####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 25 ( 202), selected 25 , name T0581TS301_1-D1 # Molecule2: number of CA atoms 105 ( 808), selected 25 , name T0581-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0581TS301_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 107 - 121 4.86 11.59 LCS_AVERAGE: 13.10 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 107 - 114 1.04 13.90 LCS_AVERAGE: 6.02 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 107 - 113 0.73 13.80 LONGEST_CONTINUOUS_SEGMENT: 7 108 - 114 0.99 14.09 LCS_AVERAGE: 4.76 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 25 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 107 L 107 7 8 15 6 6 7 8 8 8 8 9 9 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT T 108 T 108 7 8 15 6 6 7 8 8 8 8 9 9 10 11 11 14 16 19 20 21 21 22 22 LCS_GDT Y 109 Y 109 7 8 15 6 6 7 8 8 8 8 9 9 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT S 110 S 110 7 8 15 6 6 7 8 8 8 8 9 9 10 11 13 16 16 19 20 21 21 22 22 LCS_GDT F 111 F 111 7 8 15 6 6 7 8 8 8 8 9 9 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT T 112 T 112 7 8 15 6 6 7 8 8 8 8 9 9 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT E 113 E 113 7 8 15 3 6 7 8 8 8 8 9 9 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT Y 114 Y 114 7 8 15 3 3 5 8 8 8 8 9 9 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT K 115 K 115 5 7 15 4 4 5 5 7 7 8 9 9 9 9 12 14 15 18 20 21 21 22 22 LCS_GDT T 116 T 116 5 7 15 4 4 5 5 7 7 8 9 9 10 11 11 14 15 15 19 21 21 22 22 LCS_GDT N 117 N 117 5 7 15 4 4 5 5 7 7 8 9 9 10 11 12 14 15 19 20 21 21 22 22 LCS_GDT Q 118 Q 118 5 7 15 4 4 5 5 7 7 8 9 9 10 11 12 14 15 19 20 21 21 22 22 LCS_GDT P 119 P 119 5 7 15 3 4 5 5 7 7 8 9 9 10 11 12 16 16 19 20 21 21 22 22 LCS_GDT V 120 V 120 5 7 15 3 4 5 5 7 7 8 9 9 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT A 121 A 121 5 7 15 3 4 5 5 7 7 8 9 9 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT T 122 T 122 3 6 12 1 3 4 5 6 6 8 9 9 9 10 14 16 16 19 20 21 21 22 22 LCS_GDT E 123 E 123 3 3 12 0 3 3 3 4 6 6 7 8 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT R 124 R 124 3 3 12 0 3 3 4 7 7 7 8 8 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT F 125 F 125 3 5 12 3 3 3 5 7 7 7 8 8 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT D 126 D 126 4 5 12 3 4 4 5 7 7 7 8 8 9 9 10 12 14 16 18 20 21 22 22 LCS_GDT A 127 A 127 4 5 12 3 4 4 5 5 5 6 7 7 8 9 10 10 12 13 14 14 20 20 21 LCS_GDT G 128 G 128 4 5 12 3 4 4 5 5 5 6 8 8 8 9 12 13 14 16 18 20 21 22 22 LCS_GDT S 129 S 129 4 5 12 