####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 103 ( 412), selected 103 , name T0580TS328_1-D1 # Molecule2: number of CA atoms 104 ( 789), selected 103 , name T0580-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0580TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 65 8 - 72 4.92 11.00 LCS_AVERAGE: 51.73 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 5 - 26 2.00 14.75 LONGEST_CONTINUOUS_SEGMENT: 22 6 - 27 1.93 14.66 LCS_AVERAGE: 12.05 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 14 - 27 0.96 12.04 LCS_AVERAGE: 7.76 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 103 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT K 2 K 2 5 7 43 4 5 12 14 18 22 26 28 34 37 43 49 59 65 70 73 78 82 83 85 LCS_GDT E 3 E 3 5 8 43 4 5 5 7 12 18 24 27 33 37 43 48 50 60 65 71 78 81 83 85 LCS_GDT L 4 L 4 5 9 43 4 5 5 6 8 18 25 28 34 37 43 48 59 65 70 73 78 82 83 85 LCS_GDT K 5 K 5 8 22 43 7 8 8 10 20 22 24 27 31 34 39 46 50 55 64 71 78 82 83 85 LCS_GDT V 6 V 6 8 22 48 7 8 8 10 20 22 26 28 32 37 41 48 51 60 68 73 78 82 83 85 LCS_GDT L 7 L 7 8 22 51 7 8 8 11 20 22 26 28 32 37 41 48 51 56 64 73 78 82 83 85 LCS_GDT V 8 V 8 8 22 65 7 8 8 11 20 22 26 28 33 37 43 48 59 65 70 73 78 82 83 85 LCS_GDT L 9 L 9 8 22 65 7 8 8 16 20 23 26 28 33 37 43 48 53 64 70 73 78 82 83 85 LCS_GDT C 10 C 10 8 22 65 7 8 14 19 20 23 26 28 34 38 45 54 60 65 70 73 78 82 83 85 LCS_GDT A 11 A 11 8 22 65 7 8 16 19 20 23 26 28 34 38 45 54 60 65 70 73 78 82 83 85 LCS_GDT G 12 G 12 8 22 65 3 8 10 19 20 23 26 31 36 41 47 54 60 65 70 73 78 82 83 85 LCS_GDT S 13 S 13 3 22 65 3 3 5 8 10 20 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT G 14 G 14 14 22 65 5 13 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT T 15 T 15 14 22 65 5 13 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT S 16 S 16 14 22 65 5 13 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT A 17 A 17 14 22 65 9 13 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT Q 18 Q 18 14 22 65 9 13 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT L 19 L 19 14 22 65 9 13 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT A 20 A 20 14 22 65 9 13 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT N 21 N 21 14 22 65 9 13 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT A 22 A 22 14 22 65 9 13 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT I 23 I 23 14 22 65 9 13 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT N 24 N 24 14 22 65 9 13 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT E 25 E 25 14 22 65 9 13 15 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT G 26 G 26 14 22 65 3 4 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT A 27 A 27 14 22 65 