####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 99 ( 396), selected 99 , name T0582TS328_1-D2 # Molecule2: number of CA atoms 99 ( 732), selected 99 , name T0582-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0582TS328_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 128 - 156 4.76 19.22 LONGEST_CONTINUOUS_SEGMENT: 29 129 - 157 4.78 19.40 LCS_AVERAGE: 25.69 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 181 - 191 1.48 14.73 LCS_AVERAGE: 8.18 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 183 - 190 0.93 14.51 LCS_AVERAGE: 4.80 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 99 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 123 M 123 4 6 16 3 3 4 5 5 6 7 10 11 13 14 19 21 24 30 38 43 46 48 49 LCS_GDT E 124 E 124 4 6 21 3 3 4 5 5 6 7 7 9 16 19 19 21 25 31 34 41 46 48 53 LCS_GDT A 125 A 125 4 6 21 3 3 4 5 5 6 7 7 10 12 14 17 19 22 23 27 31 39 41 53 LCS_GDT E 126 E 126 4 6 21 3 3 4 5 5 8 9 11 12 13 15 19 21 24 30 34 38 44 48 53 LCS_GDT L 127 L 127 3 6 23 3 3 3 4 5 7 7 10 11 13 15 17 20 22 30 34 38 42 48 53 LCS_GDT G 128 G 128 3 6 29 3 3 4 5 6 7 9 11 11 13 19 20 25 31 37 40 45 48 50 53 LCS_GDT A 129 A 129 3 6 29 3 3 4 7 8 12 13 15 17 22 25 28 31 35 37 41 45 48 51 54 LCS_GDT P 130 P 130 4 6 29 3 4 4 5 7 8 11 14 16 20 24 27 31 35 38 41 45 48 51 54 LCS_GDT V 131 V 131 4 6 29 3 4 4 5 6 7 9 12 13 20 28 31 32 35 38 41 46 48 51 55 LCS_GDT E 132 E 132 4 9 29 3 4 4 6 10 11 14 16 20 24 28 31 32 35 39 43 46 48 51 55 LCS_GDT G 133 G 133 7 9 29 3 7 7 8 10 11 14 16 20 23 25 28 32 35 38 41 45 47 51 55 LCS_GDT I 134 I 134 7 9 29 3 7 7 8 10 11 14 16 20 23 28 31 32 35 38 41 45 48 51 55 LCS_GDT S 135 S 135 7 9 29 3 7 7 8 10 11 14 17 20 23 25 28 31 35 38 41 45 48 51 54 LCS_GDT T 136 T 136 7 9 29 3 7 7 8 10 11 14 17 20 23 25 28 31 35 37 40 45 48 50 53 LCS_GDT S 137 S 137 7 9 29 3 7 7 8 10 11 14 17 20 23 25 28 31 35 37 40 43 46 48 53 LCS_GDT L 138 L 138 7 9 29 3 7 7 8 10 11 14 17 20 23 25 28 31 35 37 40 43 46 48 49 LCS_GDT L 139 L 139 7 9 29 3 7 7 8 10 11 14 17 20 23 25 28 31 35 37 40 43 46 48 49 LCS_GDT H 140 H 140 5 9 29 3 4 5 8 10 11 14 17 20 23 25 28 31 35 37 40 43 46 48 49 LCS_GDT E 141 E 141 4 9 29 3 4 5 6 8 11 14 17 20 23 25 28 31 35 37 40 43 46 48 49 LCS_GDT D 142 D 142 4 9 29 3 4 5 6 7 11 14 16 20 23 25 28 31 35 37 40 43 46 48 49 LCS_GDT E 143 E 143 4 9 29 3 3 5 6 8 11 14 17 20 23 25 28 31 35 37 40 43 46 48 49 LCS_GDT R 144 R 144 4 7 29 3 3 5 6 10 11 14 17 20 23 25 26 30 35 37 40 43 46 48 49 LCS_GDT E 145 E 145 4 10 29 3 4 5 8 9 11 14 17 20 23 25 26 31 35 37 40 43 46 48 49 LCS_GDT T 146 T 146 4 10 29 3 4 5 8 9 10 13 17 20 23 25 28 31 35 37 40 43 46 48 49 LCS_GDT V 147 V 147 4 10 29 3 4 5 8 9 11 13 17 20 23 25 28 31 35 37 40 43 46 48 49 LCS_GDT T 148 T 148 5 10 29 3 4 5 8 9 11 13 17 20 23 25 28 31 35 37 40 43 46 48 49 LCS_GDT H 149 H 149 5 10 29 3 4 6 8 9 11 13 17 20 23 25 26 30 35 37 40 43 46 48 49 LCS_GDT R 150 R 150 5 10 29 3 4 6 8 9 11 13 17 20 23 25 28 31 35 37 40 43 46 48 53 LCS_GDT K 151 K 151 6 10 29 3 5 6 8 9 11 13 17 20 23 25 28 31 35 37 40 43 46 48 53 LCS_GDT L 152 L 152 6 10 29 3 5 6 8 9 11 13 15 20 23 25 28 31 35 37 40 43 46 48 49 LCS_GDT E 153 E 153 6 10 29 4 5 6 7 9 11 13 17 20 23 25 28 30 35 37 40 43 46 48 49 LCS_GDT P 154 P 154 6 10 29 4 5 6 7 9 11 13 15 18 23 24 26 27 33 37 40 43 46 48 49 LCS_GDT G 155 G 155 6 10 29 4 5 6 7 9 10 11 15 18 23 25 28 31 35 37 40 43 46 48 49 LCS_GDT A 156 A 156 6 10 29 4 5 6 7 9 10 11 13 15 23 25 28 31 35 37 40 43 46 48 49 LCS_GDT N 157 N 157 4 10 29 4 5 5 6 9 10 11 13 15 20 24 28 31 35 37 40 43 46 48 50 LCS_GDT L 158 L 158 4 10 28 4 5 5 5 8 10 11 13 15 20 24 28 31 35 37 40 44 46 49 52 LCS_GDT T 159 T 159 4 7 27 4 4 4 5 6 8 9 13 15 20 24 28 31 35 38 41 45 47 51 55 LCS_GDT S 160 S 160 4 7 26 4 4 5 6 6 8 9 13 17 20 25 31 32 35 38 41 46 48 51 55 LCS_GDT E 161 E 161 4 7 17 3 3 5 6 8 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT A 162 A 162 4 7 17 3 3 5 6 7 13 15 19 22 25 29 35 38 41 42 44 46 48 51 55 LCS_GDT A 163 A 163 4 7 14 3 3 5 6 6 8 10 11 13 14 21 31 38 41 42 44 46 48 51 55 LCS_GDT G 164 G 164 4 7 14 3 3 5 6 6 7 9 10 11 16 21 22 27 32 33 34 37 40 44 50 LCS_GDT G 165 G 165 4 7 14 3 3 5 6 6 9 14 17 20 22 24 28 29 32 35 37 44 45 49 52 LCS_GDT I 166 I 166 3 4 14 1 3 5 5 7 11 16 19 22 24 27 32 38 39 41 44 46 48 51 55 LCS_GDT E 167 E 167 3 3 14 1 4 5 6 8 10 14 17 20 22 25 28 32 36 39 43 46 48 51 55 LCS_GDT V 168 V 168 3 3 19 0 3 3 4 7 8 11 15 17 22 24 27 29 34 38 41 45 48 51 55 LCS_GDT L 169 L 169 4 5 19 4 5 5 7 10 12 13 16 17 20 20 23 28 31 36 40 43 46 50 53 LCS_GDT V 170 V 170 4 5 19 4 4 5 7 10 12 13 16 19 24 28 31 32 35 39 43 46 48 51 55 LCS_GDT L 171 L 171 4 5 19 4 4 5 6 10 12 13 16 17 20 24 31 32 35 38 40 45 48 51 54 LCS_GDT D 172 D 172 4 5 20 4 4 5 7 11 12 14 18 21 24 28 31 32 36 39 43 46 48 51 55 LCS_GDT G 173 G 173 4 5 20 3 4 5 9 10 13 16 19 21 25 29 32 38 39 42 44 46 48 51 55 LCS_GDT D 174 D 174 4 5 20 3 3 4 5 5 6 12 14 20 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT V 175 V 175 3 6 20 0 3 3 6 8 11 14 17 20 23 28 35 38 41 42 44 46 48 51 