####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 30 ( 235), selected 30 , name T0586TS020_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 30 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586TS020_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 93 - 114 4.94 11.44 LCS_AVERAGE: 53.93 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 97 - 111 1.77 15.56 LCS_AVERAGE: 26.07 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 98 - 110 0.71 16.96 LCS_AVERAGE: 21.45 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 30 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 3 4 18 2 3 4 5 5 6 8 10 11 11 13 17 18 19 20 20 20 21 23 24 LCS_GDT Q 86 Q 86 3 4 18 2 3 4 5 5 7 9 11 14 16 16 18 20 21 22 23 24 25 25 27 LCS_GDT L 87 L 87 5 6 18 3 5 6 8 8 8 9 11 14 16 16 18 20 21 22 23 24 26 26 27 LCS_GDT K 88 K 88 5 6 18 3 5 6 8 8 8 9 11 14 16 16 18 20 21 22 23 24 26 26 27 LCS_GDT K 89 K 89 5 6 18 3 5 6 8 8 8 9 10 13 16 16 18 20 21 22 23 24 26 26 27 LCS_GDT E 90 E 90 5 6 18 3 5 6 8 8 8 9 10 12 14 16 18 20 21 22 23 24 26 26 27 LCS_GDT L 91 L 91 6 6 18 4 5 6 8 8 8 9 11 14 16 16 18 20 21 22 23 24 26 26 27 LCS_GDT A 92 A 92 6 6 21 4 5 6 6 6 7 9 11 14 16 16 18 20 21 22 23 24 26 26 27 LCS_GDT D 93 D 93 6 6 22 4 5 6 6 6 7 9 11 13 16 16 18 20 21 22 23 24 26 26 27 LCS_GDT A 94 A 94 6 6 22 4 5 6 6 6 7 8 10 14 17 18 18 20 21 22 23 24 26 26 27 LCS_GDT I 95 I 95 6 6 22 3 5 6 8 8 8 9 10 15 17 18 18 20 21 22 23 24 26 26 27 LCS_GDT T 96 T 96 6 6 22 1 3 6 8 8 8 9 14 16 17 18 18 19 21 22 23 24 26 26 27 LCS_GDT E 97 E 97 3 15 22 1 5 6 8 10 14 15 15 16 17 18 18 20 21 22 23 24 26 26 27 LCS_GDT R 98 R 98 13 15 22 11 12 13 13 14 14 15 15 15 16 17 18 20 21 22 23 24 25 26 27 LCS_GDT F 99 F 99 13 15 22 11 12 13 13 14 14 15 15 16 17 18 18 20 21 22 23 24 26 26 27 LCS_GDT L 100 L 100 13 15 22 11 12 13 13 14 14 15 15 16 17 18 18 20 21 22 23 24 26 26 27 LCS_GDT E 101 E 101 13 15 22 11 12 13 13 14 14 15 15 16 17 18 18 19 20 22 23 24 26 26 27 LCS_GDT E 102 E 102 13 15 22 11 12 13 13 14 14 15 15 16 17 18 18 20 21 22 23 24 26 26 27 LCS_GDT A 103 A 103 13 15 22 11 12 13 13 14 14 15 15 16 17 18 18 20 21 22 23 24 26 26 27 LCS_GDT K 104 K 104 13 15 22 11 12 13 13 14 14 15 15 16 17 18 18 19 20 22 23 24 26 26 27 LCS_GDT S 105 S 105 13 15 22 11 12 13 13 14 14 15 15 16 17 18 18 19 20 21 23 24 26 26 27 LCS_GDT I 106 I 106 13 15 22 11 12 13 13 14 14 15 15 16 17 18 18 19 20 21 23 24 26 26 27 LCS_GDT G 107 G 107 13 15 22 11 12 13 13 14 14 15 15 16 17 18 18 19 20 21 23 24 26 26 27 LCS_GDT L 108 L 108 13 15 22 11 12 13 13 14 14 15 15 16 17 18 18 19 20 21 23 24 26 26 27 LCS_GDT D 109 D 109 13 15 22 5 12 13 13 14 14 15 15 16 17 18 18 20 21 22 23 24 26 26 27 LCS_GDT D 110 D 110 13 15 22 3 7 13 13 14 14 15 15 16 17 18 18 20 21 22 23 24 26 26 27 LCS_GDT Q 111 Q 111 8 15 22 3 4 8 12 14 14 15 15 16 