3 4 4 5 7 7 7 8 8 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT C 130 C 130 3 4 12 3 3 4 4 7 7 8 9 9 10 11 14 16 16 19 20 21 21 22 22 LCS_GDT R 131 R 131 3 4 11 0 3 4 4 4 4 4 9 9 9 10 10 10 12 13 14 16 18 22 22 LCS_AVERAGE LCS_A: 7.96 ( 4.76 6.02 13.10 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 6 7 8 8 8 8 9 9 10 11 14 16 16 19 20 21 21 22 22 GDT PERCENT_AT 5.71 5.71 6.67 7.62 7.62 7.62 7.62 8.57 8.57 9.52 10.48 13.33 15.24 15.24 18.10 19.05 20.00 20.00 20.95 20.95 GDT RMS_LOCAL 0.31 0.31 0.73 1.04 1.04 1.04 1.04 2.19 2.19 3.44 3.77 4.90 5.19 5.11 5.86 6.01 6.21 6.21 6.44 6.44 GDT RMS_ALL_AT 13.59 13.59 13.80 13.90 13.90 13.90 13.90 10.74 10.74 11.30 11.39 7.62 7.57 7.81 7.57 7.61 7.71 7.71 7.73 7.73 # Checking swapping # possible swapping detected: Y 109 Y 109 # possible swapping detected: F 111 F 111 # possible swapping detected: E 123 E 123 # possible swapping detected: D 126 D 126 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 107 L 107 1.038 0 0.101 0.880 2.712 77.381 79.762 LGA T 108 T 108 2.037 0 0.018 0.044 3.166 77.381 67.687 LGA Y 109 Y 109 1.384 0 0.051 0.153 4.653 75.119 57.579 LGA S 110 S 110 0.882 0 0.138 0.746 3.045 86.071 76.508 LGA F 111 F 111 1.168 0 0.034 0.109 5.205 88.333 56.797 LGA T 112 T 112 0.971 0 0.678 0.602 3.358 85.952 71.565 LGA E 113 E 113 3.638 0 0.657 0.536 7.120 34.167 54.868 LGA Y 114 Y 114 6.432 0 0.208 1.396 10.909 11.190 22.103 LGA K 115 K 115 13.326 0 0.647 0.790 18.476 0.000 0.000 LGA T 116 T 116 17.236 0 0.670 1.022 19.859 0.000 0.000 LGA N 117 N 117 16.695 0 0.365 0.375 20.156 0.000 0.000 LGA Q 118 Q 118 18.034 0 0.119 1.071 24.006 0.000 0.000 LGA P 119 P 119 15.435 0 0.254 0.264 19.276 0.000 0.000 LGA V 120 V 120 11.411 0 0.073 0.101 12.239 0.000 0.136 LGA A 121 A 121 10.032 0 0.588 0.583 12.834 0.000 0.571 LGA T 122 T 122 13.102 0 0.639 0.659 17.220 0.000 0.000 LGA E 123 E 123 11.403 0 0.593 1.114 12.855 0.000 0.106 LGA R 124 R 124 11.195 0 0.629 1.845 19.388 0.000 0.000 LGA F 125 F 125 9.600 0 0.593 1.479 12.935 0.119 0.909 LGA D 126 D 126 15.122 0 0.588 1.198 17.419 0.000 0.000 LGA A 127 A 127 15.668 0 0.051 0.066 17.502 0.000 0.000 LGA G 128 G 128 13.241 0 0.229 0.229 13.838 0.000 0.000 LGA S 129 S 129 9.005 0 0.444 0.398 13.306 10.000 6.667 LGA C 130 C 130 2.509 0 0.637 0.660 5.113 49.524 50.873 LGA R 131 R 131 3.663 0 0.580 1.018 6.585 38.214 48.528 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 25 100 100 100.00 202 202 100.00 105 SUMMARY(RMSD_GDC): 7.344 7.335 7.807 6.033 5.663 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 