####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 62 ( 248), selected 62 , name T0581AL285_1-D1 # Molecule2: number of CA atoms 105 ( 808), selected 62 , name T0581-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0581AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 62 - 87 4.92 16.18 LONGEST_CONTINUOUS_SEGMENT: 25 63 - 88 4.87 16.61 LCS_AVERAGE: 17.45 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 47 - 53 1.77 24.85 LCS_AVERAGE: 5.05 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 27 - 31 0.61 24.24 LONGEST_CONTINUOUS_SEGMENT: 5 48 - 52 0.84 25.64 LONGEST_CONTINUOUS_SEGMENT: 5 69 - 73 0.31 24.03 LONGEST_CONTINUOUS_SEGMENT: 5 77 - 81 0.70 18.25 LCS_AVERAGE: 3.78 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 62 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 27 L 27 5 6 13 4 5 5 6 8 8 9 10 11 11 11 11 11 13 15 18 19 19 20 22 LCS_GDT S 28 S 28 5 6 13 4 5 5 6 8 8 9 10 11 11 11 13 14 15 15 18 19 19 19 22 LCS_GDT K 29 K 29 5 6 13 4 5 5 6 8 8 9 10 11 11 11 13 14 15 15 18 19 19 21 21 LCS_GDT M 30 M 30 5 6 13 4 5 5 6 8 8 9 10 11 11 11 12 14 15 15 18 19 19 21 21 LCS_GDT L 31 L 31 5 6 13 3 5 5 6 8 8 9 10 11 11 11 12 14 15 15 18 19 19 21 21 LCS_GDT E 32 E 32 3 6 13 3 4 4 6 8 8 9 10 11 11 11 13 14 15 15 15 19 19 21 21 LCS_GDT S 38 S 38 3 5 13 0 3 3 4 5 5 7 10 11 12 14 14 15 16 17 17 18 20 21 21 LCS_GDT S 39 S 39 4 5 13 4 4 4 6 8 8 9 11 12 13 14 14 15 16 17 17 18 21 24 27 LCS_GDT V 40 V 40 4 5 13 4 4 4 5 8 8 10 11 12 13 14 14 15 16 17 17 18 21 24 27 LCS_GDT G 41 G 41 4 5 13 4 4 4 5 7 9 10 11 12 13 14 14 15 16 17 17 18 21 24 27 LCS_GDT T 42 T 42 4 6 13 4 4 4 5 7 9 10 11 12 13 14 14 15 16 17 17 18 21 24 27 LCS_GDT P 43 P 43 4 6 13 3 3 5 5 7 9 10 11 12 13 14 14 15 16 17 17 18 21 24 27 LCS_GDT R 44 R 44 4 6 13 3 3 5 5 7 9 10 11 12 13 14 14 15 16 18 22 25 30 33 35 LCS_GDT A 45 A 45 4 6 13 3 3 5 5 7 9 10 11 12 13 14 14 18 21 25 30 32 35 37 40 LCS_GDT I 46 I 46 4 6 13 3 3 5 5 6 9 10 11 15 16 18 21 23 26 28 31 33 35 37 40 LCS_GDT N 47 N 47 4 7 13 3 3 5 5 8 12 14 15 17 19 19 20 22 25 28 30 32 35 37 40 LCS_GDT E 48 E 48 5 7 13 3 4 5 6 6 7 10 15 16 17 19 20 20 22 26 28 29 31 33 35 LCS_GDT D 49 D 49 5 7 13 3 4 5 6 6 7 7 8 9 11 14 14 14 15 16 17 26 27 28 31 LCS_GDT I 50 I 50 5 7 13 3 4 5 6 6 7 7 9 11 13 13 15 16 17 17 23 28 29 35 37 LCS_GDT L 51 L 51 5 7 11 3 4 5 6 6 7 7 9 11 13 13 15 16 17 20 23 29 34 37 39 LCS_GDT D 52 D 52 5 7 12 0 3 5 6 6 7 7 8 9 11 12 15 19 23 26 30 32 34 37 40 LCS_GDT Q 53 Q 53 4 7 12 4 4 4 6 6 7 7 8 9 11 12 14 17 21 25 29 31 34 37 40 LCS_GDT G 54 G 54 4 6 12 4 4 4 4 5 6 7 8 10 11 14 20 21 25 28 31 33 35 37 40 LCS_GDT Y 55 Y 55 4 6 12 4 4 4 5 5 6 7 8 10 11 14 20 21 25 28 31 33 35 37 40 LCS_GDT T 56 T 56 4 6 12 4 4 4 5 5 6 8 10 12 14 17 21 23 26 28 31 33 35 37 40 LCS_GDT V 57 V 57 4 6 12 3 4 5 6 7 7 8 10 12 16 19 21 23 26 28 31 33 35 37 40 LCS_GDT E 58 E 58 4 6 12 3 4 4 5 6 6 7 8 9 9 12 20 23 25 28 31 33 35 36 39 LCS_GDT G 59 G 59 4 6 12 3 4 4 5 5 6 7 8 8 9 16 20 23 25 28 31 33 35 36 39 LCS_GDT N 60 N 60 4 6 12 3 4 4 5 5 6 6 8 8 9 10 14 19 21 23 28 32 35 37 40 LCS_GDT Q 61 Q 61 4 5 12 3 4 4 5 5 6 6 8 8 9 11 14 19 24 28 29 33 35 37 40 LCS_GDT L 62 L 62 3 5 25 3 3 4 4 5 6 6 8 8 13 19 21 23 26 28 31 33 35 37 40 LCS_GDT I 63 I 63 3 3 25 3 4 4 6 7 9 11 13 15 17 20 22 23 26 28 31 33 35 37 40 LCS_GDT N 64 N 64 3 3 25 3 3 4 6 7 9 11 