17 18 18 20 21 22 23 24 26 26 27 LCS_GDT T 112 T 112 3 4 22 3 4 4 5 7 9 9 12 16 17 18 18 20 21 22 23 24 26 26 27 LCS_GDT A 113 A 113 3 4 22 3 3 3 3 4 4 4 5 10 10 16 18 18 19 22 23 24 26 26 27 LCS_GDT I 114 I 114 3 4 22 0 3 3 3 4 4 4 5 6 6 12 18 18 18 19 20 21 21 22 23 LCS_AVERAGE LCS_A: 33.82 ( 21.45 26.07 53.93 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 12 13 13 14 14 15 15 16 17 18 18 20 21 22 23 24 26 26 27 GDT PERCENT_AT 28.21 30.77 33.33 33.33 35.90 35.90 38.46 38.46 41.03 43.59 46.15 46.15 51.28 53.85 56.41 58.97 61.54 66.67 66.67 69.23 GDT RMS_LOCAL 0.26 0.41 0.71 0.71 1.15 1.15 1.77 1.77 2.98 3.30 3.64 3.44 4.74 4.89 5.05 5.25 5.58 6.24 6.24 6.41 GDT RMS_ALL_AT 17.24 17.12 16.96 16.96 16.40 16.40 15.56 15.56 13.40 12.44 11.59 12.85 8.37 8.41 8.40 8.38 8.11 7.80 7.80 7.82 # Checking swapping # possible swapping detected: D 85 D 85 # possible swapping detected: D 93 D 93 # possible swapping detected: E 97 E 97 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 38.436 0 0.086 1.115 43.597 0.000 0.000 LGA Q 86 Q 86 35.459 0 0.560 1.273 37.024 0.000 0.000 LGA L 87 L 87 30.508 0 0.556 1.224 32.183 0.000 0.000 LGA K 88 K 88 29.001 0 0.157 0.984 36.693 0.000 0.000 LGA K 89 K 89 25.746 0 0.628 0.724 27.458 0.000 0.000 LGA E 90 E 90 21.770 0 0.159 0.971 22.915 0.000 0.000 LGA L 91 L 91 19.813 0 0.623 0.704 22.663 0.000 0.000 LGA A 92 A 92 17.305 0 0.065 0.049 18.780 0.000 0.000 LGA D 93 D 93 16.531 0 0.000 1.092 20.919 0.000 0.000 LGA A 94 A 94 13.634 0 0.094 0.100 15.136 0.000 0.000 LGA I 95 I 95 10.704 0 0.451 0.733 14.997 0.476 0.238 LGA T 96 T 96 9.127 0 0.591 1.013 10.949 4.762 2.925 LGA E 97 E 97 4.734 0 0.571 1.180 8.970 39.167 23.122 LGA R 98 R 98 2.151 0 0.601 0.799 11.644 75.238 33.506 LGA F 99 F 99 1.651 0 0.033 0.466 1.891 72.857 74.416 LGA L 100 L 100 1.543 0 0.043 1.393 4.125 77.143 65.952 LGA E 101 E 101 1.174 0 0.056 1.193 4.385 83.690 72.116 LGA E 102 E 102 1.376 0 0.016 0.478 4.486 81.429 67.513 LGA A 103 A 103 0.830 0 0.079 0.075 1.155 90.595 88.762 LGA K 104 K 104 0.258 0 0.075 0.980 6.220 95.238 70.529 LGA S 105 S 105 0.837 0 0.129 0.185 1.124 88.214 85.952 LGA I 106 I 106 0.935 0 0.272 1.013 4.463 88.214 73.452 LGA G 107 G 107 1.111 0 0.119 0.119 1.288 83.690 83.690 LGA L 108 L 108 0.933 0 0.168 1.443 4.486 88.214 74.345 LGA D 109 D 109 0.344 0 0.139 0.996 4.007 95.238 82.857 LGA D 110 D 110 1.349 0 0.602 0.872 4.378 79.524 62.381 LGA Q 111 Q 111 2.273 0 0.576 1.134 7.422 49.524 38.042 LGA T 112 T 112 8.608 0 0.595 0.976 12.441 6.905 3.946 LGA A 113 A 113 9.414 0 0.516 0.530 10.401 1.190 0.952 LGA I 114 I 114 8.118 0 0.601 0.760 9.373 3.095 5.298 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 30 120 120 100.00 235 235 100.00 39 SUMMARY(RMSD_GDC): 7.568 7.434 8.585 30.882 25.897 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 