####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 38 ( 152), selected 38 , name T0586AL285_1-D2 # Molecule2: number of CA atoms 39 ( 313), selected 38 , name T0586-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0586AL285_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 85 - 122 1.63 1.63 LCS_AVERAGE: 97.44 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 85 - 122 1.63 1.63 LCS_AVERAGE: 97.44 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 85 - 109 0.89 4.51 LCS_AVERAGE: 61.47 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 38 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 85 D 85 25 38 38 14 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT Q 86 Q 86 25 38 38 13 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT L 87 L 87 25 38 38 10 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT K 88 K 88 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT K 89 K 89 25 38 38 13 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT E 90 E 90 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT L 91 L 91 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT A 92 A 92 25 38 38 16 23 24 31 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT D 93 D 93 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT A 94 A 94 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT I 95 I 95 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT T 96 T 96 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT E 97 E 97 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT R 98 R 98 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT F 99 F 99 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT L 100 L 100 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT E 101 E 101 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT E 102 E 102 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT A 103 A 103 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT K 104 K 104 25 38 38 11 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT S 105 S 105 25 38 38 13 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT I 106 I 106 25 38 38 4 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT G 107 G 107 25 38 38 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT L 108 L 108 25 38 38 13 22 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT D 109 D 109 25 38 38 13 17 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT D 110 D 110 22 38 38 13 17 23 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT Q 111 Q 111 22 38 38 13 17 23 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT T 112 T 112 22 38 38 13 17 23 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT A 113 A 113 22 38 38 13 17 23 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT I 114 I 114 22 38 38 11 17 23 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT E 115 E 115 22 38 38 13 17 23 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT L 116 L 116 22 38 38 13 17 23 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT