####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 94 ( 376), selected 94 , name T0581AL396_1-D1 # Molecule2: number of CA atoms 105 ( 808), selected 94 , name T0581-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0581AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 60 - 86 4.98 32.68 LCS_AVERAGE: 19.97 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 72 - 82 1.96 33.73 LCS_AVERAGE: 5.85 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 72 - 80 0.50 33.62 LCS_AVERAGE: 4.29 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 94 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 27 L 27 0 4 23 1 1 2 3 6 9 11 13 14 16 20 23 25 26 27 29 30 34 36 37 LCS_GDT S 28 S 28 0 4 23 0 3 5 6 8 9 12 14 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT E 32 E 32 3 4 23 1 3 4 5 7 8 12 14 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT K 33 K 33 3 4 23 3 3 4 5 7 8 12 14 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT V 34 V 34 3 4 23 3 4 4 6 8 9 11 14 16 18 20 23 25 27 30 32 33 34 36 37 LCS_GDT A 35 A 35 3 4 23 3 4 5 6 8 9 12 14 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT K 36 K 36 3 4 23 3 4 5 6 8 9 12 14 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT E 37 E 37 3 5 23 3 3 3 4 6 9 11 14 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT S 38 S 38 3 6 23 3 3 3 4 6 7 9 10 14 16 18 21 25 26 27 29 33 34 36 37 LCS_GDT S 39 S 39 4 6 23 3 3 4 4 6 7 9 9 14 16 18 19 25 26 27 32 33 34 36 37 LCS_GDT V 40 V 40 4 6 23 3 3 4 4 6 7 9 13 14 17 20 23 26 28 30 32 33 34 36 37 LCS_GDT G 41 G 41 4 6 23 3 4 5 5 6 9 11 13 14 17 20 23 26 28 30 32 33 34 36 37 LCS_GDT T 42 T 42 4 6 23 3 4 5 5 6 7 9 11 13 16 19 23 26 28 30 32 33 34 36 37 LCS_GDT P 43 P 43 4 6 23 2 4 5 5 6 8 12 14 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT R 44 R 44 4 5 23 3 4 5 6 8 9 12 14 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT A 45 A 45 3 5 23 3 3 5 6 8 9 12 14 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT I 46 I 46 3 5 23 3 3 5 6 8 9 12 14 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT N 47 N 47 4 5 23 4 4 4 5 5 7 7 9 10 14 16 20 23 26 27 32 33 33 36 37 LCS_GDT E 48 E 48 4 5 23 4 4 4 5 5 7 9 13 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT D 49 D 49 4 5 23 4 4 4 5 5 9 12 14 16 18 20 23 25 28 30 32 33 34 36 37 LCS_GDT I 50 I 50 4 5 23 4 4 5 6 8 9 12 14 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT L 51 L 51 3 5 23 3 4 4 5 5 6 7 9 14 17 20 23 26 28 30 32 33 34 36 37 LCS_GDT D 52 D 52 4 5 23 3 4 4 4 6 7 7 9 10 12 14 16 18 21 27 28 31 34 36 37 LCS_GDT Q 53 Q 53 4 5 12 3 4 4 4 6 7 7 9 9 11 14 16 18 20 22 23 27 31 31 36 LCS_GDT G 54 G 54 4 5 12 3 4 4 4 6 7 7 12 14 16 18 20 22 24 25 27 28 29 29 30 LCS_GDT Y 55 Y 55 4 5 12 1 4 4 4 6 8 10 12 18 21 23 23 25 26 26 27 29 31 31 33 LCS_GDT T 56 T 56 3 5 12 2 3 4 4 6 8 16 17 18 21 23 23 25 26 26 27 29 31 31 37 LCS_GDT G 59 G 59 3 4 10 3 3 3 4 4 4 4 6 7 7 9 10 19 21 22 25 29 30 32 37 LCS_GDT N 60 N 60 3 4 27 3 3 3 4 4 4 4 6 7 7 9 9 12 18 20 25 27 30 30 33 LCS_GDT Q 61 Q 61 3 4 27 3 3 3 4 6 6 7 7 8 9 15 19 22 24 26 27 30 34 36 37 LCS_GDT L 62 L 62 3 4 27 3 3 3 4 6 7 7 7 9 10 15 19 21 24 27 28 31 34 36 37 LCS_GDT I 63 I 63 3 3 27 3 3 3 4 6 7 7 9 16 19 20 22 26 28 30 32 33 34 36 37 LCS_GDT N 64 N 64 3 3 27 3 3 4 5 7 8 12 14 16 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT H 65 H 65 3 3 27 3 3 3 3 6 7 9 14 17 20 20 23 26 28 30 32 33 34 36 37 LCS_GDT L 66 L 66 3 3 27 1 3 4 7 8 12 15 17 19 21 23 23 25 26 26 27 29 31 32 35 LCS_GDT S 67 S 67 3 3 27 1 3 4 4 6 12 16 17 19 21 23 23 25 26 26 27 29 31 32 32 LCS_GDT V 68 V 68 3 5 27 3 3 4 4 8 12 16 17 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT R 69 R 69 4 5 27 4 4 4 7 9 12 16 17 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT A 70 A 70 4 5 27 4 4 4 5 9 11 13 16 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT S 71 S 71 4 5 27 4 4 4 6 9 12 13 16 19 21 23 23 24 26 26 27 29 30 30 31 LCS_GDT H 72 H 72 9 11 27 5 9 9 9 9 12 16 17 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT A 73 A 73 9 11 27 6 9 9 9 9 12 16 17 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT E 74 E 74 9 11 27 6 9 9 9 9 12 16 17 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT R 75 R 75 9 11 27 6 9 9 9 9 12 16 17 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT M 76 M 76 9 11 27 6 9 9 9 9 12 16 17 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT R 77 R 77 9 11 27 6 9 9 9 9 12 16 17 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT S 78 S 78 9 11 27 6 9 9 9 9 12 16 17 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT N 79 N 79 9 11 27 4 9 9 9 9 12 14 16 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT P 80 P 80 9 11 27 4 9 9 9 9 12 16 17 