####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 22 ( 151), selected 22 , name T0582TS316_1_2-D2 # Molecule2: number of CA atoms 99 ( 732), selected 22 , name T0582-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0582TS316_1_2-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 127 - 143 4.87 8.53 LONGEST_CONTINUOUS_SEGMENT: 17 128 - 144 4.79 7.98 LCS_AVERAGE: 16.57 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 129 - 140 1.88 11.43 LCS_AVERAGE: 9.46 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 132 - 138 0.97 12.10 LONGEST_CONTINUOUS_SEGMENT: 7 133 - 139 0.72 11.57 LCS_AVERAGE: 5.42 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 22 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 123 M 123 5 6 13 3 5 5 6 6 7 7 8 9 9 10 11 12 12 12 13 13 13 14 20 LCS_GDT E 124 E 124 5 6 13 3 5 5 6 6 7 7 8 9 12 13 16 16 17 20 21 21 21 21 21 LCS_GDT A 125 A 125 5 6 13 3 5 5 6 6 7 7 8 11 12 13 15 16 17 20 21 21 21 21 21 LCS_GDT E 126 E 126 5 6 16 3 5 5 6 6 7 7 8 9 10 10 12 13 15 18 21 21 21 21 21 LCS_GDT L 127 L 127 5 6 17 3 3 5 5 5 7 7 9 11 12 13 16 16 17 20 21 21 21 21 21 LCS_GDT G 128 G 128 4 6 17 3 3 4 6 8 10 11 12 13 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT A 129 A 129 4 12 17 3 3 4 8 10 12 13 13 13 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT P 130 P 130 4 12 17 3 4 4 6 10 12 13 13 13 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT V 131 V 131 4 12 17 3 4 4 6 10 12 13 13 13 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT E 132 E 132 7 12 17 3 5 7 8 10 12 13 13 13 13 14 14 15 16 20 21 21 21 21 21 LCS_GDT G 133 G 133 7 12 17 4 6 7 8 10 12 13 13 13 13 14 15 16 17 20 21 21 21 21 21 LCS_GDT I 134 I 134 7 12 17 4 6 7 8 10 12 13 13 13 13 14 14 16 16 20 21 21 21 21 21 LCS_GDT S 135 S 135 7 12 17 4 6 7 8 10 12 13 13 13 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT T 136 T 136 7 12 17 4 6 7 8 10 12 13 13 13 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT S 137 S 137 7 12 17 3 6 7 8 10 12 13 13 13 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT L 138 L 138 7 12 17 4 6 7 8 10 12 13 13 13 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT L 139 L 139 7 12 17 4 6 7 8 10 12 13 13 13 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT H 140 H 140 6 12 17 3 5 7 8 10 12 13 13 13 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT E 141 E 141 4 11 17 3 4 7 7 9 12 13 13 13 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT D 142 D 142 4 5 17 3 4 4 4 5 5 5 9 12 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT E 143 E 143 4 5 17 3 4 4 4 5 5 5 8 12 13 14 16 16 17 20 21 21 21 21 21 LCS_GDT R 144 R 144 3 5 17 0 3 3 3 5 7 8 9 12 12 13 16 16 17 20 21 21 21 21 21 LCS_AVERAGE LCS_A: 10.48 ( 5.42 9.46 16.57 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 6 7 8 10 