13 15 17 20 22 23 26 28 31 33 35 37 40 LCS_GDT H 65 H 65 3 3 25 3 4 5 6 7 9 11 13 15 17 20 22 23 26 28 31 33 35 37 40 LCS_GDT L 66 L 66 3 3 25 3 3 5 6 9 12 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT S 67 S 67 3 3 25 3 4 5 6 9 12 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT V 68 V 68 3 4 25 3 3 4 6 9 12 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT R 69 R 69 5 5 25 5 5 5 5 7 11 13 15 17 19 19 22 23 26 28 31 33 35 37 40 LCS_GDT A 70 A 70 5 5 25 5 5 5 5 7 9 10 14 17 19 19 21 23 25 28 31 33 35 37 40 LCS_GDT S 71 S 71 5 5 25 5 5 5 5 5 9 10 12 15 19 19 21 21 24 28 31 33 35 36 39 LCS_GDT H 72 H 72 5 5 25 5 5 5 5 5 9 12 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT A 73 A 73 5 5 25 5 5 5 6 9 12 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT E 74 E 74 4 5 25 3 3 4 4 7 11 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT M 76 M 76 4 6 25 1 3 5 6 9 12 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT R 77 R 77 5 6 25 3 5 5 6 9 12 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT S 78 S 78 5 6 25 3 5 5 6 9 12 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT N 79 N 79 5 6 25 3 5 5 6 7 12 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT P 80 P 80 5 6 25 3 5 5 6 7 9 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT D 81 D 81 5 6 25 3 5 5 6 9 12 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT S 82 S 82 3 4 25 3 4 5 6 9 12 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT V 83 V 83 3 4 25 3 4 5 6 9 12 14 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT R 84 R 84 3 3 25 3 4 4 6 7 9 12 15 17 19 20 22 23 26 28 31 33 35 37 40 LCS_GDT S 85 S 85 3 3 25 3 3 3 3 4 6 9 12 15 17 20 22 23 26 28 31 33 35 37 40 LCS_GDT Q 86 Q 86 3 3 25 3 3 3 3 4 7 9 12 15 17 20 22 23 26 28 31 33 35 37 40 LCS_GDT L 87 L 87 3 5 25 3 3 5 5 6 7 8 10 15 17 19 22 23 26 28 31 33 35 37 40 LCS_GDT G 88 G 88 3 5 25 3 3 5 5 6 7 7 9 11 14 19 21 23 25 28 30 33 35 37 40 LCS_GDT D 89 D 89 3 5 24 3 3 3 4 6 7 8 9 11 13 14 16 19 24 27 29 32 35 37 40 LCS_GDT S 90 S 90 3 5 24 3 3 3 4 6 7 7 9 11 13 14 18 21 24 26 29 32 35 37 40 LCS_GDT V 91 V 91 3 5 24 3 3 3 4 6 7 9 12 13 15 18 21 21 25 27 30 32 35 37 40 LCS_GDT C 92 C 92 3 5 12 3 3 3 3 5 5 8 9 11 13 15 18 21 24 27 29 32 35 37 40 LCS_GDT S 93 S 93 3 5 12 3 3 3 3 5 5 8 9 11 11 11 14 15 17 19 25 28 29 32 33 LCS_GDT N 94 N 94 3 5 12 3 3 3 3 5 5 8 9 11 12 15 17 20 24 25 28 30 31 33 35 LCS_AVERAGE LCS_A: 8.76 ( 3.78 5.05 17.45 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 5 5 6 9 12 14 15 17 19 20 22 23 26 28 31 33 35 37 40 GDT PERCENT_AT 4.76 4.76 4.76 5.71 8.57 11.43 13.33 14.29 16.19 18.10 19.05 20.95 21.90 24.76 26.67 29.52 31.43 33.33 35.24 38.10 GDT RMS_LOCAL 0.31 0.31 0.31 1.08 1.88 2.25 2.51 2.61 3.11 3.49 4.01 4.29 4.67 5.05 5.31 5.74 5.96 6.18 6.66 7.02 GDT RMS_ALL_AT 24.03 24.03 24.03 23.52 17.14 17.71 17.92 18.13 18.21 17.96 16.10 16.27 15.47 15.16 15.26 15.06 14.96 14.98 14.92 14.75 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 27 L 27 37.271 4 0.046 0.046 39.210 0.000 0.000 LGA S 28 S 28 37.689 2 0.253 0.253 37.937 0.000 0.000 LGA K 29 K 29 38.630 5 0.153 0.153 38.630 0.000 0.000 LGA M 30 M 30 34.331 4 0.128 0.128 36.150 0.000 0.000 LGA L 31 L 31 30.631 4 0.592 0.592 32.396 0.000 0.000 LGA E 32 E 32 33.675 5 0.628 0.628 33.675 0.000 0.000 LGA S 38 S 38 28.061 2 