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT D 81 D 81 5 11 27 4 5 5 5 9 12 14 17 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT S 82 S 82 5 11 27 4 5 5 6 9 12 16 17 19 21 23 23 25 26 26 27 29 30 30 31 LCS_GDT V 83 V 83 5 6 27 4 5 5 5 8 10 13 16 19 21 23 23 25 26 26 27 29 30 30 33 LCS_GDT R 84 R 84 3 5 27 3 3 3 4 8 12 16 17 19 21 23 23 25 26 26 27 29 32 32 36 LCS_GDT S 85 S 85 3 5 27 0 3 3 7 9 12 16 17 19 21 23 23 25 26 26 27 30 32 36 37 LCS_GDT Q 86 Q 86 3 5 27 0 4 4 4 8 12 16 17 19 21 23 23 25 26 30 32 33 34 36 37 LCS_GDT L 87 L 87 3 4 26 0 3 4 4 6 7 8 11 13 16 17 20 20 22 24 27 30 32 36 37 LCS_GDT G 88 G 88 3 4 24 0 3 4 4 4 7 7 7 10 12 14 17 20 21 22 23 29 32 35 37 LCS_GDT S 93 S 93 3 4 20 3 3 3 5 6 8 10 13 15 18 20 23 25 28 30 32 33 34 36 37 LCS_GDT N 94 N 94 8 9 14 6 8 8 8 8 9 10 13 15 18 20 23 26 28 30 32 33 34 36 37 LCS_GDT T 95 T 95 8 9 14 6 8 8 8 8 9 9 11 12 15 19 21 26 28 30 32 33 34 36 37 LCS_GDT G 96 G 96 8 9 14 6 8 8 8 8 9 9 9 11 14 15 17 18 21 24 28 28 33 34 36 LCS_GDT Y 97 Y 97 8 9 15 6 8 8 8 8 9 9 11 12 14 16 18 26 28 30 32 33 34 36 37 LCS_GDT R 98 R 98 8 9 19 6 8 8 8 8 9 9 9 12 15 19 22 26 28 30 32 33 34 36 37 LCS_GDT Q 99 Q 99 8 9 19 6 8 8 8 8 9 9 9 11 13 14 15 17 21 24 27 28 31 34 37 LCS_GDT L 100 L 100 8 9 19 5 8 8 8 8 9 9 9 11 13 15 17 18 21 24 28 28 31 33 37 LCS_GDT L 101 L 101 8 9 19 5 8 8 8 8 9 9 11 12 15 19 22 26 28 30 32 33 34 36 37 LCS_GDT A 102 A 102 3 9 19 1 3 4 6 8 10 10 11 12 15 19 21 26 28 30 32 33 34 36 37 LCS_GDT R 103 R 103 0 8 19 0 0 4 4 4 6 9 11 12 14 19 21 26 28 30 32 33 34 36 37 LCS_GDT I 106 I 106 6 8 19 3 5 6 6 8 10 10 11 12 14 15 15 16 18 20 25 30 32 35 37 LCS_GDT L 107 L 107 6 8 19 3 5 6 6 8 10 10 11 12 14 15 15 16 17 19 19 21 22 23 23 LCS_GDT T 108 T 108 6 8 19 3 5 6 6 8 10 10 11 12 14 15 15 16 17 19 19 21 22 23 23 LCS_GDT Y 109 Y 109 6 8 19 3 5 6 6 8 10 10 11 12 14 15 15 16 17 19 19 21 22 23 23 LCS_GDT S 110 S 110 6 8 19 3 5 6 6 8 10 10 11 12 14 15 15 16 17 19 19 21 22 23 23 LCS_GDT F 111 F 111 6 8 19 3 5 6 6 8 10 10 11 12 14 15 15 16 17 19 19 21 22 23 23 LCS_GDT T 112 T 112 4 8 19 3 4 4 6 8 10 10 11 12 14 15 15 16 17 19 19 21 22 23 23 LCS_GDT E 113 E 113 5 7 19 4 4 5 5 6 7 9 10 12 14 15 15 16 17 19 19 21 22 23 23 LCS_GDT Y 114 Y 114 5 6 19 4 4 5 5 7 10 10 11 12 14 15 15 16 17 19 19 21 22 23 23 LCS_GDT K 115 K 115 5 5 19 4 4 5 5 5 5 6 11 12 14 15 15 16 17 19 19 21 22 23 23 LCS_GDT T 116 T 116 5 5 19 4 4 5 5 5 10 10 11 12 14 15 15 16 17 19 19 21 22 23 23 LCS_GDT N 117 N 117 5 5 19 3 4 5 5 6 8 10 11 12 14 15 15 16 17 19 19 21 22 23 23 LCS_GDT Q 118 Q 118 3 4 19 3 3 3 3 5 7 8 9 10 10 12 15 15 17 19 19 21 22 23 23 LCS_GDT P 119 P 119 3 4 17 3 3 3 5 5 5 6 8 8 9 11 14 15 15 17 18 19 19 21 21 LCS_GDT V 120 V 120 3 4 13 3 3 3 5 5 5 6 8 8 9 10 12 14 15 17 18 19 19 21 21 LCS_GDT A 121 A 121 3 4 13 3 3 3 5 5 5 6 8 8 10 11 13 14 15 17 18 19 19 21 21 LCS_GDT T 122 T 122 3 4 13 1 3 3 5 5 5 6 8 8 10 11 13 14 15 17 18 19 19 21 21 LCS_GDT E 123 E 123 3 3 13 0 3 3 5 5 5 6 8 9 10 11 13 14 15 17 18 19 19 21 21 LCS_GDT R 124 R 124 4 6 13 0 3 4 5 5 6 7 8 9 10 11 13 14 15 17 18 19 19 21 21 LCS_GDT F 125 F 125 4 6 13 2 3 4 5 5 6 7 8 9 10 11 13 14 15 17 18 19 19 21 21 LCS_GDT D 126 D 126 4 6 12 2 3 4 5 5 6 7 8 9 10 11 13 14 15 17 18 19 19 21 21 LCS_GDT A 127 A 127 4 6 12 2 3 4 5 5 6 7 8 9 9 11 13 14 15 17 18 19 19 21 21 LCS_GDT G 128 G 128 3 6 12 2 3 3 4 5 6 7 8 9 9 11 13 13 15 15 17 19 19 21 21 LCS_GDT S 129 S 129 3 6 12 0 3 3 5 5 6 7 8 9 10 11 13 14 15 17 18 19 19 21 21 LCS_GDT C 130 C 130 3 3 12 1 3 3 5 5 5 7 8 9 10 11 13 14 15 17 18 19 19 21 21 LCS_GDT R 131 R 131 3 3 12 0 3 3 5 5 5 5 8 9 9 10 12 13 14 15 16 17 19 21 21 LCS_AVERAGE LCS_A: 10.03 ( 4.29 5.85 19.97 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 9 9 9 9 12 16 17 19 21 23 23 26 28 30 32 33 34 36 37 GDT PERCENT_AT 5.71 8.57 8.57 8.57 8.57 11.43 15.24 16.19 18.10 20.00 21.90 21.90 24.76 26.67 28.57 30.48 31.43 32.38 34.29 35.24 GDT RMS_LOCAL 0.27 0.50 0.50 0.50 0.50 2.06 2.66 2.76 3.14 3.31 3.54 3.54 4.92 5.06 5.34 5.55 5.68 5.92 6.35 6.40 GDT RMS_ALL_AT 33.37 33.62 33.62 33.62 33.62 33.96 33.54 33.51 33.92 33.86 33.81 33.81 28.52 28.31 28.26 28.21 28.23 28.24 28.45 28.56 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 27 L 27 41.910 4 0.184 0.184 42.556 0.000 0.000 LGA S 28 S 28 38.496 2 0.021 0.021 39.857 0.000 0.000 LGA E 32 E 32 33.339 5 0.617 0.617 34.865 0.000 0.000 LGA K 33 K 33 35.832 5 0.592 0.592 35.832 0.000 0.000 LGA V 34 V 34 34.806 3 0.603 0.603 35.365 0.000 0.000 LGA A 35 A 35 28.967 1 0.263 0.263 31.172 0.000 0.000 LGA K 36 K 36 33.999 5 0.593 0.593 34.804 0.000 0.000 LGA E 37 E 37 34.921 5 0.616 0.616 35.575 0.000 0.000 LGA S 38 S 38 34.546 2 0.496 0.496 34.546 0.000 0.000 LGA S 39 S 39 33.020 2 0.702 