASP 110 -8.292 -5.764 22.335 1.00 0.00 C ATOM 755 C ASP 110 -7.660 -5.555 23.704 1.00 0.00 C ATOM 756 O ASP 110 -6.846 -4.649 23.892 1.00 0.00 O ATOM 757 CB ASP 110 -9.489 -4.827 22.160 1.00 0.00 C ATOM 758 CEN ASP 110 -9.923 -4.231 21.457 1.00 0.00 C ATOM 759 H ASP 110 -9.674 -7.362 21.991 1.00 0.00 H ATOM 760 N GLN 111 -8.037 -6.397 24.660 1.00 0.00 N ATOM 761 CA GLN 111 -7.533 -6.285 26.023 1.00 0.00 C ATOM 762 C GLN 111 -6.104 -6.802 26.127 1.00 0.00 C ATOM 763 O GLN 111 -5.449 -6.644 27.157 1.00 0.00 O ATOM 764 CB GLN 111 -8.433 -7.055 26.994 1.00 0.00 C ATOM 765 CEN GLN 111 -9.714 -6.901 28.170 1.00 0.00 C ATOM 766 H GLN 111 -8.691 -7.134 24.437 1.00 0.00 H ATOM 767 N THR 112 -5.625 -7.422 25.054 1.00 0.00 N ATOM 768 CA THR 112 -4.302 -8.034 25.049 1.00 0.00 C ATOM 769 C THR 112 -3.403 -7.393 23.999 1.00 0.00 C ATOM 770 O THR 112 -2.216 -7.706 23.909 1.00 0.00 O ATOM 771 CB THR 112 -4.381 -9.549 24.786 1.00 0.00 C ATOM 772 CEN THR 112 -4.565 -10.085 24.925 1.00 0.00 C ATOM 773 H THR 112 -6.193 -7.470 24.220 1.00 0.00 H ATOM 774 N ALA 113 -3.976 -6.493 23.207 1.00 0.00 N ATOM 775 CA ALA 113 -3.250 -5.868 22.107 1.00 0.00 C ATOM 776 C ALA 113 -2.334 -4.761 22.612 1.00 0.00 C ATOM 777 O ALA 113 -1.227 -4.578 22.105 1.00 0.00 O ATOM 778 CB ALA 113 -4.223 -5.324 21.071 1.00 0.00 C ATOM 779 CEN ALA 113 -4.222 -5.324 21.072 1.00 0.00 C ATOM 780 H ALA 113 -4.939 -6.237 23.369 1.00 0.00 H ATOM 781 N ILE 114 -2.801 -4.024 23.614 1.00 0.00 N ATOM 782 CA ILE 114 -2.012 -2.952 24.209 1.00 0.00 C ATOM 783 C ILE 114 -0.746 -3.495 24.858 1.00 0.00 C ATOM 784 O ILE 114 0.341 -2.946 24.677 1.00 0.00 O ATOM 785 CB ILE 114 -2.822 -2.170 25.258 1.00 0.00 C ATOM 786 CEN ILE 114 -3.526 -1.352 25.415 1.00 0.00 C ATOM 787 H ILE 114 -3.726 -4.211 23.972 1.00 0.00 H ATOM 788 N GLU 115 -0.893 -4.576 25.617 1.00 0.00 N ATOM 789 CA GLU 115 0.242 -5.208 26.279 1.00 0.00 C ATOM 790 C GLU 115 1.230 -5.767 25.264 1.00 0.00 C ATOM 791 O GLU 115 2.441 -5.583 25.395 1.00 0.00 O ATOM 792 CB GLU 115 -0.236 -6.320 27.216 1.00 0.00 C ATOM 793 CEN GLU 115 -0.628 -6.864 28.783 1.00 0.00 C ATOM 794 H GLU 115 -1.816 -4.970 25.738 1.00 0.00 H ATOM 795 N LEU 116 0.708 -6.452 24.252 1.00 0.00 N ATOM 796 CA LEU 116 1.545 -7.062 23.227 1.00 0.00 C ATOM 797 C LEU 116 2.324 -6.007 22.451 1.00 0.00 C ATOM 798 O LEU 116 3.514 -6.170 22.185 1.00 0.00 O ATOM 799 CB LEU 116 0.688 -7.901 22.272 1.00 0.00 C ATOM 800 CEN LEU 116 0.474 -9.420 22.120 1.00 0.00 C ATOM 801 H LEU 116 -0.295 -6.551 24.191 1.00 0.00 H ATOM 802 N LEU 117 1.643 -4.924 22.089 1.00 0.00 N ATOM 803 CA LEU 117 2.268 -3.843 21.337 1.00 0.00 C ATOM 804 