0.671 0.671 29.198 0.000 0.000 LGA S 39 S 39 29.329 2 0.622 0.622 31.131 0.000 0.000 LGA V 40 V 40 32.467 3 0.039 0.039 32.467 0.000 0.000 LGA G 41 G 41 32.655 0 0.122 0.122 33.067 0.000 0.000 LGA T 42 T 42 29.100 3 0.583 0.583 30.544 0.000 0.000 LGA P 43 P 43 24.747 3 0.084 0.084 27.416 0.000 0.000 LGA R 44 R 44 19.430 7 0.104 0.104 20.975 0.000 0.000 LGA A 45 A 45 12.931 1 0.058 0.058 15.484 0.000 0.000 LGA I 46 I 46 6.567 4 0.600 0.600 8.662 22.619 11.310 LGA N 47 N 47 2.222 4 0.127 0.127 3.146 59.167 29.583 LGA E 48 E 48 6.041 5 0.343 0.343 8.136 15.119 6.720 LGA D 49 D 49 10.782 4 0.351 0.351 11.526 0.714 0.357 LGA I 50 I 50 11.355 4 0.088 0.088 11.355 0.714 0.357 LGA L 51 L 51 10.768 4 0.664 0.664 14.323 0.000 0.000 LGA D 52 D 52 14.171 4 0.051 0.051 14.821 0.000 0.000 LGA Q 53 Q 53 18.373 5 0.187 0.187 19.411 0.000 0.000 LGA G 54 G 54 18.087 0 0.109 0.109 18.885 0.000 0.000 LGA Y 55 Y 55 19.928 8 0.128 0.128 19.928 0.000 0.000 LGA T 56 T 56 19.229 3 0.195 0.195 20.143 0.000 0.000 LGA V 57 V 57 19.699 3 0.117 0.117 21.149 0.000 0.000 LGA E 58 E 58 22.314 5 0.586 0.586 22.314 0.000 0.000 LGA G 59 G 59 21.218 0 0.439 0.439 21.670 0.000 0.000 LGA N 60 N 60 21.520 4 0.191 0.191 21.561 0.000 0.000 LGA Q 61 Q 61 20.562 5 0.594 0.594 20.968 0.000 0.000 LGA L 62 L 62 14.457 4 0.612 0.612 16.549 0.000 0.000 LGA I 63 I 63 10.722 4 0.610 0.610 11.980 0.000 0.000 LGA N 64 N 64 11.314 4 0.444 0.444 12.282 0.000 0.000 LGA H 65 H 65 8.927 6 0.610 0.610 9.127 6.190 2.476 LGA L 66 L 66 3.066 4 0.672 0.672 4.777 50.833 25.417 LGA S 67 S 67 1.118 2 0.617 0.617 4.332 66.190 44.127 LGA V 68 V 68 2.966 3 0.592 0.592 2.966 73.452 41.973 LGA R 69 R 69 3.538 7 0.606 0.606 3.964 54.167 19.697 LGA A 70 A 70 6.521 1 0.025 0.025 6.521 18.333 14.667 LGA S 71 S 71 8.566 2 0.107 0.107 8.566 6.190 4.127 LGA H 72 H 72 5.814 6 0.126 0.126 6.104 22.857 9.143 LGA A 73 A 73 2.404 1 0.382 0.382 3.180 67.500 54.000 LGA E 74 E 74 3.442 5 0.167 0.167 3.825 54.048 24.021 LGA M 76 M 76 2.040 4 0.379 0.379 2.572 67.024 33.512 LGA R 77 R 77 1.551 7 0.622 0.622 1.885 81.667 29.697 LGA S 78 S 78 2.887 2 0.175 0.175 3.150 61.190 40.794 LGA N 79 N 79 2.712 4 0.339 0.339 3.987 53.690 26.845 LGA P 80 P 80 3.394 3 0.639 0.639 3.394 57.262 32.721 LGA D 81 D 81 1.770 4 0.025 0.025 2.523 80.119 40.060 LGA S 82 S 82 2.445 2 0.594 0.594 2.445 72.976 48.651 LGA V 83 V 83 2.116 3 0.626 0.626 2.832 62.976 35.986 LGA R 84 R 84 6.363 7 0.598 0.598 7.803 15.119 5.498 LGA S 85 S 85 9.931 2 0.608 0.608 9.931 2.381 1.587 LGA Q 86 Q 86 8.825 5 0.581 0.581 9.321 1.786 0.794 LGA L 87 L 87 9.695 4 0.439 0.439 10.845 0.476 0.238 LGA G 88 G 88 14.046 0 0.366 0.366 14.046 0.000 0.000 LGA D 89 D 89 15.617 4 0.233 0.233 15.617 0.000 0.000 LGA S 90 S 90 13.013 2 0.556 0.556 13.732 0.000 0.000 LGA V 91 V 91 10.126 3 0.532 0.532 12.126 0.000 0.000 LGA C 92 C 92 16.480 2 0.680 0.680 18.098 0.000 0.000 LGA S 93 S 93 20.072 2 0.419 0.419 20.072 0.000 0.000 LGA N 94 N 94 16.443 4 0.642 0.642 17.508 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 62 248 248 100.00 468 248 52.99 105 SUMMARY(RMSD_GDC): 13.102 12.850 12.850 10.236 5.565 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 62 105 4.0 15 2.61 13.571 11.522 0.554 LGA_LOCAL RMSD: 2.606 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 18.127 Number of assigned atoms: 62 