####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 34 ( 258), selected 34 , name T0582TS436_1-D2 # Molecule2: number of CA atoms 99 ( 732), selected 34 , name T0582-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0582TS436_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 123 - 135 4.65 17.94 LCS_AVERAGE: 11.56 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 150 - 156 1.66 19.95 LCS_AVERAGE: 5.64 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 124 - 127 0.98 16.97 LONGEST_CONTINUOUS_SEGMENT: 4 127 - 130 0.80 12.68 LONGEST_CONTINUOUS_SEGMENT: 4 128 - 131 0.73 13.59 LONGEST_CONTINUOUS_SEGMENT: 4 139 - 142 0.67 23.00 LONGEST_CONTINUOUS_SEGMENT: 4 150 - 153 0.72 16.82 LCS_AVERAGE: 3.51 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 34 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 123 M 123 3 5 13 3 3 3 4 5 5 5 7 9 9 11 11 12 12 13 13 16 16 18 19 LCS_GDT E 124 E 124 4 5 13 3 3 4 5 5 5 6 7 9 12 12 12 13 15 16 17 18 19 21 22 LCS_GDT A 125 A 125 4 5 13 3 3 4 5 5 5 6 7 8 12 12 12 14 15 16 17 18 20 21 22 LCS_GDT E 126 E 126 4 5 13 3 3 4 5 5 5 8 11 12 12 12 13 15 15 17 17 18 20 21 22 LCS_GDT L 127 L 127 4 5 13 3 4 4 5 7 9 9 11 12 12 12 13 15 15 17 17 18 20 21 22 LCS_GDT G 128 G 128 4 5 13 3 4 6 7 8 9 9 11 12 12 12 13 15 15 17 17 18 20 21 22 LCS_GDT A 129 A 129 4 5 13 3 4 6 7 8 9 9 11 12 12 12 13 15 15 17 17 18 20 21 22 LCS_GDT P 130 P 130 4 5 13 3 4 6 7 8 9 9 11 12 12 12 13 15 15 17 17 18 20 21 22 LCS_GDT V 131 V 131 4 5 13 3 4 6 7 8 9 9 11 12 12 12 13 15 15 17 17 18 20 21 22 LCS_GDT E 132 E 132 3 4 13 3 3 4 4 5 6 7 7 12 12 12 13 15 15 17 17 18 20 20 22 LCS_GDT G 133 G 133 3 5 13 3 3 4 4 6 7 9 11 12 12 12 13 15 15 17 17 18 20 21 22 LCS_GDT I 134 I 134 3 5 13 3 3 4 4 8 9 9 11 12 12 12 13 15 15 17 17 18 20 21 22 LCS_GDT S 135 S 135 3 5 13 3 3 3 4 4 5 6 7 8 9 10 12 14 15 16 17 18 20 21 22 LCS_GDT T 136 T 136 3 5 12 3 3 3 4 5 5 6 7 8 9 10 12 14 15 16 17 18 19 21 22 LCS_GDT S 137 S 137 3 6 12 3 3 3 4 5 6 6 8 9 9 10 11 13 14 15 15 16 17 18 22 LCS_GDT L 138 L 138 3 6 12 3 3 4 5 5 6 6 8 9 9 10 11 13 14 15 15 18 18 20 22 LCS_GDT L 139 L 139 4 6 12 3 4 4 5 5 6 6 8 9 9 10 11 11 14 15 15 18 18 20 22 LCS_GDT H 140 H 140 4 6 11 3 4 4 5 5 6 6 8 9 9 9 9 10 11 12 15 18 19 20 22 LCS_GDT E 141 E 141 4 6 11 3 4 4 5 5 6 6 7 9 9 9 9 10 11 13 16 18 19 21 22 LCS_GDT D 142 D 142 4 6 11 3 4 4 5 5 6 6 8 9 9 9 9 10 11 11 11 12 14 17 20 LCS_GDT E 143 E 143 3 6 11 3 3 3 4 5 6 6 8 9 9 9 9 10 11 11 11 12 13 15 15 LCS_GDT R 144 R 144 3 6 11 0 3 3 4 5 6 6 8 9 9 9 9 10 11 11 11 12 13 14 15 LCS_GDT E 145 E 145 3 5 11 0 3 3 4 5 5 6 8 9 9 9 9 10 11 13 13 14 16 18 19 LCS_GDT T 146 T 146 3 5 11 1 3 3 4 5 5 6 6 7 7 9 9 10 11 13 13 14 16 18 19 LCS_GDT V 147 V 147 3 5 10 0 3 3 4 5 5 6 6 7 7 9 9 10 11 13 13 14 16 19 20 LCS_GDT T 148 T 148 3 4 10 3 3 3 4 4 4 6 6 7 7 9 10 11 12 14 15 17 20 20 21 LCS_GDT H 149 H 149 3 5 10 3 3 3 4 5 7 7 8 8 10 11 13 15 15 17 17 18 20 21 22 LCS_GDT R 150 R 150 4 7 10 3 4 5 5 6 7 7 8 8 10 10 12 15 15 17 17 18 20 21 22 LCS_GDT K 151 K 151 4 7 10 3 4 5 5 6 7 7 8 8 10 10 11 12 15 17 17 18 20 21 22 LCS_GDT L 152 L 152 4 7 9 3 4 4 4 6 7 7 8 8 10 10 10 11 14 17 17 18 20 21 22 