C LEU 117 3.375 -3.179 22.144 1.00 0.00 C ATOM 805 O LEU 117 4.435 -2.851 21.610 1.00 0.00 O ATOM 806 CB LEU 117 1.214 -2.807 20.924 1.00 0.00 C ATOM 807 CEN LEU 117 0.519 -2.500 19.584 1.00 0.00 C ATOM 808 H LEU 117 0.668 -4.849 22.341 1.00 0.00 H ATOM 809 N ILE 118 3.125 -2.983 23.434 1.00 0.00 N ATOM 810 CA ILE 118 4.103 -2.360 24.318 1.00 0.00 C ATOM 811 C ILE 118 5.373 -3.194 24.410 1.00 0.00 C ATOM 812 O ILE 118 6.481 -2.658 24.413 1.00 0.00 O ATOM 813 CB ILE 118 3.533 -2.152 25.734 1.00 0.00 C ATOM 814 CEN ILE 118 2.953 -1.486 26.374 1.00 0.00 C ATOM 815 H ILE 118 2.235 -3.274 23.812 1.00 0.00 H ATOM 816 N LYS 119 5.207 -4.511 24.484 1.00 0.00 N ATOM 817 CA LYS 119 6.340 -5.422 24.589 1.00 0.00 C ATOM 818 C LYS 119 7.192 -5.387 23.328 1.00 0.00 C ATOM 819 O LYS 119 8.415 -5.518 23.388 1.00 0.00 O ATOM 820 CB LYS 119 5.858 -6.847 24.859 1.00 0.00 C ATOM 821 CEN LYS 119 5.587 -8.438 26.228 1.00 0.00 C ATOM 822 H LYS 119 4.270 -4.890 24.469 1.00 0.00 H ATOM 823 N ARG 120 6.540 -5.209 22.183 1.00 0.00 N ATOM 824 CA ARG 120 7.236 -5.171 20.903 1.00 0.00 C ATOM 825 C ARG 120 7.997 -3.863 20.729 1.00 0.00 C ATOM 826 O ARG 120 8.914 -3.772 19.911 1.00 0.00 O ATOM 827 CB ARG 120 6.298 -5.430 19.732 1.00 0.00 C ATOM 828 CEN ARG 120 5.071 -6.619 17.935 1.00 0.00 C ATOM 829 H ARG 120 5.537 -5.097 22.201 1.00 0.00 H ATOM 830 N SER 121 7.613 -2.853 21.500 1.00 0.00 N ATOM 831 CA SER 121 8.268 -1.552 21.441 1.00 0.00 C ATOM 832 C SER 121 9.486 -1.505 22.353 1.00 0.00 C ATOM 833 O SER 121 10.399 -0.705 22.146 1.00 0.00 O ATOM 834 CB SER 121 7.287 -0.457 21.814 1.00 0.00 C ATOM 835 CEN SER 121 6.874 -0.209 22.067 1.00 0.00 C ATOM 836 H SER 121 6.848 -2.990 22.145 1.00 0.00 H ATOM 837 N ARG 122 9.496 -2.368 23.364 1.00 0.00 N ATOM 838 CA ARG 122 10.593 -2.413 24.323 1.00 0.00 C ATOM 839 C ARG 122 11.912 -2.744 23.638 1.00 0.00 C ATOM 840 O ARG 122 12.962 -2.210 23.998 1.00 0.00 O ATOM 841 CB ARG 122 10.309 -3.364 25.476 1.00 0.00 C ATOM 842 CEN ARG 122 9.606 -4.201 27.702 1.00 0.00 C ATOM 843 H ARG 122 8.724 -3.010 23.469 1.00 0.00 H ATOM 844 N ASN 123 11.852 -3.627 22.647 1.00 0.00 N ATOM 845 CA ASN 123 13.044 -4.039 21.915 1.00 0.00 C ATOM 846 C ASN 123 13.638 -2.875 21.133 1.00 0.00 C ATOM 847 O ASN 123 14.849 -2.658 21.148 1.00 0.00 O ATOM 848 CB ASN 123 12.750 -5.201 20.984 1.00 0.00 C ATOM 849 CEN ASN 123 12.786 -6.250 21.006 1.00 0.00 C ATOM 850 H ASN 123 10.958 -4.024 22.395 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 194 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 24.94 80.3 76 100.0 76 ARMSMC SECONDARY STRUCTURE . . 17.64 85.9 64 100.0 64 ARMSMC SURFACE . . . . . . . . 