3 9 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT N 28 N 28 4 19 65 3 4 4 11 15 22 27 34 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT L 29 L 29 4 7 65 3 4 4 8 10 13 16 23 25 46 48 52 60 65 70 73 78 82 83 85 LCS_GDT T 30 T 30 4 7 65 3 4 6 9 13 18 24 28 34 37 45 54 60 65 70 73 78 82 83 85 LCS_GDT E 31 E 31 4 9 65 3 4 6 10 15 19 25 28 34 37 46 52 60 65 70 73 78 82 83 85 LCS_GDT V 32 V 32 5 9 65 3 4 6 10 15 19 25 28 34 43 48 54 60 65 70 73 78 82 83 85 LCS_GDT R 33 R 33 7 9 65 4 6 7 8 13 16 21 28 34 38 46 52 60 65 70 73 78 82 83 85 LCS_GDT V 34 V 34 7 9 65 4 6 7 8 13 16 21 28 34 38 46 52 60 65 70 73 78 82 83 85 LCS_GDT I 35 I 35 7 9 65 4 6 7 8 14 17 21 28 34 37 43 52 59 65 70 73 78 82 83 85 LCS_GDT A 36 A 36 7 9 65 4 6 7 8 9 17 21 28 34 37 46 52 60 65 70 73 78 82 83 85 LCS_GDT N 37 N 37 7 9 65 4 6 7 13 14 15 21 28 34 37 43 48 59 65 70 73 78 82 83 85 LCS_GDT S 38 S 38 7 9 65 4 6 7 8 13 15 15 23 33 37 43 49 59 65 70 73 78 82 83 85 LCS_GDT G 39 G 39 7 9 65 3 3 7 8 9 10 19 23 34 37 43 52 60 65 70 73 78 82 83 85 LCS_GDT A 40 A 40 3 8 65 3 4 9 18 20 23 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT Y 41 Y 41 3 5 65 3 3 5 6 10 13 27 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT G 42 G 42 4 8 65 4 5 8 13 19 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT A 43 A 43 5 8 65 4 4 15 18 20 23 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT H 44 H 44 5 8 65 4 5 7 7 12 13 26 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT Y 45 Y 45 5 8 65 4 5 7 13 13 16 27 35 40 46 48 54 60 64 70 73 78 82 83 85 LCS_GDT D 46 D 46 5 8 65 4 5 7 7 7 8 10 19 33 40 48 54 60 65 70 73 78 82 83 85 LCS_GDT I 47 I 47 5 8 65 4 5 14 16 20 23 27 35 40 45 48 54 60 65 70 73 78 82 83 85 LCS_GDT M 48 M 48 5 8 65 4 5 7 7 7 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT G 49 G 49 5 8 65 4 5 7 7 7 23 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT V 50 V 50 4 8 65 4 7 14 16 20 23 27 34 40 45 48 54 60 65 70 73 78 82 83 85 LCS_GDT Y 51 Y 51 4 7 65 4 6 15 18 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT D 52 D 52 4 5 65 4 5 5 5 15 23 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT L 53 L 53 3 6 65 3 3 5 9 19 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT I 54 I 54 5 6 65 3 4 5 5 6 7 11 16 25 34 39 51 56 59 65 73 78 82 83 85 LCS_GDT I 55 I 55 5 6 65 3 4 5 6 8 14 27 34 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT L 56 L 56 5 6 65 3 4 5 5 6 14 27 34 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT A 57 A 57 5 6 65 3 4 5 5 10 18 28 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT P 58 P 58 5 6 65 3 4 5 5 6 7 15 24 36 46 48 52 58 64 70 73 78 82 83 85 LCS_GDT Q 59 Q 59 3 12 65 3 3 4 7 10 