LCS_GDT E 153 E 153 4 7 9 3 4 5 5 6 7 7 8 8 10 12 12 15 15 17 17 18 20 21 22 LCS_GDT P 154 P 154 3 7 9 3 3 5 7 8 9 9 11 12 12 12 13 15 15 17 17 18 20 21 22 LCS_GDT G 155 G 155 3 7 9 3 4 6 7 8 9 9 11 12 12 12 13 15 15 17 17 18 20 21 22 LCS_GDT A 156 A 156 3 7 9 3 3 6 7 8 9 9 11 12 12 12 13 15 15 17 17 18 20 21 22 LCS_AVERAGE LCS_A: 6.90 ( 3.51 5.64 11.56 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 6 7 8 9 9 11 12 12 12 13 15 15 17 17 18 20 21 22 GDT PERCENT_AT 3.03 4.04 6.06 7.07 8.08 9.09 9.09 11.11 12.12 12.12 12.12 13.13 15.15 15.15 17.17 17.17 18.18 20.20 21.21 22.22 GDT RMS_LOCAL 0.03 0.67 1.06 1.34 1.47 1.90 1.90 2.73 3.05 3.05 3.05 3.94 4.64 4.40 5.11 4.96 5.45 6.04 6.59 6.99 GDT RMS_ALL_AT 18.03 23.00 13.80 14.03 14.07 13.45 13.45 13.09 13.23 13.23 13.23 12.74 12.86 13.35 12.98 12.92 12.66 12.44 11.40 11.16 # Checking swapping # possible swapping detected: E 132 E 132 # possible swapping detected: D 142 D 142 # possible swapping detected: E 143 E 143 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 123 M 123 14.040 0 0.249 1.177 22.419 0.000 0.000 LGA E 124 E 124 9.798 0 0.566 0.983 14.628 4.643 2.063 LGA A 125 A 125 8.311 0 0.653 0.619 10.729 11.548 9.238 LGA E 126 E 126 4.506 0 0.504 0.830 11.325 38.333 18.307 LGA L 127 L 127 1.753 0 0.516 1.486 7.034 60.476 45.655 LGA G 128 G 128 2.487 0 0.206 0.206 3.776 61.667 61.667 LGA A 129 A 129 2.666 0 0.183 0.727 5.074 69.286 60.667 LGA P 130 P 130 0.796 0 0.362 0.358 1.960 83.810 79.116 LGA V 131 V 131 1.756 0 0.613 0.664 4.440 65.357 57.007 LGA E 132 E 132 6.010 0 0.479 0.790 11.220 26.548 12.910 LGA G 133 G 133 3.908 0 0.685 0.685 4.730 44.167 44.167 LGA I 134 I 134 3.237 0 0.564 0.740 7.565 47.262 31.726 LGA S 135 S 135 8.141 0 0.428 0.863 11.233 8.929 6.032 LGA T 136 T 136 9.175 0 0.647 0.954 13.078 1.071 5.782 LGA S 137 S 137 15.822 0 0.509 0.561 20.155 0.000 0.000 LGA L 138 L 138 17.164 0 0.639 1.479 21.209 0.000 0.000 LGA L 139 L 139 16.420 0 0.248 1.211 19.834 0.000 0.000 LGA H 140 H 140 14.808 0 0.264 0.912 21.292 0.000 0.000 LGA E 141 E 141 11.932 0 0.278 1.058 14.907 0.000 1.376 LGA D 142 D 142 17.077 0 0.030 1.043 19.422 0.000 0.000 LGA E 143 E 143 22.914 0 0.513 1.376 27.658 0.000 0.000 LGA R 144 R 144 24.988 0 0.407 1.477 33.889 0.000 0.000 LGA E 145 E 145 23.819 0 0.149 0.897 24.427 0.000 0.000 LGA T 146 T 146 23.845 0 0.313 0.359 24.782 0.000 0.000 LGA V 147 V 147 21.676 0 0.632 1.191 22.173 0.000 0.000 LGA T 148 T 148 17.068 0 0.637 1.498 19.473 0.000 0.000 LGA H 149 H 149 13.482 0 0.557 0.797 15.217 0.000 3.000 LGA R 150 R 150 13.788 0 0.276 0.851 20.139 0.000 0.000 LGA K 151 K 151 12.328 0 0.378 0.762 12.778 0.000 0.000 LGA L 152 L 152 10.384 0 0.163 1.231 12.626 0.714 0.357 LGA E 153 E 153 7.041 0 0.190 1.507 9.712 20.833 11.376 LGA P 154 P 154 2.842 0 0.516 0.604 6.196 56.071 41.429 LGA G 155 G 155 0.329 0 0.348 0.348 2.945 80.119 80.119 LGA A 156 A 156 2.712 0 0.106 0.127 3.673 55.833 53.333 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 34 136 136 100.00 258 258 100.00 99 SUMMARY(RMSD_GDC): 10.334 10.189 11.740 7.441 6.316 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 34 99 4.0 11 2.73 9.848 