25 105 4.0 9 2.19 10.238 8.685 0.393 LGA_LOCAL RMSD: 2.190 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.737 Number of assigned atoms: 25 Std_ASGN_ATOMS RMSD: 7.344 Standard rmsd on all 25 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.595489 * X + -0.798864 * Y + -0.084904 * Z + 24.656578 Y_new = -0.066593 * X + -0.154408 * Y + 0.985760 * Z + 36.898998 Z_new = -0.800599 * X + -0.581355 * Y + -0.145147 * Z + -6.714069 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.111367 0.928294 -1.815465 [DEG: -6.3809 53.1873 -104.0185 ] ZXZ: -3.055674 1.716458 -2.198858 [DEG: -175.0772 98.3458 -125.9853 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0581TS301_1-D1 REMARK 2: T0581-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0581TS301_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 25 105 4.0 9 2.19 8.685 7.34 REMARK ---------------------------------------------------------- MOLECULE T0581TS301_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0581 REMARK MODEL 1 REMARK PARENT N/A ATOM 2 N LEU 107 22.752 22.429 -4.770 1.00 0.00 N ATOM 3 CA LEU 107 22.876 23.269 -3.591 1.00 0.00 C ATOM 4 CB LEU 107 22.573 24.728 -3.939 1.00 0.00 C ATOM 5 CG LEU 107 23.549 25.413 -4.896 1.00 0.00 C ATOM 6 CD1 LEU 107 23.054 26.803 -5.266 1.00 0.00 C ATOM 7 CD2 LEU 107 24.939 25.494 -4.279 1.00 0.00 C ATOM 8 O LEU 107 20.855 22.263 -2.787 1.00 0.00 O ATOM 9 C LEU 107 21.949 22.780 -2.499 1.00 0.00 C ATOM 10 N THR 108 22.372 22.964 -1.265 1.00 0.00 N ATOM 11 CA THR 108 21.547 22.705 -0.097 1.00 0.00 C ATOM 12 CB THR 108 22.313 21.899 0.969 1.00 0.00 C ATOM 13 CG2 THR 108 21.441 21.669 2.191 1.00 0.00 C ATOM 14 OG1 THR 108 22.691 20.627 0.427 1.00 0.00 O ATOM 15 O THR 108 21.913 24.908 0.694 1.00 0.00 O ATOM 16 C THR 108 21.089 24.043 0.452 1.00 0.00 C ATOM 17 N TYR 109 19.769 24.198 0.616 1.00 0.00 N ATOM 18 CA TYR 109 19.110 25.390 1.126 1.00 0.00 C ATOM 19 CB TYR 109 17.976 25.815 0.192 1.00 0.00 C ATOM 20 CG TYR 109 18.444 26.298 -1.162 1.00 0.00 C ATOM 21 CD1 TYR 109 18.599 25.411 -2.219 1.00 0.00 C ATOM 22 CD2 TYR 109 18.731 27.640 -1.378 1.00 0.00 C ATOM 23 CE1 TYR 109 19.028 25.843 -3.460 1.00 0.00 C ATOM 24 CE2 TYR 109 19.161 28.089 -2.612 1.00 0.00 C ATOM 25 CZ TYR 109 19.308 27.178 -3.656 1.00 0.00 C ATOM 26 OH TYR 109 19.734 27.611 -4.889 1.00 0.00 H ATOM 27 O TYR 109 17.970 23.992 2.694 1.00 0.00 O ATOM 28 C TYR 109 18.622 25.024 2.528 1.00 0.00 C ATOM 29 N SER 110 18.872 25.918 3.494 1.00 0.00 N ATOM 30 CA SER 110 18.359 25.769 4.879 1.00 0.00 C ATOM 31 CB SER 110 19.513 25.802 5.884 