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT V 60 V 60 5 12 65 4 9 15 18 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT R 61 R 61 5 12 65 4 5 7 13 13 16 24 33 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT S 62 S 62 5 12 65 4 5 7 10 11 11 15 23 36 43 48 53 56 61 66 73 78 82 83 85 LCS_GDT Y 63 Y 63 8 12 65 6 8 8 10 11 18 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT Y 64 Y 64 8 12 65 7 8 13 18 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT R 65 R 65 8 12 65 7 8 8 10 11 12 20 25 39 46 48 54 60 64 70 73 78 82 83 85 LCS_GDT E 66 E 66 8 12 65 7 8 8 10 11 14 22 35 40 46 48 54 60 64 70 73 78 82 83 85 LCS_GDT M 67 M 67 8 12 65 7 8 15 18 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT K 68 K 68 8 12 65 7 8 8 12 18 22 27 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT V 69 V 69 8 12 65 7 8 13 18 19 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT D 70 D 70 8 12 65 7 8 15 18 19 23 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT A 71 A 71 4 5 65 3 9 14 18 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT E 72 E 72 4 5 65 3 4 5 5 5 6 6 10 26 37 48 53 58 64 70 73 78 82 83 85 LCS_GDT R 73 R 73 4 6 64 3 4 5 5 5 6 7 12 16 21 29 33 37 56 62 70 78 82 83 85 LCS_GDT L 74 L 74 4 6 36 3 4 4 4 5 6 9 13 17 22 32 44 51 56 60 64 76 82 83 85 LCS_GDT G 75 G 75 4 8 36 3 4 4 15 20 23 24 27 30 36 44 53 56 61 68 73 78 82 83 85 LCS_GDT I 76 I 76 4 9 32 3 5 6 9 11 12 26 28 30 36 41 47 51 56 60 68 78 82 83 85 LCS_GDT Q 77 Q 77 7 9 32 5 5 7 10 20 23 26 28 32 37 41 48 52 59 67 73 78 82 83 85 LCS_GDT I 78 I 78 7 9 32 5 6 7 14 20 23 24 28 31 37 41 48 52 57 64 71 78 82 83 85 LCS_GDT V 79 V 79 7 9 32 5 13 16 19 20 23 26 28 34 40 48 53 59 65 70 73 78 82 83 85 LCS_GDT A 80 A 80 7 9 32 5 6 16 19 20 23 26 28 34 40 47 53 59 65 70 73 78 82 83 85 LCS_GDT T 81 T 81 7 9 32 5 6 14 16 20 23 27 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT R 82 R 82 7 10 32 3 6 7 10 16 23 27 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT G 83 G 83 9 10 32 3 7 12 17 20 23 29 35 40 46 48 54 60 65 70 73 78 82 83 85 LCS_GDT M 84 M 84 9 10 32 3 8 9 13 14 20 28 33 40 45 48 54 60 65 70 73 78 82 83 85 LCS_GDT E 85 E 85 9 10 32 4 8 9 9 10 10 13 17 25 30 38 45 53 59 66 73 78 80 83 85 LCS_GDT Y 86 Y 86 9 10 31 4 8 9 9 10 10 10 15 19 23 29 39 48 55 59 67 75 78 82 84 LCS_GDT I 87 I 87 9 10 31 5 8 9 9 11 12 13 16 21 26 32 39 47 52 59 65 70 76 80 83 LCS_GDT H 88 H 88 9 10 31 5 8 9 10 11 12 14 16 21 23 27 34 39 47 52 57 61 68 74 77 LCS_GDT L 89 L 89 9 10 31 5 8 9 9 10 10 11 13 16 20 23 29 34 37 42 47 54 61 64 70 LCS_GDT T 90 T 90 9 10 31 5 8 9 9 10 10 11 13 18 21 23 28 33 36 40 43 54 60 62 67 LCS_GDT K 91 K 91 9 14 31 5 8 9 9 11 12 15 19 21 22 25 29 32 36 40 43 47 