8.978 0.389 LGA_LOCAL RMSD: 2.725 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.090 Number of assigned atoms: 34 Std_ASGN_ATOMS RMSD: 10.334 Standard rmsd on all 34 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.683072 * X + -0.487012 * Y + 0.544272 * Z + 26.029837 Y_new = -0.273508 * X + 0.520417 * Y + 0.808925 * Z + -13.854014 Z_new = -0.677205 * X + -0.701417 * Y + 0.222280 * Z + 64.347435 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.380859 0.743957 -1.263906 [DEG: -21.8216 42.6256 -72.4165 ] ZXZ: 2.549333 1.346644 -2.373755 [DEG: 146.0660 77.1570 -136.0062 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0582TS436_1-D2 REMARK 2: T0582-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0582TS436_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 34 99 4.0 11 2.73 8.978 10.33 REMARK ---------------------------------------------------------- MOLECULE T0582TS436_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0582 REMARK MODEL 1 REFINED REMARK PARENT 3EBR_A ATOM 1872 N MET 123 51.595 0.844 47.005 1.00 2.44 N ATOM 1873 CA MET 123 51.079 -0.491 47.016 1.00 1.18 C ATOM 1874 C MET 123 51.016 -1.052 45.583 1.00 1.24 C ATOM 1875 O MET 123 50.315 -2.065 45.329 1.00 1.09 O ATOM 1876 CB MET 123 49.997 -0.955 48.045 1.00 2.56 C ATOM 1881 CG MET 123 48.556 -0.422 47.776 1.00 1.31 C ATOM 1884 SD MET 123 47.519 -0.473 49.291 1.00 1.31 S ATOM 1885 CE MET 123 47.509 -2.232 49.794 1.00 1.31 C ATOM 1889 CA GLU 124 52.013 -0.958 43.457 1.00 1.31 C ATOM 1890 N GLU 124 51.823 -0.467 44.723 1.00 1.31 N ATOM 1893 C GLU 124 52.950 -2.136 43.638 1.00 1.31 C ATOM 1894 O GLU 124 54.186 -1.960 43.563 1.00 1.31 O ATOM 1895 CB GLU 124 50.745 -1.114 42.598 1.00 1.31 C ATOM 1898 CG GLU 124 49.553 -0.154 42.937 1.00 1.31 C ATOM 1901 CD GLU 124 48.511 -0.138 41.799 1.00 1.31 C ATOM 1902 OE1 GLU 124 47.389 -0.700 41.899 1.00 1.31 O ATOM 1903 OE2 GLU 124 48.823 0.459 40.737 1.00 1.31 O ATOM 1904 N ALA 125 52.400 -3.270 44.046 1.00 1.38 N ATOM 1905 CA ALA 125 53.237 -4.343 44.429 1.00 1.80 C ATOM 1906 C ALA 125 53.743 -5.024 43.152 1.00 1.48 C ATOM 1907 O ALA 125 52.911 -5.376 42.285 1.00 0.97 O ATOM 1908 CB ALA 125 52.453 -5.324 45.337 1.00 2.42 C ATOM 1914 N GLU 126 55.028 -5.148 43.005 1.00 2.17 N ATOM 1915 CA GLU 126 55.614 -5.431 41.749 1.00 2.85 C ATOM 1916 C GLU 126 55.360 -4.187 40.852 1.00 4.99 C ATOM 1917 O GLU 126 56.317 -3.412 40.646 1.00 6.79 O ATOM 1918 CB GLU 126 55.255 -6.820 41.104 1.00 2.24 C ATOM 1919 CG GLU 126 54.653 -7.917 42.057 1.00 2.53 C ATOM 1926 CD GLU 126 55.292 -8.010 43.451 1.00 1.31 C ATOM 1927 OE1 GLU 126 54.573 -7.893 44.478 1.00 1.31 O ATOM 1928 OE2 GLU 126 56.524 -8.222 43.570 1.00 1.31 O ATOM 1929 CA LEU 127 53.630 -2.713 40.017 1.00 1.31 C ATOM 1930 N LEU 127 54.133 -3.979 40.437 1.00 1.31 N ATOM 1933 C LEU 127 52.059 -2.769 39.968 1.00 1.31 C ATOM 1934 O LEU 127 51.446 -1.888 39.334 1.00 1.31 O ATOM 1935 CB LEU 127 54.282 -2.241 38.661 1.00 1.31 C ATOM 1938 CG LEU 127 53.759 -0.895 38.025 1.00 1.31 C ATOM 1939 CD1 LEU 127 53.593 0.276 39.052 1.00 1.31 C ATOM 1940 CD2 LEU 127 54.727 -0.435 36.891 1.00 1.31 C ATOM 1948 CA GLY 128 50.009 -3.832 40.559 