####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 36 ( 289), selected 36 , name T0586TS026_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 36 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS026_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 36 85 - 120 2.24 2.24 LCS_AVERAGE: 92.31 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 31 89 - 119 1.99 2.32 LONGEST_CONTINUOUS_SEGMENT: 31 90 - 120 1.92 2.39 LCS_AVERAGE: 78.56 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 85 - 107 0.92 7.56 LCS_AVERAGE: 55.34 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 36 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 23 27 36 12 16 21 23 24 25 28 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT Q 86 Q 86 23 28 36 12 19 21 23 28 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT L 87 L 87 23 28 36 12 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT K 88 K 88 23 28 36 12 18 21 23 24 25 30 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT K 89 K 89 23 31 36 12 18 21 23 24 31 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT E 90 E 90 23 31 36 12 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT L 91 L 91 23 31 36 12 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT A 92 A 92 23 31 36 12 19 21 23 26 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT D 93 D 93 23 31 36 12 19 21 23 28 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT A 94 A 94 23 31 36 12 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT I 95 I 95 23 31 36 12 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT T 96 T 96 23 31 36 11 19 21 23 28 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT E 97 E 97 23 31 36 11 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT R 98 R 98 23 31 36 11 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT F 99 F 99 23 31 36 12 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT L 100 L 100 23 31 36 11 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT E 101 E 101 23 31 36 11 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT E 102 E 102 23 31 36 11 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT A 103 A 103 23 31 36 11 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT K 104 K 104 23 31 36 11 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT S 105 S 105 23 31 36 11 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT I 106 I 106 23 31 36 4 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT G 107 G 107 23 31 36 8 15 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT L 108 L 108 20 31 36 10 15 18 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT D 109 D 109 19 31 36 10 15 18 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT D 110 D 110 19 31 36 10 15 18 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT Q 111 Q 111 19 31 36 10 15 18 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT T 112 T 112 19 31 36 10 15 18 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT A 113 A 113 19 31 36 10 15 18 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT I 114 I 114 19 31 36 10 15 18 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT E 115 E 115 19 31 36 10 15 18 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT L 116 L 116 19 31 36 10 15 18 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT L 117 L 117 19 31 36 7 