####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 99 ( 396), selected 99 , name T0582AL396_1-D2 # Molecule2: number of CA atoms 99 ( 732), selected 99 , name T0582-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0582AL396_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 92 123 - 214 4.90 8.31 LCS_AVERAGE: 89.71 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 48 165 - 212 1.97 8.56 LCS_AVERAGE: 28.97 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 166 - 194 0.91 8.76 LCS_AVERAGE: 13.36 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 99 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 123 M 123 3 4 92 3 3 3 6 24 27 35 41 54 64 67 71 74 77 81 83 84 86 88 89 LCS_GDT E 124 E 124 3 4 92 3 3 3 9 15 23 30 38 44 54 62 69 72 74 79 82 84 86 88 89 LCS_GDT A 125 A 125 4 5 92 3 3 4 5 5 5 14 14 20 24 27 53 60 65 73 80 84 86 88 89 LCS_GDT E 126 E 126 4 5 92 3 3 4 5 7 11 15 21 27 37 44 53 60 66 75 81 84 86 88 89 LCS_GDT L 127 L 127 4 5 92 3 3 4 5 5 11 15 16 20 28 30 45 54 65 73 75 79 85 88 89 LCS_GDT G 128 G 128 4 5 92 3 3 4 5 7 11 15 16 20 34 37 53 60 65 73 80 84 86 88 89 LCS_GDT A 129 A 129 4 5 92 3 3 6 7 9 11 15 16 20 25 29 33 54 60 63 67 80 83 88 88 LCS_GDT P 130 P 130 3 5 92 3 4 6 8 12 20 25 36 41 57 67 75 78 79 82 83 84 86 88 89 LCS_GDT V 131 V 131 3 5 92 3 11 26 45 51 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT E 132 E 132 3 7 92 3 4 20 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT G 133 G 133 6 7 92 4 5 6 29 50 57 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT I 134 I 134 6 7 92 9 20 32 42 50 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT S 135 S 135 6 7 92 4 5 6 9 50 56 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT T 136 T 136 6 7 92 4 20 31 42 50 55 66 67 72 74 77 78 80 81 82 83 84 85 88 89 LCS_GDT S 137 S 137 6 7 92 3 5 6 13 47 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT L 138 L 138 6 7 92 3 5 31 33 50 54 60 67 71 72 77 78 79 81 82 83 84 85 86 89 LCS_GDT L 139 L 139 4 7 92 3 4 6 14 42 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT H 140 H 140 4 7 92 3 4 13 36 51 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT E 141 E 141 4 7 92 3 4 6 13 27 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT D 142 D 142 4 14 92 3 4 6 41 49 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT E 143 E 143 4 14 92 13 31 43 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT R 144 R 144 4 14 92 5 9 13 19 35 43 56 63 67 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT E 145 E 145 4 14 92 3 13 37 47 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT T 146 T 146 10 14 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT V 147 V 147 10 14 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT T 148 T 148 10 14 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT H 149 H 149 10 14 92 27 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT R 150 R 150 10 14 92 15 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT K 151 K 151 10 14 92 15 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT L 152 L 152 10 14 92 17 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT E 153 E 153 10 14 92 17 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT P 154 P 154 10 14 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT G 155 G 155 10 14 92 4 9 24 46 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT A 156 A 156 8 14 92 8 26 43 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT N 157 N 157 8 13 92 3 7 16 29 45 56 62 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT L 158 L 158 8 11 92 3 7 11 14 28 41 60 65 70 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT T 159 T 159 8 11 92 3 7 10 12 16 20 27 39 48 64 72 78 80 81 82 83 84 86 88 89 LCS_GDT S 160 S 160 8 11 92 3 7 10 12 16 20 24 29 40 50 59 69 76 80 81 83 84 86 88 89 LCS_GDT E 161 E 161 3 11 92 3 3 3 13 21 25 34 46 54 64 72 78 80 81 82 83 84 86 88 89 LCS_GDT A 162 A 162 3 33 92 3 7 11 18 28 39 44 50 61 71 75 78 80 81 82 83 84 86 88 89 LCS_GDT A 163 A 163 3 35 92 4 4 5 24 35 45 57 68 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT G 164 G 164 3 36 92 4 8 16 29 35 51 61 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT G 165 G 165 3 48 92 4 8 16 31 47 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT I 166 I 166 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT E 167 E 167 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT V 168 V 168 29 48 92 17 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT L 169 L 169 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT V 170 V 170 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT L 171 L 171 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT D 172 D 172 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT G 173 G 173 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT D 174 D 174 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT V 175 V 175 29 48 92 13 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT T 176 T 176 29 