1.00 1.31 C ATOM 1949 N GLY 128 51.418 -3.708 40.613 1.00 1.31 N ATOM 1953 C GLY 128 49.656 -4.993 41.504 1.00 1.31 C ATOM 1954 O GLY 128 49.966 -4.905 42.720 1.00 1.31 O ATOM 1955 N ALA 129 49.135 -6.064 40.940 1.00 1.62 N ATOM 1956 CA ALA 129 49.967 -7.190 40.854 1.00 2.33 C ATOM 1957 C ALA 129 49.263 -8.527 40.615 1.00 2.85 C ATOM 1958 O ALA 129 48.060 -8.523 40.283 1.00 3.59 O ATOM 1959 CB ALA 129 51.036 -6.933 39.784 1.00 1.91 C ATOM 1965 CA PRO 130 49.527 -10.942 39.956 1.00 1.31 C ATOM 1966 N PRO 130 49.924 -9.709 40.693 1.00 1.31 N ATOM 1968 C PRO 130 48.321 -11.635 40.627 1.00 1.31 C ATOM 1969 O PRO 130 48.444 -12.752 41.166 1.00 1.31 O ATOM 1970 CB PRO 130 50.813 -11.807 39.915 1.00 1.31 C ATOM 1973 CG PRO 130 51.528 -11.452 41.238 1.00 1.31 C ATOM 1976 CD PRO 130 51.192 -9.948 41.429 1.00 1.31 C ATOM 1979 N VAL 131 47.214 -10.962 40.586 1.00 1.70 N ATOM 1980 CA VAL 131 46.074 -11.276 41.345 1.00 2.00 C ATOM 1981 C VAL 131 44.917 -10.397 40.818 1.00 2.39 C ATOM 1982 O VAL 131 43.808 -10.924 40.595 1.00 2.70 O ATOM 1983 CB VAL 131 46.329 -11.017 42.874 1.00 2.08 C ATOM 1987 CG1 VAL 131 45.072 -11.427 43.707 1.00 1.31 C ATOM 1988 CG2 VAL 131 46.751 -9.556 43.238 1.00 1.31 C ATOM 1995 N GLU 132 45.184 -9.141 40.569 1.00 2.41 N ATOM 1996 CA GLU 132 44.493 -8.462 39.544 1.00 2.42 C ATOM 1997 C GLU 132 44.974 -9.159 38.251 1.00 2.51 C ATOM 1998 O GLU 132 44.126 -9.605 37.459 1.00 2.62 O ATOM 1999 CB GLU 132 44.816 -6.938 39.729 1.00 2.54 C ATOM 2000 CG GLU 132 43.863 -5.932 39.010 1.00 2.90 C ATOM 2001 CD GLU 132 43.699 -4.630 39.718 1.00 3.80 C ATOM 2008 OE1 GLU 132 42.571 -4.208 40.082 1.00 1.31 O ATOM 2009 OE2 GLU 132 44.731 -3.952 39.966 1.00 1.31 O ATOM 2010 CA GLY 133 46.723 -10.258 37.035 1.00 1.31 C ATOM 2011 N GLY 133 46.216 -9.442 38.082 1.00 1.31 N ATOM 2015 C GLY 133 46.096 -11.607 36.807 1.00 1.31 C ATOM 2016 O GLY 133 45.160 -11.982 37.538 1.00 1.31 O ATOM 2017 N ILE 134 46.464 -12.193 35.713 1.00 1.57 N ATOM 2018 CA ILE 134 45.578 -13.019 35.013 1.00 1.09 C ATOM 2019 C ILE 134 44.396 -12.156 34.461 1.00 1.27 C ATOM 2020 O ILE 134 44.213 -12.108 33.226 1.00 2.15 O ATOM 2021 CB ILE 134 45.271 -14.344 35.829 1.00 1.31 C ATOM 2022 CG1 ILE 134 46.649 -14.975 36.280 1.00 1.43 C ATOM 2023 CD1 ILE 134 46.572 -16.268 37.140 1.00 1.93 C ATOM 2029 CG2 ILE 134 44.412 -15.351 35.002 1.00 1.31 C ATOM 2036 N SER 135 43.672 -11.447 35.277 1.00 1.23 N ATOM 2037 CA SER 135 42.393 -11.016 34.887 1.00 1.82 C ATOM 2038 C SER 135 42.267 -9.762 33.894 1.00 1.80 C ATOM 2039 O SER 135 41.565 -8.876 34.388 1.00 2.13 O ATOM 2040 CB SER 135 41.606 -10.756 36.236 1.00 1.95 C ATOM 2045 OG SER 135 40.119 -10.810 36.029 1.00 1.31 O ATOM 2047 N THR 136 42.807 -9.620 32.654 1.00 2.24 N ATOM 2048 CA THR 136 42.571 -8.423 31.814 1.00 1.98 C ATOM 2049 C THR 136 41.650 -8.454 30.592 1.00 1.94 C ATOM 2050 O THR 136 40.921 -7.447 30.404 1.00 2.31 O ATOM 2051 CB THR 136 43.690 -7.418 31.270 1.00 2.18 C ATOM 2055 OG1 THR 136 43.731 -6.174 32.121 1.00 1.31 O ATOM 2057 CG2 THR 136 43.549 -6.735 29.850 1.00 1.31 C ATOM 2061 N SER 137 41.757 -9.381 29.698 1.00 2.53 N ATOM 2062 CA SER 137 40.750 -9.457 28.722 1.00 3.27 