L 117 L 117 22 38 38 13 17 23 32 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT I 118 I 118 22 38 38 13 17 23 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT K 119 K 119 22 38 38 11 17 23 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT R 120 R 120 22 38 38 11 17 22 29 36 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT S 121 S 121 22 38 38 13 17 23 31 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT R 122 R 122 22 38 38 13 17 23 32 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_AVERAGE LCS_A: 85.45 ( 61.47 97.44 97.44 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 23 24 33 37 38 38 38 38 38 38 38 38 38 38 38 38 38 38 38 GDT PERCENT_AT 41.03 58.97 61.54 84.62 94.87 97.44 97.44 97.44 97.44 97.44 97.44 97.44 97.44 97.44 97.44 97.44 97.44 97.44 97.44 97.44 GDT RMS_LOCAL 0.32 0.53 0.68 1.46 1.59 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 GDT RMS_ALL_AT 5.78 6.02 5.36 1.72 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 1.63 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 85 D 85 1.985 4 0.023 0.023 2.189 72.976 36.488 LGA Q 86 Q 86 2.485 5 0.043 0.043 2.485 68.810 30.582 LGA L 87 L 87 1.797 4 0.082 0.082 1.797 77.143 38.571 LGA K 88 K 88 1.611 5 0.054 0.054 2.023 75.238 33.439 LGA K 89 K 89 2.416 5 0.054 0.054 2.416 70.833 31.481 LGA E 90 E 90 1.406 5 0.018 0.018 1.406 85.952 38.201 LGA L 91 L 91 1.366 4 0.032 0.032 1.820 81.548 40.774 LGA A 92 A 92 2.243 1 0.039 0.039 2.243 68.810 55.048 LGA D 93 D 93 1.715 4 0.022 0.022 1.715 79.405 39.702 LGA A 94 A 94 1.156 1 0.015 0.015 1.312 83.690 66.952 LGA I 95 I 95 1.859 4 0.035 0.035 1.859 75.000 37.500 LGA T 96 T 96 1.668 3 0.043 0.043 1.668 79.286 45.306 LGA E 97 E 97 1.078 5 0.014 0.014 1.078 88.214 39.206 LGA R 98 R 98 1.335 7 0.028 0.028 1.525 81.548 29.654 LGA F 99 F 99 2.052 7 0.038 0.038 2.052 72.976 26.537 LGA L 100 L 100 1.621 4 0.065 0.065 1.621 79.286 39.643 LGA E 101 E 101 1.266 5 0.019 0.019 1.453 83.690 37.196 LGA E 102 E 102 1.528 5 0.019 0.019 1.528 81.548 36.243 LGA A 103 A 103 1.145 1 0.030 0.030 1.145 88.214 70.571 LGA K 104 K 104 1.657 5 0.017 0.017 1.657 79.405 35.291 LGA S 105 S 105 1.981 2 0.041 0.041 1.981 72.857 48.571 LGA I 106 I 106 1.289 4 0.061 0.061 1.733 79.286 39.643 LGA G 107 G 107 0.995 0 0.119 0.119 1.143 85.952 85.952 LGA L 108 L 108 0.850 4 0.041 0.041 0.981 90.476 45.238 LGA D 109 D 109 1.645 4 0.055 0.055 1.645 77.143 38.571 LGA D 110 D 110 1.709 4 0.037 0.037 1.729 75.000 37.500 LGA Q 111 Q 111 1.758 5 0.099 0.099 1.800 75.000 33.333 LGA T 112 T 112 0.860 3 0.032 0.032 1.070 92.976 53.129 LGA A 113 A 113 0.505 1 0.024 0.024 1.183 90.595 72.476 LGA I 114 I 114 1.718 4 0.046 0.046 1.718 79.286 39.643 LGA E 115 E 115 0.915 5 0.056 0.056 1.000 95.238 42.328 LGA L 116 L 116 0.852 4 0.040 0.040 1.372 88.333 44.167 LGA L 117 L 117 1.612 4 0.007 0.007 1.856 75.000 37.500 LGA I 118 I 118 1.050 4 0.030 0.030 1.101 85.952 42.976 LGA K 119 K 119 1.092 5 0.022 0.022 1.915 81.786 36.349 LGA R 120 R 120 