30 39 4.0 15 1.77 40.385 36.836 0.802 LGA_LOCAL RMSD: 1.770 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.565 Number of assigned atoms: 30 Std_ASGN_ATOMS RMSD: 7.568 Standard rmsd on all 30 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.292018 * X + 0.364286 * Y + -0.884319 * Z + 103.141312 Y_new = 0.586763 * X + -0.798403 * Y + -0.135134 * Z + 156.535370 Z_new = -0.755271 * X + -0.479424 * Y + -0.446898 * Z + 858.249451 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.109009 0.856068 -2.321096 [DEG: 63.5415 49.0491 -132.9890 ] ZXZ: -1.419158 2.034091 -2.136391 [DEG: -81.3118 116.5448 -122.4062 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586TS020_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586TS020_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 30 39 4.0 15 1.77 36.836 7.57 REMARK ---------------------------------------------------------- MOLECULE T0586TS020_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0586 REMARK MODEL 1 REMARK PARENT 2wv0_A ATOM 649 N ASP 85 -9.953 -11.164 -2.020 1.00 0.00 N ATOM 650 CA ASP 85 -9.311 -10.949 -3.322 1.00 0.00 C ATOM 651 C ASP 85 -9.785 -9.605 -3.915 1.00 0.00 C ATOM 652 O ASP 85 -8.954 -8.697 -4.160 1.00 0.00 O ATOM 653 CB ASP 85 -9.667 -12.055 -4.297 1.00 0.00 C ATOM 654 CG ASP 85 -8.546 -13.090 -4.426 1.00 0.00 C ATOM 655 OD1 ASP 85 -8.654 -14.012 -5.265 1.00 0.00 O ATOM 656 OD2 ASP 85 -7.568 -12.969 -3.631 1.00 0.00 O ATOM 657 N GLN 86 -11.086 -9.403 -3.998 1.00 0.00 N ATOM 658 CA GLN 86 -11.590 -8.158 -4.640 1.00 0.00 C ATOM 659 C GLN 86 -12.768 -7.658 -3.758 1.00 0.00 C ATOM 660 O GLN 86 -13.919 -8.070 -3.916 1.00 0.00 O ATOM 661 CB GLN 86 -12.120 -8.489 -6.052 1.00 0.00 C ATOM 662 CG GLN 86 -12.246 -7.259 -6.923 1.00 0.00 C ATOM 663 CD GLN 86 -10.948 -6.766 -7.492 1.00 0.00 C ATOM 664 NE2 GLN 86 -9.832 -7.460 -7.237 1.00 0.00 N ATOM 665 OE1 GLN 86 -10.840 -5.577 -7.861 1.00 0.00 O ATOM 666 N LEU 87 -12.500 -6.571 -3.011 1.00 0.00 N ATOM 667 CA LEU 87 -13.439 -6.157 -1.962 1.00 0.00 C ATOM 668 C LEU 87 -13.308 -4.634 -1.759 1.00 0.00 C ATOM 669 O LEU 87 -12.463 -4.139 -0.987 1.00 0.00 O ATOM 670 CB LEU 87 -13.092 -6.834 -0.636 1.00 0.00 C ATOM 671 CG LEU 87 -13.938 -6.392 0.531 1.00 0.00 C ATOM 672 CD1 LEU 87 -13.644 -7.098 1.835 1.00 0.00 C ATOM 673 CD2 LEU 87 -15.410 -6.734 0.303 1.00 0.00 C ATOM 674 N LYS 88 -14.071 -3.869 -2.530 1.00 0.00 N ATOM 675 CA LYS 88 -13.927 -2.443 -2.598 1.00 0.00 C ATOM 676 C LYS 88 -13.728 -1.792 -1.208 1.00 0.00 C ATOM 677 O LYS 88 -12.595 -1.352 -0.953 1.00 0.00 O ATOM 678 CB LYS 88 -12.671 -2.088 -3.413 1.00 0.00 C ATOM 679 CG LYS 88 -12.896 -0.987 -4.463 1.00 0.00 C ATOM 680 CD LYS 88 -14.045 -1.311 -5.402 1.00 0.00 C ATOM 681 CE LYS 88 -13.528 -2.213 -6.529 1.00 0.00 C ATOM 682 NZ LYS 88 -13.674 -1.594 -7.862 1.00 