48 92 11 32 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT V 177 V 177 29 48 92 8 25 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT N 178 N 178 29 48 92 4 20 31 45 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT D 179 D 179 29 48 92 8 25 43 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT E 180 E 180 29 48 92 14 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT V 181 V 181 29 48 92 22 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT L 182 L 182 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT G 183 G 183 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT R 184 R 184 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT N 185 N 185 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT A 186 A 186 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT W 187 W 187 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT L 188 L 188 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT R 189 R 189 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT L 190 L 190 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT P 191 P 191 29 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT E 192 E 192 29 48 92 14 36 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT G 193 G 193 29 48 92 12 32 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT E 194 E 194 29 48 92 8 32 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT A 195 A 195 14 48 92 3 12 16 36 49 58 63 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT L 196 L 196 14 48 92 6 12 14 31 49 58 63 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT S 197 S 197 14 48 92 6 12 14 18 32 50 60 65 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT A 198 A 198 9 48 92 3 6 8 11 17 24 40 55 66 71 77 78 80 81 82 83 84 86 88 89 LCS_GDT T 199 T 199 4 48 92 3 5 26 44 51 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT A 200 A 200 4 48 92 3 7 12 22 35 50 60 65 70 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT G 201 G 201 11 48 92 9 25 40 46 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT A 202 A 202 11 48 92 10 25 40 45 51 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT R 203 R 203 11 48 92 11 26 40 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT G 204 G 204 11 48 92 11 35 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT A 205 A 205 11 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT K 206 K 206 11 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT I 207 I 207 11 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT W 208 W 208 11 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT M 209 M 209 11 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT K 210 K 210 11 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT T 211 T 211 11 48 92 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT G 212 G 212 3 48 92 3 8 15 31 47 58 66 68 72 74 77 78 80 81 82 83 84 86 88 89 LCS_GDT H 213 H 213 4 6 92 3 4 4 5 9 19 30 42 52 60 65 70 78 80 81 83 84 86 87 89 LCS_GDT L 214 L 214 4 6 92 3 4 4 11 13 15 17 20 24 30 39 49 58 65 69 75 79 84 85 85 LCS_GDT R 215 R 215 4 6 90 3 4 4 8 10 12 17 20 23 26 28 36 41 51 58 65 71 75 81 82 LCS_GDT F 216 F 216 4 6 89 3 4 4 8 10 12 16 20 23 29 35 45 53 58 63 67 72 74 77 82 LCS_GDT V 217 V 217 3 6 81 3 3 4 5 6 9 12 15 18 19 20 24 32 34 39 48 55 63 66 71 LCS_GDT R 218 R 218 3 6 17 3 3 4 8 10 12 13 17 18 19 20 29 32 34 35 41 41 53 58 59 LCS_GDT T 219 T 219 3 5 17 3 3 3 4 5 5 5 6 6 7 16 24 27 28 29 29 40 45 46 56 LCS_GDT P 220 P 220 3 5 17 3 3 3 4 5 5 7 10 11 14 16 16 22 23 24 28 29 34 35 38 LCS_GDT E 221 E 221 3 5 17 3 3 3 4 5 5 5 10 11 14 16 16 19 22 24 27 28 32 34 34 LCS_AVERAGE LCS_A: 44.01 ( 13.36 28.97 89.71 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 29 38 44 48 53 58 66 69 72 74 77 78 80 81 82 83 84 86 88 89 GDT PERCENT_AT 29.29 38.38 44.44 48.48 53.54 58.59 66.67 69.70 72.73 74.75 77.78 78.79 80.81 81.82 82.83 83.84 84.85 86.87 88.89 89.90 GDT RMS_LOCAL 0.30 0.53 0.76 0.94 1.19 1.47 1.87 2.08 2.27 2.37 2.60 2.68 3.01 3.06 3.19 3.45 3.50 4.09 4.35 4.41 GDT RMS_ALL_AT 9.31 9.22 9.08 8.94 8.88 8.88 8.86 8.77 8.70 8.72 8.68 8.67 8.50 8.54 8.55 8.42 8.46 8.29 8.40 8.43 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 123 M 123 11.032 4 0.635 0.635 11.032 0.714 0.357 LGA E 124 E 124 12.330 5 0.667 0.667 12.330 0.000 0.000 LGA A 125 A 125 14.105 1 0.644 0.644 14.618 0.000 0.000 LGA E 126 E 126 13.398 5 0.387 0.387 13.519 0.000 0.000 LGA L 127 L 127 14.351 4 0.108 0.108 14.398 0.000 0.000 LGA G 128 G 128 14.616 0 0.611 0.611 14.616 0.000 0.000 LGA A 129 A 129 14.801 1 0.656 0.656 14.801 0.000 0.000 LGA P 130 P 130 8.757 3 0.461 0.461 11.197 7.381 4.218 LGA V 131 V 131 3.115 3 0.634 0.634 5.271 59.762 34.150 LGA E 132 E 132 2.123 5 0.086 0.086 2.518 62.857 27.937 LGA G 133 G 133 3.432 0 0.736 0.736 4.278 48.571 48.571 LGA I 134 I 134 3.698 4 0.154 0.154 4.465 45.119 22.560 LGA S 135 S 135 3.819 2 0.054 0.054 4.402 41.786 27.857 LGA T 136 T 136 4.416 3 0.139 0.139 5.482 37.500 21.429 LGA S 137 S 