C ATOM 2063 C SER 137 39.386 -9.469 29.490 1.00 3.66 C ATOM 2064 O SER 137 38.751 -8.381 29.595 1.00 4.47 O ATOM 2065 CB SER 137 41.067 -10.675 27.816 1.00 4.23 C ATOM 2070 OG SER 137 39.927 -10.933 26.870 1.00 1.31 O ATOM 2072 CA LEU 138 39.324 -10.626 31.553 1.00 1.31 C ATOM 2073 N LEU 138 39.087 -10.557 30.153 1.00 1.31 N ATOM 2076 C LEU 138 39.342 -9.353 32.580 1.00 1.31 C ATOM 2077 O LEU 138 39.220 -9.690 33.771 1.00 1.31 O ATOM 2078 CB LEU 138 40.599 -11.563 31.697 1.00 1.31 C ATOM 2081 CG LEU 138 40.651 -13.094 31.260 1.00 1.31 C ATOM 2082 CD1 LEU 138 42.081 -13.509 30.739 1.00 1.31 C ATOM 2083 CD2 LEU 138 39.591 -13.604 30.230 1.00 1.31 C ATOM 2091 N LEU 139 39.433 -8.043 32.264 1.00 3.85 N ATOM 2092 CA LEU 139 39.480 -6.888 33.189 1.00 4.63 C ATOM 2093 C LEU 139 40.848 -6.079 33.614 1.00 6.68 C ATOM 2094 O LEU 139 41.188 -5.104 32.918 1.00 8.38 O ATOM 2095 CB LEU 139 38.467 -6.959 34.389 1.00 2.86 C ATOM 2100 CG LEU 139 36.967 -7.100 33.930 1.00 1.31 C ATOM 2101 CD1 LEU 139 36.390 -5.758 33.462 1.00 1.31 C ATOM 2102 CD2 LEU 139 36.124 -7.710 35.082 1.00 1.31 C ATOM 2110 CA HIS 140 42.850 -6.010 35.194 1.00 1.31 C ATOM 2111 N HIS 140 41.570 -6.472 34.657 1.00 1.31 N ATOM 2114 C HIS 140 43.516 -4.569 35.151 1.00 1.31 C ATOM 2115 O HIS 140 42.776 -3.577 35.009 1.00 1.31 O ATOM 2116 CB HIS 140 43.922 -7.170 35.371 1.00 1.31 C ATOM 2119 CG HIS 140 44.900 -7.666 34.266 1.00 1.31 C ATOM 2120 ND1 HIS 140 45.128 -9.056 33.970 1.00 1.31 N ATOM 2121 CD2 HIS 140 45.770 -6.971 33.458 1.00 1.31 C ATOM 2122 CE1 HIS 140 45.991 -9.161 32.983 1.00 1.31 C ATOM 2123 NE2 HIS 140 46.457 -7.862 32.511 1.00 1.31 N ATOM 2127 CA GLU 141 45.444 -3.508 36.226 1.00 1.31 C ATOM 2128 N GLU 141 44.834 -4.472 35.391 1.00 1.31 N ATOM 2131 C GLU 141 46.839 -3.954 36.670 1.00 1.31 C ATOM 2132 O GLU 141 46.971 -4.402 37.828 1.00 1.31 O ATOM 2133 CB GLU 141 45.524 -2.026 35.811 1.00 1.31 C ATOM 2136 CG GLU 141 46.041 -1.086 36.974 1.00 1.31 C ATOM 2139 CD GLU 141 47.539 -0.764 37.088 1.00 1.31 C ATOM 2140 OE1 GLU 141 47.929 0.041 37.974 1.00 1.31 O ATOM 2141 OE2 GLU 141 48.373 -1.269 36.303 1.00 1.31 O ATOM 2142 CA ASP 142 49.124 -4.383 36.060 1.00 1.31 C ATOM 2143 N ASP 142 47.858 -3.794 35.848 1.00 1.31 N ATOM 2146 C ASP 142 49.339 -5.411 34.953 1.00 1.31 C ATOM 2147 O ASP 142 48.582 -5.353 33.956 1.00 1.31 O ATOM 2148 CB ASP 142 50.247 -3.388 36.420 1.00 1.31 C ATOM 2151 CG ASP 142 51.628 -4.007 36.719 1.00 1.31 C ATOM 2152 OD1 ASP 142 52.615 -3.756 35.985 1.00 1.31 O ATOM 2153 OD2 ASP 142 51.789 -4.723 37.735 1.00 1.31 O ATOM 2154 CA GLU 143 49.873 -7.779 34.829 1.00 1.31 C ATOM 2155 N GLU 143 50.174 -6.412 35.174 1.00 1.31 N ATOM 2158 C GLU 143 50.499 -8.460 33.550 1.00 1.31 C ATOM 2159 O GLU 143 51.723 -8.314 33.351 1.00 1.31 O ATOM 2160 CB GLU 143 48.367 -8.080 34.943 1.00 1.31 C ATOM 2163 CG GLU 143 47.587 -7.388 36.102 1.00 1.31 C ATOM 2166 CD GLU 143 48.309 -7.466 37.435 1.00 1.31 C ATOM 2167 OE1 GLU 143 49.206 -8.320 37.651 1.00 1.31 O ATOM 2168 OE2 GLU 143 47.978 -6.671 38.338 1.00 1.31 O ATOM 2169 CA ARG 144 50.197 -10.664 32.719 1.00 1.31 C ATOM 2170 N ARG 144 49.762 -9.301 32.825 1.00 1.31 N ATOM 2173 C