0.702 33.350 0.000 0.000 LGA V 40 V 40 35.216 3 0.629 0.629 35.216 0.000 0.000 LGA G 41 G 41 34.880 0 0.284 0.284 35.229 0.000 0.000 LGA T 42 T 42 28.332 3 0.659 0.659 30.762 0.000 0.000 LGA P 43 P 43 26.216 3 0.605 0.605 27.787 0.000 0.000 LGA R 44 R 44 28.716 7 0.610 0.610 28.716 0.000 0.000 LGA A 45 A 45 26.748 1 0.623 0.623 27.832 0.000 0.000 LGA I 46 I 46 20.840 4 0.068 0.068 22.735 0.000 0.000 LGA N 47 N 47 24.068 4 0.585 0.585 24.972 0.000 0.000 LGA E 48 E 48 27.888 5 0.092 0.092 27.888 0.000 0.000 LGA D 49 D 49 22.322 4 0.070 0.070 23.932 0.000 0.000 LGA I 50 I 50 17.309 4 0.608 0.608 19.352 0.000 0.000 LGA L 51 L 51 19.884 4 0.642 0.642 19.884 0.000 0.000 LGA D 52 D 52 18.028 4 0.609 0.609 18.788 0.000 0.000 LGA Q 53 Q 53 15.278 5 0.173 0.173 15.643 0.000 0.000 LGA G 54 G 54 11.127 0 0.620 0.620 12.551 3.690 3.690 LGA Y 55 Y 55 5.537 8 0.019 0.019 7.763 17.024 5.675 LGA T 56 T 56 3.437 3 0.277 0.277 5.181 39.167 22.381 LGA G 59 G 59 11.342 0 0.463 0.463 13.404 0.119 0.119 LGA N 60 N 60 12.862 4 0.212 0.212 14.114 0.000 0.000 LGA Q 61 Q 61 12.153 5 0.618 0.618 13.563 0.000 0.000 LGA L 62 L 62 12.316 4 0.629 0.629 12.316 0.000 0.000 LGA I 63 I 63 7.920 4 0.641 0.641 9.498 3.690 1.845 LGA N 64 N 64 8.813 4 0.643 0.643 8.813 4.405 2.202 LGA H 65 H 65 7.843 6 0.636 0.636 8.962 6.190 2.476 LGA L 66 L 66 4.468 4 0.635 0.635 5.094 37.619 18.810 LGA S 67 S 67 3.017 2 0.651 0.651 3.681 53.810 35.873 LGA V 68 V 68 3.146 3 0.630 0.630 3.146 57.262 32.721 LGA R 69 R 69 2.570 7 0.600 0.600 3.006 57.262 20.823 LGA A 70 A 70 5.998 1 0.058 0.058 7.065 22.976 18.381 LGA S 71 S 71 6.085 2 0.261 0.261 6.085 31.310 20.873 LGA H 72 H 72 2.276 6 0.623 0.623 2.276 68.810 27.524 LGA A 73 A 73 2.591 1 0.050 0.050 2.591 66.905 53.524 LGA E 74 E 74 2.429 5 0.000 0.000 2.451 64.762 28.783 LGA R 75 R 75 2.259 7 0.053 0.053 3.149 63.095 22.944 LGA M 76 M 76 2.177 4 0.000 0.000 2.339 68.810 34.405 LGA R 77 R 77 1.074 7 0.103 0.103 2.381 75.119 27.316 LGA S 78 S 78 3.349 2 0.129 0.129 4.822 45.833 30.556 LGA N 79 N 79 4.887 4 0.487 0.487 4.887 42.024 21.012 LGA P 80 P 80 3.101 3 0.000 0.000 3.891 51.905 29.660 LGA D 81 D 81 3.844 4 0.061 0.061 4.403 45.119 22.560 LGA S 82 S 82 3.262 2 0.577 0.577 3.904 48.452 32.302 LGA V 83 V 83 5.574 3 0.055 0.055 5.574 31.786 18.163 LGA R 84 R 84 2.578 7 0.567 0.567 3.306 59.286 21.558 LGA S 85 S 85 1.961 2 0.558 0.558 2.674 73.333 48.889 LGA Q 86 Q 86 2.624 5 0.606 0.606 5.507 42.381 18.836 LGA L 87 L 87 10.075 4 0.578 0.578 12.056 2.500 1.250 LGA G 88 G 88 13.737 0 0.503 0.503 13.804 0.000 0.000 LGA S 93 S 93 19.062 2 0.139 0.139 19.901 0.000 0.000 LGA N 94 N 94 19.996 4 0.628 0.628 20.247 0.000 0.000 LGA T 95 T 95 19.966 3 0.072 0.072 21.104 0.000 0.000 LGA G 96 G 96 22.741 0 0.033 0.033 23.963 0.000 0.000 LGA Y 97 Y 97 23.241 8 0.000 0.000 23.988 0.000 0.000 LGA R 98 R 98 22.043 7 0.039 0.039 23.220 0.000 0.000 LGA Q 99 Q 99 23.037 5 0.066 0.066 24.973 0.000 0.000 LGA L 100 L 100 25.956 4 0.493 0.493 29.408 0.000 0.000 LGA L 101 L 101 26.867 4 0.611 0.611 28.537 0.000 0.000 LGA A 102 A 102 31.940 1 0.675 0.675 35.940 0.000 0.000 LGA R 103 R 103 36.370 7 0.704 0.704 38.133 0.000 0.000 LGA I 106 I 106 33.005 4 0.046 0.046 33.005 0.000 0.000 LGA L 107 L 107 32.540 4 0.242 0.242 33.079 0.000 0.000 LGA T 108 T 108 34.248 3 0.116 0.116 34.248 0.000 0.000 LGA Y 109 Y 109 34.055 8 0.053 0.053 35.432 0.000 0.000 LGA S 110 S 110 36.625 2 0.209 0.209 36.625 0.000 0.000 LGA F 111 F 111 36.655 7 0.059 0.059 37.152 0.000 0.000 LGA T 112 T 112 36.068 3 0.364 0.364 36.207 0.000 0.000 LGA E 113 E 113 33.719 5 0.629 0.629 35.490 0.000 0.000 LGA Y 114 Y 114 31.904 8 0.000 0.000 34.346 0.000 0.000 LGA K 115 K 115 33.875 5 0.026 0.026 37.546 0.000 0.000 LGA T 116 T 116 38.779 3 0.135 0.135 42.834 0.000 0.000 LGA N 117 N 117 41.695 4 0.234 0.234 45.978 0.000 0.000 LGA Q 118 Q 118 45.284 5 0.649 0.649 47.004 0.000 0.000 LGA P 119 P 119 49.277 3 0.635 0.635 50.417 0.000 0.000 LGA V 120 V 120 48.971 3 0.121 0.121 52.578 0.000 0.000 LGA A 121 A 121 53.141 1 0.627 0.627 55.530 0.000 0.000 LGA T 122 T 122 57.624 3 0.627 0.627 61.484 0.000 0.000 LGA E 123 E 123 60.784 5 0.625 0.625 63.426 0.000 0.000 LGA R 124 R 124 65.522 7 0.632 0.632 68.741 0.000 0.000 LGA F 125 F 125 68.515 7 0.327 0.327 70.149 0.000 0.000 LGA D 126 D 126 73.994 4 0.233 0.233 75.882 0.000 0.000 LGA A 127 A 127 78.155 1 0.257 0.257 78.155 0.000 0.000 LGA G 128 G 128 78.072 0 0.582 0.582 79.228 0.000 0.000 LGA S 129 S 129 76.124 2 0.610 0.610 76.438 0.000 0.000 LGA C 130 C 130 74.905 2 0.634 0.634 76.357 0.000 0.000 LGA R 131 R 131 76.613 7 0.595 0.595 76.613 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 94 376 376 100.00 731 376 51.44 105 SUMMARY(RMSD_GDC): 