137 3.186 2 0.037 0.037 4.436 46.786 31.190 LGA L 138 L 138 5.160 4 0.600 0.600 5.160 32.976 16.488 LGA L 139 L 139 3.296 4 0.634 0.634 3.296 53.690 26.845 LGA H 140 H 140 2.680 6 0.040 0.040 4.886 50.714 20.286 LGA E 141 E 141 2.907 5 0.111 0.111 2.907 64.881 28.836 LGA D 142 D 142 2.886 4 0.631 0.631 4.466 52.143 26.071 LGA E 143 E 143 1.689 5 0.099 0.099 3.955 60.238 26.772 LGA R 144 R 144 7.009 7 0.122 0.122 7.389 15.833 5.758 LGA E 145 E 145 2.987 5 0.083 0.083 3.866 61.548 27.354 LGA T 146 T 146 2.314 3 0.250 0.250 2.314 68.810 39.320 LGA V 147 V 147 1.770 3 0.068 0.068 1.959 72.857 41.633 LGA T 148 T 148 1.812 3 0.034 0.034 1.812 79.405 45.374 LGA H 149 H 149 0.992 6 0.031 0.031 1.208 88.214 35.286 LGA R 150 R 150 0.467 7 0.032 0.032 0.569 97.619 35.498 LGA K 151 K 151 0.249 5 0.035 0.035 0.355 100.000 44.444 LGA L 152 L 152 0.466 4 0.056 0.056 0.466 100.000 50.000 LGA E 153 E 153 0.488 5 0.016 0.016 0.488 100.000 44.444 LGA P 154 P 154 0.937 3 0.138 0.138 1.137 88.214 50.408 LGA G 155 G 155 2.452 0 0.231 0.231 2.860 62.857 62.857 LGA A 156 A 156 2.152 1 0.014 0.014 4.047 56.190 44.952 LGA N 157 N 157 4.263 4 0.123 0.123 5.514 35.000 17.500 LGA L 158 L 158 5.775 4 0.615 0.615 7.003 17.738 8.869 LGA T 159 T 159 8.739 3 0.666 0.666 11.483 2.619 1.497 LGA S 160 S 160 10.583 2 0.167 0.167 10.583 1.905 1.270 LGA E 161 E 161 9.333 5 0.649 0.649 9.926 0.952 0.423 LGA A 162 A 162 7.827 1 0.095 0.095 7.827 15.952 12.762 LGA A 163 A 163 5.618 1 0.272 0.272 6.520 20.595 16.476 LGA G 164 G 164 5.462 0 0.165 0.165 6.249 25.238 25.238 LGA G 165 G 165 3.853 0 0.080 0.080 3.853 51.905 51.905 LGA I 166 I 166 1.432 4 0.060 0.060 1.432 81.429 40.714 LGA E 167 E 167 0.819 5 0.123 0.123 1.086 88.214 39.206 LGA V 168 V 168 1.492 3 0.095 0.095 1.492 83.690 47.823 LGA L 169 L 169 0.855 4 0.040 0.040 0.977 90.476 45.238 LGA V 170 V 170 0.738 3 0.024 0.024 0.844 90.476 51.701 LGA L 171 L 171 1.035 4 0.018 0.018 1.035 85.952 42.976 LGA D 172 D 172 0.708 4 0.012 0.012 0.754 92.857 46.429 LGA G 173 G 173 0.414 0 0.041 0.041 0.507 97.619 97.619 LGA D 174 D 174 0.521 4 0.037 0.037 0.521 97.619 48.810 LGA V 175 V 175 0.793 3 0.124 0.124 0.793 90.476 51.701 LGA T 176 T 176 1.133 3 0.068 0.068 1.539 79.286 45.306 LGA V 177 V 177 1.411 3 0.106 0.106 1.489 81.429 46.531 LGA N 178 N 178 2.467 4 0.638 0.638 4.126 57.857 28.929 LGA D 179 D 179 1.805 4 0.034 0.034 1.805 75.000 37.500 LGA E 180 E 180 0.680 5 0.036 0.036 0.997 92.857 41.270 LGA V 181 V 181 0.464 3 0.059 0.059 0.686 97.619 55.782 LGA L 182 L 182 0.432 4 0.076 0.076 0.844 97.619 48.810 LGA G 183 G 183 0.269 0 0.087 0.087 0.434 100.000 100.000 LGA R 184 R 184 0.515 7 0.028 0.028 0.657 92.857 33.766 LGA N 185 N 185 0.868 4 0.015 0.015 0.868 90.476 45.238 LGA A 186 A 186 0.475 1 0.054 0.054 0.604 97.619 78.095 LGA W 187 W 187 0.536 10 0.071 0.071 0.739 92.857 26.531 LGA L 188 L 188 0.476 4 0.125 0.125 0.984 95.238 47.619 LGA R 189 R 189 0.345 7 0.021 0.021 0.818 92.857 33.766 LGA L 190 L 190 1.001 4 0.155 0.155 1.392 83.690 41.845 LGA P 191 P 191 1.762 3 0.057 0.057 1.762 81.548 46.599 LGA E 192 E 192 0.898 5 0.038 0.038 1.292 90.595 40.265 LGA G 193 G 193 0.497 0 0.225 0.225 2.404 86.548 86.548 LGA E 194 E 194 1.126 5 0.138 0.138 2.532 75.476 33.545 LGA A 195 A 195 3.923 1 0.236 0.236 3.923 46.786 37.429 LGA L 196 L 196 3.787 4 0.047 0.047 4.910 38.810 19.405 LGA S 197 S 197 5.082 2 0.235 0.235 5.082 39.405 26.270 LGA A 198 A 198 6.202 1 0.087 0.087 6.433 19.405 15.524 LGA T 199 T 199 3.160 3 0.030 0.030 4.801 42.024 24.014 LGA A 200 A 200 5.107 1 0.034 0.034 5.107 39.167 31.333 LGA G 201 G 201 2.410 0 0.259 0.259 3.501 55.595 55.595 LGA A 202 A 202 2.801 1 0.036 0.036 2.801 57.143 45.714 LGA R 203 R 203 2.336 7 0.179 0.179 2.509 64.881 23.593 LGA G 204 G 204 1.050 0 0.040 0.040 1.506 88.571 88.571 LGA A 205 A 205 0.595 1 0.055 0.055 0.595 97.619 78.095 LGA K 206 K 206 0.662 5 0.021 0.021 0.702 90.476 40.212 LGA I 207 I 207 0.629 4 0.106 0.106 0.681 92.857 46.429 LGA W 208 W 208 1.270 10 0.075 0.075 1.270 81.429 23.265 LGA M 209 M 209 1.152 4 0.044 0.044 1.548 79.286 39.643 LGA K 210 K 210 1.449 5 0.058 0.058 1.449 81.429 36.190 LGA T 211 T 211 1.664 3 0.079 0.079 1.976 72.857 41.633 LGA G 212 G 212 4.082 0 0.709 0.709 7.638 26.905 26.905 LGA H 213 H 213 11.077 6 0.632 0.632 14.137 0.714 0.286 LGA L 214 L 214 14.966 4 0.161 0.161 18.603 0.000 0.000 LGA R 215 R 215 18.108 7 0.066 0.066 21.025 0.000 0.000 LGA F 216 F 216 19.888 7 0.591 0.591 22.303 0.000 0.000 LGA V 217 V 217 24.932 3 0.057 0.057 25.079 0.000 0.000 LGA R 218 R 218 26.971 7 0.514 0.514 26.971 0.000 0.000 LGA T 219 T 219 27.253 3 0.674 0.674 27.888 0.000 0.000 LGA P 220 P 220 30.604 3 0.101 0.101 34.804 0.000 0.000 LGA E 221 E 221 35.383 5 0.128 0.128 37.516 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 99 396 396 100.00 732 396 54.10 99 SUMMARY(RMSD_GDC): 7.796 7.826 7.826 55.598 31.890 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 99 99 4.0 69 2.08 60.101 54.389 3.165 