Std_ASGN_ATOMS RMSD: 13.102 Standard rmsd on all 62 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.328459 * X + -0.686904 * Y + -0.648288 * Z + 29.774618 Y_new = 0.898579 * X + 0.015802 * Y + 0.438528 * Z + 18.797678 Z_new = -0.290982 * X + -0.726576 * Y + 0.622428 * Z + 10.672183 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.220352 0.295253 -0.862449 [DEG: 69.9210 16.9168 -49.4147 ] ZXZ: -2.165534 0.898955 -2.760669 [DEG: -124.0760 51.5063 -158.1747 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0581AL285_1-D1 REMARK 2: T0581-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0581AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 62 105 4.0 15 2.61 11.522 13.10 REMARK ---------------------------------------------------------- MOLECULE T0581AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1rw4A ATOM 105 N LEU 27 10.539 40.297 13.993 1.00 0.00 N ATOM 106 CA LEU 27 10.512 40.206 12.551 1.00 0.00 C ATOM 107 C LEU 27 10.381 41.517 11.839 1.00 0.00 C ATOM 108 O LEU 27 11.165 41.767 10.938 1.00 0.00 O ATOM 109 N SER 28 9.426 42.358 12.216 1.00 0.00 N ATOM 110 CA SER 28 9.270 43.647 11.563 1.00 0.00 C ATOM 111 C SER 28 10.310 44.707 11.891 1.00 0.00 C ATOM 112 O SER 28 10.282 45.851 11.447 1.00 0.00 O ATOM 113 N LYS 29 11.281 44.276 12.666 1.00 0.00 N ATOM 114 CA LYS 29 12.433 45.082 12.960 1.00 0.00 C ATOM 115 C LYS 29 13.500 44.851 11.904 1.00 0.00 C ATOM 116 O LYS 29 14.486 45.579 11.860 1.00 0.00 O ATOM 117 N MET 30 13.303 43.841 11.037 1.00 0.00 N ATOM 118 CA MET 30 14.265 43.441 10.006 1.00 0.00 C ATOM 119 C MET 30 13.672 43.113 8.634 1.00 0.00 C ATOM 120 O MET 30 14.384 43.184 7.636 1.00 0.00 O ATOM 121 N LEU 31 12.397 42.763 8.511 1.00 0.00 N ATOM 122 CA LEU 31 11.831 42.376 7.227 1.00 0.00 C ATOM 123 C LEU 31 10.894 43.451 6.733 1.00 0.00 C ATOM 124 O LEU 31 9.740 43.498 7.154 1.00 0.00 O ATOM 125 N GLU 32 11.370 44.320 5.838 1.00 0.00 N ATOM 126 CA GLU 32 10.544 45.415 5.371 1.00 0.00 C ATOM 127 C GLU 32 10.081 45.252 3.942 1.00 0.00 C ATOM 128 O GLU 32 10.862 44.731 3.170 1.00 0.00 O ATOM 129 N SER 38 8.874 45.674 3.532 1.00 0.00 N ATOM 130 CA SER 38 8.379 45.515 2.154 1.00 0.00 C ATOM 131 C SER 38 8.720 46.671 1.231 1.00 0.00 C ATOM 132 O SER 38 8.931 47.785 1.689 1.00 0.00 O ATOM 133 N SER 39 8.778 46.449 -0.074 1.00 0.00 N ATOM 134 CA SER 39 9.178 47.480 -1.007 1.00 0.00 C ATOM 135 C SER 39 8.428 47.360 -2.319 1.00 0.00 C ATOM 136 O SER 39 7.245 47.010 -2.305 1.00 0.00 O ATOM 137 N VAL 40 9.082 47.620 -3.465 1.00 0.00 N ATOM 138 CA VAL 40 8.399 47.605 -4.756 1.00 0.00 C ATOM 139 C VAL 40 7.654 46.293 -4.939 1.00 0.00 C ATOM 140 O VAL 40 8.159 45.245 -4.536 1.00 0.00 O ATOM 141 N GLY 41 6.428 46.426 -5.471 1.00 0.00 N ATOM 142 CA GLY 41 5.583 45.301 -5.812 1.00 0.00 C ATOM 143 C GLY 41 5.292 44.389 -4.634 1.00 0.00 C ATOM 144 O GLY 41 4.933 43.229 -4.819 1.00 0.00 O ATOM 145 N THR 42 5.460 44.890 -3.412 1.00 0.00 N ATOM 146 CA THR 42 5.268 44.088 -2.225 1.00 0.00 C ATOM 147 C THR 42 6.347 43.050 -1.963 1.00 0.00 C ATOM 148 O THR 42 6.069 42.012 -1.361 1.00 0.00 O ATOM 149 N PRO 43 7.579 43.284 -2.414 1.00 0.00 N ATOM 150 CA PRO 43 8.665 42.341 -2.212 1.00 0.00 C ATOM 151 C PRO 43 9.152 42.580 -0.801 1.00 0.00 C ATOM 152 O PRO 43 9.268 43.727 -0.375 1.00 0.00 O ATOM 153 N ARG 44 9.424 41.498 -0.071 1.00 0.00 N ATOM 154 CA ARG 44 9.849 