52 55 59 LCS_GDT S 92 S 92 13 14 31 3 4 5 11 14 15 16 19 21 22 25 28 29 31 39 43 46 52 55 59 LCS_GDT P 93 P 93 13 14 31 9 12 12 13 14 15 16 19 21 22 25 28 29 31 35 43 46 48 55 59 LCS_GDT S 94 S 94 13 14 31 9 12 12 13 14 15 16 19 21 22 25 28 29 31 39 43 46 52 55 59 LCS_GDT K 95 K 95 13 14 31 9 12 12 13 14 15 16 19 21 22 25 28 32 36 40 43 46 52 55 59 LCS_GDT A 96 A 96 13 14 31 9 12 12 13 14 15 16 19 21 22 25 29 32 34 39 43 47 52 55 59 LCS_GDT L 97 L 97 13 14 31 9 12 12 13 14 15 16 19 21 22 25 29 32 36 40 43 47 52 59 63 LCS_GDT Q 98 Q 98 13 14 31 9 12 12 13 14 15 16 19 21 22 25 29 33 36 40 43 49 54 60 66 LCS_GDT F 99 F 99 13 14 31 9 12 12 13 14 15 16 19 21 22 25 29 33 36 40 44 49 55 63 69 LCS_GDT V 100 V 100 13 14 31 9 12 12 13 14 15 16 19 21 23 25 30 33 36 45 52 57 62 67 74 LCS_GDT L 101 L 101 13 14 31 9 12 12 13 14 15 16 19 21 23 25 30 34 39 46 53 58 62 67 74 LCS_GDT E 102 E 102 13 14 31 7 12 12 13 14 15 16 19 21 23 26 31 39 42 46 53 58 62 70 75 LCS_GDT H 103 H 103 13 14 31 6 12 12 13 14 15 16 19 21 24 28 38 47 50 56 65 69 76 79 83 LCS_GDT Y 104 Y 104 13 14 31 6 12 12 13 14 15 16 19 21 27 31 41 47 54 62 67 78 78 83 85 LCS_AVERAGE LCS_A: 23.85 ( 7.76 12.05 51.73 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 13 16 19 20 24 29 35 40 46 48 54 60 65 70 73 78 82 83 85 GDT PERCENT_AT 8.65 12.50 15.38 18.27 19.23 23.08 27.88 33.65 38.46 44.23 46.15 51.92 57.69 62.50 67.31 70.19 75.00 78.85 79.81 81.73 GDT RMS_LOCAL 0.14 0.62 1.10 1.25 1.60 2.13 2.33 2.74 3.00 3.37 3.47 3.94 4.35 4.76 4.91 5.13 5.55 5.78 5.88 6.01 GDT RMS_ALL_AT 11.91 11.82 12.47 12.60 10.91 11.18 11.11 10.98 11.07 11.16 10.88 11.07 10.92 10.69 10.79 10.74 10.80 10.71 10.59 10.50 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA K 2 K 2 8.956 5 0.588 0.588 9.686 1.548 0.688 LGA E 3 E 3 12.301 5 0.081 0.081 12.301 0.000 0.000 LGA L 4 L 4 9.459 4 0.059 0.059 12.486 0.357 0.179 LGA K 5 K 5 12.005 5 0.628 0.628 12.091 0.000 0.000 LGA V 6 V 6 10.182 3 0.067 0.067 10.651 0.119 0.068 LGA L 7 L 7 10.316 4 0.067 0.067 10.439 0.119 0.060 LGA V 8 V 8 8.287 3 0.023 0.023 8.870 4.286 2.449 LGA L 9 L 9 8.761 4 0.012 0.012 8.761 4.405 2.202 LGA C 10 C 10 6.951 2 0.112 0.112 7.525 10.119 6.746 LGA A 11 A 11 7.198 1 0.175 0.175 7.198 11.667 9.333 LGA G 12 G 12 6.254 0 0.652 0.652 7.193 16.667 16.667 LGA S 13 S 13 3.748 2 0.094 0.094 4.779 45.476 30.317 LGA G 14 G 14 2.218 0 0.244 0.244 2.218 68.810 68.810 LGA T 15 T 15 2.055 3 0.050 0.050 2.133 68.810 39.320 LGA S 16 S 16 1.848 2 0.053 0.053 2.005 75.119 50.079 LGA A 17 A 17 1.115 1 0.062 0.062 1.361 85.952 68.762 LGA Q 18 Q 18 0.862 5 0.014 0.014 1.086 85.952 38.201 LGA L 19 L 19 1.848 4 0.026 0.026 1.848 75.000 37.500 LGA A 20 A 20 1.701 1 0.013 