####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 22 ( 151), selected 22 , name T0582TS042_1_2-D2 # Molecule2: number of CA atoms 99 ( 732), selected 22 , name T0582-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0582TS042_1_2-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 124 - 144 4.96 5.14 LCS_AVERAGE: 21.07 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 131 - 140 1.22 12.71 LCS_AVERAGE: 8.13 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 132 - 139 0.75 13.37 LCS_AVERAGE: 5.92 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 22 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 123 M 123 3 6 18 3 3 3 4 5 8 10 12 14 15 17 19 19 20 21 22 22 22 22 22 LCS_GDT E 124 E 124 5 7 21 4 5 5 6 7 9 10 12 14 16 17 19 19 20 21 22 22 22 22 22 LCS_GDT A 125 A 125 5 7 21 4 5 5 6 7 9 10 12 14 16 16 19 19 20 21 22 22 22 22 22 LCS_GDT E 126 E 126 5 7 21 4 5 5 6 6 8 10 12 12 12 12 14 16 18 21 22 22 22 22 22 LCS_GDT L 127 L 127 5 7 21 4 5 5 6 6 8 10 12 12 12 13 17 19 20 21 22 22 22 22 22 LCS_GDT G 128 G 128 5 7 21 3 5 5 6 6 8 10 12 12 12 12 14 16 18 21 22 22 22 22 22 LCS_GDT A 129 A 129 5 7 21 4 5 5 6 7 9 10 12 14 16 16 19 19 20 21 22 22 22 22 22 LCS_GDT P 130 P 130 5 7 21 4 5 5 6 7 9 10 12 14 16 17 19 19 20 21 22 22 22 22 22 LCS_GDT V 131 V 131 6 10 21 4 6 8 10 10 10 10 12 14 16 17 19 19 20 21 22 22 22 22 22 LCS_GDT E 132 E 132 8 10 21 4 7 8 10 10 10 10 12 14 16 17 19 19 20 21 22 22 22 22 22 LCS_GDT G 133 G 133 8 10 21 3 7 8 10 10 10 10 12 14 16 17 19 19 20 21 22 22 22 22 22 LCS_GDT I 134 I 134 8 10 21 3 7 8 10 10 10 10 12 14 16 17 19 19 20 21 22 22 22 22 22 LCS_GDT S 135 S 135 8 10 21 3 7 8 10 10 10 10 11 14 15 17 19 19 20 21 22 22 22 22 22 LCS_GDT T 136 T 136 8 10 21 3 7 8 10 10 10 10 11 14 16 17 19 19 20 21 22 22 22 22 22 LCS_GDT S 137 S 137 8 10 21 3 7 8 10 10 10 10 11 14 16 17 19 19 20 21 22 22 22 22 22 LCS_GDT L 138 L 138 8 10 21 3 7 8 10 10 10 10 11 14 16 17 19 19 20 21 22 22 22 22 22 LCS_GDT L 139 L 139 8 10 21 3 7 8 10 10 10 10 11 14 15 17 19 19 20 21 22 22 22 22 22 LCS_GDT H 140 H 140 6 10 21 3 4 7 10 10 10 10 11 14 16 17 19 19 20 21 22 22 22 22 22 LCS_GDT E 141 E 141 4 7 21 3 4 4 5 7 9 10 11 14 16 17 19 19 20 21 22 22 22 22 22 LCS_GDT D 142 D 142 4 5 21 3 4 4 4 7 9 10 11 14 16 17 19 19 20 21 22 22 22 22 22 LCS_GDT E 143 E 143 4 5 21 3 4 4 4 7 9 10 11 14 16 17 19 19 20 20 22 22 22 22 22 LCS_GDT R 144 R 144 3 5 21 1 3 4 6 7 9 10 11 14 16 17 19 19 20 21 22 22 22 22 22 LCS_AVERAGE LCS_A: 11.71 ( 5.92 8.13 21.07 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 8 10 10 10 10 12 14 16 17 19 19 20 21 22 22 22 22 22 GDT PERCENT_AT 4.04 7.07 8.08 10.10 10.10 10.10 10.10 12.12 14.14 16.16 17.17 19.19 19.19 20.20 21.21 22.22 22.22 22.22 22.22 22.22 GDT RMS_LOCAL 0.36 0.60 0.75 1.22 1.22 