41.595 1.319 1.00 0.00 C ATOM 155 C ARG 44 11.345 41.479 1.429 1.00 0.00 C ATOM 156 O ARG 44 11.936 40.537 0.925 1.00 0.00 O ATOM 157 N ALA 45 11.959 42.408 2.149 1.00 0.00 N ATOM 158 CA ALA 45 13.412 42.523 2.239 1.00 0.00 C ATOM 159 C ALA 45 14.038 42.305 3.605 1.00 0.00 C ATOM 160 O ALA 45 13.609 42.889 4.596 1.00 0.00 O ATOM 161 N ILE 46 15.084 41.474 3.624 1.00 0.00 N ATOM 162 CA ILE 46 15.860 41.166 4.820 1.00 0.00 C ATOM 163 C ILE 46 17.332 41.379 4.508 1.00 0.00 C ATOM 164 O ILE 46 17.812 41.002 3.449 1.00 0.00 O ATOM 165 N ASN 47 18.061 41.970 5.434 1.00 0.00 N ATOM 166 CA ASN 47 19.508 41.989 5.393 1.00 0.00 C ATOM 167 C ASN 47 20.077 41.204 6.567 1.00 0.00 C ATOM 168 O ASN 47 19.419 41.066 7.598 1.00 0.00 O ATOM 169 N GLU 48 21.298 40.670 6.440 1.00 0.00 N ATOM 170 CA GLU 48 21.887 39.854 7.490 1.00 0.00 C ATOM 171 C GLU 48 23.380 40.179 7.589 1.00 0.00 C ATOM 172 O GLU 48 23.800 41.059 8.337 1.00 0.00 O ATOM 173 N ASP 49 24.182 39.434 6.803 1.00 0.00 N ATOM 174 CA ASP 49 25.627 39.534 6.612 1.00 0.00 C ATOM 175 C ASP 49 26.611 39.852 7.724 1.00 0.00 C ATOM 176 O ASP 49 26.989 39.031 8.560 1.00 0.00 O ATOM 177 N ILE 50 27.022 41.116 7.585 1.00 0.00 N ATOM 178 CA ILE 50 28.091 41.751 8.336 1.00 0.00 C ATOM 179 C ILE 50 27.980 41.882 9.852 1.00 0.00 C ATOM 180 O ILE 50 27.033 42.438 10.418 1.00 0.00 O ATOM 181 N LEU 51 29.041 41.409 10.522 1.00 0.00 N ATOM 182 CA LEU 51 29.472 41.873 11.829 1.00 0.00 C ATOM 183 C LEU 51 29.620 43.382 11.978 1.00 0.00 C ATOM 184 O LEU 51 29.452 43.882 13.092 1.00 0.00 O ATOM 185 N ASP 52 29.900 44.092 10.867 1.00 0.00 N ATOM 186 CA ASP 52 30.065 45.547 10.823 1.00 0.00 C ATOM 187 C ASP 52 28.972 46.322 11.563 1.00 0.00 C ATOM 188 O ASP 52 27.798 46.225 11.174 1.00 0.00 O ATOM 189 N GLN 53 29.297 47.103 12.624 1.00 0.00 N ATOM 190 CA GLN 53 30.656 47.405 13.119 1.00 0.00 C ATOM 191 C GLN 53 31.513 46.395 13.883 1.00 0.00 C ATOM 192 O GLN 53 32.735 46.506 13.786 1.00 0.00 O ATOM 193 N GLY 54 30.973 45.423 14.639 1.00 0.00 N ATOM 194 CA GLY 54 31.773 44.438 15.370 1.00 0.00 C ATOM 195 C GLY 54 32.714 43.540 14.541 1.00 0.00 C ATOM 196 O GLY 54 32.726 43.561 13.308 1.00 0.00 O ATOM 197 N TYR 55 33.536 42.736 15.240 1.00 0.00 N ATOM 198 CA TYR 55 34.508 41.800 14.633 1.00 0.00 C ATOM 199 C TYR 55 33.961 40.394 14.260 1.00 0.00 C ATOM 200 O TYR 55 32.762 40.120 14.407 1.00 0.00 O ATOM 201 N THR 56 34.819 39.488 13.740 1.00 0.00 N ATOM 202 CA THR 56 34.455 38.105 13.396 1.00 0.00 C ATOM 203 C THR 56 34.386 37.808 11.900 1.00 0.00 C ATOM 204 O THR 56 35.193 38.282 11.099 1.00 0.00 O ATOM 205 N VAL 57 33.427 36.955 11.530 1.00 0.00 N ATOM 206 CA VAL 57 33.135 36.665 10.130 1.00 0.00 C ATOM 207 C VAL 57 31.653 36.953 9.856 1.00 0.00 C ATOM 208 O VAL 57 30.831 37.144 10.758 1.00 0.00 O ATOM 209 N GLU 58 31.306 37.061 8.574 1.00 0.00 N ATOM 210 CA GLU 58 29.934 37.302 8.146 1.00 0.00 C ATOM 211 C GLU 58 29.235 36.054 7.600 1.00 0.00 C ATOM 212 O GLU 58 28.014 36.045 7.417 1.00 0.00 O ATOM 213 N GLY 59 30.005 34.984 7.347 1.00 0.00 N ATOM 214 CA GLY 59 29.492 33.706 6.866 1.00 0.00 C ATOM 215 C GLY 59 28.600 32.998 7.862 1.00 0.00 C ATOM 216 O GLY 59 27.629 32.357 7.477 1.00 0.00 O ATOM 217 N ASN 60 28.967 33.113 9.144 1.00 0.00 N ATOM 218 CA ASN 60 28.203 32.557 10.254 1.00 0.00 C ATOM 219 C ASN 60 26.967 33.398 10.532 1.00 0.00 C ATOM 