1.00 0.00 C ATOM 32 OG SER 110 20.375 24.693 5.708 1.00 0.00 O ATOM 33 O SER 110 17.548 28.035 4.822 1.00 0.00 O ATOM 34 C SER 110 17.352 26.853 5.200 1.00 0.00 C ATOM 35 N PHE 111 16.257 26.450 5.875 1.00 0.00 N ATOM 36 CA PHE 111 15.150 27.340 6.249 1.00 0.00 C ATOM 37 CB PHE 111 13.868 26.937 5.518 1.00 0.00 C ATOM 38 CG PHE 111 13.967 27.029 4.022 1.00 0.00 C ATOM 39 CD1 PHE 111 13.718 28.223 3.369 1.00 0.00 C ATOM 40 CD2 PHE 111 14.313 25.921 3.268 1.00 0.00 C ATOM 41 CE1 PHE 111 13.810 28.308 1.994 1.00 0.00 C ATOM 42 CE2 PHE 111 14.404 26.006 1.892 1.00 0.00 C ATOM 43 CZ PHE 111 14.154 27.193 1.254 1.00 0.00 C ATOM 44 O PHE 111 14.886 26.147 8.276 1.00 0.00 O ATOM 45 C PHE 111 15.023 27.240 7.753 1.00 0.00 C ATOM 46 N THR 112 15.189 28.367 8.450 1.00 0.00 N ATOM 47 CA THR 112 15.054 28.397 9.917 1.00 0.00 C ATOM 48 CB THR 112 16.326 28.946 10.588 1.00 0.00 C ATOM 49 CG2 THR 112 17.527 28.077 10.247 1.00 0.00 C ATOM 50 OG1 THR 112 16.580 30.278 10.125 1.00 0.00 O ATOM 51 O THR 112 13.644 29.438 11.549 1.00 0.00 O ATOM 52 C THR 112 13.856 29.239 10.351 1.00 0.00 C ATOM 53 N GLU 113 13.067 29.720 9.406 1.00 0.00 N ATOM 54 CA GLU 113 11.910 30.575 9.666 1.00 0.00 C ATOM 55 CB GLU 113 11.345 30.303 11.063 1.00 0.00 C ATOM 56 CG GLU 113 10.768 28.909 11.237 1.00 0.00 C ATOM 57 CD GLU 113 10.223 28.675 12.632 1.00 0.00 C ATOM 58 OE1 GLU 113 10.359 29.580 13.482 1.00 0.00 O ATOM 59 OE2 GLU 113 9.661 27.586 12.876 1.00 0.00 O ATOM 60 O GLU 113 11.253 32.853 9.602 1.00 0.00 O ATOM 61 C GLU 113 12.194 32.045 9.546 1.00 0.00 C ATOM 62 N TYR 114 13.486 32.396 9.406 1.00 0.00 N ATOM 63 CA TYR 114 13.874 33.776 9.210 1.00 0.00 C ATOM 64 CB TYR 114 15.240 34.045 9.847 1.00 0.00 C ATOM 65 CG TYR 114 15.246 33.934 11.353 1.00 0.00 C ATOM 66 CD1 TYR 114 15.663 32.768 11.979 1.00 0.00 C ATOM 67 CD2 TYR 114 14.833 34.998 12.145 1.00 0.00 C ATOM 68 CE1 TYR 114 15.673 32.657 13.358 1.00 0.00 C ATOM 69 CE2 TYR 114 14.836 34.906 13.524 1.00 0.00 C ATOM 70 CZ TYR 114 15.261 33.723 14.129 1.00 0.00 C ATOM 71 OH TYR 114 15.268 33.615 15.499 1.00 0.00 H ATOM 72 O TYR 114 14.101 35.414 7.449 1.00 0.00 O ATOM 73 C TYR 114 13.934 34.223 7.747 1.00 0.00 C ATOM 74 N LYS 115 13.781 33.263 6.839 1.00 0.00 N ATOM 75 CA LYS 115 13.864 33.564 5.404 1.00 0.00 C ATOM 76 CB LYS 115 13.687 32.288 4.579 1.00 0.00 C ATOM 77 CG LYS 115 14.774 31.249 4.799 1.00 0.00 C ATOM 78 CD LYS 115 16.116 31.732 4.275 1.00 0.00 C ATOM 79 CE LYS 115 17.185 30.663 4.421 1.00 0.00 C ATOM 80 NZ LYS 115 18.519 31.144 3.966 1.00 0.00 N ATOM 81 O LYS 115 11.769 34.756 