0.00 N ATOM 683 N LYS 89 -14.844 -1.324 -0.609 1.00 0.00 N ATOM 684 CA LYS 89 -14.685 -0.768 0.753 1.00 0.00 C ATOM 685 C LYS 89 -14.645 -1.918 1.774 1.00 0.00 C ATOM 686 O LYS 89 -15.167 -2.975 1.418 1.00 0.00 O ATOM 687 CB LYS 89 -15.826 0.195 1.080 1.00 0.00 C ATOM 688 CG LYS 89 -15.538 1.069 2.295 1.00 0.00 C ATOM 689 CD LYS 89 -16.592 2.156 2.550 1.00 0.00 C ATOM 690 CE LYS 89 -16.006 3.262 3.413 1.00 0.00 C ATOM 691 NZ LYS 89 -14.935 4.068 2.757 1.00 0.00 N ATOM 692 N GLU 90 -13.715 -1.869 2.717 1.00 0.00 N ATOM 693 CA GLU 90 -13.712 -2.882 3.770 1.00 0.00 C ATOM 694 C GLU 90 -12.400 -3.653 3.760 1.00 0.00 C ATOM 695 O GLU 90 -12.075 -4.422 4.682 1.00 0.00 O ATOM 696 CB GLU 90 -14.000 -2.271 5.144 1.00 0.00 C ATOM 697 CG GLU 90 -15.333 -1.543 5.274 1.00 0.00 C ATOM 698 CD GLU 90 -15.188 -0.399 6.280 1.00 0.00 C ATOM 699 OE1 GLU 90 -14.051 0.075 6.482 1.00 0.00 O ATOM 700 OE2 GLU 90 -16.153 -0.158 7.023 1.00 0.00 O ATOM 701 N LEU 91 -11.461 -3.155 2.912 1.00 0.00 N ATOM 702 CA LEU 91 -10.092 -3.619 2.941 1.00 0.00 C ATOM 703 C LEU 91 -9.194 -2.729 3.797 1.00 0.00 C ATOM 704 O LEU 91 -9.271 -1.507 3.646 1.00 0.00 O ATOM 705 CB LEU 91 -9.505 -3.824 1.534 1.00 0.00 C ATOM 706 CG LEU 91 -8.439 -4.893 1.419 1.00 0.00 C ATOM 707 CD1 LEU 91 -7.692 -4.872 0.107 1.00 0.00 C ATOM 708 CD2 LEU 91 -9.040 -6.307 1.502 1.00 0.00 C ATOM 709 N ALA 92 -8.328 -3.324 4.619 1.00 0.00 N ATOM 710 CA ALA 92 -7.699 -2.537 5.696 1.00 0.00 C ATOM 711 C ALA 92 -6.405 -1.939 5.207 1.00 0.00 C ATOM 712 O ALA 92 -6.166 -0.764 5.404 1.00 0.00 O ATOM 713 CB ALA 92 -7.401 -3.462 6.890 1.00 0.00 C ATOM 714 N ASP 93 -5.651 -2.691 4.388 1.00 0.00 N ATOM 715 CA ASP 93 -4.353 -2.181 3.953 1.00 0.00 C ATOM 716 C ASP 93 -4.453 -1.141 2.844 1.00 0.00 C ATOM 717 O ASP 93 -3.615 -0.271 2.733 1.00 0.00 O ATOM 718 CB ASP 93 -3.365 -3.295 3.632 1.00 0.00 C ATOM 719 CG ASP 93 -2.855 -4.006 4.852 1.00 0.00 C ATOM 720 OD1 ASP 93 -2.796 -3.419 5.957 1.00 0.00 O ATOM 721 OD2 ASP 93 -2.350 -5.143 4.709 1.00 0.00 O ATOM 722 N ALA 94 -5.546 -1.183 2.085 1.00 0.00 N ATOM 723 CA ALA 94 -5.908 -0.007 1.284 1.00 0.00 C ATOM 724 C ALA 94 -5.747 1.343 1.991 1.00 0.00 C ATOM 725 O ALA 94 -5.160 2.266 1.439 1.00 0.00 O ATOM 726 CB ALA 94 -7.398 -0.062 1.007 1.00 0.00 C ATOM 727 N ILE 95 -6.262 1.440 3.220 1.00 0.00 N ATOM 728 CA ILE 95 -6.166 2.663 4.026 1.00 0.00 C ATOM 729 C ILE 95 -5.252 2.553 5.222 1.00 0.00 C ATOM 730 O ILE 95 -4.213 1.909 5.204 1.00 0.00 O ATOM 731 CB ILE 95 -7.578 3.086 4.475 1.00 0.00 C ATOM 732 CG1 ILE 95 -8.531 3.282 3.329 1.00 0.00 C ATOM 733 CG2 ILE 95 -7.478 4.337 5.365 1.00 0.00 C ATOM 734 CD1 ILE 95 -8.114 4.412 2.369 1.00 0.00 C ATOM 735 N THR 96 -5.682 3.231 6.311 1.00 0.00 N ATOM 736 CA THR 96 -4.975 3.327 7.547 1.00 0.00 C ATOM 737 C THR 96 -5.967 2.948 8.667 1.00 0.00 C ATOM 738 O