LGA_LOCAL RMSD: 2.080 Number of atoms: 69 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.773 Number of assigned atoms: 99 Std_ASGN_ATOMS RMSD: 7.796 Standard rmsd on all 99 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.873859 * X + -0.322483 * Y + -0.363834 * Z + 89.528999 Y_new = -0.192983 * X + 0.916950 * Y + -0.349227 * Z + -0.576874 Z_new = 0.446237 * X + -0.234961 * Y + -0.863519 * Z + 33.094604 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.924241 -0.462556 -2.875927 [DEG: -167.5467 -26.5025 -164.7785 ] ZXZ: -0.805880 2.613003 2.055449 [DEG: -46.1735 149.7141 117.7686 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0582AL396_1-D2 REMARK 2: T0582-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0582AL396_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 99 99 4.0 69 2.08 54.389 7.80 REMARK ---------------------------------------------------------- MOLECULE T0582AL396_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2qdr_A ATOM 477 N MET 123 52.137 -5.303 40.673 1.00 0.00 N ATOM 478 CA MET 123 51.088 -5.275 41.686 1.00 0.00 C ATOM 479 C MET 123 49.812 -5.871 41.131 1.00 0.00 C ATOM 480 O MET 123 49.737 -6.210 39.936 1.00 0.00 O ATOM 481 N GLU 124 48.810 -5.994 42.008 1.00 0.00 N ATOM 482 CA GLU 124 47.497 -6.550 41.655 1.00 0.00 C ATOM 483 C GLU 124 46.792 -5.708 40.586 1.00 0.00 C ATOM 484 O GLU 124 46.969 -4.490 40.523 1.00 0.00 O ATOM 485 N ALA 125 46.036 -6.378 39.721 1.00 0.00 N ATOM 486 CA ALA 125 45.275 -5.727 38.666 1.00 0.00 C ATOM 487 C ALA 125 43.995 -5.158 39.290 1.00 0.00 C ATOM 488 O ALA 125 43.563 -5.625 40.358 1.00 0.00 O ATOM 489 N GLU 126 43.388 -4.170 38.626 1.00 0.00 N ATOM 490 CA GLU 126 42.159 -3.513 39.131 1.00 0.00 C ATOM 491 C GLU 126 40.840 -4.228 38.783 1.00 0.00 C ATOM 492 O GLU 126 40.061 -4.554 39.692 1.00 0.00 O ATOM 493 N LEU 127 40.591 -4.464 37.488 1.00 0.00 N ATOM 494 CA LEU 127 39.339 -5.125 37.035 1.00 0.00 C ATOM 495 C LEU 127 39.185 -6.590 37.474 1.00 0.00 C ATOM 496 O LEU 127 40.174 -7.295 37.703 1.00 0.00 O ATOM 497 N GLY 128 37.925 -7.018 37.569 1.00 0.00 N ATOM 498 CA GLY 128 37.539 -8.383 37.971 1.00 0.00 C ATOM 499 C GLY 128 37.877 -9.450 36.910 1.00 0.00 C ATOM 500 O GLY 128 38.173 -10.606 37.249 1.00 0.00 O ATOM 501 N ALA 129 37.844 -9.058 35.635 1.00 0.00 N ATOM 502 CA ALA 129 38.127 -9.979 34.528 1.00 0.00 C ATOM 503 C ALA 129 39.631 -10.293 34.359 1.00 0.00 C ATOM 504 O ALA 129 39.978 -11.419 33.965 1.00 0.00 O ATOM 505 N PRO 130 40.502 -9.313 34.644 1.00 0.00 N ATOM 506 CA PRO 130 41.965 -9.474 34.547 1.00 0.00 C ATOM 507 C PRO 130 42.635 -9.813 35.897 1.00 0.00 C ATOM 508 O PRO 130 43.650 -9.214 36.249 1.00 0.00 O ATOM 509 N VAL 131 42.060 -10.761 36.646 1.00 0.00 N ATOM 510 CA VAL 131 42.619 -11.220 37.940 1.00 0.00 C ATOM 511 C VAL 131 43.966 -11.959 37.738 1.00 0.00 C ATOM 512 O VAL 131 44.885 -11.794 38.542 1.00 0.00 O ATOM 513 N GLU 132 44.075 -12.745 36.656 1.00 0.00 N ATOM 514 CA GLU 132 45.287 -13.502 36.305 1.00 0.00 C ATOM 515 C GLU 132 46.174 -12.651 35.411 1.00 0.00 C ATOM 516 O GLU 132 46.472 -12.988 34.258 1.00 0.00 O ATOM 517 N GLY 133 46.604 -11.537 35.983 1.00 0.00 N ATOM 518 CA GLY 133 47.443 -10.573 35.321 1.00 0.00 C ATOM 519 C GLY 133 47.919 -9.638 36.396 1.00 0.00 C ATOM 520 O GLY 133 47.407 -9.663 37.512 1.00 0.00 O ATOM 521 N ILE 134 48.926 -8.848 36.062 1.00 0.00 N ATOM 522 CA ILE 134 49.489 -7.873 36.968 1.00 0.00 C ATOM 523 C ILE 134 49.559 -6.541 36.267 1.00 0.00 C ATOM 524 O ILE 134 49.593 -6.479 35.035 1.00 0.00 O ATOM 525 N SER 135 49.645 -5.486 37.072 1.00 0.00 N ATOM 526 CA SER 135 49.628 -4.125 36.593 1.00 0.00 C ATOM 527 C SER 135 50.760 -3.275 37.177 1.00 0.00 C ATOM 528 O SER 135 51.215 -3.524 38.294 1.00 0.00 O ATOM 529 N THR 136 51.244 -2.311 36.395 1.00 0.00 N ATOM 530 CA THR 136 52.268 -1.350 36.828 1.00 0.00 C ATOM 531 C THR 136 51.780 0.043 36.515 1.00 0.00 C ATOM 532 O THR 136 51.881 0.482 35.368 1.00 0.00 O ATOM 533 N SER 137 51.257 0.739 37.520 1.00 0.00 N ATOM 534 CA SER 137 50.797 2.109 37.309 1.00 0.00 C ATOM 535 C SER 137 51.933 3.078 37.043 1.00 0.00 C ATOM 536 O SER 137 52.893 3.124 37.797 1.00 0.00 O ATOM 537 N LEU 138 51.815 3.834 35.955 1.00 0.00 N ATOM 538 CA LEU 138 52.791 4.850 35.587 1.00 0.00 C ATOM 539 C LEU 138 52.268 6.255 35.925 1.00 0.00 C ATOM 540 O LEU 138 53.059 7.147 36.271 1.00 0.00 O ATOM 541 N LEU 139 50.954 6.462 35.804 1.00 0.00 N ATOM 542 CA LEU 139 50.336 7.753 36.117 1.00 0.00 C ATOM 543 C LEU 139 48.832 7.576 36.336 1.00 0.00 C ATOM 544 O LEU 139 48.201 6.788 35.644 1.00 0.00 O ATOM 545 N HIS 140 48.273 8.348 37.266 1.00 0.00 N ATOM 546 CA HIS 140 46.852 8.298 37.599 1.00 0.00 C ATOM 547 C HIS 140 46.244 9.714 37.578 1.00 0.00 C ATOM 548 O HIS 140 46.789 10.616 38.200 1.00 0.00 O ATOM 549 N GLU 141 45.139 9.904 36.844 1.00 0.00 N ATOM 550 CA GLU 141 44.426 11.200 36.737 1.00 0.00 C ATOM 551 C GLU 141 43.810 11.583 38.041 1.00 0.00 C ATOM 552 O GLU 141 43.705 10.758 38.952 1.00 0.00 O ATOM 553 N ASP 142 43.355 12.828 