ARG 144 50.282 -11.268 31.277 1.00 1.31 C ATOM 2174 O ARG 144 51.131 -10.767 30.523 1.00 1.31 O ATOM 2175 CB ARG 144 49.376 -11.547 33.723 1.00 1.31 C ATOM 2178 CG ARG 144 49.957 -12.997 33.880 1.00 1.31 C ATOM 2181 CD ARG 144 50.255 -13.373 35.359 1.00 1.31 C ATOM 2184 NE ARG 144 50.897 -14.626 35.393 1.00 1.31 N ATOM 2186 CZ ARG 144 51.293 -15.239 36.578 1.00 1.31 C ATOM 2187 NH1 ARG 144 50.966 -14.749 37.750 1.00 1.31 H ATOM 2188 NH2 ARG 144 52.006 -16.335 36.516 1.00 1.31 H ATOM 2193 N GLU 145 49.552 -12.306 30.913 1.00 3.19 N ATOM 2194 CA GLU 145 50.039 -13.331 30.041 1.00 2.31 C ATOM 2195 C GLU 145 51.245 -14.071 30.672 1.00 1.40 C ATOM 2196 O GLU 145 52.280 -13.414 30.959 1.00 1.82 O ATOM 2197 CB GLU 145 50.410 -12.983 28.549 1.00 1.61 C ATOM 2198 CG GLU 145 49.179 -12.777 27.616 1.00 2.56 C ATOM 2199 CD GLU 145 49.643 -12.716 26.144 1.00 2.01 C ATOM 2206 OE1 GLU 145 50.455 -11.843 25.781 1.00 1.31 O ATOM 2207 OE2 GLU 145 49.231 -13.588 25.328 1.00 1.31 O ATOM 2208 N THR 146 51.209 -15.397 30.762 1.00 1.57 N ATOM 2209 CA THR 146 52.349 -16.126 31.186 1.00 0.84 C ATOM 2210 C THR 146 53.270 -16.249 29.962 1.00 1.76 C ATOM 2211 O THR 146 53.573 -17.368 29.507 1.00 2.90 O ATOM 2212 CB THR 146 51.956 -17.481 31.888 1.00 2.11 C ATOM 2216 OG1 THR 146 51.377 -17.157 33.238 1.00 1.31 O ATOM 2218 CG2 THR 146 53.134 -18.470 32.179 1.00 1.31 C ATOM 2222 CA VAL 147 55.065 -15.109 29.062 1.00 1.31 C ATOM 2223 N VAL 147 53.730 -15.139 29.465 1.00 1.31 N ATOM 2226 C VAL 147 55.834 -14.765 30.378 1.00 1.31 C ATOM 2227 O VAL 147 57.036 -15.104 30.436 1.00 1.31 O ATOM 2228 CB VAL 147 55.230 -14.285 27.720 1.00 1.31 C ATOM 2230 CG1 VAL 147 53.906 -14.190 26.875 1.00 1.31 C ATOM 2231 CG2 VAL 147 55.888 -12.891 27.793 1.00 1.31 C ATOM 2238 N THR 148 55.176 -14.213 31.385 1.00 2.12 N ATOM 2239 CA THR 148 55.562 -14.201 32.765 1.00 2.01 C ATOM 2240 C THR 148 56.808 -13.372 33.101 1.00 2.18 C ATOM 2241 O THR 148 56.855 -12.781 34.200 1.00 2.88 O ATOM 2242 CB THR 148 55.564 -15.601 33.486 1.00 1.97 C ATOM 2246 OG1 THR 148 54.203 -15.869 34.072 1.00 1.31 O ATOM 2248 CG2 THR 148 56.587 -15.766 34.656 1.00 1.31 C ATOM 2252 CA HIS 149 58.634 -12.327 32.080 1.00 1.31 C ATOM 2253 N HIS 149 57.773 -13.387 32.236 1.00 1.31 N ATOM 2256 C HIS 149 59.807 -12.735 31.225 1.00 1.31 C ATOM 2257 O HIS 149 60.840 -12.036 31.286 1.00 1.31 O ATOM 2258 CB HIS 149 57.976 -11.006 31.608 1.00 1.31 C ATOM 2261 CG HIS 149 56.793 -10.953 30.604 1.00 1.31 C ATOM 2262 ND1 HIS 149 55.458 -11.441 30.813 1.00 1.31 N ATOM 2263 CD2 HIS 149 56.767 -10.265 29.411 1.00 1.31 C ATOM 2264 CE1 HIS 149 54.672 -10.876 29.922 1.00 1.31 C ATOM 2265 NE2 HIS 149 55.399 -10.081 28.934 1.00 1.31 N ATOM 2269 CA ARG 150 59.761 -13.595 29.038 1.00 1.31 C ATOM 2270 N ARG 150 59.679 -13.774 30.430 1.00 1.31 N ATOM 2273 C ARG 150 59.909 -15.011 28.408 1.00 1.31 C ATOM 2274 O ARG 150 61.010 -15.353 27.933 1.00 1.31 O ATOM 2275 CB ARG 150 60.761 -12.488 28.502 1.00 1.31 C ATOM 2278 CG ARG 150 60.055 -11.085 28.382 1.00 1.31 C ATOM 2281 CD ARG 150 60.801 -9.985 27.571 1.00 1.31 C ATOM 2284 NE ARG 150 60.020 -8.808 27.568 1.00 1.31 N ATOM 2286 CZ ARG 150 60.488 -7.601 