23.287 23.322 23.322 11.282 5.954 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 94 105 4.0 17 2.76 15.952 13.220 0.594 LGA_LOCAL RMSD: 2.764 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 33.507 Number of assigned atoms: 94 Std_ASGN_ATOMS RMSD: 23.287 Standard rmsd on all 94 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.029193 * X + -0.881012 * Y + -0.472192 * Z + -35.755329 Y_new = 0.700688 * X + -0.318862 * Y + 0.638251 * Z + -374.244476 Z_new = -0.712871 * X + -0.349492 * Y + 0.608006 * Z + 159.096069 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.529157 0.793583 -0.521696 [DEG: 87.6142 45.4690 -29.8910 ] ZXZ: -2.504637 0.917250 -2.026621 [DEG: -143.5052 52.5545 -116.1168 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0581AL396_1-D1 REMARK 2: T0581-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0581AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 94 105 4.0 17 2.76 13.220 23.29 REMARK ---------------------------------------------------------- MOLECULE T0581AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2w0c_T ATOM 105 N LEU 27 0.441 27.485 18.958 1.00 0.00 N ATOM 106 CA LEU 27 -0.051 28.605 18.149 1.00 0.00 C ATOM 107 C LEU 27 0.810 29.865 18.280 1.00 0.00 C ATOM 108 O LEU 27 0.646 30.804 17.499 1.00 0.00 O ATOM 109 N SER 28 1.707 29.892 19.266 1.00 0.00 N ATOM 110 CA SER 28 2.658 30.995 19.420 1.00 0.00 C ATOM 111 C SER 28 3.493 31.141 18.151 1.00 0.00 C ATOM 112 O SER 28 3.599 32.233 17.590 1.00 0.00 O ATOM 113 N GLU 32 4.079 30.030 17.713 1.00 0.00 N ATOM 114 CA GLU 32 4.718 29.954 16.403 1.00 0.00 C ATOM 115 C GLU 32 3.656 29.628 15.357 1.00 0.00 C ATOM 116 O GLU 32 2.548 29.212 15.700 1.00 0.00 O ATOM 117 N LYS 33 3.995 29.820 14.085 1.00 0.00 N ATOM 118 CA LYS 33 3.066 29.534 12.991 1.00 0.00 C ATOM 119 C LYS 33 2.788 28.035 12.896 1.00 0.00 C ATOM 120 O LYS 33 3.661 27.216 13.189 1.00 0.00 O ATOM 121 N VAL 34 1.567 27.686 12.493 1.00 0.00 N ATOM 122 CA VAL 34 1.163 26.287 12.359 1.00 0.00 C ATOM 123 C VAL 34 2.015 25.581 11.306 1.00 0.00 C ATOM 124 O VAL 34 2.017 25.972 10.138 1.00 0.00 O ATOM 125 N ALA 35 2.730 24.540 11.728 1.00 0.00 N ATOM 126 CA ALA 35 3.688 23.844 10.865 1.00 0.00 C ATOM 127 C ALA 35 3.059 22.761 9.980 1.00 0.00 C ATOM 128 O ALA 35 3.770 22.091 9.229 1.00 0.00 O ATOM 129 N LYS 36 1.740 22.589 10.068 1.00 0.00 N ATOM 130 CA LYS 36 1.035 21.591 9.262 1.00 0.00 C ATOM 131 C LYS 36 0.941 22.034 7.801 1.00 0.00 C ATOM 132 O LYS 36 0.369 23.083 7.502 1.00 0.00 O ATOM 133 N GLU 37 1.505 21.227 6.902 1.00 0.00 N ATOM 134 CA GLU 37 1.505 21.519 5.468 1.00 0.00 C ATOM 135 C GLU 37 0.688 20.473 4.713 1.00 0.00 C ATOM 136 O GLU 37 0.887 19.272 4.901 1.00 0.00 O ATOM 137 N SER 38 -0.224 20.939 3.860 1.00 0.00 N ATOM 138 CA SER 38 -1.104 20.059 3.087 1.00 0.00 C ATOM 139 C SER 38 -0.841 20.196 1.589 1.00 0.00 C ATOM 140 O SER 38 -1.575 20.891 0.880 1.00 0.00 O ATOM 141 N SER 39 0.208 19.520 1.119 1.00 0.00 N ATOM 142 CA SER 39 0.606 19.543 -0.293 1.00 0.00 C ATOM 143 C SER 39 1.946 18.830 -0.486 1.00 0.00 C ATOM 144 O SER 39 2.733 18.711 0.456 1.00 0.00 O ATOM 145 N VAL 40 2.193 18.361 -1.708 1.00 0.00 N ATOM 146 CA VAL 40 3.439 17.665 -2.045 1.00 0.00 C ATOM 147 C VAL 40 4.218 18.321 -3.194 1.00 0.00 C ATOM 148 O VAL 40 5.248 17.796 -3.621 1.00 0.00 O ATOM 149 N GLY 41 3.737 19.465 -3.684 1.00 0.00 N ATOM 150 CA GLY 41 4.353 20.139 -4.828 1.00 0.00 C ATOM 151 C GLY 41 5.543 20.993 -4.399 1.00 0.00 C ATOM 152 O GLY 41 6.648 20.837 -4.921 1.00 0.00 O ATOM 153 N THR 42 5.303 21.897 -3.452 1.00 0.00 N ATOM 154 CA THR 42 6.330 22.827 -2.980 1.00 0.00 C ATOM 155 C THR 42 7.411 22.138 -2.145 1.00 0.00 C ATOM 156 O THR 42 8.576 22.535 -2.188 1.00 0.00 O ATOM 157 N PRO 43 7.020 21.114 -1.389 1.00 0.00 N ATOM 158 CA PRO 43 7.950 20.377 -0.531 1.00 0.00 C ATOM 159 C PRO 43 8.988 19.595 -1.338 1.00 0.00 C ATOM 160 O PRO 43 10.158 19.535 -0.958 1.00 0.00 O ATOM 161 N ARG 44 8.551 18.998 -2.446 1.00 0.00 N ATOM 162 CA ARG 44 9.434 18.209 -3.306 1.00 0.00 C ATOM 163 C ARG 44 10.382 19.092 -4.120 1.00 0.00 C ATOM 164 O ARG 44 11.566 18.778 -4.256 1.00 0.00 O ATOM 165 N ALA 45 9.855 20.191 -4.657 1.00 0.00 N ATOM 166 CA ALA 45 10.634 21.103 -5.497 1.00 0.00 C ATOM 167 C ALA 45 11.670 21.894 -4.695 1.00 0.00 C ATOM 168 O ALA 45 12.797 22.088 -5.155 1.00 0.00 O ATOM 169 N ILE 46 11.281 22.351 -3.506 1.00 0.00 N ATOM 170 CA ILE 46 12.176 23.118 -2.635 1.00 0.00 C ATOM 171 C ILE 46 13.345 22.274 -2.128 1.00 0.00 C ATOM 172 O ILE 46 14.461 22.776 -1.984 1.00 0.00 O ATOM 173 N ASN 47 13.080 20.997 -1.855 1.00 0.00 N ATOM 174 CA ASN 47 14.119 20.059 -1.427 1.00 0.00 C ATOM 175 C ASN 47 15.114 19.779 -2.553 1.00 0.00 C ATOM 176 O ASN 47 16.314 19.641 -2.307 1.00 0.00 