12 13 13 13 13 14 16 16 17 20 21 21 21 21 21 GDT PERCENT_AT 4.04 6.06 7.07 8.08 10.10 12.12 13.13 13.13 13.13 13.13 14.14 16.16 16.16 17.17 20.20 21.21 21.21 21.21 21.21 21.21 GDT RMS_LOCAL 0.11 0.51 0.72 1.05 1.45 1.88 2.19 2.19 2.19 2.19 2.60 4.67 4.67 4.95 5.53 5.73 5.73 5.73 5.73 5.73 GDT RMS_ALL_AT 12.13 11.70 11.57 11.63 11.55 11.43 11.05 11.05 11.05 11.05 11.06 6.67 6.67 6.51 6.26 6.19 6.19 6.19 6.19 6.19 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 123 M 123 21.462 3 0.312 0.300 23.240 0.000 0.000 LGA E 124 E 124 19.244 4 0.048 0.046 20.404 0.000 0.000 LGA A 125 A 125 22.967 0 0.154 0.157 25.597 0.000 0.000 LGA E 126 E 126 17.244 4 0.635 0.625 19.194 0.000 0.000 LGA L 127 L 127 11.149 3 0.171 0.228 13.604 0.119 0.060 LGA G 128 G 128 6.055 0 0.183 0.183 7.168 22.500 22.500 LGA A 129 A 129 3.021 0 0.150 0.219 4.436 50.476 50.381 LGA P 130 P 130 2.516 2 0.657 0.592 3.660 59.286 40.068 LGA V 131 V 131 2.806 2 0.626 0.564 3.748 55.595 37.959 LGA E 132 E 132 1.685 4 0.398 0.377 3.433 79.286 40.794 LGA G 133 G 133 1.322 0 0.056 0.056 1.742 79.286 79.286 LGA I 134 I 134 1.483 3 0.069 0.072 2.454 81.548 48.869 LGA S 135 S 135 0.514 1 0.090 0.097 1.291 88.214 72.381 LGA T 136 T 136 1.198 2 0.084 0.116 2.995 73.214 50.000 LGA S 137 S 137 2.992 1 0.135 0.181 4.261 71.310 53.730 LGA L 138 L 138 2.718 3 0.142 0.171 3.953 65.000 37.917 LGA L 139 L 139 0.660 3 0.041 0.039 1.379 88.214 54.286 LGA H 140 H 140 1.071 5 0.644 0.581 4.258 68.452 35.524 LGA E 141 E 141 3.551 4 0.536 0.525 5.820 37.738 23.968 LGA D 142 D 142 10.273 3 0.147 0.217 11.874 1.786 0.893 LGA E 143 E 143 15.771 4 0.655 0.631 19.510 0.000 0.000 LGA R 144 R 144 21.240 6 0.192 0.184 22.838 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 22 88 88 100.00 165 108 65.45 99 SUMMARY(RMSD_GDC): 6.144 5.938 6.333 9.313 6.552 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 22 99 4.0 13 2.19 12.121 11.442 0.568 LGA_LOCAL RMSD: 2.190 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.046 Number of assigned atoms: 22 Std_ASGN_ATOMS RMSD: 6.144 Standard rmsd on all 22 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.749377 * X + -0.643168 * Y + 0.157382 * Z + 25.504480 Y_new = 0.584967 * X + 0.754425 * Y + 0.297753 * Z + -34.209984 Z_new = -0.310238 * X + -0.131066 * Y + 0.941581 * Z + 17.456049 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.662802 0.315443 -0.138309 [DEG: 37.9757 18.0736 -7.9245 ] ZXZ: 2.655355 0.343503 -1.970522 [DEG: 152.1407 19.6813 -112.9026 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0582TS316_1_2-D2 REMARK 2: T0582-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0582TS316_1_2-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 22 99 4.0 13 2.19 11.442 6.14 REMARK ---------------------------------------------------------- MOLECULE