55 LCS_GDT T 176 T 176 3 6 20 2 3 3 5 7 11 14 17 20 23 28 35 38 41 42 44 46 48 51 55 LCS_GDT V 177 V 177 3 6 20 3 3 4 6 7 11 14 17 20 24 28 35 38 41 42 44 46 48 51 55 LCS_GDT N 178 N 178 3 6 20 3 3 4 5 7 9 13 15 18 20 22 25 29 32 35 37 41 43 47 50 LCS_GDT D 179 D 179 3 6 25 3 3 4 6 8 11 16 19 22 24 28 35 38 41 42 44 46 48 51 55 LCS_GDT E 180 E 180 3 6 26 3 3 3 5 8 11 16 19 22 24 28 35 38 41 42 44 46 48 51 55 LCS_GDT V 181 V 181 6 11 26 3 4 8 10 11 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT L 182 L 182 6 11 26 3 4 8 10 11 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT G 183 G 183 8 11 26 3 5 8 10 11 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT R 184 R 184 8 11 26 3 7 8 10 11 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT N 185 N 185 8 11 26 3 7 8 10 11 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT A 186 A 186 8 11 26 3 7 8 10 11 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT W 187 W 187 8 11 26 4 7 8 10 11 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT L 188 L 188 8 11 26 4 7 8 10 11 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT R 189 R 189 8 11 26 4 7 8 10 11 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT L 190 L 190 8 11 26 4 7 8 10 11 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT P 191 P 191 5 11 27 3 4 5 9 11 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT E 192 E 192 5 10 27 3 4 5 8 10 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT G 193 G 193 5 10 27 3 4 5 8 10 13 14 18 21 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT E 194 E 194 5 10 27 3 4 5 9 10 12 14 18 21 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT A 195 A 195 6 10 27 3 6 6 9 10 12 13 18 19 22 24 26 30 36 42 43 46 48 51 55 LCS_GDT L 196 L 196 6 10 27 4 6 6 9 10 12 13 18 19 22 24 31 36 41 42 44 46 48 51 55 LCS_GDT S 197 S 197 6 10 27 4 6 6 9 10 12 13 16 18 20 24 26 26 29 31 35 40 45 47 49 LCS_GDT A 198 A 198 6 10 27 4 6 6 9 10 12 13 18 19 22 24 31 36 41 42 44 45 48 51 55 LCS_GDT T 199 T 199 6 10 27 4 6 6 9 10 12 13 16 18 20 24 26 27 32 36 40 44 47 48 49 LCS_GDT A 200 A 200 6 10 27 4 6 6 9 10 12 13 18 19 22 28 35 37 41 42 44 45 48 51 55 LCS_GDT G 201 G 201 6 10 27 3 3 6 9 10 12 13 18 19 22 25 31 36 41 42 44 45 47 51 53 LCS_GDT A 202 A 202 4 10 27 3 3 5 7 8 12 13 18 19 22 28 35 37 41 42 44 45 48 51 55 LCS_GDT R 203 R 203 3 10 27 3 4 6 8 9 13 16 18 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT G 204 G 204 4 8 27 3 4 4 6 7 11 16 19 22 26 29 35 38 41 42 44 45 48 51 55 LCS_GDT A 205 A 205 4 8 27 3 4 5 6 9 11 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT K 206 K 206 4 8 27 3 4 4 6 9 12 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT I 207 I 207 4 8 27 3 4 5 6 8 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT W 208 W 208 4 8 27 3 4 5 6 8 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT M 209 M 209 4 8 27 3 4 5 6 8 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT K 210 K 210 4 8 27 3 3 5 6 7 9 13 15 16 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT T 211 T 211 4 8 27 3 3 5 6 8 9 10 15 15 23 29 35 37 41 42 44 46 48 51 54 LCS_GDT G 212 G 212 3 6 27 3 3 3 3 6 9 13 15 17 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT H 213 H 213 3 4 27 2 3 5 6 8 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 LCS_GDT L 214 L 214 3 4 27 0 3 5 6 9 11 14 18 21 24 28 32 38 41 42 44 46 48 51 55 LCS_GDT R 215 R 215 4 7 27 4 4 4 5 8 13 14 18 21 24 28 32 38 41 42 44 46 48 51 55 LCS_GDT F 216 F 216 4 7 27 4 4 4 5 6 11 12 18 21 24 28 32 38 41 42 44 46 48 51 55 LCS_GDT V 217 V 217 4 7 27 4 4 5 6 7 8 11 13 19 21 24 26 31 36 39 44 45 48 51 55 LCS_GDT R 218 R 218 4 7 27 4 4 5 6 7 8 11 13 19 21 24 26 26 36 38 41 45 48 51 55 LCS_GDT T 219 T 219 4 7 26 4 4 5 6 7 8 11 13 18 20 22 25 26 27 29 39 45 48 50 53 LCS_GDT P 220 P 220 4 7 26 4 4 5 6 7 8 11 13 13 16 19 21 26 26 29 30 32 39 41 52 LCS_GDT E 221 E 221 3 7 26 0 3 3 5 6 8 11 13 18 19 21 24 26 27 29 30 32 40 49 53 LCS_AVERAGE LCS_A: 12.89 ( 4.80 8.18 25.69 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 8 10 11 13 16 19 22 26 29 35 38 41 42 44 46 48 51 55 GDT PERCENT_AT 4.04 7.07 8.08 10.10 11.11 13.13 16.16 19.19 22.22 26.26 29.29 35.35 38.38 41.41 42.42 44.44 46.46 48.48 51.52 55.56 GDT RMS_LOCAL 0.16 0.67 0.93 1.24 1.48 2.25 2.68 2.94 3.34 3.88 4.06 4.71 4.85 5.20 5.21 5.36 5.86 5.87 6.27 6.84 GDT RMS_ALL_AT 20.12 24.87 14.51 14.80 14.73 15.35 15.48 15.71 16.51 17.09 16.93 17.40 16.83 17.56 17.28 17.37 15.36 16.34 15.63 14.89 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 123 M 123 31.834 4 0.073 0.073 34.403 0.000 0.000 LGA E 124 E 124 29.598 5 0.102 0.102 30.752 0.000 0.000 LGA A 125 A 125 33.983 1 0.341 0.341 34.639 0.000 0.000 LGA E 126 E 126 32.410 5 0.581 0.581 32.513 0.000 0.000 LGA L 127 L 127 29.705 4 0.631 0.631 31.110 0.000 0.000 LGA G 128 G 128 25.718 0 0.650 0.650 26.994 0.000 0.000 LGA A 129 A 129 20.886 1 0.531 0.531 22.909 0.000 0.000 LGA P 130 P 130 17.724 3 0.612 0.612 18.868 0.000 0.000 LGA V 131 V 131 11.995 3 0.157 0.157 13.952 0.119 0.068 LGA E 132 