27.053 1.00 1.31 C ATOM 2287 NH1 ARG 150 59.626 -6.667 26.734 1.00 1.31 H ATOM 2288 NH2 ARG 150 61.768 -7.370 26.885 1.00 1.31 H ATOM 2293 N LYS 151 58.844 -15.786 28.429 1.00 2.20 N ATOM 2294 CA LYS 151 58.723 -16.990 27.681 1.00 2.36 C ATOM 2295 C LYS 151 57.611 -16.833 26.604 1.00 2.86 C ATOM 2296 O LYS 151 57.689 -15.838 25.859 1.00 3.59 O ATOM 2297 CB LYS 151 58.455 -18.176 28.670 1.00 2.19 C ATOM 2298 CG LYS 151 58.802 -19.547 28.009 1.00 1.94 C ATOM 2299 CD LYS 151 58.427 -20.790 28.876 1.00 1.31 C ATOM 2308 CE LYS 151 56.885 -21.016 28.962 1.00 1.31 C ATOM 2311 NZ LYS 151 56.596 -22.368 29.617 1.00 1.31 N ATOM 2315 CA LEU 152 55.448 -17.503 25.778 1.00 1.31 C ATOM 2316 N LEU 152 56.645 -17.728 26.510 1.00 1.31 N ATOM 2319 C LEU 152 54.425 -18.651 26.026 1.00 1.31 C ATOM 2320 O LEU 152 54.435 -19.639 25.263 1.00 1.31 O ATOM 2321 CB LEU 152 55.634 -17.273 24.228 1.00 1.31 C ATOM 2324 CG LEU 152 54.387 -16.546 23.583 1.00 1.31 C ATOM 2325 CD1 LEU 152 53.662 -17.462 22.548 1.00 1.31 C ATOM 2326 CD2 LEU 152 54.799 -15.194 22.914 1.00 1.31 C ATOM 2334 CA GLU 153 52.412 -19.316 27.157 1.00 1.31 C ATOM 2335 N GLU 153 53.588 -18.533 27.028 1.00 1.31 N ATOM 2338 C GLU 153 51.210 -18.341 27.361 1.00 1.31 C ATOM 2339 O GLU 153 51.169 -17.646 28.382 1.00 1.31 O ATOM 2340 CB GLU 153 52.564 -20.261 28.391 1.00 1.31 C ATOM 2343 CG GLU 153 51.360 -21.235 28.565 1.00 1.31 C ATOM 2346 CD GLU 153 51.535 -22.048 29.862 1.00 1.31 C ATOM 2347 OE1 GLU 153 52.525 -22.812 29.999 1.00 1.31 O ATOM 2348 OE2 GLU 153 50.691 -21.943 30.791 1.00 1.31 O ATOM 2349 CA PRO 154 49.171 -17.174 26.583 1.00 1.31 C ATOM 2350 N PRO 154 50.204 -18.230 26.472 1.00 1.31 N ATOM 2352 C PRO 154 48.419 -17.186 27.936 1.00 1.31 C ATOM 2353 O PRO 154 48.683 -16.274 28.753 1.00 1.31 O ATOM 2354 CB PRO 154 48.209 -17.381 25.375 1.00 1.31 C ATOM 2357 CG PRO 154 49.110 -18.053 24.312 1.00 1.31 C ATOM 2360 CD PRO 154 50.133 -18.878 25.142 1.00 1.31 C ATOM 2363 CA GLY 155 46.375 -17.865 28.920 1.00 1.31 C ATOM 2364 N GLY 155 47.542 -18.130 28.168 1.00 1.31 N ATOM 2368 C GLY 155 46.553 -17.740 30.446 1.00 1.31 C ATOM 2369 O GLY 155 45.991 -18.577 31.178 1.00 1.31 O ATOM 2370 CA ALA 156 47.216 -16.354 32.259 1.00 1.31 C ATOM 2371 N ALA 156 47.243 -16.737 30.905 1.00 1.31 N ATOM 2374 C ALA 156 46.770 -14.882 32.321 1.00 1.31 C ATOM 2375 O ALA 156 47.441 -13.974 31.814 1.00 1.31 O ATOM 2376 CB ALA 156 48.629 -16.558 32.855 1.00 1.31 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 258 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 105.97 16.7 66 33.7 196 ARMSMC SECONDARY STRUCTURE . . 109.18 13.3 30 27.8 108 ARMSMC SURFACE . . . . . . . . 103.56 17.0 47 36.7 128 ARMSMC BURIED . . . . . . . . 111.70 15.8 19 27.9 68 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.04 32.1 28 36.8 76 ARMSSC1 RELIABLE SIDE CHAINS . 89.90 30.8 26 38.2 68 ARMSSC1 SECONDARY STRUCTURE . . 85.33 40.0 15 31.9 47 ARMSSC1 SURFACE . . . . . . . . 81.14 36.8 19 37.3 51 ARMSSC1 BURIED . . . . . . . . 109.02 22.2 9 36.0 25 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.24 28.6 21 38.2 55 ARMSSC2 RELIABLE SIDE CHAINS . 77.04 33.3 15 40.5 37 ARMSSC2 SECONDARY STRUCTURE . . 