T0582TS316_1_2-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 2 REMARK PFRMAT TS REMARK TARGET T0582 REMARK PARENT N/A ATOM 731 N MET 123 39.913 -13.553 34.722 1.00 0.00 N ATOM 732 CA MET 123 39.823 -12.783 35.957 1.00 0.00 C ATOM 733 C MET 123 39.907 -11.288 35.681 1.00 0.00 C ATOM 734 O MET 123 40.388 -10.520 36.514 1.00 0.00 O ATOM 735 CB MET 123 40.926 -13.206 36.925 1.00 0.00 C ATOM 736 CEN MET 123 41.206 -14.054 38.435 1.00 0.00 C ATOM 737 H MET 123 40.742 -13.471 34.151 1.00 0.00 H ATOM 738 N GLU 124 39.438 -10.880 34.507 1.00 0.00 N ATOM 739 CA GLU 124 39.516 -9.484 34.094 1.00 0.00 C ATOM 740 C GLU 124 38.694 -8.591 35.015 1.00 0.00 C ATOM 741 O GLU 124 38.867 -7.372 35.029 1.00 0.00 O ATOM 742 CB GLU 124 39.041 -9.326 32.648 1.00 0.00 C ATOM 743 CEN GLU 124 39.390 -9.165 30.988 1.00 0.00 C ATOM 744 H GLU 124 39.017 -11.554 33.884 1.00 0.00 H ATOM 745 N ALA 125 37.802 -9.204 35.785 1.00 0.00 N ATOM 746 CA ALA 125 36.952 -8.465 36.711 1.00 0.00 C ATOM 747 C ALA 125 37.698 -8.131 37.996 1.00 0.00 C ATOM 748 O ALA 125 37.198 -7.389 38.841 1.00 0.00 O ATOM 749 CB ALA 125 35.690 -9.258 37.018 1.00 0.00 C ATOM 750 CEN ALA 125 35.691 -9.257 37.019 1.00 0.00 C ATOM 751 H ALA 125 37.709 -10.209 35.726 1.00 0.00 H ATOM 752 N GLU 126 38.900 -8.682 38.137 1.00 0.00 N ATOM 753 CA GLU 126 39.711 -8.456 39.327 1.00 0.00 C ATOM 754 C GLU 126 40.880 -7.527 39.027 1.00 0.00 C ATOM 755 O GLU 126 41.270 -7.356 37.873 1.00 0.00 O ATOM 756 CB GLU 126 40.225 -9.784 39.886 1.00 0.00 C ATOM 757 CEN GLU 126 40.097 -11.064 41.003 1.00 0.00 C ATOM 758 H GLU 126 39.259 -9.274 37.402 1.00 0.00 H ATOM 759 N LEU 127 41.436 -6.928 40.075 1.00 0.00 N ATOM 760 CA LEU 127 42.575 -6.029 39.928 1.00 0.00 C ATOM 761 C LEU 127 43.852 -6.803 39.627 1.00 0.00 C ATOM 762 O LEU 127 43.892 -8.027 39.754 1.00 0.00 O ATOM 763 CB LEU 127 42.749 -5.183 41.195 1.00 0.00 C ATOM 764 CEN LEU 127 42.427 -3.713 41.524 1.00 0.00 C ATOM 765 H LEU 127 41.061 -7.098 40.996 1.00 0.00 H ATOM 766 N GLY 128 44.894 -6.082 39.227 1.00 0.00 N ATOM 767 CA GLY 128 46.173 -6.701 38.898 1.00 0.00 C ATOM 768 C GLY 128 46.796 -7.362 40.121 1.00 0.00 C ATOM 769 O GLY 128 46.807 -6.788 41.210 1.00 0.00 O ATOM 770 CEN GLY 128 46.173 -6.702 38.898 1.00 0.00 C ATOM 771 H GLY 128 44.799 -5.079 39.150 1.00 0.00 H ATOM 772 N ALA 129 47.315 -8.571 39.934 1.00 0.00 N ATOM 773 CA ALA 129 47.932 -9.316 41.025 1.00 0.00 C ATOM 774 C ALA 129 48.057 -10.795 40.679 1.00 0.00 C ATOM 775 O ALA 129 47.685 -11.220 39.586 1.00 0.00 O ATOM 776 CB ALA 129 47.136 -9.134 42.309 1.00 0.00 C ATOM 777 CEN ALA 129 47.137 -9.135 42.308 1.00 0.00 C ATOM 778 H ALA 129 47.281 -8.983 39.013 1.00 0.00 H ATOM 779 N PRO 130 48.583 -11.574 41.618 1.00 0.00 N ATOM 780 CA PRO 130 48.750 -13.008 41.419 1.00 0.00 C ATOM 781 C PRO 130 47.402 -13.704 41.276 1.00 0.00 C ATOM 782 O PRO 130 47.325 -14.836 40.797 1.00 0.00 O ATOM 783 CB PRO 130 49.513 -13.476 42.670 1.00 0.00 C ATOM 784 CEN PRO 130 49.370 -11.766 43.162 1.00 0.00 C ATOM 785 N VAL 131 46.342 -13.022 41.695 1.00 0.00 N ATOM 786 CA VAL 131 44.992 -13.561 41.584 1.00 0.00 C ATOM 787 C VAL 131 44.541 -13.625 40.132 1.00 0.00 C ATOM 788 O VAL 131 43.684 -14.433 39.772 1.00 0.00 O ATOM 789 CB VAL 131 43.981 -12.722 42.388 1.00 0.00 C ATOM 790 CEN VAL 131 43.582 -12.723 42.950 1.00 0.00 C ATOM 791 H VAL 131 46.475 -12.106 42.100 1.00 0.00 H ATOM 792 N GLU 132 45.124 -12.770 39.297 1.00 0.00 N ATOM 793 CA GLU 132 44.798 -12.742 37.876 1.00 0.00 C ATOM 794 C GLU 132 45.850 -13.475 37.056 1.00 0.00 C ATOM 795 O GLU 132 45.533 -14.124 36.059 1.00 0.00 O ATOM 796 CB GLU 132 44.660 -11.299 37.387 1.00 0.00 C ATOM 797 CEN GLU 132 43.681 -9.965 36.979 1.00 0.00 C ATOM 798 H GLU 132 45.810 -12.122 39.658 1.00 0.00 H ATOM 799 N GLY 133 47.105 -13.367 37.480 1.00 0.00 N ATOM 800 CA GLY 133 48.228 -13.826 36.672 1.00 0.00 C ATOM 801 C GLY 133 48.799 -12.694 35.828 1.00 0.00 C ATOM 802 O GLY 133 49.833 -12.850 35.179 1.00 0.00 O ATOM 803 CEN GLY 133 48.229 -13.827 36.672 1.00 0.00 C ATOM 804 H GLY 133 47.284 -12.958 38.385 1.00 0.00 H ATOM 805 N ILE 134 48.116 -11.553 35.839 1.00 0.00 N ATOM 806 CA ILE 134 48.532 -10.406 35.042 1.00 0.00 C ATOM 807 C ILE 134 48.396 -9.109 35.831 1.00 0.00 C ATOM 808 O ILE 134 47.287 -8.630 36.069 1.00 0.00 O ATOM 809 CB ILE 134 47.713 -10.293 33.743 1.00 0.00 C ATOM 810 CEN ILE 134 47.633 -10.623 32.707 1.00 0.00 C ATOM 811 H ILE 134 47.290 -11.481 36.414 1.00 0.00 H ATOM 812 N SER 135 49.530 -8.546 36.233 1.00 0.00 N ATOM 813 CA SER 135 49.537 -7.393 37.126 1.00 0.00 C ATOM 814 C SER 135 49.782 -6.102 36.355 1.00 0.00 C ATOM 815 O SER 135 50.779 -5.970 35.646 1.00 0.00 O ATOM 816 CB SER 135 50.590 -7.572 38.203 1.00 0.00 C ATOM 817 CEN SER 135 51.057 -7.724 38.436 1.00 0.00 C ATOM 818 H SER 135 50.408 -8.927 35.914 1.00 0.00 H ATOM 819 N THR 136 48.866 -5.150 36.499 1.00 0.00 N ATOM 820 CA THR 136 48.964 -3.879 35.792 1.00 0.00 C ATOM 821 C THR 136 48.282 -2.761 36.571 1.00 0.00 C ATOM 822 O THR 136 47.357 -3.007 37.345 1.00 0.00 O ATOM 823 CB THR 136 48.343 -3.964 34.386 1.00 0.00 C ATOM 824 CEN THR 136 48.314 -4.195 33.850 1.00 0.00 C ATOM 825 H THR 136 48.081 -5.312 37.114 1.00 0.00 H ATOM 826 N SER 137 48.744 -1.533 36.361 1.00 0.00 N ATOM 827 CA SER 137 48.086 -0.361 36.925 1.00 0.00 C ATOM 828 C SER 137 48.428 0.895 36.134 1.00 0.00 C ATOM 829 O SER 137 49.454 0.954 35.456 1.00 0.00 O ATOM 830 CB SER 137 48.479 -0.191 38.379 1.00 0.00 C ATOM 831 CEN SER 137 48.788 -0.201 38.827 1.00 0.00 C ATOM 832 H SER 137 49.572 -1.409 35.797 1.00 0.00 H ATOM 833 N LEU 138 47.562 1.899 36.225 1.00 0.00 N ATOM 834 CA