1.22 1.22 3.05 3.45 3.91 3.99 4.36 4.36 4.54 5.06 5.10 5.10 5.10 5.10 5.10 GDT RMS_ALL_AT 21.84 13.56 13.37 12.71 12.71 12.71 12.71 15.23 6.81 5.18 5.99 5.33 5.33 5.23 5.14 5.10 5.10 5.10 5.10 5.10 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 123 M 123 2.298 3 0.023 0.028 4.935 64.881 39.583 LGA E 124 E 124 2.885 4 0.619 0.556 5.894 67.143 32.222 LGA A 125 A 125 2.139 0 0.087 0.089 3.535 69.286 64.095 LGA E 126 E 126 3.123 4 0.098 0.106 4.174 50.476 26.561 LGA L 127 L 127 2.762 3 0.110 0.143 3.222 71.310 41.905 LGA G 128 G 128 1.998 0 0.672 0.672 3.305 63.214 63.214 LGA A 129 A 129 3.811 0 0.045 0.048 6.272 57.500 49.429 LGA P 130 P 130 1.808 2 0.047 0.061 3.997 59.524 40.204 LGA V 131 V 131 4.219 2 0.477 0.449 6.442 46.905 29.252 LGA E 132 E 132 2.770 4 0.425 0.436 4.586 63.333 31.640 LGA G 133 G 133 3.513 0 0.053 0.053 5.745 43.690 43.690 LGA I 134 I 134 4.076 3 0.170 0.245 6.236 31.429 22.857 LGA S 135 S 135 8.130 1 0.054 0.077 9.779 7.500 5.079 LGA T 136 T 136 9.426 2 0.084 0.116 12.363 0.714 0.816 LGA S 137 S 137 12.934 1 0.135 0.181 13.911 0.000 0.000 LGA L 138 L 138 15.289 3 0.142 0.171 18.411 0.000 0.000 LGA L 139 L 139 16.174 3 0.041 0.038 19.718 0.000 0.000 LGA H 140 H 140 19.293 5 0.644 0.581 21.554 0.000 0.000 LGA E 141 E 141 24.710 4 0.536 0.525 28.285 0.000 0.000 LGA D 142 D 142 28.905 3 0.147 0.217 30.697 0.000 0.000 LGA E 143 E 143 34.622 4 0.656 0.631 37.108 0.000 0.000 LGA R 144 R 144 33.991 6 0.192 0.185 35.401 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 22 88 88 100.00 165 108 65.45 99 SUMMARY(RMSD_GDC): 5.100 5.029 5.272 7.039 4.955 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 22 99 4.0 12 3.05 12.879 11.703 0.381 LGA_LOCAL RMSD: 3.052 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.228 Number of assigned atoms: 22 Std_ASGN_ATOMS RMSD: 5.100 Standard rmsd on all 22 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.242873 * X + -0.692875 * Y + 0.678924 * Z + 89.949852 Y_new = 0.429964 * X + 0.550486 * Y + 0.715609 * Z + -10.979337 Z_new = -0.869565 * X + 0.465715 * Y + 0.164213 * Z + 55.480145 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.084983 1.054322 1.231803 [DEG: 119.4607 60.4082 70.5771 ] ZXZ: 2.382495 1.405836 -1.079098 [DEG: 136.5069 80.5485 -61.8278 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0582TS042_1_2-D2 REMARK 2: T0582-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0582TS042_1_2-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 22 99 4.0 12 3.05 11.703 5.10 REMARK ---------------------------------------------------------- MOLECULE T0582TS042_1_2-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 2 REMARK PFRMAT TS REMARK TARGET T0582 REMARK PARENT N/A ATOM 731 N MET 123 54.247 -2.070 33.398 1.00 0.00 N ATOM 732 CA