5.558 1.00 0.00 O ATOM 82 C LYS 115 12.839 34.594 4.951 1.00 0.00 C ATOM 83 N THR 116 13.164 35.272 3.855 1.00 0.00 N ATOM 84 CA THR 116 12.299 36.253 3.248 1.00 0.00 C ATOM 85 CB THR 116 12.859 36.744 1.901 1.00 0.00 C ATOM 86 CG2 THR 116 11.935 37.783 1.287 1.00 0.00 C ATOM 87 OG1 THR 116 14.147 37.338 2.103 1.00 0.00 O ATOM 88 O THR 116 10.738 34.508 2.623 1.00 0.00 O ATOM 89 C THR 116 10.894 35.670 3.047 1.00 0.00 C ATOM 90 N ASN 117 9.884 36.476 3.340 1.00 0.00 N ATOM 91 CA ASN 117 8.472 36.059 3.205 1.00 0.00 C ATOM 92 CB ASN 117 7.610 36.733 4.274 1.00 0.00 C ATOM 93 CG ASN 117 6.203 36.171 4.326 1.00 0.00 C ATOM 94 ND2 ASN 117 5.281 36.937 4.898 1.00 0.00 N ATOM 95 OD1 ASN 117 5.949 35.061 3.857 1.00 0.00 O ATOM 96 O ASN 117 7.250 37.351 1.547 1.00 0.00 O ATOM 97 C ASN 117 7.993 36.388 1.804 1.00 0.00 C ATOM 98 N GLN 118 8.503 35.593 0.875 1.00 0.00 N ATOM 99 CA GLN 118 8.076 35.647 -0.501 1.00 0.00 C ATOM 100 CB GLN 118 8.909 36.668 -1.280 1.00 0.00 C ATOM 101 CG GLN 118 8.761 38.097 -0.782 1.00 0.00 C ATOM 102 CD GLN 118 7.409 38.695 -1.116 1.00 0.00 C ATOM 103 OE1 GLN 118 6.782 38.321 -2.108 1.00 0.00 O ATOM 104 NE2 GLN 118 6.955 39.628 -0.288 1.00 0.00 N ATOM 105 O GLN 118 8.731 33.310 -0.408 1.00 0.00 O ATOM 106 C GLN 118 8.210 34.230 -1.086 1.00 0.00 C ATOM 107 N PRO 119 7.615 34.000 -2.275 1.00 0.00 N ATOM 108 CA PRO 119 7.667 32.672 -2.907 1.00 0.00 C ATOM 109 CB PRO 119 6.615 32.749 -4.016 1.00 0.00 C ATOM 110 CG PRO 119 5.764 33.916 -3.645 1.00 0.00 C ATOM 111 CD PRO 119 6.698 34.946 -3.072 1.00 0.00 C ATOM 112 O PRO 119 9.374 32.711 -4.603 1.00 0.00 O ATOM 113 C PRO 119 9.067 32.400 -3.467 1.00 0.00 C ATOM 114 N VAL 120 9.921 31.895 -2.598 1.00 0.00 N ATOM 115 CA VAL 120 11.385 31.849 -2.820 1.00 0.00 C ATOM 116 CB VAL 120 12.107 31.122 -1.670 1.00 0.00 C ATOM 117 CG1 VAL 120 13.569 30.896 -2.019 1.00 0.00 C ATOM 118 CG2 VAL 120 11.981 31.914 -0.377 1.00 0.00 C ATOM 119 O VAL 120 12.538 31.740 -4.948 1.00 0.00 O ATOM 120 C VAL 120 11.775 31.187 -4.131 1.00 0.00 C ATOM 121 N ALA 121 11.247 29.982 -4.355 1.00 0.00 N ATOM 122 CA ALA 121 11.739 29.224 -5.518 1.00 0.00 C ATOM 123 CB ALA 121 11.235 27.790 -5.467 1.00 0.00 C ATOM 124 O ALA 121 12.122 30.084 -7.733 1.00 0.00 O ATOM 125 C ALA 121 11.314 29.885 -6.809 1.00 0.00 C ATOM 126 N THR 122 10.045 30.277 -6.931 1.00 0.00 N ATOM 127 CA THR 122 9.655 30.989 -8.169 1.00 0.00 C ATOM 128 CB THR 122 8.136 31.238 -8.221 1.00 0.00 C ATOM 129 CG2 THR 122 7.765 32.003 -9.482 1.00 0.00 C ATOM 130 OG1 THR 122 7.442 29.985 -8.224 1.00 0.00 O ATOM 131 O THR 