2.577 7 0.068 0.068 3.198 59.286 21.558 LGA S 121 S 121 2.431 2 0.129 0.129 3.178 61.071 40.714 LGA R 122 R 122 1.744 7 0.650 0.650 3.262 63.214 22.987 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 38 152 152 100.00 305 152 49.84 39 SUMMARY(RMSD_GDC): 1.630 1.503 1.503 76.975 40.796 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 38 39 4.0 38 1.63 84.615 90.655 2.197 LGA_LOCAL RMSD: 1.630 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.630 Number of assigned atoms: 38 Std_ASGN_ATOMS RMSD: 1.630 Standard rmsd on all 38 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.040615 * X + -0.997879 * Y + 0.050877 * Z + 65.289429 Y_new = -0.164830 * X + -0.056913 * Y + -0.984679 * Z + 38.514072 Z_new = 0.985485 * X + 0.031606 * Y + -0.166792 * Z + -6.427344 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.329204 -1.400210 2.954317 [DEG: -76.1578 -80.2262 169.2699 ] ZXZ: 0.051623 1.738371 1.538735 [DEG: 2.9578 99.6013 88.1630 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0586AL285_1-D2 REMARK 2: T0586-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0586AL285_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 38 39 4.0 38 1.63 90.655 1.63 REMARK ---------------------------------------------------------- MOLECULE T0586AL285_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3by6A ATOM 301 N ASP 85 2.877 20.407 15.034 1.00 0.00 N ATOM 302 CA ASP 85 3.224 19.217 15.770 1.00 0.00 C ATOM 303 C ASP 85 1.971 18.434 16.216 1.00 0.00 C ATOM 304 O ASP 85 1.951 17.196 16.112 1.00 0.00 O ATOM 305 N GLN 86 0.943 19.156 16.706 1.00 0.00 N ATOM 306 CA GLN 86 -0.298 18.514 17.164 1.00 0.00 C ATOM 307 C GLN 86 -1.053 17.913 16.010 1.00 0.00 C ATOM 308 O GLN 86 -1.571 16.818 16.115 1.00 0.00 O ATOM 309 N LEU 87 -1.144 18.642 14.907 1.00 0.00 N ATOM 310 CA LEU 87 -1.763 18.073 13.714 1.00 0.00 C ATOM 311 C LEU 87 -0.993 16.822 13.224 1.00 0.00 C ATOM 312 O LEU 87 -1.585 15.900 12.648 1.00 0.00 O ATOM 313 N LYS 88 0.321 16.813 13.436 1.00 0.00 N ATOM 314 CA LYS 88 1.151 15.681 12.997 1.00 0.00 C ATOM 315 C LYS 88 0.857 14.443 13.824 1.00 0.00 C ATOM 316 O LYS 88 0.580 13.361 13.290 1.00 0.00 O ATOM 317 N LYS 89 0.906 14.630 15.142 1.00 0.00 N ATOM 318 CA LYS 89 0.467 13.606 16.100 1.00 0.00 C ATOM 319 C LYS 89 -0.901 13.069 15.803 1.00 0.00 C ATOM 320 O LYS 89 -1.146 11.886 16.029 1.00 0.00 O ATOM 321 N GLU 90 -1.797 13.907 15.303 1.00 0.00 N ATOM 322 CA GLU 90 -3.151 13.446 14.976 1.00 0.00 C ATOM 323 C GLU 90 -3.168 12.538 13.774 1.00 0.00 C ATOM 324 O GLU 90 -3.897 11.547 13.761 1.00 0.00 O ATOM 325 N LEU 91 -2.370 12.879 12.764 1.00 0.00 N ATOM 326 CA LEU 91 -2.185 12.010 11.603 1.00 0.00 C ATOM 327 C LEU 91 -1.721 10.630 12.071 1.00 0.00 C ATOM 328 O LEU 91 -2.200 9.623 11.605 1.00 0.00 O ATOM 329 N ALA 92 -0.775 10.637 12.997 1.00 0.00 N ATOM 330 CA ALA 92 -0.127 9.457 13.532 1.00 0.00 C ATOM 331 C ALA 92 -1.057 8.617 14.413 1.00 0.00 C ATOM 332 O ALA 92 -1.017 7.390 14.392 1.00 0.00 O ATOM 333 N ASP 93 -1.842 9.313 15.235 