####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 39 ( 156), selected 39 , name T0586AL396_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 39 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586AL396_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 85 - 123 2.13 2.13 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 86 - 123 1.94 2.16 LCS_AVERAGE: 96.19 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 100 - 122 1.00 2.29 LONGEST_CONTINUOUS_SEGMENT: 23 101 - 123 0.95 2.35 LCS_AVERAGE: 50.62 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 39 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 12 19 39 10 11 12 13 16 20 31 36 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT Q 86 Q 86 12 38 39 10 11 22 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 87 L 87 12 38 39 10 11 12 27 31 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT K 88 K 88 12 38 39 10 11 12 13 26 30 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT K 89 K 89 12 38 39 10 11 12 15 21 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 90 E 90 12 38 39 10 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 91 L 91 12 38 39 10 11 12 27 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT A 92 A 92 12 38 39 10 11 12 15 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT D 93 D 93 16 38 39 10 11 12 19 23 32 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT A 94 A 94 16 38 39 10 11 18 27 31 32 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT I 95 I 95 18 38 39 3 16 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT T 96 T 96 18 38 39 11 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 97 E 97 18 38 39 11 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT R 98 R 98 18 38 39 11 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT F 99 F 99 18 38 39 11 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 100 L 100 23 38 39 11 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 101 E 101 23 38 39 11 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 102 E 102 23 38 39 11 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT A 103 A 103 23 38 39 11 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT K 104 K 104 23 38 39 11 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT S 105 S 105 23 38 39 10 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT I 106 I 106 23 38 39 10 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT G 107 G 107 23 38 39 11 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 108 L 108 23 38 39 11 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT D 109 D 109 23 38 39 8 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT D 110 D 110 23 38 39 13 19 23 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT Q 111 Q 111 23 38 39 13 19 26 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT T 112 T 112 23 38 39 13 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT A 113 A 113 23 38 39 13 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT I 114 I 114 23 38 39 13 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 