MET 123 54.708 -0.686 33.429 1.00 0.00 C ATOM 733 C MET 123 55.515 -0.403 34.689 1.00 0.00 C ATOM 734 O MET 123 56.443 0.406 34.674 1.00 0.00 O ATOM 735 CB MET 123 53.518 0.268 33.338 1.00 0.00 C ATOM 736 CEN MET 123 52.729 1.413 32.270 1.00 0.00 C ATOM 737 H MET 123 53.259 -2.261 33.469 1.00 0.00 H ATOM 738 N GLU 124 55.157 -1.075 35.778 1.00 0.00 N ATOM 739 CA GLU 124 55.845 -0.891 37.051 1.00 0.00 C ATOM 740 C GLU 124 56.422 -2.207 37.560 1.00 0.00 C ATOM 741 O GLU 124 55.682 -3.124 37.914 1.00 0.00 O ATOM 742 CB GLU 124 54.894 -0.297 38.093 1.00 0.00 C ATOM 743 CEN GLU 124 54.303 1.049 38.955 1.00 0.00 C ATOM 744 H GLU 124 54.389 -1.728 35.724 1.00 0.00 H ATOM 745 N ALA 125 57.748 -2.291 37.592 1.00 0.00 N ATOM 746 CA ALA 125 58.427 -3.469 38.119 1.00 0.00 C ATOM 747 C ALA 125 58.333 -3.526 39.639 1.00 0.00 C ATOM 748 O ALA 125 58.489 -4.589 40.240 1.00 0.00 O ATOM 749 CB ALA 125 59.882 -3.484 37.674 1.00 0.00 C ATOM 750 CEN ALA 125 59.882 -3.484 37.675 1.00 0.00 C ATOM 751 H ALA 125 58.299 -1.520 37.244 1.00 0.00 H ATOM 752 N GLU 126 58.076 -2.377 40.254 1.00 0.00 N ATOM 753 CA GLU 126 57.900 -2.304 41.699 1.00 0.00 C ATOM 754 C GLU 126 56.428 -2.413 42.080 1.00 0.00 C ATOM 755 O GLU 126 56.071 -2.304 43.253 1.00 0.00 O ATOM 756 CB GLU 126 58.490 -1.003 42.247 1.00 0.00 C ATOM 757 CEN GLU 126 59.762 -0.165 43.009 1.00 0.00 C ATOM 758 H GLU 126 58.003 -1.531 39.706 1.00 0.00 H ATOM 759 N LEU 127 55.578 -2.628 41.081 1.00 0.00 N ATOM 760 CA LEU 127 54.145 -2.768 41.312 1.00 0.00 C ATOM 761 C LEU 127 53.831 -4.062 42.051 1.00 0.00 C ATOM 762 O LEU 127 54.554 -5.050 41.927 1.00 0.00 O ATOM 763 CB LEU 127 53.387 -2.717 39.980 1.00 0.00 C ATOM 764 CEN LEU 127 52.539 -1.625 39.300 1.00 0.00 C ATOM 765 H LEU 127 55.934 -2.696 40.138 1.00 0.00 H ATOM 766 N GLY 128 52.748 -4.048 42.821 1.00 0.00 N ATOM 767 CA GLY 128 52.304 -5.237 43.541 1.00 0.00 C ATOM 768 C GLY 128 51.031 -5.807 42.929 1.00 0.00 C ATOM 769 O GLY 128 50.362 -6.645 43.534 1.00 0.00 O ATOM 770 CEN GLY 128 52.304 -5.237 43.541 1.00 0.00 C ATOM 771 H GLY 128 52.218 -3.193 42.911 1.00 0.00 H ATOM 772 N ALA 129 50.701 -5.349 41.727 1.00 0.00 N ATOM 773 CA ALA 129 49.481 -5.776 41.052 1.00 0.00 C ATOM 774 C ALA 129 49.554 -7.247 40.662 1.00 0.00 C ATOM 775 O ALA 129 50.539 -7.695 40.076 1.00 0.00 O ATOM 776 CB ALA 129 49.222 -4.911 39.827 1.00 0.00 C ATOM 777 CEN ALA 129 49.222 -4.912 39.828 1.00 0.00 C ATOM 778 H ALA 129 51.310 -4.687 41.269 1.00 0.00 H ATOM 779 N PRO 130 48.505 -7.993 40.990 1.00 0.00 N ATOM 780 CA PRO 130 48.415 -9.398 40.611 1.00 0.00 C ATOM 781 C PRO 130 47.852 -9.554 39.205 1.00 0.00 C ATOM 782 O PRO 130 46.847 -8.934 38.856 1.00 0.00 O ATOM 783 CB PRO 130 47.495 -10.017 41.676 1.00 0.00 C ATOM 784 CEN PRO 130 47.397 -8.344 42.289 1.00 