105.47 22.2 9 30.0 30 ARMSSC2 SURFACE . . . . . . . . 87.83 25.0 16 40.0 40 ARMSSC2 BURIED . . . . . . . . 101.36 40.0 5 33.3 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.02 36.4 11 50.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 66.02 36.4 11 50.0 22 ARMSSC3 SECONDARY STRUCTURE . . 72.66 33.3 3 33.3 9 ARMSSC3 SURFACE . . . . . . . . 70.37 33.3 9 47.4 19 ARMSSC3 BURIED . . . . . . . . 41.08 50.0 2 66.7 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.16 0.0 3 37.5 8 ARMSSC4 RELIABLE SIDE CHAINS . 69.16 0.0 3 37.5 8 ARMSSC4 SECONDARY STRUCTURE . . 43.59 0.0 2 40.0 5 ARMSSC4 SURFACE . . . . . . . . 81.37 0.0 2 28.6 7 ARMSSC4 BURIED . . . . . . . . 33.27 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.33 (Number of atoms: 34) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.33 34 34.3 99 CRMSCA CRN = ALL/NP . . . . . 0.3039 CRMSCA SECONDARY STRUCTURE . . 9.99 15 27.8 54 CRMSCA SURFACE . . . . . . . . 10.58 24 36.9 65 CRMSCA BURIED . . . . . . . . 9.72 10 29.4 34 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.40 167 34.5 484 CRMSMC SECONDARY STRUCTURE . . 10.21 75 28.1 267 CRMSMC SURFACE . . . . . . . . 10.57 117 36.8 318 CRMSMC BURIED . . . . . . . . 9.99 50 30.1 166 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.37 122 36.3 336 CRMSSC RELIABLE SIDE CHAINS . 13.74 102 36.7 278 CRMSSC SECONDARY STRUCTURE . . 11.24 61 30.8 198 CRMSSC SURFACE . . . . . . . . 14.36 85 36.0 236 CRMSSC BURIED . . . . . . . . 10.74 37 37.0 100 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.80 258 35.2 732 CRMSALL SECONDARY STRUCTURE . . 10.70 121 29.2 414 CRMSALL SURFACE . . . . . . . . 12.37 181 36.5 496 CRMSALL BURIED . . . . . . . . 10.35 77 32.6 236 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.091 0.682 0.341 34 34.3 99 ERRCA SECONDARY STRUCTURE . . 7.854 0.685 0.343 15 27.8 54 ERRCA SURFACE . . . . . . . . 8.293 0.680 0.340 24 36.9 65 ERRCA BURIED . . . . . . . . 7.606 0.688 0.344 10 29.4 34 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.005 0.668 0.334 167 34.5 484 ERRMC SECONDARY STRUCTURE . . 7.860 0.666 0.333 75 28.1 267 ERRMC SURFACE . . . . . . . . 8.088 0.661 0.331 117 36.8 318 ERRMC BURIED . . . . . . . . 7.810 0.683 0.341 50 30.1 166 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.826 0.750 0.375 122 36.3 336 ERRSC RELIABLE SIDE CHAINS . 11.105 0.748 0.374 102 36.7 278 ERRSC SECONDARY STRUCTURE . . 9.120 0.729 0.364 61 30.8 198 ERRSC SURFACE . . . . . . . . 11.830 0.769 0.384 85 36.0 236 ERRSC BURIED . . . . . . . . 8.519 0.706 0.353 37 37.0 100 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.252 0.705 0.353 258 35.2 732 ERRALL SECONDARY STRUCTURE . . 8.473 0.697 0.349 121 29.2 414 ERRALL SURFACE . . . . . . . . 9.713 0.709 0.355 181 36.5 496 ERRALL BURIED . . . . . . . . 8.170 0.696 0.348 77 32.6 236 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 2 20 34 99 DISTCA CA (P) 0.00 0.00 0.00 2.02 20.20 99 DISTCA CA (RMS) 0.00 0.00 0.00 3.65 7.73 DISTCA ALL (N) 0 2 3 13 121 258 732 DISTALL ALL (P) 0.00 0.27 0.41 1.78 16.53 732 DISTALL ALL (RMS) 0.00 1.52 1.87 3.72 7.61 DISTALL END of the results output