122 10.691 32.765 -9.444 1.00 0.00 O ATOM 132 C THR 122 10.381 32.327 -8.315 1.00 0.00 C ATOM 133 N GLU 123 10.615 33.002 -7.190 1.00 0.00 N ATOM 134 CA GLU 123 11.285 34.282 -7.221 1.00 0.00 C ATOM 135 CB GLU 123 11.434 34.846 -5.807 1.00 0.00 C ATOM 136 CG GLU 123 12.099 36.211 -5.749 1.00 0.00 C ATOM 137 CD GLU 123 12.198 36.750 -4.336 1.00 0.00 C ATOM 138 OE1 GLU 123 11.767 36.045 -3.400 1.00 0.00 O ATOM 139 OE2 GLU 123 12.708 37.878 -4.164 1.00 0.00 O ATOM 140 O GLU 123 13.028 34.938 -8.785 1.00 0.00 O ATOM 141 C GLU 123 12.674 34.173 -7.894 1.00 0.00 C ATOM 142 N ARG 124 13.435 33.176 -7.473 1.00 0.00 N ATOM 143 CA ARG 124 14.778 32.996 -8.041 1.00 0.00 C ATOM 144 CB ARG 124 15.605 32.042 -7.175 1.00 0.00 C ATOM 145 CG ARG 124 17.018 31.808 -7.683 1.00 0.00 C ATOM 146 CD ARG 124 17.823 33.096 -7.684 1.00 0.00 C ATOM 147 NE ARG 124 19.198 32.881 -8.133 1.00 0.00 N ATOM 148 CZ ARG 124 20.032 33.857 -8.478 1.00 0.00 C ATOM 149 NH1 ARG 124 21.264 33.566 -8.874 1.00 0.00 H ATOM 150 NH2 ARG 124 19.631 35.120 -8.429 1.00 0.00 H ATOM 151 O ARG 124 15.555 32.868 -10.307 1.00 0.00 O ATOM 152 C ARG 124 14.728 32.467 -9.485 1.00 0.00 C ATOM 153 N PHE 125 13.760 31.601 -9.798 1.00 0.00 N ATOM 154 CA PHE 125 13.611 31.141 -11.152 1.00 0.00 C ATOM 155 CB PHE 125 12.417 30.191 -11.269 1.00 0.00 C ATOM 156 CG PHE 125 12.160 29.710 -12.668 1.00 0.00 C ATOM 157 CD1 PHE 125 12.582 28.458 -13.073 1.00 0.00 C ATOM 158 CD2 PHE 125 11.493 30.512 -13.579 1.00 0.00 C ATOM 159 CE1 PHE 125 12.346 28.014 -14.361 1.00 0.00 C ATOM 160 CE2 PHE 125 11.256 30.069 -14.866 1.00 0.00 C ATOM 161 CZ PHE 125 11.680 28.827 -15.259 1.00 0.00 C ATOM 162 O PHE 125 14.121 32.374 -13.126 1.00 0.00 O ATOM 163 C PHE 125 13.448 32.304 -12.099 1.00 0.00 C ATOM 164 N ASP 126 12.571 33.236 -11.739 1.00 0.00 N ATOM 165 CA ASP 126 12.242 34.356 -12.593 1.00 0.00 C ATOM 166 CB ASP 126 10.940 35.016 -12.135 1.00 0.00 C ATOM 167 CG ASP 126 9.721 34.159 -12.419 1.00 0.00 C ATOM 168 OD1 ASP 126 9.844 33.195 -13.204 1.00 0.00 O ATOM 169 OD2 ASP 126 8.644 34.452 -11.857 1.00 0.00 O ATOM 170 O ASP 126 13.685 35.942 -13.693 1.00 0.00 O ATOM 171 C ASP 126 13.354 35.390 -12.624 1.00 0.00 C ATOM 172 N ALA 127 13.947 35.665 -11.473 1.00 0.00 N ATOM 173 CA ALA 127 14.929 36.731 -11.414 1.00 0.00 C ATOM 174 CB ALA 127 15.178 37.142 -9.969 1.00 0.00 C ATOM 175 O ALA 127 16.886 37.227 -12.686 1.00 0.00 O ATOM 176 C ALA 127 16.251 36.352 -12.056 1.00 0.00 C ATOM 177 N GLY 128 16.675 35.094 -11.856 1.00 0.00 N ATOM 178 CA GLY 128 17.986 34.647 -12.280 1.00 0.00 C ATOM 179 O GLY 