1.00 0.00 N ATOM 334 CA ASP 93 -2.861 8.714 16.070 1.00 0.00 C ATOM 335 C ASP 93 -3.946 8.086 15.223 1.00 0.00 C ATOM 336 O ASP 93 -4.463 7.039 15.578 1.00 0.00 O ATOM 337 N ALA 94 -4.315 8.714 14.124 1.00 0.00 N ATOM 338 CA ALA 94 -5.259 8.093 13.213 1.00 0.00 C ATOM 339 C ALA 94 -4.691 6.762 12.695 1.00 0.00 C ATOM 340 O ALA 94 -5.418 5.758 12.549 1.00 0.00 O ATOM 341 N ILE 95 -3.386 6.759 12.392 1.00 0.00 N ATOM 342 CA ILE 95 -2.717 5.552 11.864 1.00 0.00 C ATOM 343 C ILE 95 -2.661 4.497 12.941 1.00 0.00 C ATOM 344 O ILE 95 -2.967 3.366 12.673 1.00 0.00 O ATOM 345 N THR 96 -2.234 4.884 14.144 1.00 0.00 N ATOM 346 CA THR 96 -2.290 3.984 15.303 1.00 0.00 C ATOM 347 C THR 96 -3.649 3.304 15.438 1.00 0.00 C ATOM 348 O THR 96 -3.719 2.105 15.658 1.00 0.00 O ATOM 349 N GLU 97 -4.711 4.098 15.348 1.00 0.00 N ATOM 350 CA GLU 97 -6.069 3.620 15.511 1.00 0.00 C ATOM 351 C GLU 97 -6.398 2.592 14.438 1.00 0.00 C ATOM 352 O GLU 97 -6.929 1.541 14.715 1.00 0.00 O ATOM 353 N ARG 98 -6.042 2.906 13.203 1.00 0.00 N ATOM 354 CA ARG 98 -6.285 2.028 12.063 1.00 0.00 C ATOM 355 C ARG 98 -5.514 0.683 12.087 1.00 0.00 C ATOM 356 O ARG 98 -6.065 -0.338 11.714 1.00 0.00 O ATOM 357 N PHE 99 -4.245 0.684 12.484 1.00 0.00 N ATOM 358 CA PHE 99 -3.476 -0.567 12.588 1.00 0.00 C ATOM 359 C PHE 99 -4.048 -1.472 13.689 1.00 0.00 C ATOM 360 O PHE 99 -4.209 -2.684 13.494 1.00 0.00 O ATOM 361 N LEU 100 -4.381 -0.875 14.828 1.00 0.00 N ATOM 362 CA LEU 100 -4.969 -1.625 15.914 1.00 0.00 C ATOM 363 C LEU 100 -6.323 -2.210 15.479 1.00 0.00 C ATOM 364 O LEU 100 -6.596 -3.399 15.714 1.00 0.00 O ATOM 365 N GLU 101 -7.151 -1.403 14.812 1.00 0.00 N ATOM 366 CA GLU 101 -8.409 -1.956 14.293 1.00 0.00 C ATOM 367 C GLU 101 -8.186 -3.171 13.381 1.00 0.00 C ATOM 368 O GLU 101 -8.924 -4.132 13.441 1.00 0.00 O ATOM 369 N GLU 102 -7.172 -3.106 12.529 1.00 0.00 N ATOM 370 CA GLU 102 -6.937 -4.138 11.526 1.00 0.00 C ATOM 371 C GLU 102 -6.329 -5.388 12.177 1.00 0.00 C ATOM 372 O GLU 102 -6.601 -6.517 11.776 1.00 0.00 O ATOM 373 N ALA 103 -5.540 -5.160 13.220 1.00 0.00 N ATOM 374 CA ALA 103 -5.070 -6.211 14.101 1.00 0.00 C ATOM 375 C ALA 103 -6.214 -6.921 14.829 1.00 0.00 C ATOM 376 O ALA 103 -6.270 -8.136 14.791 1.00 0.00 O ATOM 377 N LYS 104 -7.109 -6.221 15.524 1.00 0.00 N ATOM 378 CA LYS 104 -8.169 -6.985 16.188 1.00 0.00 C ATOM 379 C LYS 104 -9.024 -7.669 15.118 1.00 0.00 C ATOM 380 O LYS 104 -9.485 -8.773 15.320 1.00 0.00 O ATOM 381 N SER 105 -9.170 -7.048 13.960 1.00 0.00 N ATOM 382 CA SER 105 -9.882 -7.691 12.851 1.00 0.00 C ATOM 383 C SER 105 -9.136 -8.926 12.290 1.00 0.00 C ATOM 384 O SER 105 -9.743 -9.858 11.760 1.00 0.00 O ATOM 385 N ILE 106 -7.816 -8.943 12.422 1.00 0.00 N ATOM 386 CA ILE 106 -7.008 -10.069 11.967 1.00 0.00 C ATOM 387 C ILE 106 -7.086 -11.229 12.961 1.00 0.00 C ATOM 388 O ILE 106 -6.451 -12.277 12.761 1.00 0.00 O ATOM 389 N GLY 107 -7.843 -11.043 14.036 1.00 0.00 N ATOM 390 CA GLY 107 -7.962 -12.066 15.072 1.00 0.00 C ATOM 391 C GLY 107 -7.109 -11.817 16.307 1.00 0.00 