15 17 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT I 118 I 118 19 31 36 10 15 18 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT K 119 K 119 19 31 36 8 15 18 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT R 120 R 120 19 31 36 3 15 17 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 LCS_AVERAGE LCS_A: 75.40 ( 55.34 78.56 92.31 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 19 21 23 29 33 34 35 36 36 36 36 36 36 36 36 36 36 36 36 GDT PERCENT_AT 30.77 48.72 53.85 58.97 74.36 84.62 87.18 89.74 92.31 92.31 92.31 92.31 92.31 92.31 92.31 92.31 92.31 92.31 92.31 92.31 GDT RMS_LOCAL 0.34 0.64 0.76 0.92 1.65 1.95 2.04 2.14 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 GDT RMS_ALL_AT 9.31 7.01 7.50 7.56 2.68 2.35 2.30 2.26 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 # Checking swapping # possible swapping detected: D 85 D 85 # possible swapping detected: E 90 E 90 # possible swapping detected: D 93 D 93 # possible swapping detected: E 97 E 97 # possible swapping detected: D 109 D 109 # possible swapping detected: E 115 E 115 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 4.798 0 0.039 0.178 8.527 37.262 23.155 LGA Q 86 Q 86 2.083 0 0.054 0.253 6.908 73.214 48.783 LGA L 87 L 87 2.544 0 0.048 1.413 8.801 65.119 40.476 LGA K 88 K 88 4.178 0 0.030 1.334 13.213 45.119 24.074 LGA K 89 K 89 3.577 0 0.032 0.812 7.596 55.595 34.074 LGA E 90 E 90 2.038 0 0.046 0.663 4.028 75.119 61.534 LGA L 91 L 91 2.506 0 0.037 0.104 5.906 67.024 48.214 LGA A 92 A 92 3.056 0 0.034 0.050 4.284 59.167 54.762 LGA D 93 D 93 2.851 0 0.054 1.132 5.488 60.952 49.226 LGA A 94 A 94 1.988 0 0.036 0.044 2.822 77.143 73.143 LGA I 95 I 95 1.840 0 0.037 0.917 5.389 79.405 60.893 LGA T 96 T 96 2.421 0 0.057 1.085 5.263 66.786 57.211 LGA E 97 E 97 2.336 0 0.052 0.489 6.860 70.833 48.201 LGA R 98 R 98 1.288 0 0.049 1.335 7.430 83.690 55.325 LGA F 99 F 99 1.792 0 0.029 0.196 6.547 77.262 47.100 LGA L 100 L 100 2.230 0 0.057 0.113 4.373 70.833 57.262 LGA E 101 E 101 1.833 0 0.026 0.829 4.051 77.143 67.249 LGA E 102 E 102 1.328 0 0.026 0.243 2.851 83.690 73.228 LGA A 103 A 103 1.225 0 0.028 0.046 1.973 88.214 85.143 LGA K 104 K 104 1.586 0 0.040 0.156 4.827 79.286 61.217 LGA S 105 S 105 2.036 0 0.086 0.542 3.959 70.952 65.317 LGA I 106 I 106 1.638 0 0.242 1.580 5.101 71.071 65.238 LGA G 107 G 107 0.881 0 0.137 0.137 1.030 88.214 88.214 LGA L 108 L 108 1.101 0 0.090 1.185 2.451 83.690 80.655 LGA D 109 D 109 1.901 0 0.028 1.265 5.359 75.000 62.262 LGA D 110 D 110 2.122 0 0.045 0.954 3.726 64.762 58.333 LGA Q 111 Q 111 2.747 0 0.027 1.023 6.919 60.952 44.656 LGA T 112 T 112 1.318 0 0.029 1.022 3.718 86.190 76.258 LGA A 113 A 113 0.858 0 0.034 0.047 1.488 85.952 85.048 LGA I 114 I 114 2.321 0 0.034 1.577 6.737 66.786 50.298 LGA E 115 E 115 1.616 0 0.054 0.964 2.534 81.667 78.942 LGA L 116 L 116 0.705 0 0.027 0.925 3.027 86.190 78.810 LGA L 117 L 117 2.665 0 0.024 1.390 6.755 61.071 51.190 LGA I 118 I 118 2.171 0 0.044 1.278 3.767 70.952 61.488 LGA K 119 K 119 1.009 0 0.609 1.257 4.194 68.452 67.672 LGA R 120 R 120 2.370 0 0.099 1.493 13.466 67.262 30.216 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 36 144 144 100.00 288 288 100.00 39 SUMMARY(RMSD_GDC): 2.239 2.012 3.774 66.206 54.227 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 36 39 4.0 35 2.14 