LEU 138 47.758 3.149 35.499 1.00 0.00 C ATOM 835 C LEU 138 48.997 3.884 35.994 1.00 0.00 C ATOM 836 O LEU 138 49.253 3.948 37.197 1.00 0.00 O ATOM 837 CB LEU 138 46.517 4.040 35.634 1.00 0.00 C ATOM 838 CEN LEU 138 45.367 4.385 34.669 1.00 0.00 C ATOM 839 H LEU 138 46.746 1.793 36.811 1.00 0.00 H ATOM 840 N LEU 139 49.762 4.439 35.061 1.00 0.00 N ATOM 841 CA LEU 139 50.976 5.171 35.402 1.00 0.00 C ATOM 842 C LEU 139 50.654 6.578 35.889 1.00 0.00 C ATOM 843 O LEU 139 51.381 7.143 36.705 1.00 0.00 O ATOM 844 CB LEU 139 51.918 5.227 34.191 1.00 0.00 C ATOM 845 CEN LEU 139 53.215 4.473 33.840 1.00 0.00 C ATOM 846 H LEU 139 49.495 4.352 34.091 1.00 0.00 H ATOM 847 N HIS 140 49.560 7.137 35.383 1.00 0.00 N ATOM 848 CA HIS 140 49.202 8.520 35.676 1.00 0.00 C ATOM 849 C HIS 140 48.644 8.657 37.087 1.00 0.00 C ATOM 850 O HIS 140 48.410 9.765 37.567 1.00 0.00 O ATOM 851 CB HIS 140 48.183 9.042 34.658 1.00 0.00 C ATOM 852 CEN HIS 140 48.180 9.786 33.442 1.00 0.00 C ATOM 853 H HIS 140 48.963 6.591 34.780 1.00 0.00 H ATOM 854 N GLU 141 48.433 7.523 37.747 1.00 0.00 N ATOM 855 CA GLU 141 47.862 7.512 39.088 1.00 0.00 C ATOM 856 C GLU 141 48.783 6.805 40.073 1.00 0.00 C ATOM 857 O GLU 141 48.339 6.318 41.114 1.00 0.00 O ATOM 858 CB GLU 141 46.487 6.842 39.080 1.00 0.00 C ATOM 859 CEN GLU 141 44.787 6.959 39.055 1.00 0.00 C ATOM 860 H GLU 141 48.675 6.646 37.308 1.00 0.00 H ATOM 861 N ASP 142 50.069 6.751 39.741 1.00 0.00 N ATOM 862 CA ASP 142 51.051 6.080 40.584 1.00 0.00 C ATOM 863 C ASP 142 51.356 6.899 41.831 1.00 0.00 C ATOM 864 O ASP 142 51.240 8.125 41.825 1.00 0.00 O ATOM 865 CB ASP 142 52.339 5.816 39.800 1.00 0.00 C ATOM 866 CEN ASP 142 52.804 5.072 39.283 1.00 0.00 C ATOM 867 H ASP 142 50.372 7.185 38.881 1.00 0.00 H ATOM 868 N GLU 143 51.746 6.215 42.902 1.00 0.00 N ATOM 869 CA GLU 143 52.175 6.883 44.124 1.00 0.00 C ATOM 870 C GLU 143 53.601 6.496 44.493 1.00 0.00 C ATOM 871 O GLU 143 54.278 5.794 43.741 1.00 0.00 O ATOM 872 CB GLU 143 51.225 6.551 45.278 1.00 0.00 C ATOM 873 CEN GLU 143 49.909 6.973 46.275 1.00 0.00 C ATOM 874 H GLU 143 51.746 5.205 42.867 1.00 0.00 H ATOM 875 N ARG 144 54.053 6.957 45.654 1.00 0.00 N ATOM 876 CA ARG 144 55.417 6.703 46.101 1.00 0.00 C ATOM 877 C ARG 144 55.628 5.228 46.417 1.00 0.00 C ATOM 878 O ARG 144 56.318 4.704 45.919 1.00 0.00 O ATOM 879 CB ARG 144 55.810 7.587 47.275 1.00 0.00 C ATOM 880 CEN ARG 144 56.767 9.477 48.566 1.00 0.00 C ATOM 881 H ARG 144 53.435 7.497 46.243 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 108 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 70.33 47.6 42 21.4 196 ARMSMC SECONDARY STRUCTURE . . 54.95 62.5 16 14.8 108 ARMSMC SURFACE . . . . . . . . 75.20 44.4 36 28.1 128 ARMSMC BURIED . . . . . . . . 