0.013 1.701 77.143 61.714 LGA N 21 N 21 0.537 4 0.040 0.040 0.748 95.238 47.619 LGA A 22 A 22 1.124 1 0.023 0.023 1.124 83.690 66.952 LGA I 23 I 23 1.612 4 0.019 0.019 1.612 79.286 39.643 LGA N 24 N 24 1.318 4 0.023 0.023 1.318 81.429 40.714 LGA E 25 E 25 0.603 5 0.143 0.143 2.242 81.786 36.349 LGA G 26 G 26 3.022 0 0.055 0.055 3.838 55.833 55.833 LGA A 27 A 27 1.579 1 0.369 0.369 2.311 68.810 55.048 LGA N 28 N 28 5.626 4 0.582 0.582 7.395 22.976 11.488 LGA L 29 L 29 8.398 4 0.160 0.160 9.421 6.071 3.036 LGA T 30 T 30 7.598 3 0.406 0.406 8.285 7.262 4.150 LGA E 31 E 31 7.882 5 0.168 0.168 8.770 7.500 3.333 LGA V 32 V 32 5.694 3 0.066 0.066 5.767 22.619 12.925 LGA R 33 R 33 7.020 7 0.164 0.164 7.115 11.667 4.242 LGA V 34 V 34 6.427 3 0.030 0.030 7.247 13.452 7.687 LGA I 35 I 35 7.679 4 0.068 0.068 7.679 8.571 4.286 LGA A 36 A 36 6.921 1 0.056 0.056 8.030 8.810 7.048 LGA N 37 N 37 8.201 4 0.188 0.188 8.201 5.357 2.679 LGA S 38 S 38 7.703 2 0.090 0.090 7.988 7.143 4.762 LGA G 39 G 39 7.456 0 0.640 0.640 7.485 15.833 15.833 LGA A 40 A 40 2.539 1 0.503 0.503 3.783 48.452 38.762 LGA Y 41 Y 41 5.306 8 0.023 0.023 5.306 37.500 12.500 LGA G 42 G 42 4.003 0 0.659 0.659 4.939 44.167 44.167 LGA A 43 A 43 3.096 1 0.275 0.275 3.594 55.833 44.667 LGA H 44 H 44 4.175 6 0.257 0.257 4.175 50.357 20.143 LGA Y 45 Y 45 5.214 8 0.037 0.037 5.607 32.262 10.754 LGA D 46 D 46 5.632 4 0.065 0.065 5.632 29.286 14.643 LGA I 47 I 47 4.129 4 0.206 0.206 4.129 46.905 23.452 LGA M 48 M 48 3.618 4 0.100 0.100 3.618 55.833 27.917 LGA G 49 G 49 4.135 0 0.093 0.093 4.135 48.690 48.690 LGA V 50 V 50 4.419 3 0.236 0.236 5.246 40.952 23.401 LGA Y 51 Y 51 1.771 8 0.545 0.545 3.792 65.476 21.825 LGA D 52 D 52 3.479 4 0.503 0.503 3.761 55.833 27.917 LGA L 53 L 53 3.181 4 0.081 0.081 5.306 43.095 21.548 LGA I 54 I 54 8.055 4 0.549 0.549 8.055 9.167 4.583 LGA I 55 I 55 5.596 4 0.234 0.234 6.161 19.286 9.643 LGA L 56 L 56 5.776 4 0.043 0.043 5.776 25.119 12.560 LGA A 57 A 57 4.862 1 0.152 0.152 6.537 24.286 19.429 LGA P 58 P 58 6.346 3 0.562 0.562 6.346 23.929 13.673 LGA Q 59 Q 59 3.911 5 0.713 0.713 4.898 39.048 17.354 LGA V 60 V 60 1.848 3 0.379 0.379 1.848 79.286 45.306 LGA R 61 R 61 5.209 7 0.070 0.070 5.801 30.952 11.255 LGA S 62 S 62 7.317 2 0.173 0.173 7.372 14.643 9.762 LGA Y 63 Y 63 4.557 8 0.215 0.215 4.725 44.286 14.762 LGA Y 64 Y 64 2.101 8 0.061 0.061 3.117 61.190 20.397 LGA R 65 R 65 6.188 7 0.026 0.026 6.188 25.238 9.177 LGA E 66 E 66 5.299 5 0.055 0.055 5.299 36.429 16.190 LGA M 67 M 67 2.167 4 0.060 0.060 2.774 66.905 33.452 LGA K 68 K 68 4.214 5 0.011 0.011 4.660 44.167 19.630 LGA V 69 V 69 3.531 3 0.200 0.200 3.531 57.738 32.993 LGA D 70 D 70 2.649 4 0.275 0.275 2.649 71.310 35.655 