220 O ASN 60 25.935 32.905 10.983 1.00 0.00 O ATOM 221 N GLN 61 27.084 34.691 10.217 1.00 0.00 N ATOM 222 CA GLN 61 26.014 35.661 10.362 1.00 0.00 C ATOM 223 C GLN 61 24.838 35.430 9.432 1.00 0.00 C ATOM 224 O GLN 61 23.840 36.138 9.478 1.00 0.00 O ATOM 225 N LEU 62 24.983 34.446 8.557 1.00 0.00 N ATOM 226 CA LEU 62 23.965 34.045 7.613 1.00 0.00 C ATOM 227 C LEU 62 23.163 32.942 8.277 1.00 0.00 C ATOM 228 O LEU 62 21.975 32.768 8.015 1.00 0.00 O ATOM 229 N ILE 63 23.839 32.169 9.127 1.00 0.00 N ATOM 230 CA ILE 63 23.182 31.072 9.795 1.00 0.00 C ATOM 231 C ILE 63 22.440 31.649 10.956 1.00 0.00 C ATOM 232 O ILE 63 21.294 31.257 11.117 1.00 0.00 O ATOM 233 N ASN 64 23.022 32.605 11.700 1.00 0.00 N ATOM 234 CA ASN 64 22.325 33.294 12.792 1.00 0.00 C ATOM 235 C ASN 64 21.439 34.459 12.302 1.00 0.00 C ATOM 236 O ASN 64 21.347 35.548 12.882 1.00 0.00 O ATOM 237 N HIS 65 20.703 34.157 11.226 1.00 0.00 N ATOM 238 CA HIS 65 19.853 35.103 10.533 1.00 0.00 C ATOM 239 C HIS 65 18.716 34.421 9.790 1.00 0.00 C ATOM 240 O HIS 65 17.569 34.833 9.948 1.00 0.00 O ATOM 241 N LEU 66 18.977 33.409 8.940 1.00 0.00 N ATOM 242 CA LEU 66 17.873 32.698 8.299 1.00 0.00 C ATOM 243 C LEU 66 17.267 31.740 9.336 1.00 0.00 C ATOM 244 O LEU 66 16.153 31.252 9.139 1.00 0.00 O ATOM 245 N SER 67 17.990 31.461 10.444 1.00 0.00 N ATOM 246 CA SER 67 17.452 30.695 11.555 1.00 0.00 C ATOM 247 C SER 67 16.472 31.567 12.286 1.00 0.00 C ATOM 248 O SER 67 15.402 31.079 12.646 1.00 0.00 O ATOM 249 N VAL 68 16.824 32.853 12.463 1.00 0.00 N ATOM 250 CA VAL 68 15.910 33.836 13.030 1.00 0.00 C ATOM 251 C VAL 68 14.626 33.825 12.215 1.00 0.00 C ATOM 252 O VAL 68 13.545 33.699 12.776 1.00 0.00 O ATOM 253 N ARG 69 14.769 33.898 10.888 1.00 0.00 N ATOM 254 CA ARG 69 13.654 33.956 9.968 1.00 0.00 C ATOM 255 C ARG 69 12.746 32.762 9.988 1.00 0.00 C ATOM 256 O ARG 69 11.537 32.961 9.917 1.00 0.00 O ATOM 257 N ALA 70 13.309 31.552 10.116 1.00 0.00 N ATOM 258 CA ALA 70 12.507 30.333 10.168 1.00 0.00 C ATOM 259 C ALA 70 11.663 30.254 11.422 1.00 0.00 C ATOM 260 O ALA 70 10.457 30.003 11.366 1.00 0.00 O ATOM 261 N SER 71 12.341 30.528 12.547 1.00 0.00 N ATOM 262 CA SER 71 11.730 30.532 13.868 1.00 0.00 C ATOM 263 C SER 71 10.760 31.675 14.041 1.00 0.00 C ATOM 264 O SER 71 9.858 31.585 14.862 1.00 0.00 O ATOM 265 N HIS 72 10.924 32.726 13.242 1.00 0.00 N ATOM 266 CA HIS 72 10.048 33.881 13.235 1.00 0.00 C ATOM 267 C HIS 72 8.867 33.761 12.300 1.00 0.00 C ATOM 268 O HIS 72 7.973 34.595 12.358 1.00 0.00 O ATOM 269 N ALA 73 8.900 32.783 11.389 1.00 0.00 N ATOM 270 CA ALA 73 7.804 32.505 10.462 1.00 0.00 C ATOM 271 C ALA 73 7.666 33.385 9.211 1.00 0.00 C ATOM 272 O ALA 73 6.535 33.687 8.802 1.00 0.00 O ATOM 273 N GLU 74 8.762 33.783 8.547 1.00 0.00 N ATOM 274 CA GLU 74 8.663 34.619 7.359 1.00 0.00 C ATOM 275 C GLU 74 8.419 33.863 6.062 1.00 0.00 C ATOM 276 O GLU 74 8.117 34.497 5.055 1.00 0.00 O ATOM 277 N MET 76 8.512 32.523 6.083 1.00 0.00 N ATOM 278 CA MET 76 8.322 31.672 4.909 1.00 0.00 C ATOM 279 C MET 76 6.885 31.231 4.578 1.00 0.00 C ATOM 280 O MET 76 6.651 30.185 3.947 1.00 0.00 O ATOM 281 N ARG 77 5.919 32.088 4.962 1.00 0.00 N ATOM 282 CA ARG 77 4.469 31.906 4.773 1.00 0.00 C ATOM 283 C ARG 77 3.969 31.370 3.424 1.00 0.00 C ATOM 284 O ARG 77 4.611 31.486 2.371 1.00 0.00 O ATOM 285 N SER 78 2.756 30.811 3.531 1.00 0.00 N