0.00 C ATOM 785 N VAL 131 48.504 -10.385 38.399 1.00 0.00 N ATOM 786 CA VAL 131 48.000 -10.720 37.073 1.00 0.00 C ATOM 787 C VAL 131 47.504 -12.160 37.021 1.00 0.00 C ATOM 788 O VAL 131 47.392 -12.749 35.945 1.00 0.00 O ATOM 789 CB VAL 131 49.078 -10.519 35.992 1.00 0.00 C ATOM 790 CEN VAL 131 49.263 -10.123 35.460 1.00 0.00 C ATOM 791 H VAL 131 49.372 -10.794 38.714 1.00 0.00 H ATOM 792 N GLU 132 47.207 -12.721 38.188 1.00 0.00 N ATOM 793 CA GLU 132 46.652 -14.066 38.272 1.00 0.00 C ATOM 794 C GLU 132 45.371 -14.186 37.457 1.00 0.00 C ATOM 795 O GLU 132 44.507 -13.311 37.508 1.00 0.00 O ATOM 796 CB GLU 132 46.384 -14.445 39.731 1.00 0.00 C ATOM 797 CEN GLU 132 46.856 -15.246 41.158 1.00 0.00 C ATOM 798 H GLU 132 47.370 -12.201 39.039 1.00 0.00 H ATOM 799 N GLY 133 45.254 -15.274 36.704 1.00 0.00 N ATOM 800 CA GLY 133 44.058 -15.534 35.911 1.00 0.00 C ATOM 801 C GLY 133 44.027 -14.666 34.660 1.00 0.00 C ATOM 802 O GLY 133 43.037 -14.650 33.929 1.00 0.00 O ATOM 803 CEN GLY 133 44.058 -15.534 35.911 1.00 0.00 C ATOM 804 H GLY 133 46.014 -15.939 36.679 1.00 0.00 H ATOM 805 N ILE 134 45.117 -13.945 34.418 1.00 0.00 N ATOM 806 CA ILE 134 45.241 -13.122 33.222 1.00 0.00 C ATOM 807 C ILE 134 46.632 -13.241 32.614 1.00 0.00 C ATOM 808 O ILE 134 47.563 -13.726 33.257 1.00 0.00 O ATOM 809 CB ILE 134 44.949 -11.640 33.524 1.00 0.00 C ATOM 810 CEN ILE 134 44.168 -10.886 33.616 1.00 0.00 C ATOM 811 H ILE 134 45.880 -13.970 35.081 1.00 0.00 H ATOM 812 N SER 135 46.768 -12.798 31.368 1.00 0.00 N ATOM 813 CA SER 135 48.074 -12.693 30.730 1.00 0.00 C ATOM 814 C SER 135 48.238 -11.352 30.027 1.00 0.00 C ATOM 815 O SER 135 47.258 -10.736 29.608 1.00 0.00 O ATOM 816 CB SER 135 48.268 -13.831 29.747 1.00 0.00 C ATOM 817 CEN SER 135 48.144 -14.207 29.374 1.00 0.00 C ATOM 818 H SER 135 45.944 -12.526 30.850 1.00 0.00 H ATOM 819 N THR 136 49.482 -10.903 29.900 1.00 0.00 N ATOM 820 CA THR 136 49.773 -9.610 29.292 1.00 0.00 C ATOM 821 C THR 136 51.151 -9.604 28.644 1.00 0.00 C ATOM 822 O THR 136 52.044 -10.346 29.053 1.00 0.00 O ATOM 823 CB THR 136 49.697 -8.470 30.324 1.00 0.00 C ATOM 824 CEN THR 136 49.405 -8.154 30.721 1.00 0.00 C ATOM 825 H THR 136 50.246 -11.473 30.234 1.00 0.00 H ATOM 826 N SER 137 51.319 -8.761 27.631 1.00 0.00 N ATOM 827 CA SER 137 52.626 -8.546 27.022 1.00 0.00 C ATOM 828 C SER 137 52.687 -7.201 26.309 1.00 0.00 C ATOM 829 O SER 137 51.659 -6.646 25.921 1.00 0.00 O ATOM 830 CB SER 137 52.942 -9.671 26.055 1.00 0.00 C ATOM 831 CEN SER 137 52.860 -10.058 25.682 1.00 0.00 C ATOM 832 H SER 137 50.521 -8.255 27.274 1.00 0.00 H ATOM 833 N LEU 138 53.898 -6.682 26.140 1.00 0.00 N ATOM 834 CA LEU 138 54.094 -5.389 25.493 1.00 0.00 C ATOM 835 C LEU 138 53.670 -5.435 24.031 1.00 0.00 C ATOM 836 O LEU 138 53.947 -6.405 23.325 