C ATOM 392 O GLY 107 -7.183 -12.603 17.236 1.00 0.00 O ATOM 393 N LEU 108 -6.304 -10.743 16.353 1.00 0.00 N ATOM 394 CA LEU 108 -5.524 -10.462 17.575 1.00 0.00 C ATOM 395 C LEU 108 -6.457 -9.799 18.606 1.00 0.00 C ATOM 396 O LEU 108 -7.033 -8.735 18.343 1.00 0.00 O ATOM 397 N ASP 109 -6.598 -10.425 19.764 1.00 0.00 N ATOM 398 CA ASP 109 -7.383 -9.885 20.871 1.00 0.00 C ATOM 399 C ASP 109 -6.737 -8.647 21.457 1.00 0.00 C ATOM 400 O ASP 109 -5.528 -8.553 21.503 1.00 0.00 O ATOM 401 N ASP 110 -7.564 -7.752 21.992 1.00 0.00 N ATOM 402 CA ASP 110 -7.105 -6.488 22.574 1.00 0.00 C ATOM 403 C ASP 110 -6.139 -6.604 23.737 1.00 0.00 C ATOM 404 O ASP 110 -5.189 -5.827 23.864 1.00 0.00 O ATOM 405 N GLN 111 -6.372 -7.597 24.575 1.00 0.00 N ATOM 406 CA GLN 111 -5.568 -7.781 25.784 1.00 0.00 C ATOM 407 C GLN 111 -4.123 -8.130 25.396 1.00 0.00 C ATOM 408 O GLN 111 -3.193 -7.843 26.156 1.00 0.00 O ATOM 409 N THR 112 -3.968 -8.764 24.224 1.00 0.00 N ATOM 410 CA THR 112 -2.665 -9.158 23.681 1.00 0.00 C ATOM 411 C THR 112 -2.014 -8.008 22.939 1.00 0.00 C ATOM 412 O THR 112 -0.800 -7.857 23.011 1.00 0.00 O ATOM 413 N ALA 113 -2.816 -7.204 22.229 1.00 0.00 N ATOM 414 CA ALA 113 -2.327 -5.935 21.675 1.00 0.00 C ATOM 415 C ALA 113 -1.761 -5.077 22.830 1.00 0.00 C ATOM 416 O ALA 113 -0.724 -4.451 22.677 1.00 0.00 O ATOM 417 N ILE 114 -2.422 -5.065 23.991 1.00 0.00 N ATOM 418 CA ILE 114 -1.916 -4.317 25.136 1.00 0.00 C ATOM 419 C ILE 114 -0.535 -4.801 25.526 1.00 0.00 C ATOM 420 O ILE 114 0.398 -4.005 25.662 1.00 0.00 O ATOM 421 N GLU 115 -0.419 -6.116 25.697 1.00 0.00 N ATOM 422 CA GLU 115 0.861 -6.792 26.024 1.00 0.00 C ATOM 423 C GLU 115 1.964 -6.466 25.012 1.00 0.00 C ATOM 424 O GLU 115 3.046 -6.049 25.384 1.00 0.00 O ATOM 425 N LEU 116 1.648 -6.622 23.731 1.00 0.00 N ATOM 426 CA LEU 116 2.578 -6.370 22.641 1.00 0.00 C ATOM 427 C LEU 116 3.066 -4.936 22.658 1.00 0.00 C ATOM 428 O LEU 116 4.253 -4.677 22.562 1.00 0.00 O ATOM 429 N LEU 117 2.134 -3.994 22.780 1.00 0.00 N ATOM 430 CA LEU 117 2.450 -2.594 22.851 1.00 0.00 C ATOM 431 C LEU 117 3.357 -2.311 24.053 1.00 0.00 C ATOM 432 O LEU 117 4.340 -1.580 23.940 1.00 0.00 O ATOM 433 N ILE 118 3.051 -2.900 25.197 1.00 0.00 N ATOM 434 CA ILE 118 3.912 -2.725 26.373 1.00 0.00 C ATOM 435 C ILE 118 5.354 -3.232 26.151 1.00 0.00 C ATOM 436 O ILE 118 6.316 -2.585 26.577 1.00 0.00 O ATOM 437 N LYS 119 5.487 -4.380 25.476 1.00 0.00 N ATOM 438 CA LYS 119 6.787 -4.898 25.016 1.00 0.00 C ATOM 439 C LYS 119 7.484 -3.948 24.065 1.00 0.00 C ATOM 440 O LYS 119 8.657 -3.683 24.230 1.00 0.00 O ATOM 441 N ARG 120 6.768 -3.472 23.045 1.00 0.00 N ATOM 442 CA ARG 120 7.330 -2.526 22.069 1.00 0.00 C ATOM 443 C ARG 120 7.834 -1.257 22.742 1.00 0.00 C ATOM 444 O ARG 120 8.773 -0.648 22.242 1.00 0.00 O ATOM 445 N SER 121 7.212 -0.856 23.854 1.00 0.00 N ATOM 446 CA SER 121 7.551 0.387 24.564 1.00 0.00 C ATOM 447 C SER 121 8.596 0.205 25.693 1.00 0.00 C ATOM 448 O SER 121 9.122 1.205 26.227 1.00 0.00 O ATOM 449 N ARG 122 8.880 -1.040 26.083 1.00 0.00 N ATOM 450 CA ARG 122 9.822 -1.315 27.183 1.00 0.00 C ATOM 451 C ARG 122 11.300 -1.061 26.889 1.00 0.00 C ATOM 452 O ARG 122 11.718 -0.903 25.727 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 152 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 10.66 98.6 74 97.4 76 ARMSMC SECONDARY STRUCTURE . . 