72.436 78.142 1.562 LGA_LOCAL RMSD: 2.141 Number of atoms: 35 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.258 Number of assigned atoms: 36 Std_ASGN_ATOMS RMSD: 2.239 Standard rmsd on all 36 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.859702 * X + -0.510779 * Y + 0.004217 * Z + 13.593211 Y_new = -0.031154 * X + -0.060673 * Y + -0.997671 * Z + 37.239689 Z_new = 0.509845 * X + 0.857569 * Y + -0.068073 * Z + -54.368488 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.036222 -0.535005 1.650010 [DEG: -2.0754 -30.6535 94.5386 ] ZXZ: 0.004227 1.638922 0.536383 [DEG: 0.2422 93.9033 30.7325 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS026_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS026_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 36 39 4.0 35 2.14 78.142 2.24 REMARK ---------------------------------------------------------- MOLECULE T0586TS026_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT 3BY6_A ATOM 641 N ASP 85 0.967 21.368 11.682 1.00 31.00 N ATOM 642 CA ASP 85 1.823 20.241 11.928 1.00 31.00 C ATOM 643 CB ASP 85 3.240 20.645 12.370 1.00 31.00 C ATOM 644 CG ASP 85 3.948 21.273 11.178 1.00 31.00 C ATOM 645 OD1 ASP 85 3.311 21.372 10.095 1.00 31.00 O ATOM 646 OD2 ASP 85 5.138 21.656 11.332 1.00 31.00 O ATOM 647 C ASP 85 1.240 19.402 13.021 1.00 31.00 C ATOM 648 O ASP 85 1.275 18.174 12.952 1.00 31.00 O ATOM 649 N GLN 86 0.675 20.043 14.062 1.00101.47 N ATOM 650 CA GLN 86 0.142 19.316 15.179 1.00101.47 C ATOM 651 CB GLN 86 -0.397 20.233 16.290 1.00101.47 C ATOM 652 CG GLN 86 -0.965 19.468 17.487 1.00101.47 C ATOM 653 CD GLN 86 0.198 18.828 18.236 1.00101.47 C ATOM 654 OE1 GLN 86 1.292 19.388 18.302 1.00101.47 O ATOM 655 NE2 GLN 86 -0.041 17.622 18.817 1.00101.47 N ATOM 656 C GLN 86 -0.995 18.474 14.697 1.00101.47 C ATOM 657 O GLN 86 -1.149 17.328 15.116 1.00101.47 O ATOM 658 N LEU 87 -1.820 19.026 13.790 1.00 77.44 N ATOM 659 CA LEU 87 -2.944 18.303 13.272 1.00 77.44 C ATOM 660 CB LEU 87 -3.776 19.141 12.285 1.00 77.44 C ATOM 661 CG LEU 87 -4.397 20.397 12.924 1.00 77.44 C ATOM 662 CD1 LEU 87 -5.229 21.193 11.903 1.00 77.44 C ATOM 663 CD2 LEU 87 -5.187 20.048 14.198 1.00 77.44 C ATOM 664 C LEU 87 -2.421 17.114 12.528 1.00 77.44 C ATOM 665 O LEU 87 -3.011 16.037 12.563 1.00 77.44 O ATOM 666 N LYS 88 -1.296 17.281 11.815 1.00130.94 N ATOM 667 CA LYS 88 -0.743 16.188 11.070 1.00130.94 C ATOM 668 CB LYS 88 0.540 16.568 10.310 1.00130.94 C ATOM 669 CG LYS 88 1.207 15.382 9.605 1.00130.94 C ATOM 670 CD LYS 88 0.380 14.771 8.471 1.00130.94 C ATOM 671 CE LYS 88 -0.786 13.911 8.957 1.00130.94 C ATOM 672 NZ LYS 88 -1.490 13.316 7.799 1.00130.94 N ATOM 673 C LYS 88 -0.368 15.087 12.010 1.00130.94 C ATOM 674 O LYS 88 -0.667 13.921 11.761 1.00130.94 O ATOM 675 N LYS 89 0.279 15.437 13.136 1.00 93.15 N ATOM 676 CA LYS 89 0.743 14.440 14.059 1.00 93.15 C ATOM 677 CB LYS 89 1.481 15.028 15.271 1.00 93.15 C ATOM 678 CG LYS 89 1.976 13.955 16.243 1.00 93.15 C ATOM 679 CD LYS 89 2.900 14.487 17.338 1.00 93.15 C ATOM 680 CE LYS 89 2.147 15.129 18.506 1.00 93.15 C ATOM 681 NZ LYS 89 3.098 15.549 19.560 1.00 93.15 N ATOM 682 C LYS 89 -0.427 13.682 14.597 1.00 93.15 C ATOM 683 O LYS 89 -0.360 12.465 14.763 1.00 93.15 O ATOM 684 N GLU 90 -1.539 14.383 14.882 1.00 79.09 N ATOM 685 CA GLU 90 -2.667 13.711 15.456 1.00 79.09 C ATOM 686 CB