E 132 7.538 5 0.526 0.526 9.237 4.643 2.063 LGA G 133 G 133 13.284 0 0.612 0.612 13.326 0.000 0.000 LGA I 134 I 134 12.679 4 0.194 0.194 15.103 0.000 0.000 LGA S 135 S 135 15.761 2 0.062 0.062 16.480 0.000 0.000 LGA T 136 T 136 19.138 3 0.129 0.129 21.848 0.000 0.000 LGA S 137 S 137 21.678 2 0.071 0.071 22.724 0.000 0.000 LGA L 138 L 138 25.119 4 0.055 0.055 26.491 0.000 0.000 LGA L 139 L 139 25.547 4 0.603 0.603 29.462 0.000 0.000 LGA H 140 H 140 28.346 6 0.063 0.063 28.346 0.000 0.000 LGA E 141 E 141 28.751 5 0.077 0.077 32.912 0.000 0.000 LGA D 142 D 142 30.901 4 0.566 0.566 31.536 0.000 0.000 LGA E 143 E 143 32.177 5 0.691 0.691 32.177 0.000 0.000 LGA R 144 R 144 28.575 7 0.114 0.114 30.062 0.000 0.000 LGA E 145 E 145 22.195 5 0.632 0.632 24.837 0.000 0.000 LGA T 146 T 146 20.691 3 0.060 0.060 21.011 0.000 0.000 LGA V 147 V 147 19.124 3 0.116 0.116 19.416 0.000 0.000 LGA T 148 T 148 19.645 3 0.093 0.093 19.645 0.000 0.000 LGA H 149 H 149 18.973 6 0.084 0.084 19.756 0.000 0.000 LGA R 150 R 150 18.894 7 0.087 0.087 18.894 0.000 0.000 LGA K 151 K 151 19.238 5 0.079 0.079 19.594 0.000 0.000 LGA L 152 L 152 18.951 4 0.100 0.100 19.107 0.000 0.000 LGA E 153 E 153 19.490 5 0.148 0.148 19.490 0.000 0.000 LGA P 154 P 154 19.452 3 0.050 0.050 19.636 0.000 0.000 LGA G 155 G 155 20.126 0 0.116 0.116 20.126 0.000 0.000 LGA A 156 A 156 19.004 1 0.681 0.681 19.501 0.000 0.000 LGA N 157 N 157 15.483 4 0.221 0.221 16.250 0.000 0.000 LGA L 158 L 158 13.909 4 0.069 0.069 14.882 0.000 0.000 LGA T 159 T 159 9.984 3 0.166 0.166 10.972 0.595 0.340 LGA S 160 S 160 8.768 2 0.646 0.646 9.188 9.643 6.429 LGA E 161 E 161 3.588 5 0.480 0.480 4.812 51.071 22.698 LGA A 162 A 162 4.335 1 0.200 0.200 6.510 32.262 25.810 LGA A 163 A 163 8.799 1 0.541 0.541 10.454 4.048 3.238 LGA G 164 G 164 13.888 0 0.287 0.287 15.153 0.000 0.000 LGA G 165 G 165 11.949 0 0.564 0.564 12.016 0.000 0.000 LGA I 166 I 166 6.909 4 0.612 0.612 8.452 7.500 3.750 LGA E 167 E 167 8.951 5 0.614 0.614 9.412 3.214 1.429 LGA V 168 V 168 9.857 3 0.598 0.598 11.360 0.238 0.136 LGA L 169 L 169 11.100 4 0.563 0.563 11.100 0.476 0.238 LGA V 170 V 170 6.752 3 0.183 0.183 9.643 5.833 3.333 LGA L 171 L 171 10.517 4 0.475 0.475 10.517 1.786 0.893 LGA D 172 D 172 5.787 4 0.319 0.319 7.156 23.571 11.786 LGA G 173 G 173 3.175 0 0.247 0.247 3.869 45.000 45.000 LGA D 174 D 174 6.453 4 0.413 0.413 8.262 15.833 7.917 LGA V 175 V 175 9.189 3 0.624 0.624 10.514 2.262 1.293 LGA T 176 T 176 9.666 3 0.121 0.121 10.376 0.357 0.204 LGA V 177 V 177 9.147 3 0.337 0.337 11.459 0.714 0.408 LGA N 178 N 178 13.738 4 0.436 0.436 14.517 0.000 0.000 LGA D 179 D 179 9.997 4 0.074 0.074 10.890 1.190 0.595 LGA E 180 E 180 8.974 5 0.602 0.602 9.443 5.595 2.487 LGA V 181 V 181 3.214 3 0.627 0.627 4.331 54.286 31.020 LGA L 182 L 182 2.431 4 0.174 0.174 3.809 55.595 27.798 LGA G 183 G 183 2.980 0 0.069 0.069 2.980 71.310 71.310 LGA R 184 R 184 1.439 7 0.665 0.665 4.505 60.595 22.035 LGA N 185 N 185 2.476 4 0.552 0.552 2.476 68.810 34.405 LGA A 186 A 186 2.731 1 0.062 0.062 3.338 53.571 42.857 LGA W 187 W 187 2.864 10 0.042 0.042 2.864 57.143 16.327 LGA L 188 L 188 2.474 4 0.057 0.057 3.144 57.262 28.631 LGA R 189 R 189 3.582 7 0.402 0.402 3.582 46.667 16.970 LGA L 190 L 190 3.667 4 0.681 0.681 5.614 37.857 18.929 LGA P 191 P 191 1.502 3 0.080 0.080 2.525 71.071 40.612 LGA E 192 E 192 3.755 5 0.617 0.617 6.924 38.929 17.302 LGA G 193 G 193 6.344 0 0.200 0.200 9.325 15.000 15.000 LGA E 194 E 194 6.144 5 0.610 0.610 6.892 17.262 7.672 LGA A 195 A 195 10.148 1 0.194 0.194 10.714 0.833 0.667 LGA L 196 L 196 9.241 4 0.074 0.074 11.415 0.714 0.357 LGA S 197 S 197 13.589 2 0.047 0.047 13.589 0.000 0.000 LGA A 198 A 198 10.049 1 0.064 0.064 12.162 0.000 0.000 LGA T 199 T 199 13.616 3 0.032 0.032 13.616 0.000 0.000 LGA A 200 A 200 10.058 1 0.085 0.085 12.127 0.000 0.000 LGA G 201 G 201 12.180 0 0.685 0.685 12.180 0.000 0.000 LGA A 202 A 202 9.670 1 0.599 0.599 10.462 1.667 1.333 LGA R 203 R 203 4.881 7 0.562 0.562 6.190 24.048 8.745 LGA G 204 G 204 8.054 0 0.672 0.672 9.939 5.833 5.833 LGA A 205 A 205 6.797 1 0.071 0.071 6.816 25.357 20.286 LGA K 206 K 206 3.907 5 0.090 0.090 5.210 40.714 18.095 LGA I 207 I 207 2.539 4 0.180 0.180 2.750 60.952 30.476 LGA W 208 W 208 2.570 10 0.068 0.068 2.739 59.048 16.871 LGA M 209 M 209 2.724 4 0.145 0.145 4.058 50.595 25.298 LGA K 210 K 210 7.081 5 0.680 0.680 8.619 11.548 5.132 LGA T 211 T 211 8.224 3 0.086 0.086 8.224 7.976 4.558 LGA G 212 G 212 6.864 0 0.644 0.644 7.453 13.690 13.690 LGA H 213 H 213 2.794 6 0.646 0.646 4.321 45.238 18.095 LGA L 214 L 214 6.904 4 0.659 0.659 8.722 13.095 6.548 LGA R 215 R 215 6.135 7 0.617 0.617 6.135 20.357 7.403 LGA F 216 F 216 7.000 7 0.532 0.532 7.891 10.952 3.983 LGA V 217 V 217 11.121 3 0.599 0.599 12.020 0.119 0.068 LGA R 218 R 218 14.669 7 0.125 0.125 17.855 0.000 0.000 LGA T 219 T 219 21.150 3 0.047 0.047 21.780 0.000 0.000 LGA P 220 P 220 24.497 3 0.125 0.125 27.080 0.000 0.000 LGA E 221 E 221 26.994 5 0.061 0.061 28.760 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 