115 E 115 23 38 39 13 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 116 L 116 23 38 39 13 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 117 L 117 23 38 39 13 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT I 118 I 118 23 38 39 13 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT K 119 K 119 23 38 39 13 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT R 120 R 120 23 38 39 13 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT S 121 S 121 23 38 39 13 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT R 122 R 122 23 38 39 13 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT N 123 N 123 23 38 39 3 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 LCS_AVERAGE LCS_A: 82.27 ( 50.62 96.19 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 19 27 31 32 35 35 37 38 39 39 39 39 39 39 39 39 39 39 39 GDT PERCENT_AT 33.33 48.72 69.23 79.49 82.05 89.74 89.74 94.87 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.17 0.62 0.95 1.21 1.30 1.57 1.57 1.79 1.94 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 GDT RMS_ALL_AT 5.80 3.40 2.65 2.32 2.29 2.17 2.17 2.22 2.16 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 6.760 4 0.078 0.078 6.920 21.071 10.536 LGA Q 86 Q 86 2.221 5 0.019 0.019 3.800 67.857 30.159 LGA L 87 L 87 3.536 4 0.090 0.090 3.661 48.452 24.226 LGA K 88 K 88 5.148 5 0.016 0.016 5.148 34.524 15.344 LGA K 89 K 89 3.581 5 0.030 0.030 3.651 52.143 23.175 LGA E 90 E 90 1.535 5 0.047 0.047 2.116 77.381 34.392 LGA L 91 L 91 2.856 4 0.027 0.027 2.856 68.929 34.464 LGA A 92 A 92 2.841 1 0.016 0.016 2.841 60.952 48.762 LGA D 93 D 93 3.905 4 0.030 0.030 4.805 43.810 21.905 LGA A 94 A 94 3.771 1 0.048 0.048 4.348 45.119 36.095 LGA I 95 I 95 1.739 4 0.084 0.084 1.997 75.000 37.500 LGA T 96 T 96 0.971 3 0.047 0.047 1.352 83.690 47.823 LGA E 97 E 97 1.734 5 0.030 0.030 1.734 75.000 33.333 LGA R 98 R 98 1.512 7 0.008 0.008 1.595 77.143 28.052 LGA F 99 F 99 0.556 7 0.024 0.024 0.879 92.857 33.766 LGA L 100 L 100 1.241 4 0.076 0.076 1.241 83.690 41.845 LGA E 101 E 101 1.102 5 0.026 0.026 1.143 85.952 38.201 LGA E 102 E 102 0.403 5 0.018 0.018 0.576 95.238 42.328 LGA A 103 A 103 0.815 1 0.066 0.066 1.366 85.952 68.762 LGA K 104 K 104 1.133 5 0.068 0.068 1.133 83.690 37.196 LGA S 105 S 105 0.895 2 0.112 0.112 1.402 83.690 55.794 LGA I 106 I 106 1.093 4 0.047 0.047 1.362 83.690 41.845 LGA G 107 G 107 1.471 0 0.080 0.080 1.471 81.429 81.429 LGA L 108 L 108 1.215 4 0.196 0.196 2.136 77.262 38.631 LGA D 109 D 109 1.358 4 0.037 0.037 1.358 81.429 40.714 LGA D 110 D 110 1.879 4 0.026 0.026 1.879 72.857 36.429 LGA Q 111 Q 111 1.505 5 0.050 0.050 1.551 77.143 34.286 LGA T 112 T 112 0.356 3 0.057 0.057 0.559 95.238 54.422 LGA A 113 A 113 1.119 1 0.019 0.019 1.155 83.690 66.952 LGA I 114 I 114 1.491 4 0.014 0.014 1.491 81.429 40.714 LGA E 115 E 115 0.971 5 0.017 0.017 0.971 90.476 40.212 LGA L 116 L 116 0.856 4 0.007 0.007 1.012 90.595 45.298 LGA L 117 L 117 1.215 4 0.021 0.021 1.215 88.214 44.107 LGA I 118 I 118 1.024 4 0.020 0.020 1.024 88.214 