ATOM 286 CA SER 78 2.049 30.134 2.446 1.00 0.00 C ATOM 287 C SER 78 2.069 30.695 1.025 1.00 0.00 C ATOM 288 O SER 78 2.390 29.920 0.109 1.00 0.00 O ATOM 289 N ASN 79 1.793 31.990 0.769 1.00 0.00 N ATOM 290 CA ASN 79 1.747 32.379 -0.621 1.00 0.00 C ATOM 291 C ASN 79 3.025 32.901 -1.235 1.00 0.00 C ATOM 292 O ASN 79 3.013 33.345 -2.381 1.00 0.00 O ATOM 293 N PRO 80 4.142 32.759 -0.504 1.00 0.00 N ATOM 294 CA PRO 80 5.472 33.111 -0.993 1.00 0.00 C ATOM 295 C PRO 80 5.810 32.113 -2.105 1.00 0.00 C ATOM 296 O PRO 80 5.775 30.900 -1.943 1.00 0.00 O ATOM 297 N ASP 81 6.037 32.658 -3.292 1.00 0.00 N ATOM 298 CA ASP 81 6.343 31.923 -4.499 1.00 0.00 C ATOM 299 C ASP 81 7.830 31.669 -4.622 1.00 0.00 C ATOM 300 O ASP 81 8.266 30.636 -5.131 1.00 0.00 O ATOM 301 N SER 82 8.608 32.653 -4.172 1.00 0.00 N ATOM 302 CA SER 82 10.047 32.643 -4.298 1.00 0.00 C ATOM 303 C SER 82 10.759 33.256 -3.130 1.00 0.00 C ATOM 304 O SER 82 10.349 34.296 -2.629 1.00 0.00 O ATOM 305 N VAL 83 11.834 32.611 -2.702 1.00 0.00 N ATOM 306 CA VAL 83 12.729 33.220 -1.736 1.00 0.00 C ATOM 307 C VAL 83 14.048 33.296 -2.483 1.00 0.00 C ATOM 308 O VAL 83 14.475 32.336 -3.128 1.00 0.00 O ATOM 309 N ARG 84 14.668 34.479 -2.454 1.00 0.00 N ATOM 310 CA ARG 84 15.951 34.675 -3.102 1.00 0.00 C ATOM 311 C ARG 84 16.993 35.019 -2.078 1.00 0.00 C ATOM 312 O ARG 84 16.777 35.842 -1.199 1.00 0.00 O ATOM 313 N SER 85 18.117 34.320 -2.195 1.00 0.00 N ATOM 314 CA SER 85 19.261 34.526 -1.342 1.00 0.00 C ATOM 315 C SER 85 20.369 35.190 -2.121 1.00 0.00 C ATOM 316 O SER 85 20.890 34.579 -3.042 1.00 0.00 O ATOM 317 N GLN 86 20.745 36.432 -1.852 1.00 0.00 N ATOM 318 CA GLN 86 21.850 36.995 -2.583 1.00 0.00 C ATOM 319 C GLN 86 23.120 36.735 -1.794 1.00 0.00 C ATOM 320 O GLN 86 23.489 37.508 -0.915 1.00 0.00 O ATOM 321 N LEU 87 23.824 35.640 -2.084 1.00 0.00 N ATOM 322 CA LEU 87 25.009 35.269 -1.309 1.00 0.00 C ATOM 323 C LEU 87 26.324 35.643 -2.010 1.00 0.00 C ATOM 324 O LEU 87 26.342 36.732 -2.573 1.00 0.00 O ATOM 325 N GLY 88 27.443 34.869 -2.061 1.00 0.00 N ATOM 326 CA GLY 88 28.675 35.294 -2.738 1.00 0.00 C ATOM 327 C GLY 88 29.449 34.275 -3.593 1.00 0.00 C ATOM 328 O GLY 88 28.914 33.542 -4.425 1.00 0.00 O ATOM 329 N ASP 89 30.775 34.278 -3.385 1.00 0.00 N ATOM 330 CA ASP 89 31.763 33.466 -4.108 1.00 0.00 C ATOM 331 C ASP 89 31.860 31.974 -3.836 1.00 0.00 C ATOM 332 O ASP 89 32.594 31.301 -4.565 1.00 0.00 O ATOM 333 N SER 90 31.238 31.406 -2.793 1.00 0.00 N ATOM 334 CA SER 90 31.379 29.973 -2.573 1.00 0.00 C ATOM 335 C SER 90 30.081 29.345 -2.069 1.00 0.00 C ATOM 336 O SER 90 29.227 30.011 -1.472 1.00 0.00 O ATOM 337 N VAL 91 30.056 28.020 -2.249 1.00 0.00 N ATOM 338 CA VAL 91 28.994 27.172 -1.729 1.00 0.00 C ATOM 339 C VAL 91 29.656 26.245 -0.686 1.00 0.00 C ATOM 340 O VAL 91 29.849 25.033 -0.878 1.00 0.00 O ATOM 341 N CYS 92 30.021 26.857 0.460 1.00 0.00 N ATOM 342 CA CYS 92 30.705 26.175 1.561 1.00 0.00 C ATOM 343 C CYS 92 30.222 26.639 2.939 1.00 0.00 C ATOM 344 O CYS 92 29.884 27.802 3.118 1.00 0.00 O ATOM 345 N SER 93 30.205 25.715 3.913 1.00 0.00 N ATOM 346 CA SER 93 29.769 25.893 5.309 1.00 0.00 C ATOM 347 C SER 93 28.646 26.848 5.711 1.00 0.00 C ATOM 348 O SER 93 27.463 26.504 5.806 1.00 0.00 O ATOM 349 N ASN 94 29.118 28.053 6.053 1.00 0.00 N ATOM 350 CA ASN 94 28.271 29.164 6.475 1.00 0.00 C ATOM 351 C ASN 94 27.575 29.927 5.339 1.00 0.00 C ATOM 352 O ASN 94 26.611 30.656 5.578 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 248 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 89.12 31.4 118 56.7 208 ARMSMC SECONDARY STRUCTURE . . 