THR 96 -6.826 3.726 9.040 1.00 0.00 O ATOM 739 CB THR 96 -4.386 4.724 7.769 1.00 0.00 C ATOM 740 CG2 THR 96 -3.694 4.834 9.132 1.00 0.00 C ATOM 741 OG1 THR 96 -3.412 4.929 6.769 1.00 0.00 O ATOM 742 N GLU 97 -5.776 1.760 9.232 1.00 0.00 N ATOM 743 CA GLU 97 -6.355 1.412 10.516 1.00 0.00 C ATOM 744 C GLU 97 -5.404 1.789 11.661 1.00 0.00 C ATOM 745 O GLU 97 -4.204 2.033 11.466 1.00 0.00 O ATOM 746 CB GLU 97 -6.659 -0.061 10.607 1.00 0.00 C ATOM 747 CG GLU 97 -7.718 -0.511 9.627 1.00 0.00 C ATOM 748 CD GLU 97 -8.229 -1.925 9.907 1.00 0.00 C ATOM 749 OE1 GLU 97 -7.407 -2.806 10.186 1.00 0.00 O ATOM 750 OE2 GLU 97 -9.432 -2.139 9.860 1.00 0.00 O ATOM 751 N ARG 98 -5.980 1.821 12.857 1.00 0.00 N ATOM 752 CA ARG 98 -5.211 1.943 14.098 1.00 0.00 C ATOM 753 C ARG 98 -4.785 0.559 14.562 1.00 0.00 C ATOM 754 O ARG 98 -5.088 -0.442 13.930 1.00 0.00 O ATOM 755 CB ARG 98 -6.069 2.645 15.141 1.00 0.00 C ATOM 756 CG ARG 98 -6.407 4.077 14.728 1.00 0.00 C ATOM 757 CD ARG 98 -7.581 4.588 15.499 1.00 0.00 C ATOM 758 NE ARG 98 -8.813 3.897 15.173 1.00 0.00 N ATOM 759 CZ ARG 98 -10.012 4.311 15.577 1.00 0.00 C ATOM 760 NH1 ARG 98 -11.087 3.766 15.001 1.00 0.00 N ATOM 761 NH2 ARG 98 -10.221 5.229 16.532 1.00 0.00 N ATOM 762 N PHE 99 -4.066 0.501 15.683 1.00 0.00 N ATOM 763 CA PHE 99 -3.612 -0.766 16.228 1.00 0.00 C ATOM 764 C PHE 99 -4.765 -1.629 16.789 1.00 0.00 C ATOM 765 O PHE 99 -4.715 -2.836 16.578 1.00 0.00 O ATOM 766 CB PHE 99 -2.580 -0.559 17.334 1.00 0.00 C ATOM 767 CG PHE 99 -1.887 -1.809 17.842 1.00 0.00 C ATOM 768 CD1 PHE 99 -1.627 -2.888 17.004 1.00 0.00 C ATOM 769 CD2 PHE 99 -1.484 -1.874 19.181 1.00 0.00 C ATOM 770 CE1 PHE 99 -1.062 -4.058 17.505 1.00 0.00 C ATOM 771 CE2 PHE 99 -0.906 -3.042 19.688 1.00 0.00 C ATOM 772 CZ PHE 99 -0.739 -4.160 18.843 1.00 0.00 C ATOM 773 N LEU 100 -5.738 -1.032 17.442 1.00 0.00 N ATOM 774 CA LEU 100 -7.008 -1.667 17.791 1.00 0.00 C ATOM 775 C LEU 100 -7.766 -2.228 16.558 1.00 0.00 C ATOM 776 O LEU 100 -8.245 -3.364 16.621 1.00 0.00 O ATOM 777 CB LEU 100 -7.932 -0.682 18.502 1.00 0.00 C ATOM 778 CG LEU 100 -9.278 -1.168 18.957 1.00 0.00 C ATOM 779 CD1 LEU 100 -9.161 -2.307 19.957 1.00 0.00 C ATOM 780 CD2 LEU 100 -10.119 -0.041 19.529 1.00 0.00 C ATOM 781 N GLU 101 -7.848 -1.480 15.470 1.00 0.00 N ATOM 782 CA GLU 101 -8.391 -1.980 14.205 1.00 0.00 C ATOM 783 C GLU 101 -7.510 -3.051 13.571 1.00 0.00 C ATOM 784 O GLU 101 -8.069 -4.060 13.139 1.00 0.00 O ATOM 785 CB GLU 101 -8.569 -0.838 13.186 1.00 0.00 C ATOM 786 CG GLU 101 -9.518 0.254 13.606 1.00 0.00 C ATOM 787 CD GLU 101 -9.866 1.216 12.502 1.00 0.00 C ATOM 788 OE1 GLU 101 -8.986 2.018 12.090 1.00 0.00 O ATOM 789 OE2 GLU 101 -11.019 1.163 12.034 1.00 0.00 O ATOM 790 N GLU 102 -6.199 -2.811 13.497 1.00 0.00 N ATOM 791 CA GLU 102 -5.197 -3.780 13.072 1.00 0.00 C ATOM 792 C GLU 102 -5.225 -5.093 13.900 1.00 0.00 C ATOM 793 O GLU 102 -5.047 -6.153 13.286 1.00 0.00 O ATOM 794 CB GLU 102 -3.806 -3.190 13.179 1.00 0.00 C ATOM 795 CG GLU 102 -2.721 -4.065 12.595 1.00 0.00 C ATOM 796 CD GLU 102 -1.317 -3.527 12.830 1.00 0.00 C ATOM 797 OE1 GLU 102 -1.107 -2.335 12.565 1.00 0.00 O ATOM 798 OE2 GLU 102 -0.468 -4.273 13.285 1.00 0.00 O ATOM 799 N ALA 103 -5.449 -5.047 15.182 1.00 0.00 N ATOM 800 CA ALA 103 -5.706 -6.282 15.961 1.00 0.00 C ATOM 801 C ALA 103 -6.996 -7.034 15.566 1.00 0.00 C ATOM 802 O ALA 103 -6.958 -8.240 15.310 1.00 0.00 O ATOM 803 CB ALA 103 -5.889 -5.919 17.445 1.00 0.00 C ATOM 804 N LYS 104 -8.125 -6.303 15.495 1.00 0.00 N ATOM 805 CA LYS 104 -9.370 -6.876 14.993 1.00 0.00 C ATOM 806 C LYS 104 -9.386 -7.386 13.539 1.00 0.00 C ATOM 807 O LYS 104 -10.188 -8.284 13.280 1.00 0.00 O ATOM 808 CB LYS 104 -10.546 -5.877 15.173 1.00 0.00 C ATOM 809 CG LYS 104 -10.757 -5.518 16.643 1.00 0.00 C ATOM 810 CD LYS 104 -11.075 -6.713 17.531 1.00 0.00 C ATOM 811 CE LYS 104 -11.057 -6.244 18.993 1.00 0.00 C ATOM 812 NZ LYS 104 -11.423 -7.306 20.006 1.00 0.00 N ATOM 813 N SER 105 -8.576 -6.853 12.630 1.00 0.00 N ATOM 814 CA SER 105 -8.559 -7.349 11.242 1.00 0.00 C ATOM 815 C SER 105 -8.010 -8.770 11.098 1.00 0.00 C ATOM 816 O SER 105 -8.613 -9.547 10.342 1.00 0.00 O ATOM 817 CB SER 105 -7.794 -6.417 10.302 1.00 0.00 C ATOM 818 OG SER 105 -6.395 -6.418 10.539 1.00 0.00 O ATOM 819 N ILE 106 -6.947 -9.105 11.794 1.00 0.00 N ATOM 820 CA ILE 106 -6.457 -10.509 11.862 1.00 0.00 C ATOM 821 C ILE 106 -6.712 -11.081 13.258 1.00 0.00 C ATOM 822 O ILE 106 -5.834 -11.423 14.081 1.00 0.00 O ATOM 823 CB ILE 106 -4.989 -10.556 11.465 1.00 0.00 C ATOM 824 CG1 ILE 106 -4.708 -9.824 10.142 1.00 0.00 C ATOM 825 CG2 ILE 106 -4.449 -11.995 11.343 1.00 0.00 C ATOM 826 CD1 ILE 106 -3.207 -9.697 9.830 1.00 0.00 C ATOM 827 N GLY 107 -8.022 -11.192 13.595 1.00 0.00 N ATOM 828 CA GLY 107 -8.492 -11.973 14.727 1.00 0.00 C ATOM 829 C GLY 107 -8.149 -11.604 16.157 1.00 0.00 C ATOM 830 O GLY 107 -8.575 -12.361 17.060 1.00 0.00 O ATOM 831 N LEU 108 -7.355 -10.583 16.428 1.00 0.00 N ATOM 832 CA LEU 108 -6.690 -10.453 17.735 1.00 0.00 C ATOM 833 C LEU 108 -7.427 -9.470 18.659 1.00 0.00 C ATOM 834 O LEU 108 -8.111 -8.551 18.198 1.00 0.00 O ATOM 835 CB LEU 108 -5.264 -9.968 17.533 1.00 0.00 C ATOM 836 CG LEU 108 -4.328 -10.880 16.741 1.00 0.00 C ATOM 837 CD1 LEU 108 -2.966 -10.242 16.552 1.00 0.00 C ATOM 838 CD2 LEU 108 -4.208 -12.252 17.399 1.00 0.00 C ATOM 839 N ASP 109 -7.289 -9.642 19.972 1.00 0.00 N ATOM 840 CA ASP 109 -7.742 -8.635 20.942 1.00 0.00 C ATOM 841 C ASP 109 -6.672 -7.547 21.090 1.00 0.00 C ATOM 842 O ASP 109 -5.518 -7.874 21.363 1.00 0.00 O ATOM 843 CB ASP 109 -8.028 -9.286 22.286 1.00 0.00 C ATOM 844 CG ASP 109 -8.589 -8.319 23.306 1.00 0.00 C ATOM 845 OD1 ASP 