GLU 90 -3.814 14.652 15.881 1.00 79.09 C ATOM 687 CG GLU 90 -4.526 15.370 14.738 1.00 79.09 C ATOM 688 CD GLU 90 -5.494 16.371 15.351 1.00 79.09 C ATOM 689 OE1 GLU 90 -5.139 16.967 16.403 1.00 79.09 O ATOM 690 OE2 GLU 90 -6.598 16.558 14.774 1.00 79.09 O ATOM 691 C GLU 90 -3.174 12.719 14.463 1.00 79.09 C ATOM 692 O GLU 90 -3.639 11.642 14.833 1.00 79.09 O ATOM 693 N LEU 91 -3.091 13.060 13.164 1.00 35.36 N ATOM 694 CA LEU 91 -3.540 12.161 12.142 1.00 35.36 C ATOM 695 CB LEU 91 -3.365 12.744 10.728 1.00 35.36 C ATOM 696 CG LEU 91 -4.194 14.019 10.493 1.00 35.36 C ATOM 697 CD1 LEU 91 -3.994 14.565 9.071 1.00 35.36 C ATOM 698 CD2 LEU 91 -5.673 13.793 10.847 1.00 35.36 C ATOM 699 C LEU 91 -2.700 10.926 12.243 1.00 35.36 C ATOM 700 O LEU 91 -3.202 9.815 12.094 1.00 35.36 O ATOM 701 N ALA 92 -1.390 11.099 12.502 1.00 27.56 N ATOM 702 CA ALA 92 -0.460 10.011 12.638 1.00 27.56 C ATOM 703 CB ALA 92 0.986 10.486 12.863 1.00 27.56 C ATOM 704 C ALA 92 -0.848 9.184 13.827 1.00 27.56 C ATOM 705 O ALA 92 -0.772 7.959 13.804 1.00 27.56 O ATOM 706 N ASP 93 -1.278 9.835 14.920 1.00 69.48 N ATOM 707 CA ASP 93 -1.654 9.091 16.085 1.00 69.48 C ATOM 708 CB ASP 93 -2.095 10.004 17.245 1.00 69.48 C ATOM 709 CG ASP 93 -2.228 9.171 18.512 1.00 69.48 C ATOM 710 OD1 ASP 93 -2.857 8.082 18.449 1.00 69.48 O ATOM 711 OD2 ASP 93 -1.710 9.625 19.568 1.00 69.48 O ATOM 712 C ASP 93 -2.813 8.238 15.690 1.00 69.48 C ATOM 713 O ASP 93 -2.939 7.091 16.115 1.00 69.48 O ATOM 714 N ALA 94 -3.684 8.792 14.829 1.00 29.19 N ATOM 715 CA ALA 94 -4.847 8.095 14.372 1.00 29.19 C ATOM 716 CB ALA 94 -5.709 8.931 13.411 1.00 29.19 C ATOM 717 C ALA 94 -4.408 6.866 13.637 1.00 29.19 C ATOM 718 O ALA 94 -5.042 5.819 13.758 1.00 29.19 O ATOM 719 N ILE 95 -3.312 6.953 12.852 1.00 79.99 N ATOM 720 CA ILE 95 -2.882 5.809 12.097 1.00 79.99 C ATOM 721 CB ILE 95 -1.729 6.043 11.153 1.00 79.99 C ATOM 722 CG2 ILE 95 -0.405 6.011 11.931 1.00 79.99 C ATOM 723 CG1 ILE 95 -1.749 4.972 10.052 1.00 79.99 C ATOM 724 CD1 ILE 95 -0.809 5.284 8.887 1.00 79.99 C ATOM 725 C ILE 95 -2.490 4.734 13.060 1.00 79.99 C ATOM 726 O ILE 95 -2.755 3.557 12.823 1.00 79.99 O ATOM 727 N THR 96 -1.850 5.109 14.184 1.00 30.92 N ATOM 728 CA THR 96 -1.438 4.126 15.145 1.00 30.92 C ATOM 729 CB THR 96 -0.814 4.731 16.366 1.00 30.92 C ATOM 730 OG1 THR 96 0.326 5.496 16.006 1.00 30.92 O ATOM 731 CG2 THR 96 -0.414 3.596 17.323 1.00 30.92 C ATOM 732 C THR 96 -2.669 3.406 15.581 1.00 30.92 C ATOM 733 O THR 96 -2.673 2.184 15.721 1.00 30.92 O ATOM 734 N GLU 97 -3.759 4.159 15.796 1.00105.83 N ATOM 735 CA GLU 97 -4.992 3.569 16.222 1.00105.83 C ATOM 736 CB GLU 97 -6.089 4.612 16.483 1.00105.83 C ATOM 737 CG GLU 97 -7.407 3.998 16.956 1.00105.83 C ATOM 738 CD GLU 97 -7.169 3.387 18.331 1.00105.83 C ATOM 739 OE1 GLU 97 -6.793 2.185 18.389 1.00105.83 O ATOM 740 OE2 GLU 97 -7.353 4.116 19.341 1.00105.83 O ATOM 741 C GLU 97 -5.481 2.647 15.143 1.00105.83 C ATOM 742 O GLU 97 -6.018 1.578 15.428 1.00105.83 O ATOM 743 N ARG 98 -5.297 3.041 13.869 1.00 38.38 N ATOM 744 CA ARG 98 -5.766 2.281 12.743 1.00 38.38 C ATOM 745 CB ARG 98 -5.452 2.962 11.401 1.00 38.38 C ATOM 746 CG ARG 98 -6.248 4.243 11.153 1.00 38.38 C ATOM 747 CD ARG 98 -5.859 4.954 9.856 1.00 38.38 C ATOM 748 NE ARG 98 -6.838 6.056 9.637 1.00 38.38 N ATOM 749 CZ ARG 98 -7.915 5.845 8.827 1.00 38.38 C ATOM 