99 396 396 100.00 732 396 54.10 99 SUMMARY(RMSD_GDC): 12.654 12.573 12.573 13.273 7.257 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 99 99 4.0 19 2.94 20.202 17.246 0.625 LGA_LOCAL RMSD: 2.940 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.706 Number of assigned atoms: 99 Std_ASGN_ATOMS RMSD: 12.654 Standard rmsd on all 99 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.537645 * X + 0.554986 * Y + -0.634766 * Z + 59.090813 Y_new = -0.665095 * X + -0.741871 * Y + -0.085297 * Z + 33.919113 Z_new = -0.518253 * X + 0.376320 * Y + 0.767982 * Z + 19.516832 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.250623 0.544807 0.455625 [DEG: -128.9512 31.2151 26.1054 ] ZXZ: -1.437222 0.695111 -0.942746 [DEG: -82.3467 39.8270 -54.0154 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0582TS328_1-D2 REMARK 2: T0582-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0582TS328_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 99 99 4.0 19 2.94 17.246 12.65 REMARK ---------------------------------------------------------- MOLECULE T0582TS328_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0582 REMARK MODEL 1 REMARK PARENT 2q9j_A ATOM 465 N MET 123 29.741 -17.764 28.287 1.00 3.00 N ATOM 466 CA MET 123 31.141 -17.859 28.607 1.00 3.00 C ATOM 467 C MET 123 31.433 -17.244 29.964 1.00 3.00 C ATOM 468 O MET 123 32.169 -17.820 30.766 1.00 3.00 O ATOM 469 N GLU 124 30.828 -16.087 30.228 1.00 3.00 N ATOM 470 CA GLU 124 31.029 -15.385 31.487 1.00 3.00 C ATOM 471 C GLU 124 30.837 -16.269 32.695 1.00 3.00 C ATOM 472 O GLU 124 31.626 -16.223 33.665 1.00 3.00 O ATOM 473 N ALA 125 29.798 -17.097 32.631 1.00 3.00 N ATOM 474 CA ALA 125 29.482 -18.007 33.696 1.00 3.00 C ATOM 475 C ALA 125 29.775 -19.445 33.358 1.00 3.00 C ATOM 476 O ALA 125 29.101 -20.352 33.861 1.00 3.00 O ATOM 477 N GLU 126 30.773 -19.674 32.514 1.00 3.00 N ATOM 478 CA GLU 126 31.116 -21.025 32.118 1.00 3.00 C ATOM 479 C GLU 126 31.759 -21.842 33.217 1.00 3.00 C ATOM 480 O GLU 126 32.505 -21.308 34.041 1.00 3.00 O ATOM 481 N LEU 127 31.487 -23.142 33.217 1.00 3.00 N ATOM 482 CA LEU 127 32.023 -24.065 34.212 1.00 3.00 C ATOM 483 C LEU 127 33.530 -24.102 34.389 1.00 3.00 C ATOM 484 O LEU 127 34.018 -24.210 35.528 1.00 3.00 O ATOM 485 N GLY 128 34.276 -24.041 33.290 1.00 3.00 N ATOM 486 CA GLY 128 35.726 -24.122 33.374 1.00 3.00 C ATOM 487 C GLY 128 36.214 -22.698 33.384 1.00 3.00 C ATOM 488 O GLY 128 37.395 -22.454 33.605 1.00 3.00 O ATOM 489 N ALA 129 35.320 -21.745 33.172 1.00 3.00 N ATOM 490 CA ALA 129 35.653 -20.336 33.150 1.00 3.00 C ATOM 491 C ALA 129 34.901 -19.670 34.291 1.00 3.00 C ATOM 492 O ALA 129 34.622 -18.467 34.248 1.00 3.00 O ATOM 493 N PRO 130 34.600 -20.474 35.313 1.00 3.00 N ATOM 494 CA PRO 130 33.842 -19.995 36.464 1.00 3.00 C ATOM 495 C PRO 130 34.625 -19.891 37.783 1.00 3.00 C ATOM 496 O PRO 130 34.029 -19.720 38.839 1.00 3.00 O ATOM 497 N VAL 131 35.940 -20.024 37.732 1.00 9.00 N ATOM 498 CA VAL 131 36.720 -19.903 38.959 1.00 9.00 C ATOM 499 C VAL 131 38.103 -19.323 38.718 1.00 9.00 C ATOM 500 O VAL 131 39.060 -20.062 38.481 1.00 9.00 O ATOM 501 N GLU 132 38.212 -17.993 38.745 1.00 3.00 N ATOM 502 CA GLU 132 37.081 -17.098 38.992 1.00 3.00 C ATOM 503 C GLU 132 36.182 -16.916 37.752 1.00 3.00 C ATOM 504 O GLU 132 36.521 -17.364 36.656 1.00 3.00 O ATOM 505 N GLY 133 35.041 -16.279 37.946 1.00 3.00 N ATOM 506 CA GLY 133 34.112 -16.040 36.836 1.00 3.00 C ATOM 507 C GLY 133 34.756 -15.123 35.815 1.00 3.00 C ATOM 508 O GLY 133 35.214 -14.045 36.174 1.00 3.00 O ATOM 509 N ILE 134 34.808 -15.544 34.550 1.00 3.00 N ATOM 510 CA ILE 134 35.377 -14.657 33.519 1.00 3.00 C ATOM 511 C ILE 134 34.849 -13.540 32.660 1.00 3.00 C ATOM 512 O ILE 134 33.632 -13.422 32.434 1.00 3.00 O ATOM 513 N SER 135 35.763 -12.696 32.192 1.00 3.00 N ATOM 514 CA SER 135 35.421 -11.627 31.276 1.00 3.00 C ATOM 515 C SER 135 35.481 -12.183 29.859 1.00 3.00 C ATOM 516 O SER 135 36.523 -12.759 29.463 1.00 3.00 O ATOM 517 N THR 136 34.398 -12.041 29.103 1.00 3.00 N ATOM 518 CA THR 136 34.352 -12.574 27.745 1.00 3.00 C ATOM 519 C THR 136 34.560 -11.545 26.651 1.00 3.00 C ATOM 520 O THR 136 33.670 -10.725 26.370 1.00 3.00 O ATOM 521 N SER 137 35.735 -11.590 26.025 1.00 3.00 N ATOM 522 CA SER 137 36.032 -10.653 24.964 1.00 3.00 C ATOM 523 C SER 137 35.811 -11.207 23.566 1.00 3.00 C ATOM 524 O SER 137 36.145 -12.378 23.275 1.00 3.00 O ATOM 525 N LEU 138 35.223 -10.385 22.706 1.00 3.00 N ATOM 526 CA LEU 138 34.996 -10.742 21.320 1.00 3.00 C ATOM 527 C LEU 138 35.771 -9.790 20.463 1.00 3.00 C ATOM 528 O LEU 138 35.483 -8.582 20.431 1.00 3.00 O ATOM 529 N LEU 139 36.785 -10.322 19.794 1.00 3.00 N ATOM 530 CA LEU 139 37.675 -9.525 19.006 1.00 3.00 C ATOM 531 C LEU 139 37.675 -9.760 17.530 1.00 3.00 C ATOM 532 O LEU 139 37.782 -10.925 17.052 1.00 3.00 O ATOM 533 N HIS 140 37.543 -8.660 16.796 1.00 3.00 N ATOM 534 CA HIS 140 37.644 -8.691 15.377 1.00 3.00 C ATOM 535 C HIS 140 38.962 -8.086 15.011 1.00 3.00 C ATOM 536 O HIS 140 39.250 -6.942 15.391 1.00 3.00 O ATOM 537 N GLU 