O ATOM 177 N GLU 48 14.608 19.692 -3.782 1.00 0.00 N ATOM 178 CA GLU 48 15.454 19.505 -4.962 1.00 0.00 C ATOM 179 C GLU 48 16.296 20.751 -5.244 1.00 0.00 C ATOM 180 O GLU 48 17.455 20.643 -5.649 1.00 0.00 O ATOM 181 N ASP 49 15.705 21.924 -5.031 1.00 0.00 N ATOM 182 CA ASP 49 16.408 23.197 -5.196 1.00 0.00 C ATOM 183 C ASP 49 17.456 23.419 -4.102 1.00 0.00 C ATOM 184 O ASP 49 18.460 24.095 -4.329 1.00 0.00 O ATOM 185 N ILE 50 17.212 22.854 -2.920 1.00 0.00 N ATOM 186 CA ILE 50 18.149 22.953 -1.798 1.00 0.00 C ATOM 187 C ILE 50 19.444 22.195 -2.081 1.00 0.00 C ATOM 188 O ILE 50 20.535 22.686 -1.785 1.00 0.00 O ATOM 189 N LEU 51 19.316 20.999 -2.653 1.00 0.00 N ATOM 190 CA LEU 51 20.474 20.187 -3.032 1.00 0.00 C ATOM 191 C LEU 51 21.217 20.775 -4.234 1.00 0.00 C ATOM 192 O LEU 51 22.425 20.578 -4.377 1.00 0.00 O ATOM 193 N ASP 52 20.492 21.492 -5.092 1.00 0.00 N ATOM 194 CA ASP 52 21.078 22.117 -6.280 1.00 0.00 C ATOM 195 C ASP 52 21.936 23.332 -5.925 1.00 0.00 C ATOM 196 O ASP 52 23.024 23.510 -6.476 1.00 0.00 O ATOM 197 N GLN 53 21.439 24.162 -5.010 1.00 0.00 N ATOM 198 CA GLN 53 22.148 25.373 -4.586 1.00 0.00 C ATOM 199 C GLN 53 23.406 25.064 -3.768 1.00 0.00 C ATOM 200 O GLN 53 24.356 25.850 -3.770 1.00 0.00 O ATOM 201 N GLY 54 23.397 23.927 -3.072 1.00 0.00 N ATOM 202 CA GLY 54 24.531 23.481 -2.256 1.00 0.00 C ATOM 203 C GLY 54 24.755 24.368 -1.028 1.00 0.00 C ATOM 204 O GLY 54 25.896 24.629 -0.639 1.00 0.00 O ATOM 205 N TYR 55 23.660 24.820 -0.419 1.00 0.00 N ATOM 206 CA TYR 55 23.722 25.591 0.820 1.00 0.00 C ATOM 207 C TYR 55 23.926 24.644 1.999 1.00 0.00 C ATOM 208 O TYR 55 23.393 23.532 2.007 1.00 0.00 O ATOM 209 N THR 56 24.692 25.089 2.991 1.00 0.00 N ATOM 210 CA THR 56 25.024 24.260 4.148 1.00 0.00 C ATOM 211 C THR 56 23.831 24.121 5.094 1.00 0.00 C ATOM 212 O THR 56 23.488 25.066 5.808 1.00 0.00 O ATOM 213 N GLY 59 23.212 22.940 5.089 1.00 0.00 N ATOM 214 CA GLY 59 22.074 22.628 5.959 1.00 0.00 C ATOM 215 C GLY 59 20.851 23.489 5.639 1.00 0.00 C ATOM 216 O GLY 59 20.682 24.577 6.193 1.00 0.00 O ATOM 217 N ASN 60 20.004 22.990 4.740 1.00 0.00 N ATOM 218 CA ASN 60 18.779 23.691 4.349 1.00 0.00 C ATOM 219 C ASN 60 17.799 23.814 5.516 1.00 0.00 C ATOM 220 O ASN 60 17.106 24.825 5.646 1.00 0.00 O ATOM 221 N GLN 61 17.747 22.783 6.358 1.00 0.00 N ATOM 222 CA GLN 61 16.901 22.791 7.551 1.00 0.00 C ATOM 223 C GLN 61 17.424 23.768 8.606 1.00 0.00 C ATOM 224 O GLN 61 16.639 24.435 9.281 1.00 0.00 O ATOM 225 N LEU 62 18.747 23.844 8.742 1.00 0.00 N ATOM 226 CA LEU 62 19.383 24.760 9.691 1.00 0.00 C ATOM 227 C LEU 62 19.241 26.217 9.248 1.00 0.00 C ATOM 228 O LEU 62 18.987 27.098 10.071 1.00 0.00 O ATOM 229 N ILE 63 19.410 26.460 7.949 1.00 0.00 N ATOM 230 CA ILE 63 19.264 27.800 7.381 1.00 0.00 C ATOM 231 C ILE 63 17.810 28.276 7.417 1.00 0.00 C ATOM 232 O ILE 63 17.549 29.465 7.607 1.00 0.00 O ATOM 233 N ASN 64 16.875 27.346 7.231 1.00 0.00 N ATOM 234 CA ASN 64 15.445 27.659 7.264 1.00 0.00 C ATOM 235 C ASN 64 14.977 28.031 8.671 1.00 0.00 C ATOM 236 O ASN 64 14.180 28.954 8.838 1.00 0.00 O ATOM 237 N HIS 65 15.473 27.307 9.673 1.00 0.00 N ATOM 238 CA HIS 65 15.123 27.568 11.072 1.00 0.00 C ATOM 239 C HIS 65 15.657 28.919 11.550 1.00 0.00 C ATOM 240 O HIS 65 14.979 29.631 12.292 1.00 0.00 O ATOM 241 N LEU 66 16.870 29.262 11.122 1.00 0.00 N ATOM 242 CA LEU 66 17.487 30.542 11.471 1.00 0.00 C ATOM 243 C LEU 66 16.823 31.708 10.738 1.00 0.00 C ATOM 244 O LEU 66 16.621 32.777 11.318 1.00 0.00 O ATOM 245 N SER 67 16.488 31.497 9.466 1.00 0.00 N ATOM 246 CA SER 67 15.873 32.536 8.637 1.00 0.00 C ATOM 247 C SER 67 14.411 32.794 9.002 1.00 0.00 C ATOM 248 O SER 67 13.956 33.937 8.972 1.00 0.00 O ATOM 249 N VAL 68 13.680 31.731 9.339 1.00 0.00 N ATOM 250 CA VAL 68 12.256 31.839 9.667 1.00 0.00 C ATOM 251 C VAL 68 12.009 32.665 10.930 1.00 0.00 C ATOM 252 O VAL 68 11.103 33.498 10.964 1.00 0.00 O ATOM 253 N ARG 69 12.817 32.426 11.960 1.00 0.00 N ATOM 254 CA ARG 69 12.692 33.143 13.231 1.00 0.00 C ATOM 255 C ARG 69 13.193 34.584 13.127 1.00 0.00 C ATOM 256 O ARG 69 12.581 35.499 13.680 1.00 0.00 O ATOM 257 N ALA 70 14.305 34.776 12.420 1.00 0.00 N ATOM 258 CA ALA 70 14.930 36.094 12.287 1.00 0.00 C ATOM 259 C ALA 70 14.143 37.021 11.358 1.00 0.00 C ATOM 260 O ALA 70 13.889 38.176 11.701 1.00 0.00 O ATOM 261 N SER 71 13.761 36.505 10.191 1.00 0.00 N ATOM 262 CA SER 71 13.064 37.301 9.174 1.00 0.00 C ATOM 263 C SER 71 11.539 37.326 9.345 1.00 0.00 C ATOM 264 O SER 71 10.834 37.890 8.503 1.00 0.00 O ATOM 265 N HIS 72 11.036 36.714 10.420 1.00 0.00 N ATOM 266 CA HIS 72 9.600 36.678 10.728 1.00 0.00 C ATOM 267 C HIS 72 8.872 35.589 9.940 1.00 0.00 C ATOM 268 O HIS 72 9.316 35.180 8.866 1.00 0.00 O ATOM 269 N ALA 73 7.748 35.131 10.487 