44.107 LGA K 119 K 119 1.127 5 0.033 0.033 1.127 88.214 39.206 LGA R 120 R 120 1.009 7 0.015 0.015 1.009 88.214 32.078 LGA S 121 S 121 0.765 2 0.017 0.017 0.765 90.476 60.317 LGA R 122 R 122 0.894 7 0.168 0.168 1.212 88.214 32.078 LGA N 123 N 123 1.294 4 0.424 0.424 5.807 57.619 28.810 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 39 156 156 100.00 313 156 49.84 39 SUMMARY(RMSD_GDC): 2.129 2.034 2.034 75.553 39.623 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 39 39 4.0 37 1.79 80.769 88.475 1.953 LGA_LOCAL RMSD: 1.795 Number of atoms: 37 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.215 Number of assigned atoms: 39 Std_ASGN_ATOMS RMSD: 2.129 Standard rmsd on all 39 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.150386 * X + 0.531579 * Y + 0.833551 * Z + -64.540680 Y_new = -0.720100 * X + -0.518795 * Y + 0.460768 * Z + 41.239346 Z_new = 0.677377 * X + -0.669533 * Y + 0.304771 * Z + 7.988528 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.364915 -0.744192 -1.143628 [DEG: -78.2038 -42.6390 -65.5250 ] ZXZ: 2.075770 1.261099 2.350371 [DEG: 118.9328 72.2556 134.6663 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586AL396_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586AL396_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 39 39 4.0 37 1.79 88.475 2.13 REMARK ---------------------------------------------------------- MOLECULE T0586AL396_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2du9_A ATOM 293 N ASP 85 -3.194 19.436 19.834 1.00 0.00 N ATOM 294 CA ASP 85 -4.413 18.752 19.454 1.00 0.00 C ATOM 295 C ASP 85 -4.372 18.240 18.008 1.00 0.00 C ATOM 296 O ASP 85 -4.587 17.053 17.760 1.00 0.00 O ATOM 297 N GLN 86 -4.097 19.130 17.060 1.00 0.00 N ATOM 298 CA GLN 86 -4.039 18.750 15.646 1.00 0.00 C ATOM 299 C GLN 86 -2.923 17.747 15.348 1.00 0.00 C ATOM 300 O GLN 86 -3.054 16.904 14.460 1.00 0.00 O ATOM 301 N LEU 87 -1.817 17.843 16.077 1.00 0.00 N ATOM 302 CA LEU 87 -0.702 16.936 15.851 1.00 0.00 C ATOM 303 C LEU 87 -0.955 15.565 16.488 1.00 0.00 C ATOM 304 O LEU 87 -0.456 14.547 16.012 1.00 0.00 O ATOM 305 N LYS 88 -1.740 15.538 17.559 1.00 0.00 N ATOM 306 CA LYS 88 -2.061 14.276 18.211 1.00 0.00 C ATOM 307 C LYS 88 -3.053 13.527 17.326 1.00 0.00 C ATOM 308 O LYS 88 -2.972 12.309 17.166 1.00 0.00 O ATOM 309 N LYS 89 -3.979 14.273 16.738 1.00 0.00 N ATOM 310 CA LYS 89 -4.972 13.677 15.870 1.00 0.00 C ATOM 311 C LYS 89 -4.272 13.081 14.658 1.00 0.00 C ATOM 312 O LYS 89 -4.646 12.009 14.178 1.00 0.00 O ATOM 313 N GLU 90 -3.248 13.774 14.173 1.00 0.00 N ATOM 314 CA GLU 90 -2.512 13.308 13.002 1.00 0.00 C ATOM 315 C GLU 90 -1.741 12.050 13.338 1.00 0.00 C ATOM 316 O GLU 90 -1.747 11.094 12.574 1.00 0.00 O ATOM 317 N LEU 91 -1.071 12.060 14.483 1.00 0.00 N ATOM 318 CA LEU 91 -0.313 10.903 14.946 1.00 0.00 C ATOM 319 C LEU 91 -1.233 9.678 15.032 1.00 0.00 C ATOM 320 O LEU 91 -0.862 8.584 14.631 1.00 0.00 O ATOM 321 N ALA 92 -2.431 9.878 15.561 1.00 0.00 N ATOM 322 CA ALA 92 -3.395 8.801 15.713 1.00 0.00 C ATOM 323 C ALA 92 -3.781 8.225 14.359 1.00 0.00 C