25.46 79.2 72 100.0 72 ARMSMC BURIED . . . . . . . . 12.11 100.0 4 100.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 34 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 24 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.71 (Number of atoms: 39) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.71 39 100.0 39 CRMSCA CRN = ALL/NP . . . . . 0.1720 CRMSCA SECONDARY STRUCTURE . . 6.49 32 100.0 32 CRMSCA SURFACE . . . . . . . . 6.82 37 100.0 37 CRMSCA BURIED . . . . . . . . 3.98 2 100.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.70 194 100.0 194 CRMSMC SECONDARY STRUCTURE . . 6.48 160 100.0 160 CRMSMC SURFACE . . . . . . . . 6.81 184 100.0 184 CRMSMC BURIED . . . . . . . . 4.09 10 100.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.75 38 24.2 157 CRMSSC RELIABLE SIDE CHAINS . 7.75 38 27.3 139 CRMSSC SECONDARY STRUCTURE . . 7.63 32 24.6 130 CRMSSC SURFACE . . . . . . . . 7.91 36 23.2 155 CRMSSC BURIED . . . . . . . . 3.77 2 100.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.70 194 62.0 313 CRMSALL SECONDARY STRUCTURE . . 6.48 160 62.0 258 CRMSALL SURFACE . . . . . . . . 6.81 184 60.7 303 CRMSALL BURIED . . . . . . . . 4.09 10 100.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.078 1.000 0.500 39 100.0 39 ERRCA SECONDARY STRUCTURE . . 5.947 1.000 0.500 32 100.0 32 ERRCA SURFACE . . . . . . . . 6.210 1.000 0.500 37 100.0 37 ERRCA BURIED . . . . . . . . 3.623 1.000 0.500 2 100.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.051 1.000 0.500 194 100.0 194 ERRMC SECONDARY STRUCTURE . . 5.889 1.000 0.500 160 100.0 160 ERRMC SURFACE . . . . . . . . 6.178 1.000 0.500 184 100.0 184 ERRMC BURIED . . . . . . . . 3.721 1.000 0.500 10 100.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.042 1.000 0.500 38 24.2 157 ERRSC RELIABLE SIDE CHAINS . 7.042 1.000 0.500 38 27.3 139 ERRSC SECONDARY STRUCTURE . . 6.982 1.000 0.500 32 24.6 130 ERRSC SURFACE . . . . . . . . 7.229 1.000 0.500 36 23.2 155 ERRSC BURIED . . . . . . . . 3.672 1.000 0.500 2 100.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.051 1.000 0.500 194 62.0 313 ERRALL SECONDARY STRUCTURE . . 5.889 1.000 0.500 160 62.0 258 ERRALL SURFACE . . . . . . . . 6.178 1.000 0.500 184 60.7 303 ERRALL BURIED . . . . . . . . 3.721 1.000 0.500 10 100.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 3 14 35 39 39 DISTCA CA (P) 0.00 5.13 7.69 35.90 89.74 39 DISTCA CA (RMS) 0.00 1.81 2.06 3.77 5.63 DISTCA ALL (N) 3 12 19 75 177 194 313 DISTALL ALL (P) 0.96 3.83 6.07 23.96 56.55 313 DISTALL ALL (RMS) 0.51 1.35 2.02 3.82 5.73 DISTALL END of the results output