1.00 0.00 O ATOM 837 CB LEU 138 55.560 -4.955 25.611 1.00 0.00 C ATOM 838 CEN LEU 138 56.275 -3.919 26.499 1.00 0.00 C ATOM 839 H LEU 138 54.704 -7.194 26.468 1.00 0.00 H ATOM 840 N LEU 139 52.998 -4.381 23.581 1.00 0.00 N ATOM 841 CA LEU 139 52.533 -4.300 22.202 1.00 0.00 C ATOM 842 C LEU 139 53.664 -3.904 21.262 1.00 0.00 C ATOM 843 O LEU 139 53.677 -4.291 20.093 1.00 0.00 O ATOM 844 CB LEU 139 51.373 -3.303 22.091 1.00 0.00 C ATOM 845 CEN LEU 139 49.851 -3.482 21.939 1.00 0.00 C ATOM 846 H LEU 139 52.803 -3.616 24.211 1.00 0.00 H ATOM 847 N HIS 140 54.612 -3.130 21.779 1.00 0.00 N ATOM 848 CA HIS 140 55.688 -2.585 20.959 1.00 0.00 C ATOM 849 C HIS 140 56.718 -3.656 20.619 1.00 0.00 C ATOM 850 O HIS 140 57.629 -3.424 19.825 1.00 0.00 O ATOM 851 CB HIS 140 56.369 -1.411 21.669 1.00 0.00 C ATOM 852 CEN HIS 140 56.289 0.012 21.689 1.00 0.00 C ATOM 853 H HIS 140 54.588 -2.913 22.765 1.00 0.00 H ATOM 854 N GLU 141 56.567 -4.828 21.225 1.00 0.00 N ATOM 855 CA GLU 141 57.507 -5.923 21.021 1.00 0.00 C ATOM 856 C GLU 141 56.799 -7.170 20.508 1.00 0.00 C ATOM 857 O GLU 141 57.292 -8.287 20.668 1.00 0.00 O ATOM 858 CB GLU 141 58.252 -6.239 22.320 1.00 0.00 C ATOM 859 CEN GLU 141 59.635 -6.088 23.303 1.00 0.00 C ATOM 860 H GLU 141 55.779 -4.965 21.843 1.00 0.00 H ATOM 861 N ASP 142 55.639 -6.973 19.889 1.00 0.00 N ATOM 862 CA ASP 142 54.848 -8.084 19.373 1.00 0.00 C ATOM 863 C ASP 142 55.478 -8.671 18.115 1.00 0.00 C ATOM 864 O ASP 142 56.173 -7.975 17.375 1.00 0.00 O ATOM 865 CB ASP 142 53.415 -7.632 19.081 1.00 0.00 C ATOM 866 CEN ASP 142 52.489 -7.638 19.506 1.00 0.00 C ATOM 867 H ASP 142 55.296 -6.030 19.774 1.00 0.00 H ATOM 868 N GLU 143 55.230 -9.954 17.879 1.00 0.00 N ATOM 869 CA GLU 143 55.678 -10.609 16.656 1.00 0.00 C ATOM 870 C GLU 143 54.503 -11.185 15.876 1.00 0.00 C ATOM 871 O GLU 143 53.345 -10.981 16.240 1.00 0.00 O ATOM 872 CB GLU 143 56.688 -11.713 16.978 1.00 0.00 C ATOM 873 CEN GLU 143 58.300 -12.253 17.093 1.00 0.00 C ATOM 874 H GLU 143 54.717 -10.490 18.565 1.00 0.00 H ATOM 875 N ARG 144 54.808 -11.905 14.802 1.00 0.00 N ATOM 876 CA ARG 144 53.777 -12.469 13.940 1.00 0.00 C ATOM 877 C ARG 144 52.841 -13.380 14.723 1.00 0.00 C ATOM 878 O ARG 144 51.863 -13.173 14.769 1.00 0.00 O ATOM 879 CB ARG 144 54.366 -13.182 12.732 1.00 0.00 C ATOM 880 CEN ARG 144 55.167 -13.602 10.422 1.00 0.00 C ATOM 881 H ARG 144 55.780 -12.067 14.578 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 108 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 63.00 57.1 42 21.4 196 ARMSMC SECONDARY STRUCTURE . . 56.22 56.2 16 14.8 108 ARMSMC SURFACE . . . . . . . . 66.71 58.3 36 28.1 128 ARMSMC BURIED . . . . . . . . 