9.23 98.4 64 100.0 64 ARMSMC SURFACE . . . . . . . . 10.90 98.6 70 97.2 72 ARMSMC BURIED . . . . . . . . 4.70 100.0 4 100.0 4 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 34 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 24 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.63 (Number of atoms: 38) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.63 38 97.4 39 CRMSCA CRN = ALL/NP . . . . . 0.0429 CRMSCA SECONDARY STRUCTURE . . 1.66 32 100.0 32 CRMSCA SURFACE . . . . . . . . 1.66 36 97.3 37 CRMSCA BURIED . . . . . . . . 0.88 2 100.0 2 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.51 152 78.4 194 CRMSMC SECONDARY STRUCTURE . . 1.50 128 80.0 160 CRMSMC SURFACE . . . . . . . . 1.54 144 78.3 184 CRMSMC BURIED . . . . . . . . 0.83 8 80.0 10 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 157 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 139 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 130 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 155 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 2 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.51 152 48.6 313 CRMSALL SECONDARY STRUCTURE . . 1.50 128 49.6 258 CRMSALL SURFACE . . . . . . . . 1.54 144 47.5 303 CRMSALL BURIED . . . . . . . . 0.83 8 80.0 10 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.552 1.000 0.500 38 97.4 39 ERRCA SECONDARY STRUCTURE . . 1.577 1.000 0.500 32 100.0 32 ERRCA SURFACE . . . . . . . . 1.592 1.000 0.500 36 97.3 37 ERRCA BURIED . . . . . . . . 0.825 1.000 0.500 2 100.0 2 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.398 1.000 0.500 152 78.4 194 ERRMC SECONDARY STRUCTURE . . 1.387 1.000 0.500 128 80.0 160 ERRMC SURFACE . . . . . . . . 1.433 1.000 0.500 144 78.3 184 ERRMC BURIED . . . . . . . . 0.766 1.000 0.500 8 80.0 10 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 157 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 139 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 130 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 155 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 2 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.398 1.000 0.500 152 48.6 313 ERRALL SECONDARY STRUCTURE . . 1.387 1.000 0.500 128 49.6 258 ERRALL SURFACE . . . . . . . . 1.433 1.000 0.500 144 47.5 303 ERRALL BURIED . . . . . . . . 0.766 1.000 0.500 8 80.0 10 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 6 32 38 38 38 38 39 DISTCA CA (P) 15.38 82.05 97.44 97.44 97.44 39 DISTCA CA (RMS) 0.84 1.45 1.63 1.63 1.63 DISTCA ALL (N) 37 135 149 152 152 152 313 DISTALL ALL (P) 11.82 43.13 47.60 48.56 48.56 313 DISTALL ALL (RMS) 0.75 1.33 1.46 1.51 1.51 DISTALL END of the results output