38.120 1.00 0.00 N ATOM 554 CA ASP 142 42.639 13.300 39.291 1.00 0.00 C ATOM 555 C ASP 142 41.246 12.586 39.283 1.00 0.00 C ATOM 556 O ASP 142 40.636 12.404 40.343 1.00 0.00 O ATOM 557 N GLU 143 40.770 12.191 38.089 1.00 0.00 N ATOM 558 CA GLU 143 39.524 11.432 37.889 1.00 0.00 C ATOM 559 C GLU 143 39.663 9.899 38.011 1.00 0.00 C ATOM 560 O GLU 143 38.664 9.184 37.867 1.00 0.00 O ATOM 561 N ARG 144 40.870 9.382 38.258 1.00 0.00 N ATOM 562 CA ARG 144 41.085 7.930 38.383 1.00 0.00 C ATOM 563 C ARG 144 41.503 7.197 37.113 1.00 0.00 C ATOM 564 O ARG 144 41.840 6.002 37.174 1.00 0.00 O ATOM 565 N GLU 145 41.472 7.879 35.960 1.00 0.00 N ATOM 566 CA GLU 145 41.932 7.291 34.696 1.00 0.00 C ATOM 567 C GLU 145 43.458 7.263 34.745 1.00 0.00 C ATOM 568 O GLU 145 44.057 7.807 35.668 1.00 0.00 O ATOM 569 N THR 146 44.111 6.635 33.782 1.00 0.00 N ATOM 570 CA THR 146 45.566 6.607 33.826 1.00 0.00 C ATOM 571 C THR 146 46.312 5.829 32.773 1.00 0.00 C ATOM 572 O THR 146 45.758 5.447 31.751 1.00 0.00 O ATOM 573 N VAL 147 47.594 5.628 33.061 1.00 0.00 N ATOM 574 CA VAL 147 48.516 4.922 32.215 1.00 0.00 C ATOM 575 C VAL 147 49.137 3.823 33.032 1.00 0.00 C ATOM 576 O VAL 147 49.486 4.048 34.199 1.00 0.00 O ATOM 577 N THR 148 49.302 2.651 32.429 1.00 0.00 N ATOM 578 CA THR 148 49.936 1.523 33.112 1.00 0.00 C ATOM 579 C THR 148 50.393 0.453 32.145 1.00 0.00 C ATOM 580 O THR 148 49.982 0.444 30.992 1.00 0.00 O ATOM 581 N HIS 149 51.249 -0.426 32.646 1.00 0.00 N ATOM 582 CA HIS 149 51.743 -1.584 31.923 1.00 0.00 C ATOM 583 C HIS 149 50.952 -2.745 32.462 1.00 0.00 C ATOM 584 O HIS 149 50.755 -2.823 33.678 1.00 0.00 O ATOM 585 N ARG 150 50.473 -3.608 31.560 1.00 0.00 N ATOM 586 CA ARG 150 49.695 -4.800 31.904 1.00 0.00 C ATOM 587 C ARG 150 50.490 -6.033 31.512 1.00 0.00 C ATOM 588 O ARG 150 50.894 -6.166 30.356 1.00 0.00 O ATOM 589 N LYS 151 50.706 -6.928 32.470 1.00 0.00 N ATOM 590 CA LYS 151 51.421 -8.166 32.235 1.00 0.00 C ATOM 591 C LYS 151 50.376 -9.252 32.299 1.00 0.00 C ATOM 592 O LYS 151 49.778 -9.454 33.365 1.00 0.00 O ATOM 593 N LEU 152 50.121 -9.909 31.167 1.00 0.00 N ATOM 594 CA LEU 152 49.152 -10.996 31.110 1.00 0.00 C ATOM 595 C LEU 152 49.950 -12.271 31.227 1.00 0.00 C ATOM 596 O LEU 152 50.886 -12.485 30.455 1.00 0.00 O ATOM 597 N GLU 153 49.587 -13.108 32.192 1.00 0.00 N ATOM 598 CA GLU 153 50.284 -14.367 32.389 1.00 0.00 C ATOM 599 C GLU 153 49.890 -15.360 31.312 1.00 0.00 C ATOM 600 O GLU 153 48.874 -15.162 30.643 1.00 0.00 O ATOM 601 N PRO 154 50.696 -16.425 31.114 1.00 0.00 N ATOM 602 CA PRO 154 50.325 -17.455 30.134 1.00 0.00 C ATOM 603 C PRO 154 48.982 -18.141 30.466 1.00 0.00 C ATOM 604 O PRO 154 48.414 -17.906 31.521 1.00 0.00 O ATOM 605 N GLY 155 48.489 -18.978 29.565 1.00 0.00 N ATOM 606 CA GLY 155 47.203 -19.688 29.727 1.00 0.00 C ATOM 607 C GLY 155 46.032 -18.780 30.168 1.00 0.00 C ATOM 608 O GLY 155 45.209 -19.183 30.993 1.00 0.00 O ATOM 609 N ALA 156 45.974 -17.574 29.615 1.00 0.00 N ATOM 610 CA ALA 156 44.946 -16.597 29.949 1.00 0.00 C ATOM 611 C ALA 156 43.723 -16.771 29.070 1.00 0.00 C ATOM 612 O ALA 156 43.851 -17.073 27.883 1.00 0.00 O ATOM 613 N ASN 157 42.546 -16.581 29.674 1.00 0.00 N ATOM 614 CA ASN 157 41.271 -16.669 28.987 1.00 0.00 C ATOM 615 C ASN 157 40.223 -15.894 29.797 1.00 0.00 C ATOM 616 O ASN 157 39.733 -16.395 30.799 1.00 0.00 O ATOM 617 N LEU 158 39.857 -14.688 29.351 1.00 0.00 N ATOM 618 CA LEU 158 38.849 -13.866 30.087 1.00 0.00 C ATOM 619 C LEU 158 37.407 -14.413 29.994 1.00 0.00 C ATOM 620 O LEU 158 36.507 -13.838 30.595 1.00 0.00 O ATOM 621 N THR 159 37.185 -15.408 29.132 1.00 0.00 N ATOM 622 CA THR 159 35.904 -16.142 28.986 1.00 0.00 C ATOM 623 C THR 159 34.756 -15.461 28.271 1.00 0.00 C ATOM 624 O THR 159 34.074 -16.128 27.501 1.00 0.00 O ATOM 625 N SER 160 34.548 -14.158 28.484 1.00 0.00 N ATOM 626 CA SER 160 33.422 -13.453 27.888 1.00 0.00 C ATOM 627 C SER 160 33.848 -12.202 27.134 1.00 0.00 C ATOM 628 O SER 160 35.019 -11.846 27.113 1.00 0.00 O ATOM 629 N GLU 161 32.884 -11.543 26.501 1.00 0.00 N ATOM 630 CA GLU 161 33.141 -10.294 25.805 1.00 0.00 C ATOM 631 C GLU 161 33.083 -9.222 26.882 1.00 0.00 C ATOM 632 O GLU 161 32.660 -9.507 28.007 1.00 0.00 O ATOM 633 N ALA 162 31.901 -5.068 27.539 1.00 0.00 N ATOM 634 CA ALA 162 31.330 -3.795 27.159 1.00 0.00 C ATOM 635 C ALA 162 32.172 -2.802 27.975 1.00 0.00 C ATOM 636 O ALA 162 32.210 -2.868 29.211 1.00 0.00 O ATOM 637 N ALA 163 32.884 -1.930 27.269 1.00 0.00 N ATOM 638 CA ALA 163 33.784 -0.960 27.877 1.00 0.00 C ATOM 639 C ALA 163 33.267 0.475 27.778 1.00 0.00 C ATOM 640 O ALA 163 33.570 1.159 26.799 1.00 0.00 O ATOM 641 N GLY 164 32.476 0.952 28.769 1.00 0.00 N ATOM 642 CA GLY 164 31.966 2.342 28.755 1.00 0.00 C ATOM 643 C GLY 164 33.045 3.402 29.078 1.00 0.00 C ATOM 644 O GLY 164 32.889 4.194 30.000 1.00 0.00 O ATOM 645 N GLY 165 34.106 3.437 28.278 1.00 0.00 N ATOM 646 CA GLY 165 35.223 4.346 28.479 1.00 0.00 C ATOM 647 C GLY 165 36.163 4.250 27.289 1.00 0.00 C ATOM 648 O GLY 165 36.066 3.300 26.517 