32.78 50.0 6 8.8 68 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 76 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 68 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 47 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 51 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 37 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 40 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 22 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 9 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.10 (Number of atoms: 22) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.10 22 22.2 99 CRMSCA CRN = ALL/NP . . . . . 0.2318 CRMSCA SECONDARY STRUCTURE . . 4.98 8 14.8 54 CRMSCA SURFACE . . . . . . . . 4.97 19 29.2 65 CRMSCA BURIED . . . . . . . . 5.84 3 8.8 34 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.28 108 22.3 484 CRMSMC SECONDARY STRUCTURE . . 5.32 40 15.0 267 CRMSMC SURFACE . . . . . . . . 5.14 93 29.2 318 CRMSMC BURIED . . . . . . . . 6.03 15 9.0 166 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 6.21 20 6.0 336 CRMSSC RELIABLE SIDE CHAINS . 6.21 20 7.2 278 CRMSSC SECONDARY STRUCTURE . . 6.43 8 4.0 198 CRMSSC SURFACE . . . . . . . . 5.91 17 7.2 236 CRMSSC BURIED . . . . . . . . 7.68 3 3.0 100 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 5.28 108 14.8 732 CRMSALL SECONDARY STRUCTURE . . 5.32 40 9.7 414 CRMSALL SURFACE . . . . . . . . 5.14 93 18.8 496 CRMSALL BURIED . . . . . . . . 6.03 15 6.4 236 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.796 1.000 0.500 22 22.2 99 ERRCA SECONDARY STRUCTURE . . 4.749 1.000 0.500 8 14.8 54 ERRCA SURFACE . . . . . . . . 4.636 1.000 0.500 19 29.2 65 ERRCA BURIED . . . . . . . . 5.807 1.000 0.500 3 8.8 34 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.889 1.000 0.500 108 22.3 484 ERRMC SECONDARY STRUCTURE . . 5.037 1.000 0.500 40 15.0 267 ERRMC SURFACE . . . . . . . . 4.735 1.000 0.500 93 29.2 318 ERRMC BURIED . . . . . . . . 5.841 1.000 0.500 15 9.0 166 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.696 1.000 0.500 20 6.0 336 ERRSC RELIABLE SIDE CHAINS . 5.696 1.000 0.500 20 7.2 278 ERRSC SECONDARY STRUCTURE . . 5.921 1.000 0.500 8 4.0 198 ERRSC SURFACE . . . . . . . . 5.384 1.000 0.500 17 7.2 236 ERRSC BURIED . . . . . . . . 7.463 1.000 0.500 3 3.0 100 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.889 1.000 0.500 108 14.8 732 ERRALL SECONDARY STRUCTURE . . 5.037 1.000 0.500 40 9.7 414 ERRALL SURFACE . . . . . . . . 4.735 1.000 0.500 93 18.8 496 ERRALL BURIED . . . . . . . . 5.841 1.000 0.500 15 6.4 236 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 4 12 22 22 99 DISTCA CA (P) 0.00 0.00 4.04 12.12 22.22 99 DISTCA CA (RMS) 0.00 0.00 2.70 3.51 5.10 DISTCA ALL (N) 0 6 17 58 106 108 732 DISTALL ALL (P) 0.00 0.82 2.32 7.92 14.48 732 DISTALL ALL (RMS) 0.00 1.57 2.31 3.56 5.14 DISTALL END of the results output