LGA A 71 A 71 1.826 1 0.136 0.136 3.242 67.619 54.095 LGA E 72 E 72 6.352 5 0.573 0.573 8.779 16.071 7.143 LGA R 73 R 73 10.002 7 0.633 0.633 11.327 1.190 0.433 LGA L 74 L 74 11.952 4 0.661 0.661 11.952 0.000 0.000 LGA G 75 G 75 9.302 0 0.428 0.428 10.152 0.476 0.476 LGA I 76 I 76 12.631 4 0.357 0.357 12.631 0.000 0.000 LGA Q 77 Q 77 10.240 5 0.502 0.502 12.935 0.000 0.000 LGA I 78 I 78 10.446 4 0.033 0.033 10.446 4.643 2.321 LGA V 79 V 79 5.950 3 0.038 0.038 8.789 10.595 6.054 LGA A 80 A 80 6.871 1 0.046 0.046 6.871 26.310 21.048 LGA T 81 T 81 3.791 3 0.196 0.196 5.941 32.024 18.299 LGA R 82 R 82 4.038 7 0.204 0.204 4.038 48.571 17.662 LGA G 83 G 83 2.257 0 0.497 0.497 5.186 49.524 49.524 LGA M 84 M 84 5.576 4 0.095 0.095 10.183 19.048 9.524 LGA E 85 E 85 11.191 5 0.081 0.081 14.665 1.190 0.529 LGA Y 86 Y 86 12.402 8 0.141 0.141 15.251 0.000 0.000 LGA I 87 I 87 13.755 4 0.290 0.290 18.143 0.000 0.000 LGA H 88 H 88 18.224 6 0.030 0.030 22.542 0.000 0.000 LGA L 89 L 89 21.484 4 0.065 0.065 25.243 0.000 0.000 LGA T 90 T 90 22.402 3 0.048 0.048 26.401 0.000 0.000 LGA K 91 K 91 26.942 5 0.113 0.113 29.858 0.000 0.000 LGA S 92 S 92 28.506 2 0.585 0.585 28.506 0.000 0.000 LGA P 93 P 93 27.149 3 0.099 0.099 27.735 0.000 0.000 LGA S 94 S 94 29.072 2 0.022 0.022 29.072 0.000 0.000 LGA K 95 K 95 27.594 5 0.021 0.021 28.321 0.000 0.000 LGA A 96 A 96 23.347 1 0.032 0.032 25.103 0.000 0.000 LGA L 97 L 97 23.160 4 0.018 0.018 23.563 0.000 0.000 LGA Q 98 Q 98 24.622 5 0.018 0.018 24.622 0.000 0.000 LGA F 99 F 99 21.202 7 0.062 0.062 22.536 0.000 0.000 LGA V 100 V 100 17.643 3 0.043 0.043 19.146 0.000 0.000 LGA L 101 L 101 19.348 4 0.048 0.048 19.348 0.000 0.000 LGA E 102 E 102 19.182 5 0.032 0.032 19.411 0.000 0.000 LGA H 103 H 103 14.254 6 0.105 0.105 16.069 0.000 0.000 LGA Y 104 Y 104 13.448 8 0.393 0.393 16.935 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 103 412 412 100.00 779 412 52.89 104 SUMMARY(RMSD_GDC): 9.286 9.228 9.228 28.075 16.827 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 103 104 4.0 35 2.74 33.654 28.064 1.234 LGA_LOCAL RMSD: 2.736 Number of atoms: 35 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.980 Number of assigned atoms: 103 Std_ASGN_ATOMS RMSD: 9.286 Standard rmsd on all 103 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.305448 * X + -0.743992 * Y + 0.594287 * Z + 14.138028 Y_new = 0.534551 * X + 0.382514 * Y + 0.753617 * Z + -38.491249 Z_new = -0.788008 * X + 0.547868 * Y + 0.280863 * Z + 46.975681 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.089930 0.907567 1.097082 [DEG: 119.7441 51.9998 62.8582 ] ZXZ: 2.473854 1.286103 -0.963261 [DEG: 141.7414 73.6883 -55.1908 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0580TS328_1-D1 