1.00 0.00 O ATOM 649 N ILE 166 39.882 3.692 25.664 1.00 0.00 N ATOM 650 CA ILE 166 41.110 2.949 25.942 1.00 0.00 C ATOM 651 C ILE 166 41.939 2.785 24.677 1.00 0.00 C ATOM 652 O ILE 166 41.386 2.635 23.579 1.00 0.00 O ATOM 653 N GLU 167 43.258 2.841 24.831 1.00 0.00 N ATOM 654 CA GLU 167 44.171 2.607 23.723 1.00 0.00 C ATOM 655 C GLU 167 45.326 1.850 24.319 1.00 0.00 C ATOM 656 O GLU 167 45.509 1.871 25.529 1.00 0.00 O ATOM 657 N VAL 168 46.101 1.186 23.477 1.00 0.00 N ATOM 658 CA VAL 168 47.256 0.461 23.968 1.00 0.00 C ATOM 659 C VAL 168 48.176 -0.027 22.880 1.00 0.00 C ATOM 660 O VAL 168 47.799 -0.036 21.709 1.00 0.00 O ATOM 661 N LEU 169 49.380 -0.429 23.289 1.00 0.00 N ATOM 662 CA LEU 169 50.415 -0.906 22.384 1.00 0.00 C ATOM 663 C LEU 169 51.013 -2.172 22.961 1.00 0.00 C ATOM 664 O LEU 169 51.300 -2.226 24.159 1.00 0.00 O ATOM 665 N VAL 170 51.185 -3.190 22.120 1.00 0.00 N ATOM 666 CA VAL 170 51.754 -4.468 22.544 1.00 0.00 C ATOM 667 C VAL 170 53.275 -4.424 22.452 1.00 0.00 C ATOM 668 O VAL 170 53.818 -4.250 21.363 1.00 0.00 O ATOM 669 N LEU 171 53.941 -4.632 23.585 1.00 0.00 N ATOM 670 CA LEU 171 55.398 -4.580 23.687 1.00 0.00 C ATOM 671 C LEU 171 56.067 -5.935 23.531 1.00 0.00 C ATOM 672 O LEU 171 57.185 -5.998 23.030 1.00 0.00 O ATOM 673 N ASP 172 55.406 -7.003 23.975 1.00 0.00 N ATOM 674 CA ASP 172 55.954 -8.346 23.835 1.00 0.00 C ATOM 675 C ASP 172 54.829 -9.386 23.971 1.00 0.00 C ATOM 676 O ASP 172 53.774 -9.097 24.537 1.00 0.00 O ATOM 677 N GLY 173 55.059 -10.583 23.437 1.00 0.00 N ATOM 678 CA GLY 173 54.084 -11.671 23.497 1.00 0.00 C ATOM 679 C GLY 173 52.909 -11.432 22.579 1.00 0.00 C ATOM 680 O GLY 173 53.052 -10.738 21.565 1.00 0.00 O ATOM 681 N ASP 174 51.759 -12.020 22.919 1.00 0.00 N ATOM 682 CA ASP 174 50.550 -11.842 22.114 1.00 0.00 C ATOM 683 C ASP 174 49.277 -12.001 22.898 1.00 0.00 C ATOM 684 O ASP 174 49.280 -12.465 24.027 1.00 0.00 O ATOM 685 N VAL 175 48.184 -11.633 22.246 1.00 0.00 N ATOM 686 CA VAL 175 46.851 -11.804 22.804 1.00 0.00 C ATOM 687 C VAL 175 45.817 -11.834 21.690 1.00 0.00 C ATOM 688 O VAL 175 45.670 -10.868 20.940 1.00 0.00 O ATOM 689 N THR 176 45.150 -12.978 21.558 1.00 0.00 N ATOM 690 CA THR 176 44.103 -13.154 20.571 1.00 0.00 C ATOM 691 C THR 176 42.896 -12.476 21.159 1.00 0.00 C ATOM 692 O THR 176 42.595 -12.698 22.317 1.00 0.00 O ATOM 693 N VAL 177 42.267 -11.597 20.391 1.00 0.00 N ATOM 694 CA VAL 177 41.052 -10.915 20.817 1.00 0.00 C ATOM 695 C VAL 177 40.106 -11.149 19.629 1.00 0.00 C ATOM 696 O VAL 177 40.195 -10.492 18.592 1.00 0.00 O ATOM 697 N ASN 178 39.247 -12.157 19.779 1.00 0.00 N ATOM 698 CA ASN 178 38.325 -12.555 18.737 1.00 0.00 C ATOM 699 C ASN 178 39.188 -13.356 17.794 1.00 0.00 C ATOM 700 O ASN 178 39.977 -14.178 18.240 1.00 0.00 O ATOM 701 N ASP 179 39.069 -13.087 16.502 1.00 0.00 N ATOM 702 CA ASP 179 39.883 -13.784 15.487 1.00 0.00 C ATOM 703 C ASP 179 41.124 -12.945 15.051 1.00 0.00 C ATOM 704 O ASP 179 41.802 -13.322 14.100 1.00 0.00 O ATOM 705 N GLU 180 41.426 -11.851 15.765 1.00 0.00 N ATOM 706 CA GLU 180 42.587 -11.006 15.497 1.00 0.00 C ATOM 707 C GLU 180 43.629 -11.343 16.539 1.00 0.00 C ATOM 708 O GLU 180 43.287 -11.504 17.709 1.00 0.00 O ATOM 709 N VAL 181 44.889 -11.450 16.124 1.00 0.00 N ATOM 710 CA VAL 181 45.989 -11.737 17.044 1.00 0.00 C ATOM 711 C VAL 181 46.895 -10.513 17.177 1.00 0.00 C ATOM 712 O VAL 181 47.611 -10.158 16.235 1.00 0.00 O ATOM 713 N LEU 182 46.884 -9.912 18.368 1.00 0.00 N ATOM 714 CA LEU 182 47.703 -8.753 18.668 1.00 0.00 C ATOM 715 C LEU 182 49.077 -9.263 19.079 1.00 0.00 C ATOM 716 O LEU 182 49.159 -9.997 20.046 1.00 0.00 O ATOM 717 N GLY 183 50.127 -8.871 18.353 1.00 0.00 N ATOM 718 CA GLY 183 51.521 -9.253 18.656 1.00 0.00 C ATOM 719 C GLY 183 52.351 -7.977 18.790 1.00 0.00 C ATOM 720 O GLY 183 51.801 -6.893 18.652 1.00 0.00 O ATOM 721 N ARG 184 53.653 -8.116 19.070 1.00 0.00 N ATOM 722 CA ARG 184 54.580 -6.983 19.236 1.00 0.00 C ATOM 723 C ARG 184 54.391 -5.916 18.157 1.00 0.00 C ATOM 724 O ARG 184 54.263 -6.225 16.985 1.00 0.00 O ATOM 725 N ASN 185 54.337 -4.670 18.596 1.00 0.00 N ATOM 726 CA ASN 185 54.154 -3.477 17.744 1.00 0.00 C ATOM 727 C ASN 185 52.711 -3.251 17.210 1.00 0.00 C ATOM 728 O ASN 185 52.502 -2.343 16.415 1.00 0.00 O ATOM 729 N ALA 186 51.732 -4.043 17.663 1.00 0.00 N ATOM 730 CA ALA 186 50.327 -3.832 17.266 1.00 0.00 C ATOM 731 C ALA 186 49.730 -2.851 18.264 1.00 0.00 C ATOM 732 O ALA 186 50.107 -2.830 19.434 1.00 0.00 O ATOM 733 N TRP 187 48.808 -2.034 17.787 1.00 0.00 N ATOM 734 CA TRP 187 48.147 -1.021 18.596 1.00 0.00 C ATOM 735 C TRP 187 46.635 -1.125 18.505 1.00 0.00 C ATOM 736 O TRP 187 46.101 -1.659 17.527 1.00 0.00 O ATOM 737 N LEU 188 45.946 -0.630 19.529 1.00 0.00 N ATOM 738 CA LEU 188 44.490 -0.626 19.510 1.00 0.00 C ATOM 739 C LEU 188 43.898 0.682 20.028 1.00 0.00 C ATOM 740 O LEU 188 44.575 1.480 20.679 1.00 0.00 O ATOM 741 N ARG 189 42.628 0.874 19.679 1.00 0.00 N ATOM 742 CA ARG 189 41.834 2.024 20.064 1.00 0.00 C ATOM 743 C ARG 189 40.397 1.557 