91.84 29.1 86 58.9 146 ARMSMC SURFACE . . . . . . . . 87.49 35.8 81 58.7 138 ARMSMC BURIED . . . . . . . . 92.60 21.6 37 52.9 70 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 90 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 83 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 66 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 61 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 62 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 45 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 44 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 20 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 18 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 13.10 (Number of atoms: 62) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 13.10 62 59.0 105 CRMSCA CRN = ALL/NP . . . . . 0.2113 CRMSCA SECONDARY STRUCTURE . . 12.62 45 61.6 73 CRMSCA SURFACE . . . . . . . . 13.93 43 61.4 70 CRMSCA BURIED . . . . . . . . 11.01 19 54.3 35 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.85 248 47.9 518 CRMSMC SECONDARY STRUCTURE . . 12.37 180 49.7 362 CRMSMC SURFACE . . . . . . . . 13.65 172 49.9 345 CRMSMC BURIED . . . . . . . . 10.83 76 43.9 173 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 388 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 326 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 279 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 257 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 131 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.85 248 30.7 808 CRMSALL SECONDARY STRUCTURE . . 12.37 180 31.5 571 CRMSALL SURFACE . . . . . . . . 13.65 172 32.0 537 CRMSALL BURIED . . . . . . . . 10.83 76 28.0 271 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.917 1.000 0.500 62 59.0 105 ERRCA SECONDARY STRUCTURE . . 11.452 1.000 0.500 45 61.6 73 ERRCA SURFACE . . . . . . . . 12.770 1.000 0.500 43 61.4 70 ERRCA BURIED . . . . . . . . 9.989 1.000 0.500 19 54.3 35 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.702 1.000 0.500 248 47.9 518 ERRMC SECONDARY STRUCTURE . . 11.246 1.000 0.500 180 49.7 362 ERRMC SURFACE . . . . . . . . 12.525 1.000 0.500 172 49.9 345 ERRMC BURIED . . . . . . . . 9.838 1.000 0.500 76 43.9 173 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 388 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 326 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 279 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 257 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 131 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.702 1.000 0.500 248 30.7 808 ERRALL SECONDARY STRUCTURE . . 11.246 1.000 0.500 180 31.5 571 ERRALL SURFACE . . . . . . . . 12.525 1.000 0.500 172 32.0 537 ERRALL BURIED . . . . . . . . 9.838 1.000 0.500 76 28.0 271 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 5 27 62 105 DISTCA CA (P) 0.00 0.00 0.00 4.76 25.71 105 DISTCA CA (RMS) 0.00 0.00 0.00 4.17 7.28 DISTCA ALL (N) 0 0 0 12 118 248 808 DISTALL ALL (P) 0.00 0.00 0.00 1.49 14.60 808 DISTALL ALL (RMS) 0.00 0.00 0.00 4.26 7.45 DISTALL END of the results output