REMARK 2: T0580-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0580TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 103 104 4.0 35 2.74 28.064 9.29 REMARK ---------------------------------------------------------- MOLECULE T0580TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0580 REMARK MODEL 1 REMARK PARENT 1vec_A ATOM 5 N LYS 2 7.213 16.289 35.924 1.00 3.00 N ATOM 6 CA LYS 2 8.389 16.497 35.066 1.00 3.00 C ATOM 7 C LYS 2 9.693 16.789 35.842 1.00 3.00 C ATOM 8 O LYS 2 10.652 17.298 35.270 1.00 3.00 O ATOM 9 N GLU 3 9.720 16.470 37.131 1.00 3.00 N ATOM 10 CA GLU 3 10.896 16.705 37.953 1.00 3.00 C ATOM 11 C GLU 3 11.767 15.466 37.999 1.00 3.00 C ATOM 12 O GLU 3 11.280 14.353 37.808 1.00 3.00 O ATOM 13 N LEU 4 13.051 15.664 38.265 1.00 3.00 N ATOM 14 CA LEU 4 13.966 14.547 38.376 1.00 3.00 C ATOM 15 C LEU 4 13.485 13.828 39.642 1.00 3.00 C ATOM 16 O LEU 4 13.394 14.454 40.699 1.00 3.00 O ATOM 17 N LYS 5 13.184 12.540 39.543 1.00 3.00 N ATOM 18 CA LYS 5 12.679 11.802 40.696 1.00 3.00 C ATOM 19 C LYS 5 13.608 10.721 41.201 1.00 3.00 C ATOM 20 O LYS 5 13.407 10.181 42.289 1.00 3.00 O ATOM 21 N VAL 6 14.630 10.399 40.426 1.00 3.00 N ATOM 22 CA VAL 6 15.564 9.359 40.842 1.00 3.00 C ATOM 23 C VAL 6 16.945 9.652 40.318 1.00 3.00 C ATOM 24 O VAL 6 17.117 10.288 39.263 1.00 3.00 O ATOM 25 N LEU 7 17.937 9.189 41.061 1.00 3.00 N ATOM 26 CA LEU 7 19.318 9.391 40.670 1.00 3.00 C ATOM 27 C LEU 7 20.119 8.137 40.906 1.00 3.00 C ATOM 28 O LEU 7 19.892 7.423 41.882 1.00 3.00 O ATOM 29 N VAL 8 21.044 7.860 39.996 1.00 3.00 N ATOM 30 CA VAL 8 21.919 6.702 40.099 1.00 3.00 C ATOM 31 C VAL 8 23.346 7.263 39.983 1.00 3.00 C ATOM 32 O VAL 8 23.659 7.974 39.017 1.00 3.00 O ATOM 33 N LEU 9 24.196 6.978 40.970 1.00 3.00 N ATOM 34 CA LEU 9 25.566 7.464 40.940 1.00 3.00 C ATOM 35 C LEU 9 26.509 6.323 40.615 1.00 3.00 C ATOM 36 O LEU 9 26.406 5.234 41.176 1.00 3.00 O ATOM 37 N CYS 10 27.423 6.568 39.691 1.00 3.00 N ATOM 38 CA CYS 10 28.386 5.544 39.310 1.00 3.00 C ATOM 39 C CYS 10 29.750 6.214 39.216 1.00 3.00 C ATOM 40 O CYS 10 29.834 7.432 39.075 1.00 3.00 O ATOM 41 N ALA 11 30.831 5.436 39.338 1.00 3.00 N ATOM 42 CA ALA 11 32.202 5.969 39.276 1.00 3.00 C ATOM 43 C ALA 11 32.769 6.296 37.906 1.00 3.00 C ATOM 44 O ALA 11 33.686 7.121 37.791 1.00 3.00 O ATOM 45 N GLY 12 32.230 5.677 36.864 1.00 3.00 N ATOM 46 CA GLY 12 32.742 5.925 35.523 1.00 3.00 C ATOM 47 C GLY 12 31.673 6.265 34.502 1.00 3.00 C ATOM 48 O GLY 12 30.499 5.907 34.645 1.00 3.00 O ATOM 49 N SER 13 32.097 6.957 33.456 1.00 3.00 N ATOM 50 CA SER 13 31.196 7.337 32.391 1.00 3.00 C ATOM 51 C SER 13 30.752 6.084 31.665 1.00 3.00 C ATOM 52 O SER 13 29.622 6.000 31.191 1.00 3.00 