141 39.799 -8.839 14.317 1.00 3.00 N ATOM 538 CA GLU 141 41.073 -8.315 13.909 1.00 3.00 C ATOM 539 C GLU 141 40.973 -7.613 12.557 1.00 3.00 C ATOM 540 O GLU 141 40.578 -8.240 11.542 1.00 3.00 O ATOM 541 N ASP 142 41.273 -6.316 12.551 1.00 3.00 N ATOM 542 CA ASP 142 41.254 -5.500 11.346 1.00 3.00 C ATOM 543 C ASP 142 42.554 -5.670 10.591 1.00 3.00 C ATOM 544 O ASP 142 42.577 -5.797 9.362 1.00 3.00 O ATOM 545 N GLU 143 43.641 -5.649 11.355 1.00 3.00 N ATOM 546 CA GLU 143 44.990 -5.892 10.875 1.00 3.00 C ATOM 547 C GLU 143 45.892 -6.133 12.057 1.00 3.00 C ATOM 548 O GLU 143 45.407 -6.095 13.208 1.00 3.00 O ATOM 549 N ARG 144 47.175 -6.371 11.832 1.00 3.00 N ATOM 550 CA ARG 144 48.054 -6.684 12.925 1.00 3.00 C ATOM 551 C ARG 144 48.246 -5.623 13.996 1.00 3.00 C ATOM 552 O ARG 144 48.851 -5.908 15.060 1.00 3.00 O ATOM 553 N GLU 145 47.741 -4.421 13.754 1.00 3.00 N ATOM 554 CA GLU 145 47.870 -3.357 14.727 1.00 3.00 C ATOM 555 C GLU 145 46.558 -2.670 15.050 1.00 3.00 C ATOM 556 O GLU 145 46.528 -1.578 15.658 1.00 3.00 O ATOM 557 N THR 146 45.463 -3.310 14.671 1.00 3.00 N ATOM 558 CA THR 146 44.171 -2.739 14.899 1.00 3.00 C ATOM 559 C THR 146 43.074 -3.759 15.125 1.00 3.00 C ATOM 560 O THR 146 42.849 -4.637 14.281 1.00 3.00 O ATOM 561 N VAL 147 42.414 -3.692 16.274 1.00 3.00 N ATOM 562 CA VAL 147 41.308 -4.583 16.517 1.00 3.00 C ATOM 563 C VAL 147 40.096 -3.863 17.032 1.00 3.00 C ATOM 564 O VAL 147 40.201 -2.769 17.611 1.00 3.00 O ATOM 565 N THR 148 38.937 -4.456 16.807 1.00 3.00 N ATOM 566 CA THR 148 37.712 -3.940 17.357 1.00 3.00 C ATOM 567 C THR 148 37.279 -4.926 18.404 1.00 3.00 C ATOM 568 O THR 148 37.384 -6.141 18.180 1.00 3.00 O ATOM 569 N HIS 149 36.803 -4.444 19.543 1.00 3.00 N ATOM 570 CA HIS 149 36.487 -5.352 20.599 1.00 3.00 C ATOM 571 C HIS 149 35.226 -5.073 21.364 1.00 3.00 C ATOM 572 O HIS 149 34.838 -3.913 21.561 1.00 3.00 O ATOM 573 N ARG 150 34.586 -6.143 21.804 1.00 3.00 N ATOM 574 CA ARG 150 33.423 -6.039 22.643 1.00 3.00 C ATOM 575 C ARG 150 33.623 -6.958 23.788 1.00 3.00 C ATOM 576 O ARG 150 34.213 -8.039 23.610 1.00 3.00 O ATOM 577 N LYS 151 33.209 -6.548 24.979 1.00 3.00 N ATOM 578 CA LYS 151 33.418 -7.377 26.136 1.00 3.00 C ATOM 579 C LYS 151 32.241 -7.515 27.073 1.00 3.00 C ATOM 580 O LYS 151 31.611 -6.517 27.481 1.00 3.00 O ATOM 581 N LEU 152 31.949 -8.757 27.425 1.00 3.00 N ATOM 582 CA LEU 152 30.906 -9.044 28.355 1.00 3.00 C ATOM 583 C LEU 152 31.559 -9.214 29.707 1.00 3.00 C ATOM 584 O LEU 152 32.121 -10.286 30.014 1.00 3.00 O ATOM 585 N GLU 153 31.535 -8.137 30.493 1.00 3.00 N ATOM 586 CA GLU 153 32.185 -8.092 31.806 1.00 3.00 C ATOM 587 C GLU 153 31.719 -9.081 32.864 1.00 3.00 C ATOM 588 O GLU 153 30.510 -9.275 33.070 1.00 3.00 O ATOM 589 N PRO 154 32.675 -9.712 33.537 1.00 3.00 N ATOM 590 CA PRO 154 32.361 -10.650 34.600 1.00 3.00 C ATOM 591 C PRO 154 31.357 -10.056 35.587 1.00 3.00 C ATOM 592 O PRO 154 31.605 -8.996 36.164 1.00 3.00 O ATOM 593 N GLY 155 30.213 -10.712 35.751 1.00 3.00 N ATOM 594 CA GLY 155 29.193 -10.217 36.658 1.00 3.00 C ATOM 595 C GLY 155 28.628 -8.842 36.339 1.00 3.00 C ATOM 596 O GLY 155 28.007 -8.215 37.208 1.00 3.00 O ATOM 597 N ALA 156 28.811 -8.356 35.115 1.00 3.00 N ATOM 598 CA ALA 156 28.304 -7.031 34.749 1.00 3.00 C ATOM 599 C ALA 156 27.805 -6.888 33.310 1.00 3.00 C ATOM 600 O ALA 156 27.207 -5.856 32.943 1.00 3.00 O ATOM 601 N ASN 157 28.049 -7.897 32.482 1.00 3.00 N ATOM 602 CA ASN 157 27.588 -7.825 31.108 1.00 3.00 C ATOM 603 C ASN 157 28.388 -6.857 30.267 1.00 3.00 C ATOM 604 O ASN 157 29.464 -6.383 30.684 1.00 3.00 O ATOM 605 N LEU 158 27.872 -6.540 29.089 1.00 3.00 N ATOM 606 CA LEU 158 28.576 -5.658 28.201 1.00 3.00 C ATOM 607 C LEU 158 28.678 -4.230 28.667 1.00 3.00 C ATOM 608 O LEU 158 27.696 -3.652 29.172 1.00 3.00 O ATOM 609 N THR 159 29.868 -3.652 28.518 1.00 3.00 N ATOM 610 CA THR 159 30.096 -2.266 28.879 1.00 3.00 C ATOM 611 C THR 159 30.684 -1.475 27.741 1.00 3.00 C ATOM 612 O THR 159 31.098 -2.058 26.730 1.00 3.00 O ATOM 613 N SER 160 30.712 -0.155 27.876 1.00 3.00 N ATOM 614 CA SER 160 31.278 0.687 26.841 1.00 3.00 C ATOM 615 C SER 160 32.782 0.536 26.704 1.00 3.00 C ATOM 616 O SER 160 33.360 0.827 25.639 1.00 3.00 O ATOM 617 N GLU 161 33.423 0.070 27.772 1.00 3.00 N ATOM 618 CA GLU 161 34.853 -0.101 27.742 1.00 3.00 C ATOM 619 C GLU 161 35.438 -0.896 28.880 1.00 3.00 C ATOM 620 O GLU 161 35.128 -0.668 30.076 1.00 3.00 O ATOM 621 N ALA 162 36.279 -1.851 28.509 1.00 3.00 N ATOM 622 CA ALA 162 36.974 -2.671 29.462 1.00 3.00 C ATOM 623 C ALA 162 38.477 -2.607 29.255 1.00 3.00 C ATOM 624 O ALA 162 39.041 -3.264 28.345 1.00 3.00 O ATOM 625 N ALA 163 39.125 -1.791 30.072 1.00 3.00 N ATOM 626 CA ALA 163 40.552 -1.636 29.971 1.00 3.00 C ATOM 627 C ALA 163 41.238 -2.974 29.988 1.00 3.00 C ATOM 628 O ALA 163 41.991 -3.310 29.043 1.00 3.00 O ATOM 629 N GLY 164 40.992 -3.751 31.037 1.00 3.00 N ATOM 630 CA GLY 164 41.618 -5.032 31.127 1.00 3.00 C ATOM 631 C GLY 164 41.248 -5.940 29.975 1.00 3.00 C ATOM 632 O GLY 164 42.055 -6.788 29.549 1.00 3.00 O ATOM 633 N GLY 165 40.032 -5.764 29.462 1.00 3.00 N ATOM 634 CA GLY 165 39.577 -6.570 28.343 1.00 3.00 C ATOM 635 C GLY 165 40.472 -6.286 27.151 1.00 3.00 C ATOM 636 O GLY 165 40.956 -7.215 26.467 1.00 3.00 O ATOM 637 N ILE 166 40.694 -5.001 26.903 1.00 3.00 N ATOM 638 CA ILE 166 41.537 -4.570 25.826 1.00 3.00 C ATOM 639 C ILE 166 42.936 -5.183 25.921 1.00 3.00 C ATOM 640 O ILE 166 43.476 -5.697 24.921 1.00 3.00 O ATOM 641 N GLU 167 43.513 -5.141 27.121 1.00 3.00 N ATOM 642 CA GLU 167 44.813 -5.728 27.369 1.00 3.00 C ATOM 643 C GLU 167 44.855 -7.218 27.042 1.00 3.00 C ATOM 644 O GLU 167 45.767 -7.712 26.316 1.00 3.00 O ATOM 645 N VAL 168 43.859 -7.927 27.563 1.00 3.00 N ATOM 646 CA VAL 168 43.745 -9.336 27.386 1.00 3.00 C ATOM 647 C VAL 168 43.647 -9.756 25.941 1.00 3.00 C ATOM 648 O VAL 168 44.331 -10.704 25.517 1.00 3.00 O ATOM 649 N LEU 169 42.798 -9.065 25.183 1.00 3.00 N ATOM 650 CA LEU 169 42.642 -9.381 23.773 1.00 3.00 C ATOM 651 C LEU 169 44.161 -9.400 23.597 1.00 3.00 C ATOM 652 O LEU 169 44.670 -9.859 22.574 1.00 3.00 O ATOM 653 N VAL 170 44.872 -8.898 24.590 1.00 3.00 N ATOM 654 CA VAL 170 46.329 -8.816 24.551 1.00 3.00 C ATOM 655 C VAL 170 47.057 -10.105 24.893 1.00 3.00 C ATOM 656 O VAL 170 47.487 -10.300 26.036 1.00 3.00 O ATOM 657 N LEU 171 47.186 -10.981 23.902 1.00 3.00 N ATOM 658 CA LEU 171 47.878 -12.247 24.083 1.00 3.00 C ATOM 659 C LEU 171 49.364 -11.983 24.351 1.00 3.00 C ATOM 660 O LEU 171 50.239 -12.370 23.556 1.00 3.00 O ATOM 661 N ASP 172 49.648 -11.312 25.460 1.00 9.00 N ATOM 662 CA ASP 172 51.014 -10.973 25.845 1.00 9.00 C ATOM 663 C ASP 172 51.874 -12.220 26.089 1.00 9.00 C ATOM 664 O ASP 172 51.957 -12.711 27.222 1.00 9.00 O ATOM 665 N GLY 173 52.507 -12.713 25.025 1.00 9.00 N ATOM 666 CA GLY 173 53.372 -13.886 25.100 1.00 9.00 C ATOM 667 C GLY 173 53.982 -14.114 23.715 1.00 9.00 C ATOM 668 O GLY 173 53.340 -13.840 22.695 1.00 9.00 O ATOM 669 N ASP 174 55.211 -14.607 23.697 1.00 9.00 N ATOM 670 CA ASP 174 55.945 -14.879 22.471 1.00 9.00 C ATOM 671 C ASP 174 56.211 -13.566 21.695 1.00 9.00 C ATOM 672 O ASP 174 57.261 -12.949 21.889 1.00 9.00 O ATOM 673 N VAL 175 55.269 -13.115 20.831 1.00 3.00 N ATOM 674 CA VAL 175 55.610 -11.856 20.162 1.00 3.00 C ATOM 675 C VAL 175 55.629 -10.569 20.996 1.00 3.00 C ATOM 676 O VAL 175 56.582 -9.800 20.901 1.00 3.00 O ATOM 677 N THR 176 54.587 -10.306 21.826 1.00 3.00 N ATOM 678 CA THR 176 53.333 -11.009 22.141 1.00 3.00 C ATOM 679 C THR 176 52.218 -10.717 21.143 1.00 3.00 C ATOM 680 O THR 176 52.262 -9.734 20.401 1.00 3.00 O ATOM 681 N VAL 177 51.196 -11.575 21.139 1.00 3.00 N ATOM 682 CA VAL 177 50.076 -11.426 20.207 1.00 3.00 C ATOM 683 C VAL 177 50.646 -12.846 20.427 1.00 3.00 C ATOM 684 O VAL 177 51.460 -13.353 19.640 1.00 3.00 O ATOM 685 N ASN 178 50.160 -13.485 21.486 1.00 3.00 N ATOM 686 CA ASN 178 50.525 -14.840 21.817 1.00 3.00 C ATOM 687 C ASN 178 50.306 -15.789 20.651 1.00 3.00 C ATOM 688 O ASN 178 51.154 -16.665 20.367 1.00 3.00 O ATOM 689 N ASP 179 49.178 -15.615 19.972 1.00 3.00 N ATOM 690 CA ASP 179 48.828 -16.441 18.829 1.00 3.00 C ATOM 691 C ASP 179 49.521 -16.078 17.528 1.00 3.00 C ATOM 692 O ASP 179 49.336 -16.774 16.506 1.00 3.00 O ATOM 693 N GLU 180 50.306 -14.999 17.542 1.00 3.00 N ATOM 694 CA GLU 180 51.009 -14.566 16.342 1.00 3.00 C ATOM 695 C GLU 180 50.161 -13.802 15.336 1.00 3.00 C ATOM 696 O GLU 180 50.603 -13.556 14.176 1.00 3.00 O ATOM 697 N VAL 181 48.952 -13.418 15.739 1.00 3.00 N ATOM 698 CA VAL 181 48.072 -12.685 14.839 1.00 3.00 C ATOM 699 C VAL 181 48.173 -11.183 14.958 1.00 3.00 C ATOM 700 O VAL 181 47.650 -10.448 14.119 1.00 3.00 O ATOM 701 N LEU 182 48.859 -10.715 15.992 1.00 3.00 N ATOM 702 CA LEU 182 49.000 -9.300 16.202 1.00 3.00 C ATOM 703 C LEU 182 50.416 -8.851 16.447 1.00 3.00 C ATOM 704 O LEU 182 51.250 -9.644 16.947 1.00 3.00 O ATOM 705 N GLY 183 50.705 -7.594 16.108 1.00 3.00 N ATOM 706 CA GLY 183 52.013 -7.026 16.385 1.00 3.00 C ATOM 707 C GLY 183 52.092 -6.560 17.833 1.00 3.00 C ATOM 708 O GLY 183 51.119 -6.717 18.580 1.00 3.00 O ATOM 709 N ARG 184 53.207 -5.961 18.231 1.00 3.00 N ATOM 710 CA ARG 184 53.398 -5.558 19.617 1.00 3.00 C ATOM 711 C ARG 184 52.794 -4.248 20.076 1.00 3.00 C ATOM 712 O ARG 184 52.819 -3.932 21.279 1.00 3.00 O ATOM 713 N ASN 185 52.283 -3.471 19.137 1.00 3.00 N ATOM 714 CA ASN 185 51.612 -2.233 19.449 1.00 3.00 C ATOM 715 C ASN 185 50.282 -2.229 18.719 1.00 3.00 C ATOM 716 O ASN 185 50.242 -2.167 17.486 1.00 3.00 O ATOM 717 N ALA 186 49.188 -2.321 19.457 1.00 3.00 N ATOM 718 CA ALA 186 47.917 -2.420 18.835 1.00 3.00 C ATOM 719 C ALA 186 46.880 -1.407 19.267 1.00 3.00 C ATOM 720 O ALA 186 46.712 -1.125 20.472 1.00 3.00 O ATOM 721 N TRP 187 46.178 -0.849 18.291 1.00 3.00 N ATOM 722 CA TRP 187 45.102 0.044 18.618 1.00 3.00 C ATOM 723 C TRP 187 43.850 -0.761 18.869 1.00 3.00 C ATOM 724 O TRP 187 43.459 -1.598 18.022 1.00 3.00 O ATOM 725 N LEU 188 43.227 -0.562 20.017 1.00 3.00 N ATOM 726 CA LEU 188 42.023 -1.273 20.302 1.00 3.00 C ATOM 727 C LEU 188 40.803 -0.365 20.312 1.00 3.00 C ATOM 728 O LEU 188 40.760 0.621 21.081 1.00 