1.00 0.00 N ATOM 270 CA ALA 73 6.982 34.026 9.906 1.00 0.00 C ATOM 271 C ALA 73 6.243 34.427 8.628 1.00 0.00 C ATOM 272 O ALA 73 6.158 33.638 7.686 1.00 0.00 O ATOM 273 N GLU 74 5.708 35.647 8.606 1.00 0.00 N ATOM 274 CA GLU 74 4.969 36.153 7.447 1.00 0.00 C ATOM 275 C GLU 74 5.870 36.290 6.219 1.00 0.00 C ATOM 276 O GLU 74 5.478 35.917 5.111 1.00 0.00 O ATOM 277 N ARG 75 7.069 36.827 6.426 1.00 0.00 N ATOM 278 CA ARG 75 8.055 36.969 5.355 1.00 0.00 C ATOM 279 C ARG 75 8.646 35.618 4.949 1.00 0.00 C ATOM 280 O ARG 75 8.964 35.403 3.778 1.00 0.00 O ATOM 281 N MET 76 8.791 34.717 5.919 1.00 0.00 N ATOM 282 CA MET 76 9.340 33.384 5.669 1.00 0.00 C ATOM 283 C MET 76 8.357 32.499 4.904 1.00 0.00 C ATOM 284 O MET 76 8.739 31.837 3.942 1.00 0.00 O ATOM 285 N ARG 77 7.098 32.494 5.338 1.00 0.00 N ATOM 286 CA ARG 77 6.060 31.662 4.721 1.00 0.00 C ATOM 287 C ARG 77 5.774 32.066 3.274 1.00 0.00 C ATOM 288 O ARG 77 5.567 31.205 2.416 1.00 0.00 O ATOM 289 N SER 78 5.759 33.371 3.013 1.00 0.00 N ATOM 290 CA SER 78 5.539 33.893 1.664 1.00 0.00 C ATOM 291 C SER 78 6.729 33.593 0.753 1.00 0.00 C ATOM 292 O SER 78 6.549 33.193 -0.399 1.00 0.00 O ATOM 293 N ASN 79 7.937 33.788 1.277 1.00 0.00 N ATOM 294 CA ASN 79 9.166 33.508 0.534 1.00 0.00 C ATOM 295 C ASN 79 9.408 32.007 0.364 1.00 0.00 C ATOM 296 O ASN 79 9.984 31.580 -0.636 1.00 0.00 O ATOM 297 N PRO 80 8.973 31.216 1.345 1.00 0.00 N ATOM 298 CA PRO 80 9.105 29.756 1.285 1.00 0.00 C ATOM 299 C PRO 80 8.149 29.140 0.265 1.00 0.00 C ATOM 300 O PRO 80 8.462 28.112 -0.340 1.00 0.00 O ATOM 301 N ASP 81 6.983 29.761 0.089 1.00 0.00 N ATOM 302 CA ASP 81 6.006 29.320 -0.910 1.00 0.00 C ATOM 303 C ASP 81 6.606 29.381 -2.312 1.00 0.00 C ATOM 304 O ASP 81 6.485 28.432 -3.088 1.00 0.00 O ATOM 305 N SER 82 7.249 30.505 -2.625 1.00 0.00 N ATOM 306 CA SER 82 8.008 30.642 -3.865 1.00 0.00 C ATOM 307 C SER 82 9.321 29.874 -3.728 1.00 0.00 C ATOM 308 O SER 82 10.326 30.420 -3.269 1.00 0.00 O ATOM 309 N VAL 83 9.296 28.603 -4.128 1.00 0.00 N ATOM 310 CA VAL 83 10.428 27.691 -3.942 1.00 0.00 C ATOM 311 C VAL 83 11.724 28.216 -4.557 1.00 0.00 C ATOM 312 O VAL 83 12.780 28.175 -3.922 1.00 0.00 O ATOM 313 N ARG 84 11.635 28.703 -5.792 1.00 0.00 N ATOM 314 CA ARG 84 12.787 29.257 -6.503 1.00 0.00 C ATOM 315 C ARG 84 12.413 30.558 -7.205 1.00 0.00 C ATOM 316 O ARG 84 11.248 30.965 -7.199 1.00 0.00 O ATOM 317 N SER 85 13.411 31.209 -7.800 1.00 0.00 N ATOM 318 CA SER 85 13.216 32.451 -8.553 1.00 0.00 C ATOM 319 C SER 85 12.893 33.645 -7.660 1.00 0.00 C ATOM 320 O SER 85 12.716 33.510 -6.448 1.00 0.00 O ATOM 321 N GLN 86 12.825 34.817 -8.285 1.00 0.00 N ATOM 322 CA GLN 86 12.482 36.056 -7.599 1.00 0.00 C ATOM 323 C GLN 86 12.212 37.150 -8.630 1.00 0.00 C ATOM 324 O GLN 86 13.140 37.636 -9.279 1.00 0.00 O ATOM 325 N LEU 87 10.943 37.527 -8.780 1.00 0.00 N ATOM 326 CA LEU 87 10.547 38.573 -9.723 1.00 0.00 C ATOM 327 C LEU 87 9.474 39.483 -9.127 1.00 0.00 C ATOM 328 O LEU 87 8.777 39.101 -8.185 1.00 0.00 O ATOM 329 N GLY 88 9.359 40.688 -9.685 1.00 0.00 N ATOM 330 CA GLY 88 8.348 41.666 -9.273 1.00 0.00 C ATOM 331 C GLY 88 8.611 42.215 -7.865 1.00 0.00 C ATOM 332 O GLY 88 9.733 42.134 -7.360 1.00 0.00 O ATOM 333 N SER 93 7.577 42.784 -7.245 1.00 0.00 N ATOM 334 CA SER 93 7.687 43.374 -5.907 1.00 0.00 C ATOM 335 C SER 93 7.961 42.337 -4.813 1.00 0.00 C ATOM 336 O SER 93 8.546 42.668 -3.780 1.00 0.00 O ATOM 337 N ASN 94 7.531 41.097 -5.038 1.00 0.00 N ATOM 338 CA ASN 94 7.777 40.004 -4.094 1.00 0.00 C ATOM 339 C ASN 94 9.270 39.706 -3.949 1.00 0.00 C ATOM 340 O ASN 94 9.743 39.390 -2.855 1.00 0.00 O ATOM 341 N THR 95 10.002 39.807 -5.056 1.00 0.00 N ATOM 342 CA THR 95 11.450 39.602 -5.058 1.00 0.00 C ATOM 343 C THR 95 12.187 40.776 -4.421 1.00 0.00 C ATOM 344 O THR 95 13.090 40.581 -3.608 1.00 0.00 O ATOM 345 N GLY 96 11.797 41.991 -4.805 1.00 0.00 N ATOM 346 CA GLY 96 12.446 43.211 -4.322 1.00 0.00 C ATOM 347 C GLY 96 12.303 43.389 -2.810 1.00 0.00 C ATOM 348 O GLY 96 13.244 43.821 -2.141 1.00 0.00 O ATOM 349 N TYR 97 11.126 43.059 -2.282 1.00 0.00 N ATOM 350 CA TYR 97 10.863 43.154 -0.846 1.00 0.00 C ATOM 351 C TYR 97 11.642 42.100 -0.058 1.00 0.00 C ATOM 352 O TYR 97 12.178 42.389 1.012 1.00 0.00 O ATOM 353 N ARG 98 11.698 40.883 -0.595 1.00 0.00 N ATOM 354 CA ARG 98 12.405 39.774 0.049 1.00 0.00 C ATOM 355 C ARG 98 13.924 39.939 -0.023 1.00 0.00 C ATOM 356 O ARG 98 14.635 39.567 0.913 1.00 0.00 O ATOM 357 N GLN 99 14.414 40.488 -1.134 1.00 0.00 N ATOM 358 CA GLN 99 15.849 40.706 -1.329 1.00 0.00 C ATOM 359 C GLN 99 16.399 41.748 -0.356 1.00 0.00 C ATOM 360 O GLN 99 17.458 41.546 0.242 1.00 0.00 O ATOM 361 N LEU 100 15.675 42.856 -0.206 1.00 0.00 N ATOM 362 CA LEU 100 16.061 43.931 0.708 1.00 0.00 C ATOM 363 