ATOM 324 O ALA 92 -3.804 7.007 14.175 1.00 0.00 O ATOM 325 N ASP 93 -4.062 9.114 13.408 1.00 0.00 N ATOM 326 CA ASP 93 -4.476 8.715 12.064 1.00 0.00 C ATOM 327 C ASP 93 -3.411 7.957 11.299 1.00 0.00 C ATOM 328 O ASP 93 -3.715 7.060 10.519 1.00 0.00 O ATOM 329 N ALA 94 -2.161 8.304 11.526 1.00 0.00 N ATOM 330 CA ALA 94 -1.097 7.636 10.816 1.00 0.00 C ATOM 331 C ALA 94 -0.509 6.434 11.555 1.00 0.00 C ATOM 332 O ALA 94 -0.093 5.461 10.923 1.00 0.00 O ATOM 333 N ILE 95 -0.509 6.459 12.886 1.00 0.00 N ATOM 334 CA ILE 95 0.064 5.338 13.634 1.00 0.00 C ATOM 335 C ILE 95 -0.903 4.477 14.431 1.00 0.00 C ATOM 336 O ILE 95 -0.671 3.291 14.614 1.00 0.00 O ATOM 337 N THR 96 -1.991 5.054 14.904 1.00 0.00 N ATOM 338 CA THR 96 -2.919 4.288 15.713 1.00 0.00 C ATOM 339 C THR 96 -4.043 3.618 14.941 1.00 0.00 C ATOM 340 O THR 96 -4.334 2.443 15.167 1.00 0.00 O ATOM 341 N GLU 97 -4.660 4.359 14.028 1.00 0.00 N ATOM 342 CA GLU 97 -5.762 3.841 13.216 1.00 0.00 C ATOM 343 C GLU 97 -5.434 2.523 12.503 1.00 0.00 C ATOM 344 O GLU 97 -6.174 1.554 12.608 1.00 0.00 O ATOM 345 N ARG 98 -4.317 2.475 11.769 1.00 0.00 N ATOM 346 CA ARG 98 -3.910 1.268 11.045 1.00 0.00 C ATOM 347 C ARG 98 -3.730 0.073 11.974 1.00 0.00 C ATOM 348 O ARG 98 -4.034 -1.063 11.606 1.00 0.00 O ATOM 349 N PHE 99 -3.214 0.340 13.169 1.00 0.00 N ATOM 350 CA PHE 99 -2.985 -0.704 14.159 1.00 0.00 C ATOM 351 C PHE 99 -4.337 -1.234 14.623 1.00 0.00 C ATOM 352 O PHE 99 -4.536 -2.443 14.731 1.00 0.00 O ATOM 353 N LEU 100 -5.263 -0.320 14.891 1.00 0.00 N ATOM 354 CA LEU 100 -6.572 -0.714 15.352 1.00 0.00 C ATOM 355 C LEU 100 -7.334 -1.526 14.321 1.00 0.00 C ATOM 356 O LEU 100 -7.857 -2.586 14.648 1.00 0.00 O ATOM 357 N GLU 101 -7.404 -1.034 13.089 1.00 0.00 N ATOM 358 CA GLU 101 -8.123 -1.736 12.029 1.00 0.00 C ATOM 359 C GLU 101 -7.560 -3.115 11.756 1.00 0.00 C ATOM 360 O GLU 101 -8.298 -4.048 11.489 1.00 0.00 O ATOM 361 N GLU 102 -6.245 -3.248 11.802 1.00 0.00 N ATOM 362 CA GLU 102 -5.661 -4.547 11.556 1.00 0.00 C ATOM 363 C GLU 102 -5.889 -5.473 12.763 1.00 0.00 C ATOM 364 O GLU 102 -6.075 -6.688 12.596 1.00 0.00 O ATOM 365 N ALA 103 -5.845 -4.896 13.969 1.00 0.00 N ATOM 366 CA ALA 103 -6.063 -5.648 15.196 1.00 0.00 C ATOM 367 C ALA 103 -7.485 -6.206 15.224 1.00 0.00 C ATOM 368 O ALA 103 -7.703 -7.306 15.699 1.00 0.00 O ATOM 369 N LYS 104 -8.445 -5.436 14.728 1.00 0.00 N ATOM 370 CA LYS 104 -9.836 -5.869 14.719 1.00 0.00 C ATOM 371 C LYS 104 -9.959 -6.984 13.704 1.00 0.00 C ATOM 372 O LYS 104 -10.526 -8.039 13.974 1.00 0.00 O ATOM 373 N SER 105 -9.394 -6.727 12.537 1.00 0.00 N ATOM 374 CA SER 105 -9.387 -7.669 11.441 1.00 0.00 C ATOM 375 C SER 105 -8.819 -9.018 11.862 1.00 0.00 C ATOM 376 O SER 105 -9.344 -10.049 11.476 1.00 0.00 O ATOM 377 N ILE 106 -7.757 -9.013 12.653 1.00 0.00 N ATOM 378 CA ILE 106 -7.132 -10.253 13.104 1.00 0.00 C ATOM 379 C ILE 106 -7.718 -10.772 14.421 1.00 0.00 C ATOM 380 O ILE 106 -7.260 -11.781 14.962 1.00 0.00 O ATOM 381 N GLY 107 -8.728 -10.075 14.938 1.00 0.00 N ATOM 382 CA GLY 107 -9.363 -10.500 16.171 1.00 0.00 C ATOM 383 C GLY 107 -8.517 -10.490 17.435 1.00 0.00 C ATOM 384 O GLY 107 -8.667 -11.377 18.284 1.00 0.00 O ATOM 385 N LEU 108 -7.634 -9.500 17.574 1.00 0.00 N ATOM 386 CA LEU 108 -6.799 -9.381 18.774 1.00 0.00 C ATOM 387 C LEU 108 -7.635 -8.759 19.888 1.00 0.00 C ATOM 388 O LEU 108 -8.643 -8.098 19.631 1.00 0.00 O ATOM 389 N ASP 109 -7.192 -8.967 21.120 1.00 0.00 N ATOM 390 CA ASP 109 -7.868 -8.431 22.294 1.00 0.00 C ATOM 391 C ASP 109 -7.116 -7.187 22.738 1.00 0.00 C ATOM 392 O ASP 109 -5.947 -7.011 22.397 1.00 0.00 O ATOM 393 N ASP 110 -7.783 -6.336 23.510 1.00 0.00 N ATOM 394 CA ASP 110 -7.146 -5.133 24.021 1.00 0.00 C ATOM 395 C ASP 110 -5.938 -5.512 24.868 1.00 0.00 C ATOM 396 O ASP 110 -4.903 -4.862 24.808 1.00 0.00 O ATOM 397 N GLN 111 -6.067 -6.574 25.654 1.00 0.00 N ATOM 398 CA GLN 111 -4.973 -7.007 26.513 1.00 0.00 C ATOM 399 C GLN 111 -3.774 -7.482 25.702 1.00 0.00 C ATOM 400 O GLN 111 -2.627 -7.236 26.077 1.00 0.00 O ATOM 401 N THR 112 -4.047 -8.161 24.591 1.00 0.00 N ATOM 402 CA THR 112 -2.990 -8.688 23.726 1.00 0.00 C ATOM 403 C THR 112 -2.251 -7.569 23.013 1.00 0.00 C ATOM 404 O THR 112 -1.063 -7.684 22.744 1.00 0.00 O ATOM 405 N ALA 113 -2.960 -6.488 22.697 1.00 0.00 N ATOM 406 CA ALA 113 -2.325 -5.358 22.033 1.00 0.00 C ATOM 407 C ALA 113 -1.438 -4.634 23.029 1.00 0.00 C ATOM 408 O ALA 113 -0.310 -4.270 22.712 1.00 0.00 O ATOM 409 N ILE 114 -1.947 -4.436 24.238 1.00 0.00 N ATOM 410 CA ILE 114 -1.165 -3.769 25.263 1.00 0.00 C ATOM 411 C ILE 114 0.104 -4.548 25.575 1.00 0.00 C ATOM 412 O ILE 114 1.160 -3.954 25.767 1.00 0.00 O ATOM 413 N GLU 115 0.003 -5.875 25.616 1.00 0.00 N ATOM 414 CA GLU 115 1.159 -6.721 25.912 1.00 0.00 C ATOM 415 C GLU 115 2.218 -6.608 24.825 1.00 0.00 C ATOM 416 O GLU 115 3.406 -6.523 25.128 1.00 0.00 O ATOM 417 N LEU 116 1.789 -6.623 23.567 1.00 0.00 N ATOM 418 CA LEU 116 2.718 -6.492 22.445 1.00 0.00 C ATOM 419 C LEU 116 3.393 -5.126 22.502 1.00 0.00 C ATOM 420 O LEU 116 4.595 -5.005 22.292 1.00 0.00 O ATOM 421 N LEU 117 2.606 -4.096 22.785 1.00 0.00 N ATOM 422 CA LEU 117 3.147 -2.748 22.893 1.00 0.00 C ATOM 423 C LEU 117 4.268 -2.754 23.925 1.00 0.00 C ATOM 424 O LEU 117 5.360 -2.246 23.683 1.00 0.00 O ATOM 425 N ILE 118 3.985 -3.340 25.081 1.00 0.00 N ATOM 426 CA ILE 118 4.969 -3.404 26.148 1.00 0.00 C ATOM 427 C ILE 118 6.201 -4.210 25.763 1.00 0.00 C ATOM 428 O ILE 118 7.321 -3.802 26.059 1.00 0.00 O ATOM 429 N LYS 119 5.997 -5.338 25.086 1.00 0.00 N ATOM 430 CA LYS 119 7.115 -6.183 24.675 1.00 0.00 C ATOM 431 C LYS 119 8.048 -5.413 23.763 1.00 0.00 C ATOM 432 O LYS 119 9.254 -5.376 23.989 1.00 0.00 O ATOM 433 N ARG 120 7.486 -4.813 22.720 1.00 0.00 N ATOM 434 CA ARG 120 8.281 -4.036 21.785 1.00 0.00 C ATOM 435 C ARG 120 8.977 -2.893 22.514 1.00 0.00 C ATOM 436 O ARG 120 10.147 -2.620 22.274 1.00 0.00 O ATOM 437 N SER 121 8.262 -2.228 23.412 1.00 0.00 N ATOM 438 CA SER 121 8.862 -1.125 24.144 1.00 0.00 C ATOM 439 C SER 121 10.071 -1.578 24.946 1.00 0.00 C ATOM 440 O SER 121 11.009 -0.806 25.129 1.00 0.00 O ATOM 441 N ARG 122 10.052 -2.814 25.439 1.00 0.00 N ATOM 442 CA