128 19.001 33.338 -13.967 1.00 0.00 O ATOM 180 C GLY 128 17.962 33.737 -13.506 1.00 0.00 C ATOM 181 N SER 129 16.780 33.398 -14.019 1.00 0.00 N ATOM 182 CA SER 129 16.667 32.555 -15.203 1.00 0.00 C ATOM 183 CB SER 129 17.239 33.271 -16.428 1.00 0.00 C ATOM 184 OG SER 129 16.524 34.462 -16.702 1.00 0.00 O ATOM 185 O SER 129 18.185 30.791 -15.815 1.00 0.00 O ATOM 186 C SER 129 17.369 31.244 -14.993 1.00 0.00 C ATOM 187 N CYS 130 17.033 30.629 -13.865 1.00 0.00 N ATOM 188 CA CYS 130 17.505 29.304 -13.543 1.00 0.00 C ATOM 189 CB CYS 130 18.273 29.317 -12.219 1.00 0.00 C ATOM 190 SG CYS 130 19.737 30.379 -12.217 1.00 0.00 S ATOM 191 O CYS 130 15.233 28.682 -13.144 1.00 0.00 O ATOM 192 C CYS 130 16.370 28.313 -13.465 1.00 0.00 C ATOM 193 N ARG 131 16.673 27.059 -13.805 1.00 0.00 N ATOM 194 CA ARG 131 15.747 25.957 -13.598 1.00 0.00 C ATOM 195 CB ARG 131 15.844 24.953 -14.750 1.00 0.00 C ATOM 196 CG ARG 131 15.431 25.515 -16.099 1.00 0.00 C ATOM 197 CD ARG 131 15.520 24.459 -17.189 1.00 0.00 C ATOM 198 NE ARG 131 16.902 24.061 -17.454 1.00 0.00 N ATOM 199 CZ ARG 131 17.253 23.101 -18.303 1.00 0.00 C ATOM 200 NH1 ARG 131 18.535 22.809 -18.478 1.00 0.00 H ATOM 201 NH2 ARG 131 16.323 22.437 -18.973 1.00 0.00 H ATOM 202 O ARG 131 17.164 25.365 -11.750 1.00 0.00 O ATOM 203 C ARG 131 16.031 25.276 -12.271 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 202 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.54 33.3 48 23.1 208 ARMSMC SECONDARY STRUCTURE . . 96.87 40.7 27 18.5 146 ARMSMC SURFACE . . . . . . . . 97.23 22.6 31 22.5 138 ARMSMC BURIED . . . . . . . . 89.42 52.9 17 24.3 70 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.58 63.6 22 24.4 90 ARMSSC1 RELIABLE SIDE CHAINS . 72.24 61.9 21 25.3 83 ARMSSC1 SECONDARY STRUCTURE . . 67.79 61.5 13 19.7 66 ARMSSC1 SURFACE . . . . . . . . 75.41 64.3 14 23.0 61 ARMSSC1 BURIED . . . . . . . . 61.23 62.5 8 27.6 29 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 58.74 64.3 14 22.6 62 ARMSSC2 RELIABLE SIDE CHAINS . 51.33 75.0 12 26.7 45 ARMSSC2 SECONDARY STRUCTURE . . 75.32 62.5 8 18.2 44 ARMSSC2 SURFACE . . . . . . . . 43.43 66.7 9 21.4 42 ARMSSC2 BURIED . . . . . . . . 79.16 60.0 5 25.0 20 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.81 83.3 6 24.0 25 ARMSSC3 RELIABLE SIDE CHAINS . 15.79 100.0 5 25.0 20 ARMSSC3 SECONDARY STRUCTURE . . 17.27 100.0 3 16.7 18 ARMSSC3 SURFACE . . . . . . . . 69.73 80.0 5 21.7 23 ARMSSC3 BURIED . . . . . . . . 29.79 100.0 1 50.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.18 0.0 3 27.3 11 ARMSSC4 RELIABLE SIDE CHAINS . 