26.36 66.7 6 8.8 68 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 76 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 68 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 47 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 51 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 37 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 40 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 22 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 9 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.14 (Number of atoms: 22) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.14 22 22.2 99 CRMSCA CRN = ALL/NP . . . . . 0.2793 CRMSCA SECONDARY STRUCTURE . . 5.50 8 14.8 54 CRMSCA SURFACE . . . . . . . . 6.21 19 29.2 65 CRMSCA BURIED . . . . . . . . 5.70 3 8.8 34 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.34 108 22.3 484 CRMSMC SECONDARY STRUCTURE . . 5.76 40 15.0 267 CRMSMC SURFACE . . . . . . . . 6.36 93 29.2 318 CRMSMC BURIED . . . . . . . . 6.18 15 9.0 166 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.82 20 6.0 336 CRMSSC RELIABLE SIDE CHAINS . 7.82 20 7.2 278 CRMSSC SECONDARY STRUCTURE . . 7.07 8 4.0 198 CRMSSC SURFACE . . . . . . . . 7.90 17 7.2 236 CRMSSC BURIED . . . . . . . . 7.38 3 3.0 100 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.34 108 14.8 732 CRMSALL SECONDARY STRUCTURE . . 5.76 40 9.7 414 CRMSALL SURFACE . . . . . . . . 6.36 93 18.8 496 CRMSALL BURIED . . . . . . . . 6.18 15 6.4 236 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.827 1.000 0.500 22 22.2 99 ERRCA SECONDARY STRUCTURE . . 5.273 1.000 0.500 8 14.8 54 ERRCA SURFACE . . . . . . . . 5.868 1.000 0.500 19 29.2 65 ERRCA BURIED . . . . . . . . 5.566 1.000 0.500 3 8.8 34 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.971 1.000 0.500 108 22.3 484 ERRMC SECONDARY STRUCTURE . . 5.488 1.000 0.500 40 15.0 267 ERRMC SURFACE . . . . . . . . 5.959 1.000 0.500 93 29.2 318 ERRMC BURIED . . . . . . . . 6.051 1.000 0.500 15 9.0 166 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.483 1.000 0.500 20 6.0 336 ERRSC RELIABLE SIDE CHAINS . 7.483 1.000 0.500 20 7.2 278 ERRSC SECONDARY STRUCTURE . . 6.795 1.000 0.500 8 4.0 198 ERRSC SURFACE . . . . . . . . 7.524 1.000 0.500 17 7.2 236 ERRSC BURIED . . . . . . . . 7.248 1.000 0.500 3 3.0 100 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.971 1.000 0.500 108 14.8 732 ERRALL SECONDARY STRUCTURE . . 5.488 1.000 0.500 40 9.7 414 ERRALL SURFACE . . . . . . . . 5.959 1.000 0.500 93 18.8 496 ERRALL BURIED . . . . . . . . 6.051 1.000 0.500 15 6.4 236 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 9 21 22 99 DISTCA CA (P) 0.00 0.00 1.01 9.09 21.21 99 DISTCA CA (RMS) 0.00 0.00 2.77 4.24 5.78 DISTCA ALL (N) 0 2 7 37 101 108 732 DISTALL ALL (P) 0.00 0.27 0.96 5.05 13.80 732 DISTALL ALL (RMS) 0.00 1.60 2.29 4.07 5.85 DISTALL END of the results output