109 -9.651 -7.732 23.048 1.00 0.00 O ATOM 846 OD2 ASP 109 -7.973 -8.133 24.354 1.00 0.00 O ATOM 847 N ASP 110 -7.056 -6.263 20.950 1.00 0.00 N ATOM 848 CA ASP 110 -6.081 -5.174 21.183 1.00 0.00 C ATOM 849 C ASP 110 -6.124 -4.681 22.621 1.00 0.00 C ATOM 850 O ASP 110 -7.144 -4.209 23.097 1.00 0.00 O ATOM 851 CB ASP 110 -6.368 -4.011 20.238 1.00 0.00 C ATOM 852 CG ASP 110 -5.319 -2.915 20.324 1.00 0.00 C ATOM 853 OD1 ASP 110 -4.151 -3.214 20.118 1.00 0.00 O ATOM 854 OD2 ASP 110 -5.695 -1.774 20.620 1.00 0.00 O ATOM 855 N GLN 111 -4.941 -4.508 23.233 1.00 0.00 N ATOM 856 CA GLN 111 -4.914 -4.065 24.617 1.00 0.00 C ATOM 857 C GLN 111 -4.749 -2.543 24.752 1.00 0.00 C ATOM 858 O GLN 111 -4.058 -1.870 23.966 1.00 0.00 O ATOM 859 CB GLN 111 -3.750 -4.697 25.405 1.00 0.00 C ATOM 860 CG GLN 111 -3.907 -6.218 25.496 1.00 0.00 C ATOM 861 CD GLN 111 -2.932 -6.868 26.459 1.00 0.00 C ATOM 862 NE2 GLN 111 -3.391 -7.169 27.663 1.00 0.00 N ATOM 863 OE1 GLN 111 -1.727 -6.863 26.222 1.00 0.00 O ATOM 864 N THR 112 -5.616 -1.987 25.617 1.00 0.00 N ATOM 865 CA THR 112 -5.554 -0.523 25.869 1.00 0.00 C ATOM 866 C THR 112 -4.332 -0.223 26.776 1.00 0.00 C ATOM 867 O THR 112 -3.674 -1.187 27.130 1.00 0.00 O ATOM 868 CB THR 112 -6.844 -0.111 26.558 1.00 0.00 C ATOM 869 CG2 THR 112 -6.976 -0.817 27.919 1.00 0.00 C ATOM 870 OG1 THR 112 -6.907 1.299 26.802 1.00 0.00 O ATOM 871 N ALA 113 -3.802 0.965 26.631 1.00 0.00 N ATOM 872 CA ALA 113 -2.440 1.203 27.142 1.00 0.00 C ATOM 873 C ALA 113 -2.386 1.024 28.660 1.00 0.00 C ATOM 874 O ALA 113 -3.297 0.428 29.278 1.00 0.00 O ATOM 875 CB ALA 113 -1.995 2.636 26.749 1.00 0.00 C ATOM 876 N ILE 114 -1.190 1.180 29.182 1.00 0.00 N ATOM 877 CA ILE 114 -0.932 0.951 30.619 1.00 0.00 C ATOM 878 C ILE 114 -1.081 2.263 31.439 1.00 0.00 C ATOM 879 O ILE 114 -1.295 3.296 30.766 1.00 0.00 O ATOM 880 CB ILE 114 0.525 0.465 30.785 1.00 0.00 C ATOM 881 CG1 ILE 114 0.698 -1.046 30.728 1.00 0.00 C ATOM 882 CG2 ILE 114 1.192 1.085 32.009 1.00 0.00 C ATOM 883 CD1 ILE 114 -0.055 -1.761 31.821 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 235 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 78.13 58.6 58 76.3 76 ARMSMC SECONDARY STRUCTURE . . 84.24 57.1 49 76.6 64 ARMSMC SURFACE . . . . . . . . 78.83 57.4 54 75.0 72 ARMSMC BURIED . . . . . . . . 67.98 75.0 4 100.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.65 52.0 25 73.5 34 ARMSSC1 RELIABLE SIDE CHAINS . 77.65 52.0 25 73.5 34 ARMSSC1 SECONDARY STRUCTURE . . 71.86 57.1 21 75.0 28 ARMSSC1 SURFACE . . . . . . . . 77.65 52.0 25 73.5 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.41 45.5 22 73.3 30 ARMSSC2 RELIABLE SIDE CHAINS . 72.84 50.0 18 78.3 23 ARMSSC2 SECONDARY STRUCTURE . . 82.62 38.9 18 75.0 24 ARMSSC2 SURFACE . . . . . . . . 