20.210 1.00 0.00 C ATOM 744 O ARG 189 39.811 1.053 19.268 1.00 0.00 O ATOM 745 N LEU 190 39.851 1.720 21.402 1.00 0.00 N ATOM 746 CA LEU 190 38.504 1.309 21.719 1.00 0.00 C ATOM 747 C LEU 190 37.779 2.501 22.308 1.00 0.00 C ATOM 748 O LEU 190 37.983 2.804 23.487 1.00 0.00 O ATOM 749 N PRO 191 36.935 3.189 21.510 1.00 0.00 N ATOM 750 CA PRO 191 36.243 4.335 22.084 1.00 0.00 C ATOM 751 C PRO 191 35.154 3.880 23.055 1.00 0.00 C ATOM 752 O PRO 191 34.898 2.686 23.190 1.00 0.00 O ATOM 753 N GLU 192 34.527 4.834 23.723 1.00 0.00 N ATOM 754 CA GLU 192 33.493 4.528 24.704 1.00 0.00 C ATOM 755 C GLU 192 32.358 3.646 24.175 1.00 0.00 C ATOM 756 O GLU 192 31.869 3.857 23.081 1.00 0.00 O ATOM 757 N GLY 193 32.016 2.633 24.970 1.00 0.00 N ATOM 758 CA GLY 193 30.941 1.647 24.709 1.00 0.00 C ATOM 759 C GLY 193 31.246 0.636 23.589 1.00 0.00 C ATOM 760 O GLY 193 30.334 0.152 22.930 1.00 0.00 O ATOM 761 N GLU 194 32.524 0.303 23.410 1.00 0.00 N ATOM 762 CA GLU 194 32.936 -0.703 22.441 1.00 0.00 C ATOM 763 C GLU 194 32.694 -2.048 23.101 1.00 0.00 C ATOM 764 O GLU 194 32.713 -2.147 24.320 1.00 0.00 O ATOM 765 N ALA 195 32.470 -3.076 22.299 1.00 0.00 N ATOM 766 CA ALA 195 32.216 -4.421 22.805 1.00 0.00 C ATOM 767 C ALA 195 33.398 -5.295 22.402 1.00 0.00 C ATOM 768 O ALA 195 33.437 -5.832 21.291 1.00 0.00 O ATOM 769 N LEU 196 34.363 -5.425 23.309 1.00 0.00 N ATOM 770 CA LEU 196 35.576 -6.196 23.029 1.00 0.00 C ATOM 771 C LEU 196 35.369 -7.706 23.075 1.00 0.00 C ATOM 772 O LEU 196 34.816 -8.213 24.052 1.00 0.00 O ATOM 773 N SER 197 35.815 -8.431 22.022 1.00 0.00 N ATOM 774 CA SER 197 35.679 -9.891 22.035 1.00 0.00 C ATOM 775 C SER 197 36.494 -10.583 23.119 1.00 0.00 C ATOM 776 O SER 197 37.243 -9.944 23.848 1.00 0.00 O ATOM 777 N ALA 198 36.343 -11.895 23.195 1.00 0.00 N ATOM 778 CA ALA 198 37.038 -12.713 24.169 1.00 0.00 C ATOM 779 C ALA 198 38.541 -12.626 23.942 1.00 0.00 C ATOM 780 O ALA 198 38.979 -12.603 22.801 1.00 0.00 O ATOM 781 N THR 199 39.306 -12.554 25.031 1.00 0.00 N ATOM 782 CA THR 199 40.763 -12.474 25.012 1.00 0.00 C ATOM 783 C THR 199 41.368 -13.803 25.403 1.00 0.00 C ATOM 784 O THR 199 41.030 -14.337 26.462 1.00 0.00 O ATOM 785 N ALA 200 42.258 -14.338 24.566 1.00 0.00 N ATOM 786 CA ALA 200 42.927 -15.609 24.858 1.00 0.00 C ATOM 787 C ALA 200 44.399 -15.517 24.452 1.00 0.00 C ATOM 788 O ALA 200 44.723 -14.944 23.419 1.00 0.00 O ATOM 789 N GLY 201 45.279 -16.070 25.290 1.00 0.00 N ATOM 790 CA GLY 201 46.721 -16.115 25.019 1.00 0.00 C ATOM 791 C GLY 201 47.391 -17.212 25.841 1.00 0.00 C ATOM 792 O GLY 201 47.306 -17.220 27.064 1.00 0.00 O ATOM 793 N ALA 202 48.017 -18.155 25.144 1.00 0.00 N ATOM 794 CA ALA 202 48.715 -19.260 25.779 1.00 0.00 C ATOM 795 C ALA 202 50.109 -18.848 26.232 1.00 0.00 C ATOM 796 O ALA 202 50.655 -19.480 27.123 1.00 0.00 O ATOM 797 N ARG 203 50.672 -17.801 25.626 1.00 0.00 N ATOM 798 CA ARG 203 52.021 -17.308 25.943 1.00 0.00 C ATOM 799 C ARG 203 52.065 -16.133 26.916 1.00 0.00 C ATOM 800 O ARG 203 53.041 -15.990 27.658 1.00 0.00 O ATOM 801 N GLY 204 51.036 -15.287 26.899 1.00 0.00 N ATOM 802 CA GLY 204 50.982 -14.113 27.758 1.00 0.00 C ATOM 803 C GLY 204 51.643 -12.952 27.026 1.00 0.00 C ATOM 804 O GLY 204 51.943 -13.066 25.832 1.00 0.00 O ATOM 805 N ALA 205 51.856 -11.833 27.723 1.00 0.00 N ATOM 806 CA ALA 205 52.495 -10.668 27.109 1.00 0.00 C ATOM 807 C ALA 205 52.546 -9.422 27.971 1.00 0.00 C ATOM 808 O ALA 205 51.994 -9.399 29.068 1.00 0.00 O ATOM 809 N LYS 206 53.222 -8.396 27.449 1.00 0.00 N ATOM 810 CA LYS 206 53.376 -7.102 28.106 1.00 0.00 C ATOM 811 C LYS 206 52.706 -6.076 27.205 1.00 0.00 C ATOM 812 O LYS 206 52.947 -6.074 25.995 1.00 0.00 O ATOM 813 N ILE 207 51.903 -5.195 27.801 1.00 0.00 N ATOM 814 CA ILE 207 51.140 -4.201 27.068 1.00 0.00 C ATOM 815 C ILE 207 51.105 -2.820 27.702 1.00 0.00 C ATOM 816 O ILE 207 50.856 -2.714 28.885 1.00 0.00 O ATOM 817 N TRP 208 51.340 -1.776 26.911 1.00 0.00 N ATOM 818 CA TRP 208 51.256 -0.393 27.372 1.00 0.00 C ATOM 819 C TRP 208 49.793 -0.043 27.188 1.00 0.00 C ATOM 820 O TRP 208 49.277 -0.193 26.080 1.00 0.00 O ATOM 821 N MET 209 49.121 0.387 28.253 1.00 0.00 N ATOM 822 CA MET 209 47.696 0.709 28.191 1.00 0.00 C ATOM 823 C MET 209 47.426 2.084 28.758 1.00 0.00 C ATOM 824 O MET 209 48.101 2.507 29.696 1.00 0.00 O ATOM 825 N LYS 210 46.417 2.756 28.211 1.00 0.00 N ATOM 826 CA LYS 210 46.036 4.076 28.663 1.00 0.00 C ATOM 827 C LYS 210 44.492 4.162 28.620 1.00 0.00 C ATOM 828 O LYS 210 43.894 3.908 27.582 1.00 0.00 O ATOM 829 N THR 211 43.865 4.468 29.766 1.00 0.00 N ATOM 830 CA THR 211 42.393 4.527 29.939 1.00 0.00 C ATOM 831 C THR 211 41.960 5.820 30.620 1.00 0.00 C ATOM 832 O THR 211 42.545 6.183 31.631 1.00 0.00 O ATOM 833 N GLY 212 39.166 6.584 32.410 1.00 0.00 N ATOM 834 CA GLY 212 38.102 6.412 33.401 1.00 0.00 C ATOM 835 C GLY 212 38.554 5.493 34.517 1.00 0.00 C ATOM 836 O GLY 212 39.361 4.603 34.288 1.00 0.00 O ATOM 837 N HIS 213 38.026 5.723 35.720 1.00 0.00 N ATOM 838 CA HIS 213 38.326 4.916 36.887 1.00 