ARG 122 11.185 -3.311 26.212 1.00 0.00 C ATOM 443 C ARG 122 12.386 -3.624 25.327 1.00 0.00 C ATOM 444 O ARG 122 13.527 -3.421 25.742 1.00 0.00 O ATOM 445 N ASN 123 12.138 -4.119 24.115 1.00 0.00 N ATOM 446 CA ASN 123 13.230 -4.450 23.201 1.00 0.00 C ATOM 447 C ASN 123 13.936 -3.166 22.796 1.00 0.00 C ATOM 448 O ASN 123 15.026 -3.186 22.220 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 156 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 19.99 93.4 76 100.0 76 ARMSMC SECONDARY STRUCTURE . . 10.80 98.4 64 100.0 64 ARMSMC SURFACE . . . . . . . . 20.46 93.1 72 100.0 72 ARMSMC BURIED . . . . . . . . 7.99 100.0 4 100.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 34 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 24 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.13 (Number of atoms: 39) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.13 39 100.0 39 CRMSCA CRN = ALL/NP . . . . . 0.0546 CRMSCA SECONDARY STRUCTURE . . 2.03 32 100.0 32 CRMSCA SURFACE . . . . . . . . 2.17 37 100.0 37 CRMSCA BURIED . . . . . . . . 1.14 2 100.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.04 156 80.4 194 CRMSMC SECONDARY STRUCTURE . . 1.89 128 80.0 160 CRMSMC SURFACE . . . . . . . . 2.08 148 80.4 184 CRMSMC BURIED . . . . . . . . 1.19 8 80.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 157 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 139 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 130 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 155 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.04 156 49.8 313 CRMSALL SECONDARY STRUCTURE . . 1.89 128 49.6 258 CRMSALL SURFACE . . . . . . . . 2.08 148 48.8 303 CRMSALL BURIED . . . . . . . . 1.19 8 80.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.798 1.000 0.500 39 100.0 39 ERRCA SECONDARY STRUCTURE . . 1.729 1.000 0.500 32 100.0 32 ERRCA SURFACE . . . . . . . . 1.834 1.000 0.500 37 100.0 37 ERRCA BURIED . . . . . . . . 1.133 1.000 0.500 2 100.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.705 1.000 0.500 156 80.4 194 ERRMC SECONDARY STRUCTURE . . 1.591 1.000 0.500 128 80.0 160 ERRMC SURFACE . . . . . . . . 1.734 1.000 0.500 148 80.4 184 ERRMC BURIED . . . . . . . . 1.155 1.000 0.500 8 80.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 157 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 139 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 130 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 155 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.705 1.000 0.500 156 49.8 313 ERRALL SECONDARY STRUCTURE . . 1.591 1.000 0.500 128 49.6 258 ERRALL SURFACE . . . . . . . . 1.734 1.000 0.500 148 48.8 303 ERRALL BURIED . . . . . . . . 1.155 1.000 0.500 8 80.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 8 28 34 38 39 39 39 DISTCA CA (P) 20.51 71.79 87.18 97.44 100.00 39 DISTCA CA (RMS) 0.73 1.29 1.56 1.97 2.13 DISTCA ALL (N) 43 118 139 152 156 156 313 DISTALL ALL (P) 13.74 37.70 44.41 48.56 49.84 313 DISTALL ALL (RMS) 0.72 1.27 1.54 1.87 2.04 DISTALL END of the results output