C LEU 100 15.193 43.899 1.967 1.00 0.00 C ATOM 364 O LEU 100 14.497 44.869 2.279 1.00 0.00 O ATOM 365 N LEU 101 15.247 42.777 2.683 1.00 0.00 N ATOM 366 CA LEU 101 14.485 42.589 3.921 1.00 0.00 C ATOM 367 C LEU 101 15.422 42.477 5.122 1.00 0.00 C ATOM 368 O LEU 101 16.570 42.047 4.985 1.00 0.00 O ATOM 369 N ALA 102 14.924 42.859 6.296 1.00 0.00 N ATOM 370 CA ALA 102 15.719 42.831 7.527 1.00 0.00 C ATOM 371 C ALA 102 14.858 43.057 8.774 1.00 0.00 C ATOM 372 O ALA 102 13.633 43.175 8.682 1.00 0.00 O ATOM 373 N ARG 103 15.512 43.114 9.934 1.00 0.00 N ATOM 374 CA ARG 103 14.844 43.387 11.210 1.00 0.00 C ATOM 375 C ARG 103 14.673 44.895 11.414 1.00 0.00 C ATOM 376 O ARG 103 14.779 45.668 10.460 1.00 0.00 O ATOM 377 N ILE 106 14.404 45.314 12.652 1.00 0.00 N ATOM 378 CA ILE 106 14.209 46.736 12.948 1.00 0.00 C ATOM 379 C ILE 106 14.456 47.091 14.416 1.00 0.00 C ATOM 380 O ILE 106 14.198 46.289 15.316 1.00 0.00 O ATOM 381 N LEU 107 14.964 48.304 14.631 1.00 0.00 N ATOM 382 CA LEU 107 15.139 48.882 15.964 1.00 0.00 C ATOM 383 C LEU 107 14.454 50.250 15.995 1.00 0.00 C ATOM 384 O LEU 107 13.803 50.639 15.023 1.00 0.00 O ATOM 385 N THR 108 14.600 50.978 17.102 1.00 0.00 N ATOM 386 CA THR 108 13.974 52.297 17.231 1.00 0.00 C ATOM 387 C THR 108 14.600 53.160 18.327 1.00 0.00 C ATOM 388 O THR 108 15.223 52.647 19.258 1.00 0.00 O ATOM 389 N TYR 109 14.423 54.472 18.193 1.00 0.00 N ATOM 390 CA TYR 109 14.881 55.442 19.189 1.00 0.00 C ATOM 391 C TYR 109 13.948 56.652 19.203 1.00 0.00 C ATOM 392 O TYR 109 13.561 57.156 18.146 1.00 0.00 O ATOM 393 N SER 110 13.593 57.114 20.400 1.00 0.00 N ATOM 394 CA SER 110 12.686 58.254 20.555 1.00 0.00 C ATOM 395 C SER 110 12.710 58.807 21.980 1.00 0.00 C ATOM 396 O SER 110 13.135 58.124 22.913 1.00 0.00 O ATOM 397 N PHE 111 12.248 60.047 22.133 1.00 0.00 N ATOM 398 CA PHE 111 12.156 60.691 23.444 1.00 0.00 C ATOM 399 C PHE 111 10.853 60.286 24.130 1.00 0.00 C ATOM 400 O PHE 111 9.807 60.206 23.484 1.00 0.00 O ATOM 401 N THR 112 10.921 60.033 25.437 1.00 0.00 N ATOM 402 CA THR 112 9.742 59.615 26.200 1.00 0.00 C ATOM 403 C THR 112 9.897 59.843 27.710 1.00 0.00 C ATOM 404 O THR 112 9.770 60.974 28.180 1.00 0.00 O ATOM 405 N GLU 113 10.177 58.778 28.461 1.00 0.00 N ATOM 406 CA GLU 113 10.188 58.834 29.925 1.00 0.00 C ATOM 407 C GLU 113 11.439 59.508 30.490 1.00 0.00 C ATOM 408 O GLU 113 11.371 60.185 31.518 1.00 0.00 O ATOM 409 N TYR 114 12.574 59.315 29.823 1.00 0.00 N ATOM 410 CA TYR 114 13.854 59.855 30.289 1.00 0.00 C ATOM 411 C TYR 114 13.910 61.377 30.177 1.00 0.00 C ATOM 412 O TYR 114 14.274 62.063 31.135 1.00 0.00 O ATOM 413 N LYS 115 13.551 61.896 29.005 1.00 0.00 N ATOM 414 CA LYS 115 13.567 63.339 28.750 1.00 0.00 C ATOM 415 C LYS 115 12.483 64.076 29.538 1.00 0.00 C ATOM 416 O LYS 115 12.693 65.210 29.974 1.00 0.00 O ATOM 417 N THR 116 11.329 63.433 29.711 1.00 0.00 N ATOM 418 CA THR 116 10.222 64.010 30.475 1.00 0.00 C ATOM 419 C THR 116 10.556 64.118 31.964 1.00 0.00 C ATOM 420 O THR 116 10.181 65.091 32.619 1.00 0.00 O ATOM 421 N ASN 117 11.257 63.113 32.487 1.00 0.00 N ATOM 422 CA ASN 117 11.683 63.107 33.887 1.00 0.00 C ATOM 423 C ASN 117 12.759 64.161 34.157 1.00 0.00 C ATOM 424 O ASN 117 12.777 64.774 35.225 1.00 0.00 O ATOM 425 N GLN 118 13.649 64.360 33.186 1.00 0.00 N ATOM 426 CA GLN 118 14.706 65.369 33.290 1.00 0.00 C ATOM 427 C GLN 118 14.141 66.789 33.255 1.00 0.00 C ATOM 428 O GLN 118 14.661 67.684 33.923 1.00 0.00 O ATOM 429 N PRO 119 13.083 66.988 32.470 1.00 0.00 N ATOM 430 CA PRO 119 12.401 68.281 32.389 1.00 0.00 C ATOM 431 C PRO 119 11.708 68.636 33.705 1.00 0.00 C ATOM 432 O PRO 119 11.637 69.808 34.076 1.00 0.00 O ATOM 433 N VAL 120 11.195 67.620 34.397 1.00 0.00 N ATOM 434 CA VAL 120 10.578 67.803 35.713 1.00 0.00 C ATOM 435 C VAL 120 11.611 68.222 36.761 1.00 0.00 C ATOM 436 O VAL 120 11.301 68.998 37.666 1.00 0.00 O ATOM 437 N ALA 121 12.830 67.700 36.634 1.00 0.00 N ATOM 438 CA ALA 121 13.937 68.078 37.513 1.00 0.00 C ATOM 439 C ALA 121 14.348 69.533 37.292 1.00 0.00 C ATOM 440 O ALA 121 14.684 70.241 38.244 1.00 0.00 O ATOM 441 N THR 122 14.324 69.969 36.033 1.00 0.00 N ATOM 442 CA THR 122 14.608 71.362 35.683 1.00 0.00 C ATOM 443 C THR 122 13.490 72.288 36.157 1.00 0.00 C ATOM 444 O THR 122 13.753 73.402 36.616 1.00 0.00 O ATOM 445 N GLU 123 12.247 71.824 36.037 1.00 0.00 N ATOM 446 CA GLU 123 11.083 72.571 36.517 1.00 0.00 C ATOM 447 C GLU 123 11.063 72.649 38.044 1.00 0.00 C ATOM 448 O GLU 123 10.685 73.675 38.612 1.00 0.00 O ATOM 449 N ARG 124 11.465 71.559 38.697 1.00 0.00 N ATOM 450 CA ARG 124 11.584 71.523 40.154 1.00 0.00 C ATOM 451 C ARG 124 12.692 72.457 40.643 1.00 0.00 C ATOM 452 O ARG 124 12.579 73.052 41.717 1.00 0.00 O ATOM 453 N PHE 125 13.755 72.581 