0.00 C ATOM 839 C HIS 213 37.526 3.630 36.780 1.00 0.00 C ATOM 840 O HIS 213 36.291 3.659 36.890 1.00 0.00 O ATOM 841 N LEU 214 38.216 2.500 36.611 1.00 0.00 N ATOM 842 CA LEU 214 37.544 1.198 36.487 1.00 0.00 C ATOM 843 C LEU 214 37.346 0.444 37.814 1.00 0.00 C ATOM 844 O LEU 214 37.031 -0.746 37.791 1.00 0.00 O ATOM 845 N ARG 215 37.516 1.112 38.955 1.00 0.00 N ATOM 846 CA ARG 215 37.319 0.482 40.264 1.00 0.00 C ATOM 847 C ARG 215 35.838 0.452 40.642 1.00 0.00 C ATOM 848 O ARG 215 35.402 -0.390 41.431 1.00 0.00 O ATOM 849 N PHE 216 35.083 1.416 40.113 1.00 0.00 N ATOM 850 CA PHE 216 33.648 1.536 40.372 1.00 0.00 C ATOM 851 C PHE 216 32.813 0.386 39.806 1.00 0.00 C ATOM 852 O PHE 216 33.228 -0.316 38.884 1.00 0.00 O ATOM 853 N VAL 217 31.632 0.222 40.396 1.00 0.00 N ATOM 854 CA VAL 217 30.677 -0.803 40.005 1.00 0.00 C ATOM 855 C VAL 217 30.114 -0.515 38.610 1.00 0.00 C ATOM 856 O VAL 217 29.794 0.637 38.282 1.00 0.00 O ATOM 857 N ARG 218 29.986 -1.579 37.813 1.00 0.00 N ATOM 858 CA ARG 218 29.445 -1.526 36.447 1.00 0.00 C ATOM 859 C ARG 218 30.278 -0.705 35.436 1.00 0.00 C ATOM 860 O ARG 218 29.718 -0.071 34.534 1.00 0.00 O ATOM 861 N THR 219 31.602 -0.719 35.594 1.00 0.00 N ATOM 862 CA THR 219 32.516 -0.001 34.681 1.00 0.00 C ATOM 863 C THR 219 33.106 -0.929 33.606 1.00 0.00 C ATOM 864 O THR 219 33.537 -0.432 32.579 1.00 0.00 O ATOM 865 N PRO 220 33.196 -2.239 33.866 1.00 0.00 N ATOM 866 CA PRO 220 33.685 -3.226 32.891 1.00 0.00 C ATOM 867 C PRO 220 32.638 -4.308 33.016 1.00 0.00 C ATOM 868 O PRO 220 32.571 -4.996 34.034 1.00 0.00 O ATOM 869 N GLU 221 31.815 -4.446 31.979 1.00 0.00 N ATOM 870 CA GLU 221 30.688 -5.371 31.977 1.00 0.00 C ATOM 871 C GLU 221 30.933 -6.612 31.138 1.00 0.00 C ATOM 872 O GLU 221 31.042 -6.512 29.916 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 396 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 64.21 63.3 196 100.0 196 ARMSMC SECONDARY STRUCTURE . . 44.25 73.1 108 100.0 108 ARMSMC SURFACE . . . . . . . . 71.74 59.4 128 100.0 128 ARMSMC BURIED . . . . . . . . 46.83 70.6 68 100.0 68 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 76 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 68 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 47 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 51 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 37 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 40 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 22 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 9 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.80 (Number of atoms: 99) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.80 99 100.0 99 CRMSCA CRN = ALL/NP . . . . . 0.0788 CRMSCA SECONDARY STRUCTURE . . 4.52 54 100.0 54 CRMSCA SURFACE . . . . . . . . 9.03 65 100.0 65 CRMSCA BURIED . . . . . . . . 4.61 34 100.0 34 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.83 396 81.8 484 CRMSMC SECONDARY STRUCTURE . . 4.47 216 80.9 267 CRMSMC SURFACE . . . . . . . . 9.03 260 81.8 318 CRMSMC BURIED . . . . . . . . 4.74 136 81.9 166 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 336 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 278 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 198 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 236 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 100 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.83 396 54.1 732 CRMSALL SECONDARY STRUCTURE . . 4.47 216 52.2 414 CRMSALL SURFACE . . . . . . . . 9.03 260 52.4 496 CRMSALL BURIED . . . . . . . . 4.74 136 57.6 236 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.811 1.000 0.500 99 100.0 99 ERRCA SECONDARY STRUCTURE . . 3.895 1.000 0.500 54 100.0 54 ERRCA SURFACE . . . . . . . . 6.766 1.000 0.500 65 100.0 65 ERRCA BURIED . . . . . . . . 3.985 1.000 0.500 34 100.0 34 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.784 1.000 0.500 396 81.8 484 ERRMC SECONDARY STRUCTURE . . 3.854 1.000 0.500 216 80.9 267 ERRMC SURFACE . . . . . . . . 6.683 1.000 0.500 260 81.8 318 ERRMC BURIED . . . . . . . . 4.063 1.000 0.500 136 81.9 166 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 336 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 278 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 198 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 236 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 100 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.784 1.000 0.500 396 54.1 732 ERRALL SECONDARY STRUCTURE . . 3.854 1.000 0.500 216 52.2 414 ERRALL SURFACE . . . . . . . . 6.683 1.000 0.500 260 52.4 496 ERRALL BURIED . . . . . . . . 4.063 1.000 0.500 136 57.6 236 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 8 20 30 59 85 99 99 DISTCA CA (P) 8.08 20.20 30.30 59.60 85.86 99 DISTCA CA (RMS) 0.64 1.32 1.89 3.26 4.66 DISTCA ALL (N) 31 71 124 235 343 396 732 DISTALL ALL (P) 4.23 9.70 16.94 32.10 46.86 732 DISTALL ALL (RMS) 0.67 1.22 1.93 3.18 4.67 DISTALL END of the results output