3.00 O ATOM 729 N ARG 189 39.820 -0.676 19.474 1.00 3.00 N ATOM 730 CA ARG 189 38.602 0.101 19.447 1.00 3.00 C ATOM 731 C ARG 189 37.091 0.002 19.273 1.00 3.00 C ATOM 732 O ARG 189 36.539 0.420 18.252 1.00 3.00 O ATOM 733 N LEU 190 36.431 -0.542 20.290 1.00 3.00 N ATOM 734 CA LEU 190 34.980 -0.731 20.314 1.00 3.00 C ATOM 735 C LEU 190 34.154 0.528 20.511 1.00 3.00 C ATOM 736 O LEU 190 32.946 0.537 20.255 1.00 3.00 O ATOM 737 N PRO 191 34.774 1.559 21.054 1.00 3.00 N ATOM 738 CA PRO 191 34.102 2.816 21.319 1.00 3.00 C ATOM 739 C PRO 191 35.193 3.852 21.444 1.00 3.00 C ATOM 740 O PRO 191 36.366 3.519 21.616 1.00 3.00 O ATOM 741 N GLU 192 34.796 5.117 21.419 1.00 9.00 N ATOM 742 CA GLU 192 35.739 6.215 21.541 1.00 9.00 C ATOM 743 C GLU 192 36.406 6.144 22.916 1.00 9.00 C ATOM 744 O GLU 192 37.599 6.437 23.049 1.00 9.00 O ATOM 745 N GLY 193 35.651 5.725 23.930 1.00 3.00 N ATOM 746 CA GLY 193 36.190 5.596 25.292 1.00 3.00 C ATOM 747 C GLY 193 37.312 4.553 25.295 1.00 3.00 C ATOM 748 O GLY 193 38.416 4.810 25.780 1.00 3.00 O ATOM 749 N GLU 194 37.023 3.381 24.744 1.00 3.00 N ATOM 750 CA GLU 194 37.992 2.300 24.658 1.00 3.00 C ATOM 751 C GLU 194 39.219 2.634 23.821 1.00 3.00 C ATOM 752 O GLU 194 40.338 2.363 24.243 1.00 3.00 O ATOM 753 N ALA 195 39.001 3.200 22.631 1.00 3.00 N ATOM 754 CA ALA 195 40.093 3.576 21.728 1.00 3.00 C ATOM 755 C ALA 195 41.218 3.587 22.748 1.00 3.00 C ATOM 756 O ALA 195 41.376 4.544 23.535 1.00 3.00 O ATOM 757 N LEU 196 41.989 2.509 22.746 1.00 3.00 N ATOM 758 CA LEU 196 43.137 2.376 23.606 1.00 3.00 C ATOM 759 C LEU 196 44.329 1.818 22.853 1.00 3.00 C ATOM 760 O LEU 196 44.178 1.040 21.869 1.00 3.00 O ATOM 761 N SER 197 45.520 2.212 23.262 1.00 3.00 N ATOM 762 CA SER 197 46.678 1.665 22.638 1.00 3.00 C ATOM 763 C SER 197 47.342 0.668 23.552 1.00 3.00 C ATOM 764 O SER 197 47.692 1.015 24.693 1.00 3.00 O ATOM 765 N ALA 198 47.480 -0.576 23.101 1.00 3.00 N ATOM 766 CA ALA 198 48.120 -1.589 23.924 1.00 3.00 C ATOM 767 C ALA 198 49.516 -1.925 23.435 1.00 3.00 C ATOM 768 O ALA 198 49.745 -2.078 22.219 1.00 3.00 O ATOM 769 N THR 199 50.467 -2.004 24.355 1.00 3.00 N ATOM 770 CA THR 199 51.832 -2.341 23.998 1.00 3.00 C ATOM 771 C THR 199 52.354 -3.465 24.848 1.00 3.00 C ATOM 772 O THR 199 52.275 -3.408 26.090 1.00 3.00 O ATOM 773 N ALA 200 52.871 -4.499 24.199 1.00 3.00 N ATOM 774 CA ALA 200 53.423 -5.639 24.896 1.00 3.00 C ATOM 775 C ALA 200 54.524 -6.317 24.110 1.00 3.00 C ATOM 776 O ALA 200 54.304 -6.773 22.969 1.00 3.00 O ATOM 777 N GLY 201 55.717 -6.364 24.689 1.00 3.00 N ATOM 778 CA GLY 201 56.843 -6.978 24.019 1.00 3.00 C ATOM 779 C GLY 201 56.974 -8.471 24.225 1.00 3.00 C ATOM 780 O GLY 201 57.993 -9.073 23.857 1.00 3.00 O ATOM 781 N ALA 202 55.948 -9.076 24.819 1.00 3.00 N ATOM 782 CA ALA 202 55.953 -10.511 25.003 1.00 3.00 C ATOM 783 C ALA 202 56.423 -11.032 26.342 1.00 3.00 C ATOM 784 O ALA 202 56.590 -10.270 27.326 1.00 3.00 O ATOM 785 N ARG 203 56.630 -12.345 26.383 1.00 3.00 N ATOM 786 CA ARG 203 57.076 -13.028 27.570 1.00 3.00 C ATOM 787 C ARG 203 58.286 -12.382 28.243 1.00 3.00 C ATOM 788 O ARG 203 59.323 -12.105 27.597 1.00 3.00 O ATOM 789 N GLY 204 58.130 -12.108 29.535 1.00 3.00 N ATOM 790 CA GLY 204 59.171 -11.470 30.317 1.00 3.00 C ATOM 791 C GLY 204 58.963 -9.969 30.412 1.00 3.00 C ATOM 792 O GLY 204 59.695 -9.273 31.149 1.00 3.00 O ATOM 793 N ALA 205 57.978 -9.456 29.678 1.00 3.00 N ATOM 794 CA ALA 205 57.686 -8.031 29.672 1.00 3.00 C ATOM 795 C ALA 205 56.319 -7.678 30.198 1.00 3.00 C ATOM 796 O ALA 205 55.353 -8.447 30.016 1.00 3.00 O ATOM 797 N LYS 206 56.193 -6.504 30.839 1.00 3.00 N ATOM 798 CA LYS 206 54.881 -6.105 31.354 1.00 3.00 C ATOM 799 C LYS 206 54.114 -5.549 30.170 1.00 3.00 C ATOM 800 O LYS 206 54.735 -5.128 29.172 1.00 3.00 O ATOM 801 N ILE 207 52.784 -5.546 30.258 1.00 3.00 N ATOM 802 CA ILE 207 51.943 -5.019 29.204 1.00 3.00 C ATOM 803 C ILE 207 52.187 -3.597 29.666 1.00 3.00 C ATOM 804 O ILE 207 52.497 -3.339 30.829 1.00 3.00 O ATOM 805 N TRP 208 52.071 -2.666 28.725 1.00 3.00 N ATOM 806 CA TRP 208 52.242 -1.245 29.003 1.00 3.00 C ATOM 807 C TRP 208 51.089 -0.545 28.300 1.00 3.00 C ATOM 808 O TRP 208 50.866 -0.759 27.112 1.00 3.00 O ATOM 809 N MET 209 50.317 0.246 29.045 1.00 3.00 N ATOM 810 CA MET 209 49.248 1.004 28.420 1.00 3.00 C ATOM 811 C MET 209 49.970 2.176 27.780 1.00 3.00 C ATOM 812 O MET 209 50.314 3.151 28.451 1.00 3.00 O ATOM 813 N LYS 210 50.295 2.015 26.497 1.00 9.00 N ATOM 814 CA LYS 210 51.024 3.030 25.752 1.00 9.00 C ATOM 815 C LYS 210 50.202 4.244 25.323 1.00 9.00 C ATOM 816 O LYS 210 50.755 5.240 24.847 1.00 9.00 O ATOM 817 N THR 211 48.882 4.165 25.496 1.00 3.00 N ATOM 818 CA THR 211 47.980 5.257 25.145 1.00 3.00 C ATOM 819 C THR 211 46.625 5.098 25.828 1.00 3.00 C ATOM 820 O THR 211 46.012 4.030 25.791 1.00 3.00 O ATOM 821 N GLY 212 46.180 6.172 26.484 1.00 3.00 N ATOM 822 CA GLY 212 44.877 6.206 27.140 1.00 3.00 C ATOM 823 C GLY 212 44.586 7.624 27.578 1.00 3.00 C ATOM 824 O GLY 212 45.301 8.189 28.406 1.00 3.00 O ATOM 825 N HIS 213 43.538 8.203 27.014 1.00 