93.18 0.0 3 27.3 11 ARMSSC4 SECONDARY STRUCTURE . . 86.22 0.0 1 16.7 6 ARMSSC4 SURFACE . . . . . . . . 93.18 0.0 3 27.3 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.34 (Number of atoms: 25) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.34 25 23.8 105 CRMSCA CRN = ALL/NP . . . . . 0.2938 CRMSCA SECONDARY STRUCTURE . . 6.12 14 19.2 73 CRMSCA SURFACE . . . . . . . . 7.83 16 22.9 70 CRMSCA BURIED . . . . . . . . 6.40 9 25.7 35 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.51 124 23.9 518 CRMSMC SECONDARY STRUCTURE . . 6.35 70 19.3 362 CRMSMC SURFACE . . . . . . . . 7.88 79 22.9 345 CRMSMC BURIED . . . . . . . . 6.81 45 26.0 173 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.36 102 26.3 388 CRMSSC RELIABLE SIDE CHAINS . 8.34 94 28.8 326 CRMSSC SECONDARY STRUCTURE . . 7.60 61 21.9 279 CRMSSC SURFACE . . . . . . . . 9.23 61 23.7 257 CRMSSC BURIED . . . . . . . . 6.88 41 31.3 131 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.87 202 25.0 808 CRMSALL SECONDARY STRUCTURE . . 6.97 117 20.5 571 CRMSALL SURFACE . . . . . . . . 8.46 125 23.3 537 CRMSALL BURIED . . . . . . . . 6.81 77 28.4 271 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.839 1.000 0.500 25 23.8 105 ERRCA SECONDARY STRUCTURE . . 5.925 1.000 0.500 14 19.2 73 ERRCA SURFACE . . . . . . . . 7.193 1.000 0.500 16 22.9 70 ERRCA BURIED . . . . . . . . 6.208 1.000 0.500 9 25.7 35 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.993 1.000 0.500 124 23.9 518 ERRMC SECONDARY STRUCTURE . . 6.067 1.000 0.500 70 19.3 362 ERRMC SURFACE . . . . . . . . 7.194 1.000 0.500 79 22.9 345 ERRMC BURIED . . . . . . . . 6.639 1.000 0.500 45 26.0 173 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.667 1.000 0.500 102 26.3 388 ERRSC RELIABLE SIDE CHAINS . 7.625 1.000 0.500 94 28.8 326 ERRSC SECONDARY STRUCTURE . . 7.114 1.000 0.500 61 21.9 279 ERRSC SURFACE . . . . . . . . 8.513 1.000 0.500 61 23.7 257 ERRSC BURIED . . . . . . . . 6.409 1.000 0.500 41 31.3 131 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.263 1.000 0.500 202 25.0 808 ERRALL SECONDARY STRUCTURE . . 6.545 1.000 0.500 117 20.5 571 ERRALL SURFACE . . . . . . . . 7.742 1.000 0.500 125 23.3 537 ERRALL BURIED . . . . . . . . 6.485 1.000 0.500 77 28.4 271 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 6 22 25 105 DISTCA CA (P) 0.00 0.95 1.90 5.71 20.95 105 DISTCA CA (RMS) 0.00 1.80 2.07 3.32 6.59 DISTCA ALL (N) 0 6 23 48 170 202 808 DISTALL ALL (P) 0.00 0.74 2.85 5.94 21.04 808 DISTALL ALL (RMS) 0.00 1.63 2.43 3.34 6.81 DISTALL END of the results output