750 NH1 ARG 98 -8.064 4.647 8.190 1.00 38.38 N ATOM 751 NH2 ARG 98 -8.842 6.831 8.651 1.00 38.38 N ATOM 752 C ARG 98 -5.096 0.943 12.703 1.00 38.38 C ATOM 753 O ARG 98 -5.745 -0.069 12.444 1.00 38.38 O ATOM 754 N PHE 99 -3.776 0.896 12.957 1.00 69.53 N ATOM 755 CA PHE 99 -3.060 -0.345 12.861 1.00 69.53 C ATOM 756 CB PHE 99 -1.548 -0.189 13.107 1.00 69.53 C ATOM 757 CG PHE 99 -0.903 -1.481 12.741 1.00 69.53 C ATOM 758 CD1 PHE 99 -0.563 -1.739 11.432 1.00 69.53 C ATOM 759 CD2 PHE 99 -0.640 -2.434 13.696 1.00 69.53 C ATOM 760 CE1 PHE 99 0.031 -2.928 11.080 1.00 69.53 C ATOM 761 CE2 PHE 99 -0.046 -3.626 13.351 1.00 69.53 C ATOM 762 CZ PHE 99 0.291 -3.875 12.042 1.00 69.53 C ATOM 763 C PHE 99 -3.597 -1.290 13.886 1.00 69.53 C ATOM 764 O PHE 99 -3.833 -2.464 13.604 1.00 69.53 O ATOM 765 N LEU 100 -3.822 -0.791 15.114 1.00 34.83 N ATOM 766 CA LEU 100 -4.310 -1.644 16.153 1.00 34.83 C ATOM 767 CB LEU 100 -4.448 -0.927 17.507 1.00 34.83 C ATOM 768 CG LEU 100 -3.100 -0.456 18.084 1.00 34.83 C ATOM 769 CD1 LEU 100 -3.273 0.157 19.484 1.00 34.83 C ATOM 770 CD2 LEU 100 -2.052 -1.580 18.052 1.00 34.83 C ATOM 771 C LEU 100 -5.659 -2.149 15.747 1.00 34.83 C ATOM 772 O LEU 100 -5.980 -3.318 15.954 1.00 34.83 O ATOM 773 N GLU 101 -6.485 -1.280 15.135 1.00103.80 N ATOM 774 CA GLU 101 -7.808 -1.681 14.753 1.00103.80 C ATOM 775 CB GLU 101 -8.624 -0.546 14.113 1.00103.80 C ATOM 776 CG GLU 101 -10.041 -0.970 13.725 1.00103.80 C ATOM 777 CD GLU 101 -10.824 -1.193 15.011 1.00103.80 C ATOM 778 OE1 GLU 101 -11.207 -0.181 15.655 1.00103.80 O ATOM 779 OE2 GLU 101 -11.039 -2.381 15.371 1.00103.80 O ATOM 780 C GLU 101 -7.709 -2.787 13.749 1.00103.80 C ATOM 781 O GLU 101 -8.479 -3.745 13.793 1.00103.80 O ATOM 782 N GLU 102 -6.751 -2.683 12.809 1.00 24.56 N ATOM 783 CA GLU 102 -6.599 -3.679 11.786 1.00 24.56 C ATOM 784 CB GLU 102 -5.524 -3.317 10.748 1.00 24.56 C ATOM 785 CG GLU 102 -5.399 -4.348 9.625 1.00 24.56 C ATOM 786 CD GLU 102 -4.311 -3.884 8.667 1.00 24.56 C ATOM 787 OE1 GLU 102 -3.701 -2.815 8.937 1.00 24.56 O ATOM 788 OE2 GLU 102 -4.079 -4.592 7.651 1.00 24.56 O ATOM 789 C GLU 102 -6.197 -4.971 12.424 1.00 24.56 C ATOM 790 O GLU 102 -6.648 -6.038 12.011 1.00 24.56 O ATOM 791 N ALA 103 -5.329 -4.901 13.451 1.00 22.55 N ATOM 792 CA ALA 103 -4.852 -6.083 14.111 1.00 22.55 C ATOM 793 CB ALA 103 -3.842 -5.773 15.229 1.00 22.55 C ATOM 794 C ALA 103 -6.013 -6.791 14.735 1.00 22.55 C ATOM 795 O ALA 103 -6.128 -8.012 14.641 1.00 22.55 O ATOM 796 N LYS 104 -6.919 -6.036 15.382 1.00 59.30 N ATOM 797 CA LYS 104 -8.061 -6.631 16.011 1.00 59.30 C ATOM 798 CB LYS 104 -8.934 -5.592 16.738 1.00 59.30 C ATOM 799 CG LYS 104 -10.156 -6.187 17.441 1.00 59.30 C ATOM 800 CD LYS 104 -10.830 -5.214 18.410 1.00 59.30 C ATOM 801 CE LYS 104 -12.054 -5.797 19.119 1.00 59.30 C ATOM 802 NZ LYS 104 -12.633 -4.793 20.041 1.00 59.30 N ATOM 803 C LYS 104 -8.889 -7.269 14.938 1.00 59.30 C ATOM 804 O LYS 104 -9.425 -8.360 15.120 1.00 59.30 O ATOM 805 N SER 105 -8.998 -6.594 13.777 1.00 58.81 N ATOM 806 CA SER 105 -9.779 -7.083 12.676 1.00 58.81 C ATOM 807 CB SER 105 -9.784 -6.112 11.481 1.00 58.81 C ATOM 808 OG SER 105 -10.564 -6.641 10.419 1.00 58.81 O ATOM 809 C SER 105 -9.163 -8.364 12.212 1.00 58.81 C ATOM 810 O SER 105 -9.850 -9.264 11.733 1.00 58.81 O ATOM 811 N ILE 106 -7.832 -8.474 12.366 1.00 85.55 N ATOM 812 CA