78.41 45.5 22 73.3 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.31 40.0 10 71.4 14 ARMSSC3 RELIABLE SIDE CHAINS . 55.87 50.0 8 66.7 12 ARMSSC3 SECONDARY STRUCTURE . . 91.31 40.0 10 76.9 13 ARMSSC3 SURFACE . . . . . . . . 91.31 40.0 10 71.4 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.81 25.0 4 57.1 7 ARMSSC4 RELIABLE SIDE CHAINS . 79.81 25.0 4 57.1 7 ARMSSC4 SECONDARY STRUCTURE . . 79.81 25.0 4 66.7 6 ARMSSC4 SURFACE . . . . . . . . 79.81 25.0 4 57.1 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.57 (Number of atoms: 30) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.57 30 76.9 39 CRMSCA CRN = ALL/NP . . . . . 0.2523 CRMSCA SECONDARY STRUCTURE . . 6.83 25 78.1 32 CRMSCA SURFACE . . . . . . . . 7.68 28 75.7 37 CRMSCA BURIED . . . . . . . . 5.77 2 100.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.61 149 76.8 194 CRMSMC SECONDARY STRUCTURE . . 7.02 125 78.1 160 CRMSMC SURFACE . . . . . . . . 7.67 139 75.5 184 CRMSMC BURIED . . . . . . . . 6.78 10 100.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.70 115 73.2 157 CRMSSC RELIABLE SIDE CHAINS . 9.77 103 74.1 139 CRMSSC SECONDARY STRUCTURE . . 9.14 99 76.2 130 CRMSSC SURFACE . . . . . . . . 9.75 113 72.9 155 CRMSSC BURIED . . . . . . . . 6.54 2 100.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.63 235 75.1 313 CRMSALL SECONDARY STRUCTURE . . 8.07 199 77.1 258 CRMSALL SURFACE . . . . . . . . 8.70 225 74.3 303 CRMSALL BURIED . . . . . . . . 6.78 10 100.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.910 1.000 0.500 30 76.9 39 ERRCA SECONDARY STRUCTURE . . 6.327 1.000 0.500 25 78.1 32 ERRCA SURFACE . . . . . . . . 7.032 1.000 0.500 28 75.7 37 ERRCA BURIED . . . . . . . . 5.207 1.000 0.500 2 100.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.960 1.000 0.500 149 76.8 194 ERRMC SECONDARY STRUCTURE . . 6.477 1.000 0.500 125 78.1 160 ERRMC SURFACE . . . . . . . . 7.027 1.000 0.500 139 75.5 184 ERRMC BURIED . . . . . . . . 6.027 1.000 0.500 10 100.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.689 1.000 0.500 115 73.2 157 ERRSC RELIABLE SIDE CHAINS . 8.695 1.000 0.500 103 74.1 139 ERRSC SECONDARY STRUCTURE . . 8.254 1.000 0.500 99 76.2 130 ERRSC SURFACE . . . . . . . . 8.750 1.000 0.500 113 72.9 155 ERRSC BURIED . . . . . . . . 5.253 1.000 0.500 2 100.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.739 1.000 0.500 235 75.1 313 ERRALL SECONDARY STRUCTURE . . 7.286 1.000 0.500 199 77.1 258 ERRALL SURFACE . . . . . . . . 7.815 1.000 0.500 225 74.3 303 ERRALL BURIED . . . . . . . . 6.027 1.000 0.500 10 100.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 9 24 30 39 DISTCA CA (P) 0.00 0.00 7.69 23.08 61.54 39 DISTCA CA (RMS) 0.00 0.00 2.81 3.74 5.98 DISTCA ALL (N) 0 3 12 57 176 235 313 DISTALL ALL (P) 0.00 0.96 3.83 18.21 56.23 313 DISTALL ALL (RMS) 0.00 1.60 2.40 3.82 6.32 DISTALL END of the results output