3.00 N ATOM 826 CA HIS 213 43.160 9.556 27.350 1.00 3.00 C ATOM 827 C HIS 213 42.105 9.722 28.404 1.00 3.00 C ATOM 828 O HIS 213 41.256 8.855 28.611 1.00 3.00 O ATOM 829 N LEU 214 42.157 10.882 29.044 1.00 3.00 N ATOM 830 CA LEU 214 41.203 11.323 30.055 1.00 3.00 C ATOM 831 C LEU 214 41.020 12.827 29.917 1.00 3.00 C ATOM 832 O LEU 214 42.020 13.553 29.795 1.00 3.00 O ATOM 833 N ARG 215 39.779 13.302 29.939 1.00 3.00 N ATOM 834 CA ARG 215 39.520 14.716 29.763 1.00 3.00 C ATOM 835 C ARG 215 38.809 15.418 30.917 1.00 3.00 C ATOM 836 O ARG 215 37.771 14.937 31.411 1.00 3.00 O ATOM 837 N PHE 216 39.369 16.534 31.366 1.00 3.00 N ATOM 838 CA PHE 216 38.738 17.336 32.428 1.00 3.00 C ATOM 839 C PHE 216 37.646 18.209 31.843 1.00 3.00 C ATOM 840 O PHE 216 37.877 18.908 30.844 1.00 3.00 O ATOM 841 N VAL 217 36.450 18.166 32.411 1.00 3.00 N ATOM 842 CA VAL 217 35.366 18.971 31.871 1.00 3.00 C ATOM 843 C VAL 217 35.076 20.236 32.667 1.00 3.00 C ATOM 844 O VAL 217 34.984 21.334 32.096 1.00 3.00 O ATOM 845 N ARG 218 34.914 20.103 33.976 1.00 3.00 N ATOM 846 CA ARG 218 34.679 21.250 34.811 1.00 3.00 C ATOM 847 C ARG 218 34.865 20.918 36.257 1.00 3.00 C ATOM 848 O ARG 218 35.022 19.748 36.610 1.00 3.00 O ATOM 849 N THR 219 34.899 21.950 37.086 1.00 3.00 N ATOM 850 CA THR 219 35.029 21.803 38.506 1.00 3.00 C ATOM 851 C THR 219 33.732 22.153 39.165 1.00 3.00 C ATOM 852 O THR 219 33.044 23.081 38.724 1.00 3.00 O ATOM 853 N PRO 220 33.355 21.418 40.195 1.00 3.00 N ATOM 854 CA PRO 220 32.099 21.720 40.844 1.00 3.00 C ATOM 855 C PRO 220 32.176 21.813 42.353 1.00 3.00 C ATOM 856 O PRO 220 33.121 21.296 42.998 1.00 3.00 O ATOM 857 N GLU 221 31.191 22.499 42.917 1.00 3.00 N ATOM 858 CA GLU 221 31.065 22.659 44.339 1.00 3.00 C ATOM 859 C GLU 221 29.671 22.303 44.760 1.00 3.00 C ATOM 860 O GLU 221 28.693 22.832 44.190 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 396 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 84.67 38.8 196 100.0 196 ARMSMC SECONDARY STRUCTURE . . 76.58 45.4 108 100.0 108 ARMSMC SURFACE . . . . . . . . 86.85 36.7 128 100.0 128 ARMSMC BURIED . . . . . . . . 80.41 42.6 68 100.0 68 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 76 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 68 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 47 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 51 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 37 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 40 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 22 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 9 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.65 (Number of atoms: 99) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.65 99 100.0 99 CRMSCA CRN = ALL/NP . . . . . 0.1278 CRMSCA SECONDARY STRUCTURE . . 11.33 54 100.0 54 CRMSCA SURFACE . . . . . . . . 13.27 65 100.0 65 CRMSCA BURIED . . . . . . . . 11.38 34 100.0 34 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.57 396 81.8 484 CRMSMC SECONDARY STRUCTURE . . 11.42 216 80.9 267 CRMSMC SURFACE . . . . . . . . 13.10 260 81.8 318 CRMSMC BURIED . . . . . . . . 11.49 136 81.9 166 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 336 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 278 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 198 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 236 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 100 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.57 396 54.1 732 CRMSALL SECONDARY STRUCTURE . . 11.42 216 52.2 414 CRMSALL SURFACE . . . . . . . . 13.10 260 52.4 496 CRMSALL BURIED . . . . . . . . 11.49 136 57.6 236 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.533 0.535 0.275 99 100.0 99 ERRCA SECONDARY STRUCTURE . . 7.505 0.506 0.262 54 100.0 54 ERRCA SURFACE . . . . . . . . 9.013 0.541 0.283 65 100.0 65 ERRCA BURIED . . . . . . . . 7.615 0.523 0.261 34 100.0 34 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.440 0.533 0.274 396 81.8 484 ERRMC SECONDARY STRUCTURE . . 7.605 0.513 0.268 216 80.9 267 ERRMC SURFACE . . . . . . . . 8.800 0.535 0.278 260 81.8 318 ERRMC BURIED . . . . . . . . 7.753 0.529 0.266 136 81.9 166 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 336 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 278 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 198 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 236 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 100 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.440 0.533 0.274 396 54.1 732 ERRALL SECONDARY STRUCTURE . . 7.605 0.513 0.268 216 52.2 414 ERRALL SURFACE . . . . . . . . 8.800 0.535 0.278 260 52.4 496 ERRALL BURIED . . . . . . . . 7.753 0.529 0.266 136 57.6 236 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 6 42 99 99 DISTCA CA (P) 0.00 0.00 0.00 6.06 42.42 99 DISTCA CA (RMS) 0.00 0.00 0.00 4.18 7.80 DISTCA ALL (N) 0 1 3 17 168 396 732 DISTALL ALL (P) 0.00 0.14 0.41 2.32 22.95 732 DISTALL ALL (RMS) 0.00 1.65 1.98 4.02 7.75 DISTALL END of the results output