ILE 106 -7.086 -9.635 11.980 1.00 85.55 C ATOM 813 CB ILE 106 -5.616 -9.506 12.254 1.00 85.55 C ATOM 814 CG2 ILE 106 -4.965 -10.873 11.980 1.00 85.55 C ATOM 815 CG1 ILE 106 -5.015 -8.362 11.425 1.00 85.55 C ATOM 816 CD1 ILE 106 -5.119 -8.582 9.915 1.00 85.55 C ATOM 817 C ILE 106 -7.598 -10.779 12.792 1.00 85.55 C ATOM 818 O ILE 106 -7.635 -11.915 12.322 1.00 85.55 O ATOM 819 N GLY 107 -8.024 -10.504 14.037 1.00 28.33 N ATOM 820 CA GLY 107 -8.452 -11.559 14.906 1.00 28.33 C ATOM 821 C GLY 107 -7.554 -11.537 16.097 1.00 28.33 C ATOM 822 O GLY 107 -7.737 -12.305 17.040 1.00 28.33 O ATOM 823 N LEU 108 -6.542 -10.650 16.069 1.00103.97 N ATOM 824 CA LEU 108 -5.648 -10.475 17.176 1.00103.97 C ATOM 825 CB LEU 108 -4.499 -9.526 16.777 1.00103.97 C ATOM 826 CG LEU 108 -3.436 -9.240 17.848 1.00103.97 C ATOM 827 CD1 LEU 108 -4.001 -8.380 18.984 1.00103.97 C ATOM 828 CD2 LEU 108 -2.767 -10.539 18.318 1.00103.97 C ATOM 829 C LEU 108 -6.480 -9.879 18.274 1.00103.97 C ATOM 830 O LEU 108 -7.129 -8.851 18.085 1.00103.97 O ATOM 831 N ASP 109 -6.482 -10.519 19.463 1.00 35.33 N ATOM 832 CA ASP 109 -7.331 -10.094 20.545 1.00 35.33 C ATOM 833 CB ASP 109 -7.546 -11.174 21.622 1.00 35.33 C ATOM 834 CG ASP 109 -8.437 -12.260 21.035 1.00 35.33 C ATOM 835 OD1 ASP 109 -9.055 -12.003 19.966 1.00 35.33 O ATOM 836 OD2 ASP 109 -8.512 -13.360 21.643 1.00 35.33 O ATOM 837 C ASP 109 -6.765 -8.889 21.224 1.00 35.33 C ATOM 838 O ASP 109 -5.562 -8.647 21.212 1.00 35.33 O ATOM 839 N ASP 110 -7.656 -8.105 21.860 1.00 72.50 N ATOM 840 CA ASP 110 -7.297 -6.893 22.538 1.00 72.50 C ATOM 841 CB ASP 110 -8.529 -6.164 23.110 1.00 72.50 C ATOM 842 CG ASP 110 -8.095 -4.819 23.681 1.00 72.50 C ATOM 843 OD1 ASP 110 -6.892 -4.470 23.541 1.00 72.50 O ATOM 844 OD2 ASP 110 -8.968 -4.118 24.258 1.00 72.50 O ATOM 845 C ASP 110 -6.404 -7.241 23.686 1.00 72.50 C ATOM 846 O ASP 110 -5.457 -6.518 23.992 1.00 72.50 O ATOM 847 N GLN 111 -6.680 -8.378 24.346 1.00 81.74 N ATOM 848 CA GLN 111 -5.931 -8.765 25.505 1.00 81.74 C ATOM 849 CB GLN 111 -6.396 -10.116 26.067 1.00 81.74 C ATOM 850 CG GLN 111 -5.612 -10.556 27.301 1.00 81.74 C ATOM 851 CD GLN 111 -6.109 -11.935 27.717 1.00 81.74 C ATOM 852 OE1 GLN 111 -5.464 -12.946 27.442 1.00 81.74 O ATOM 853 NE2 GLN 111 -7.288 -11.981 28.394 1.00 81.74 N ATOM 854 C GLN 111 -4.495 -8.928 25.134 1.00 81.74 C ATOM 855 O GLN 111 -3.608 -8.481 25.858 1.00 81.74 O ATOM 856 N THR 112 -4.223 -9.593 23.999 1.00 98.93 N ATOM 857 CA THR 112 -2.861 -9.802 23.598 1.00 98.93 C ATOM 858 CB THR 112 -2.713 -10.792 22.480 1.00 98.93 C ATOM 859 OG1 THR 112 -1.342 -11.119 22.296 1.00 98.93 O ATOM 860 CG2 THR 112 -3.294 -10.191 21.197 1.00 98.93 C ATOM 861 C THR 112 -2.255 -8.502 23.175 1.00 98.93 C ATOM 862 O THR 112 -1.093 -8.232 23.473 1.00 98.93 O ATOM 863 N ALA 113 -3.037 -7.641 22.495 1.00 32.58 N ATOM 864 CA ALA 113 -2.501 -6.411 21.988 1.00 32.58 C ATOM 865 CB ALA 113 -3.559 -5.544 21.284 1.00 32.58 C ATOM 866 C ALA 113 -1.965 -5.623 23.140 1.00 32.58 C ATOM 867 O ALA 113 -0.897 -5.019 23.039 1.00 32.58 O ATOM 868 N ILE 114 -2.687 -5.608 24.276 1.00127.90 N ATOM 869 CA ILE 114 -2.205 -4.854 25.395 1.00127.90 C ATOM 870 CB ILE 114 -3.180 -4.751 26.544 1.00127.90 C ATOM 871 CG2 ILE 114 -4.436 -4.051 25.997 1.00127.90 C ATOM 872 CG1 ILE 114 -3.479 -6.103 27.215 1.00127.90 C ATOM 873 CD1 ILE 114 -2.390 -6.585 28.171 1.00127.90 C ATOM 874 C ILE 114 -0.915 -5.462 25.852 1.00127.90 C ATOM 875 O ILE 114 0.021 -4.748 26.209 1.00127.90 O ATOM 876 N GLU 115 -0.823 -6.806 25.837 1.00 57.68 N ATOM 877 CA GLU 115 0.368 -7.470 26.285 1.00 57.68 C ATOM 878 CB GLU 115 0.269 -9.001 26.157 1.00 57.68 C ATOM 879 CG GLU 115 -0.798 -9.636 27.052 1.00 57.68 C ATOM 880 CD GLU 115 -0.256 -9.725 28.472 1.00 57.68 C ATOM 881 OE1 GLU 115 0.930 -9.356 28.682 1.00 57.68 O ATOM 882 OE2 GLU 115 -1.023 -10.171 29.367 1.00 57.68 O ATOM 883 C GLU 115 1.500 -7.022 25.414 1.00 57.68 C ATOM 884 O GLU 115 2.582 -6.699 25.900 1.00 57.68 O ATOM 885 N LEU 116 1.278 -6.980 24.089 1.00 78.88 N ATOM 886 CA LEU 116 2.313 -6.551 23.197 1.00 78.88 C ATOM 887 CB LEU 116 1.942 -6.677 21.706 1.00 78.88 C ATOM 888 CG LEU 116 1.979 -8.122 21.168 1.00 78.88 C ATOM 889 CD1 LEU 116 1.006 -9.044 21.913 1.00 78.88 C ATOM 890 CD2 LEU 116 1.757 -8.141 19.648 1.00 78.88 C ATOM 891 C LEU 116 2.621 -5.116 23.478 1.00 78.88 C ATOM 892 O LEU 116 3.781 -4.708 23.428 1.00 78.88 O ATOM 893 N LEU 117 1.588 -4.316 23.801 1.00136.88 N ATOM 894 CA LEU 117 1.775 -2.908 24.011 1.00136.88 C ATOM 895 CB LEU 117 0.475 -2.175 24.384 1.00136.88 C ATOM 896 CG LEU 117 -0.590 -2.191 23.273 1.00136.88 C ATOM 897 CD1 LEU 117 -1.858 -1.437 23.707 1.00136.88 C ATOM 898 CD2 LEU 117 -0.012 -1.683 21.942 1.00136.88 C ATOM 899 C LEU 117 2.723 -2.699 25.142 1.00136.88 C ATOM 900 O LEU 117 3.615 -1.857 25.049 1.00136.88 O ATOM 901 N ILE 118 2.573 -3.464 26.239 1.00129.88 N ATOM 902 CA ILE 118 3.469 -3.248 27.335 1.00129.88 C ATOM 903 CB ILE 118 3.197 -4.091 28.553 1.00129.88 C ATOM 904 CG2 ILE 118 3.474 -5.565 28.227 1.00129.88 C ATOM 905 CG1 ILE 118 4.025 -3.564 29.737 1.00129.88 C ATOM 906 CD1 ILE 118 3.615 -2.165 30.193 1.00129.88 C ATOM 907 C ILE 118 4.838 -3.546 26.830 1.00129.88 C ATOM 908 O ILE 118 5.791 -2.825 27.124 1.00129.88 O ATOM 909 N LYS 119 4.965 -4.616 26.024 1.00146.13 N ATOM 910 CA LYS 119 6.238 -4.930 25.459 1.00146.13 C ATOM 911 CB LYS 119 6.271 -6.258 24.681 1.00146.13 C ATOM 912 CG LYS 119 6.068 -7.509 25.539 1.00146.13 C ATOM 913 CD LYS 119 5.801 -8.765 24.706 1.00146.13 C ATOM 914 CE LYS 119 5.615 -10.037 25.537 1.00146.13 C ATOM 915 NZ LYS 119 5.353 -11.192 24.645 1.00146.13 N ATOM 916 C LYS 119 6.514 -3.847 24.472 1.00146.13 C ATOM 917 O LYS 119 5.623 -3.093 24.083 1.00146.13 O ATOM 918 N ARG 120 7.783 -3.705 24.070 1.00100.40 N ATOM 919 CA ARG 120 8.087 -2.686 23.116 1.00100.40 C ATOM 920 CB ARG 120 9.431 -1.987 23.383 1.00100.40 C ATOM 921 CG ARG 120 9.428 -1.158 24.667 1.00100.40 C ATOM 922 CD ARG 120 9.353 -2.005 25.938 1.00100.40 C ATOM 923 NE ARG 120 9.354 -1.069 27.097 1.00100.40 N ATOM 924 CZ ARG 120 10.530 -0.694 27.684 1.00100.40 C ATOM 925 NH1 ARG 120 11.717 -1.183 27.219 1.00100.40 N ATOM 926 NH2 ARG 120 10.514 0.168 28.742 1.00100.40 N ATOM 927 C ARG 120 8.178 -3.363 21.756 1.00100.40 C ATOM 928 O ARG 120 7.416 -2.950 20.841 1.00100.40 O ATOM 929 OXT ARG 120 9.011 -4.297 21.612 1.00100.40 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 288 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 22.04 92.9 70 92.1 76 ARMSMC SECONDARY STRUCTURE . . 20.69 96.7 61 95.3 64 ARMSMC SURFACE . . . . . . . . 22.67 92.4 66 91.7 72 ARMSMC BURIED . . . . . . . . 3.98 100.0 4 100.