39.849 1.00 0.00 N ATOM 454 CA PHE 125 14.855 73.496 40.144 1.00 0.00 C ATOM 455 C PHE 125 14.635 74.837 39.443 1.00 0.00 C ATOM 456 O PHE 125 15.411 75.228 38.567 1.00 0.00 O ATOM 457 N ASP 126 13.564 75.527 39.833 1.00 0.00 N ATOM 458 CA ASP 126 13.251 76.863 39.324 1.00 0.00 C ATOM 459 C ASP 126 12.793 77.740 40.495 1.00 0.00 C ATOM 460 O ASP 126 11.839 77.375 41.181 1.00 0.00 O ATOM 461 N ALA 127 13.441 78.882 40.745 1.00 0.00 N ATOM 462 CA ALA 127 14.512 79.447 39.908 1.00 0.00 C ATOM 463 C ALA 127 15.870 78.740 40.034 1.00 0.00 C ATOM 464 O ALA 127 16.840 79.161 39.400 1.00 0.00 O ATOM 465 N GLY 128 15.939 77.694 40.858 1.00 0.00 N ATOM 466 CA GLY 128 17.099 76.794 40.933 1.00 0.00 C ATOM 467 C GLY 128 18.012 77.086 42.121 1.00 0.00 C ATOM 468 O GLY 128 18.060 78.211 42.624 1.00 0.00 O ATOM 469 N SER 129 18.727 76.050 42.557 1.00 0.00 N ATOM 470 CA SER 129 19.713 76.152 43.630 1.00 0.00 C ATOM 471 C SER 129 21.016 75.489 43.190 1.00 0.00 C ATOM 472 O SER 129 20.998 74.477 42.485 1.00 0.00 O ATOM 473 N CYS 130 22.142 76.058 43.613 1.00 0.00 N ATOM 474 CA CYS 130 23.459 75.591 43.183 1.00 0.00 C ATOM 475 C CYS 130 23.893 74.331 43.931 1.00 0.00 C ATOM 476 O CYS 130 23.917 74.309 45.163 1.00 0.00 O ATOM 477 N ARG 131 24.228 73.287 43.174 1.00 0.00 N ATOM 478 CA ARG 131 24.773 72.046 43.727 1.00 0.00 C ATOM 479 C ARG 131 26.025 71.665 42.943 1.00 0.00 C ATOM 480 O ARG 131 26.020 71.696 41.711 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 376 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 93.25 40.4 178 85.6 208 ARMSMC SECONDARY STRUCTURE . . 92.02 41.5 123 84.2 146 ARMSMC SURFACE . . . . . . . . 92.61 44.1 118 85.5 138 ARMSMC BURIED . . . . . . . . 94.49 33.3 60 85.7 70 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 90 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 83 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 66 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 61 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 62 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 45 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 44 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 20 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 18 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 23.29 (Number of atoms: 94) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 23.29 94 89.5 105 CRMSCA CRN = ALL/NP . . . . . 0.2477 CRMSCA SECONDARY STRUCTURE . . 20.96 64 87.7 73 CRMSCA SURFACE . . . . . . . . 24.58 63 90.0 70 CRMSCA BURIED . . . . . . . . 20.41 31 88.6 35 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 23.32 376 72.6 518 CRMSMC SECONDARY STRUCTURE . . 21.03 256 70.7 362 CRMSMC SURFACE . . . . . . . . 24.58 252 73.0 345 CRMSMC BURIED . . . . . . . . 20.53 124 71.7 173 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 388 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 326 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 279 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 257 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 131 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 23.32 376 46.5 808 CRMSALL SECONDARY STRUCTURE . . 21.03 256 44.8 571 CRMSALL SURFACE . . . . . . . . 24.58 252 46.9 537 CRMSALL BURIED . . . . . . . . 20.53 124 45.8 271 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 20.945 1.000 0.500 94 89.5 105 ERRCA SECONDARY STRUCTURE . . 19.221 1.000 0.500 64 87.7 73 ERRCA SURFACE . . . . . . . . 22.139 1.000 0.500 63 90.0 70 ERRCA BURIED . . . . . . . . 18.518 1.000 0.500 31 88.6 35 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 20.919 1.000 0.500 376 72.6 518 ERRMC SECONDARY STRUCTURE . . 19.221 1.000 0.500 256 70.7 362 ERRMC SURFACE . . . . . . . . 22.089 1.000 0.500 252 73.0 345 ERRMC BURIED . . . . . . . . 18.542 1.000 0.500 124 71.7 173 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 388 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 326 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 279 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 257 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 131 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 20.919 1.000 0.500 376 46.5 808 ERRALL SECONDARY STRUCTURE . . 19.221 1.000 0.500 256 44.8 571 ERRALL SURFACE . . . . . . . . 22.089 1.000 0.500 252 46.9 537 ERRALL BURIED . . . . . . . . 18.542 1.000 0.500 124 45.8 271 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 1 12 94 105 DISTCA CA (P) 0.00 0.00 0.00 0.95 11.43 105 DISTCA CA (RMS) 0.00 0.00 0.00 4.52 7.87 DISTCA ALL (N) 0 0 0 6 46 376 808 DISTALL ALL (P) 0.00 0.00 0.00 0.74 5.69 808 DISTALL ALL (RMS) 0.00 0.00 0.00 3.98 7.62 DISTALL END of the results output