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.74 41.9 31 91.2 34 ARMSSC1 RELIABLE SIDE CHAINS . 86.74 41.9 31 91.2 34 ARMSSC1 SECONDARY STRUCTURE . . 86.36 40.7 27 96.4 28 ARMSSC1 SURFACE . . . . . . . . 86.74 41.9 31 91.2 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.69 53.6 28 93.3 30 ARMSSC2 RELIABLE SIDE CHAINS . 68.08 59.1 22 95.7 23 ARMSSC2 SECONDARY STRUCTURE . . 69.76 58.3 24 100.0 24 ARMSSC2 SURFACE . . . . . . . . 76.69 53.6 28 93.3 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.58 61.5 13 92.9 14 ARMSSC3 RELIABLE SIDE CHAINS . 70.70 54.5 11 91.7 12 ARMSSC3 SECONDARY STRUCTURE . . 65.58 61.5 13 100.0 13 ARMSSC3 SURFACE . . . . . . . . 65.58 61.5 13 92.9 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.30 66.7 6 85.7 7 ARMSSC4 RELIABLE SIDE CHAINS . 87.30 66.7 6 85.7 7 ARMSSC4 SECONDARY STRUCTURE . . 87.30 66.7 6 100.0 6 ARMSSC4 SURFACE . . . . . . . . 87.30 66.7 6 85.7 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.24 (Number of atoms: 36) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.24 36 92.3 39 CRMSCA CRN = ALL/NP . . . . . 0.0622 CRMSCA SECONDARY STRUCTURE . . 2.22 31 96.9 32 CRMSCA SURFACE . . . . . . . . 2.29 34 91.9 37 CRMSCA BURIED . . . . . . . . 1.11 2 100.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.26 179 92.3 194 CRMSMC SECONDARY STRUCTURE . . 2.25 155 96.9 160 CRMSMC SURFACE . . . . . . . . 2.31 169 91.8 184 CRMSMC BURIED . . . . . . . . 1.24 10 100.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.98 144 91.7 157 CRMSSC RELIABLE SIDE CHAINS . 4.91 128 92.1 139 CRMSSC SECONDARY STRUCTURE . . 5.05 128 98.5 130 CRMSSC SURFACE . . . . . . . . 5.01 142 91.6 155 CRMSSC BURIED . . . . . . . . 1.64 2 100.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.80 288 92.0 313 CRMSALL SECONDARY STRUCTURE . . 3.86 252 97.7 258 CRMSALL SURFACE . . . . . . . . 3.86 278 91.7 303 CRMSALL BURIED . . . . . . . . 1.24 10 100.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 70.673 0.928 0.931 36 92.3 39 ERRCA SECONDARY STRUCTURE . . 73.237 0.932 0.935 31 96.9 32 ERRCA SURFACE . . . . . . . . 73.273 0.928 0.932 34 91.9 37 ERRCA BURIED . . . . . . . . 26.472 0.919 0.922 2 100.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 70.949 0.930 0.933 179 92.3 194 ERRMC SECONDARY STRUCTURE . . 73.265 0.933 0.936 155 96.9 160 ERRMC SURFACE . . . . . . . . 73.586 0.930 0.934 169 91.8 184 ERRMC BURIED . . . . . . . . 26.381 0.915 0.919 10 100.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 74.780 0.878 0.888 144 91.7 157 ERRSC RELIABLE SIDE CHAINS . 74.589 0.880 0.889 128 92.1 139 ERRSC SECONDARY STRUCTURE . . 76.597 0.883 0.891 128 98.5 130 ERRSC SURFACE . . . . . . . . 75.468 0.878 0.887 142 91.6 155 ERRSC BURIED . . . . . . . . 25.985 0.884 0.891 2 100.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 72.835 0.907 0.913 288 92.0 313 ERRALL SECONDARY STRUCTURE . . 75.056 0.911 0.916 252 97.7 258 ERRALL SURFACE . . . . . . . . 74.506 0.907 0.913 278 91.7 303 ERRALL BURIED . . . . . . . . 26.381 0.915 0.919 10 100.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 3 16 33 36 36 36 39 DISTCA CA (P) 7.69 41.03 84.62 92.31 92.31 39 DISTCA CA (RMS) 0.82 1.46 2.05 2.24 2.24 DISTCA ALL (N) 22 107 183 241 282 288 313 DISTALL ALL (P) 7.03 34.19 58.47 77.00 90.10 313 DISTALL ALL (RMS) 0.86 1.46 1.95 2.54 3.41 DISTALL END of the results output