O ATOM 53 N GLY 14 31.654 5.113 31.586 1.00 3.00 N ATOM 54 CA GLY 14 31.389 3.830 30.940 1.00 3.00 C ATOM 55 C GLY 14 30.181 3.108 31.568 1.00 3.00 C ATOM 56 O GLY 14 29.262 2.650 30.872 1.00 3.00 O ATOM 57 N THR 15 30.171 3.007 32.892 1.00 3.00 N ATOM 58 CA THR 15 29.062 2.343 33.563 1.00 3.00 C ATOM 59 C THR 15 27.811 3.196 33.428 1.00 3.00 C ATOM 60 O THR 15 26.714 2.668 33.253 1.00 3.00 O ATOM 61 N SER 16 27.969 4.516 33.506 1.00 3.00 N ATOM 62 CA SER 16 26.820 5.401 33.381 1.00 3.00 C ATOM 63 C SER 16 26.067 5.130 32.076 1.00 3.00 C ATOM 64 O SER 16 24.844 5.069 32.065 1.00 3.00 O ATOM 65 N ALA 17 26.803 4.966 30.980 1.00 3.00 N ATOM 66 CA ALA 17 26.175 4.720 29.686 1.00 3.00 C ATOM 67 C ALA 17 25.522 3.355 29.623 1.00 3.00 C ATOM 68 O ALA 17 24.420 3.220 29.098 1.00 3.00 O ATOM 69 N GLN 18 26.211 2.343 30.139 1.00 3.00 N ATOM 70 CA GLN 18 25.679 0.990 30.130 1.00 3.00 C ATOM 71 C GLN 18 24.384 0.913 30.907 1.00 3.00 C ATOM 72 O GLN 18 23.412 0.311 30.453 1.00 3.00 O ATOM 73 N LEU 19 24.373 1.537 32.079 1.00 3.00 N ATOM 74 CA LEU 19 23.186 1.541 32.930 1.00 3.00 C ATOM 75 C LEU 19 22.075 2.372 32.288 1.00 3.00 C ATOM 76 O LEU 19 20.901 2.004 32.351 1.00 3.00 O ATOM 77 N ALA 20 22.448 3.493 31.671 1.00 3.00 N ATOM 78 CA ALA 20 21.461 4.361 31.028 1.00 3.00 C ATOM 79 C ALA 20 20.819 3.656 29.828 1.00 3.00 C ATOM 80 O ALA 20 19.610 3.756 29.607 1.00 3.00 O ATOM 81 N ASN 21 21.627 2.947 29.046 1.00 3.00 N ATOM 82 CA ASN 21 21.072 2.244 27.895 1.00 3.00 C ATOM 83 C ASN 21 20.072 1.197 28.382 1.00 3.00 C ATOM 84 O ASN 21 18.951 1.093 27.865 1.00 3.00 O ATOM 85 N ALA 22 20.476 0.419 29.380 1.00 3.00 N ATOM 86 CA ALA 22 19.588 -0.595 29.926 1.00 3.00 C ATOM 87 C ALA 22 18.290 0.057 30.426 1.00 3.00 C ATOM 88 O ALA 22 17.190 -0.413 30.130 1.00 3.00 O ATOM 89 N ILE 23 18.432 1.154 31.163 1.00 3.00 N ATOM 90 CA ILE 23 17.282 1.862 31.707 1.00 3.00 C ATOM 91 C ILE 23 16.348 2.333 30.586 1.00 3.00 C ATOM 92 O ILE 23 15.125 2.187 30.689 1.00 3.00 O ATOM 93 N ASN 24 16.925 2.883 29.519 1.00 3.00 N ATOM 94 CA ASN 24 16.133 3.370 28.408 1.00 3.00 C ATOM 95 C ASN 24 15.418 2.206 27.733 1.00 3.00 C ATOM 96 O ASN 24 14.282 2.347 27.301 1.00 3.00 O ATOM 97 N GLU 25 16.066 1.050 27.661 1.00 3.00 N ATOM 98 CA GLU 25 15.418 -0.109 27.051 1.00 3.00 C ATOM 99 C GLU 25 13.947 -0.244 26.609 1.00 3.00 C ATOM 100 O GLU 25 13.608 -0.461 25.434 1.00 3.00 O ATOM 101 N GLY 26 13.050 -0.033 27.598 1.00 3.00 N ATOM 102 CA GLY 26 11.656 -0.141 27.232 1.00 3.00 C ATOM 103 C GLY 26 10.942 1.135 26.795 1.00 3.00 C ATOM 104 O GLY 26 10.309 1.122 25.754 1.00 3.00 O ATOM 105 N ALA 27 11.019 2.195 27.607 1.00 3.00 N ATOM 106 CA ALA 27 10.137 3.343 27.560 1.00 3.00 C ATOM 107 C ALA 27 8.780 2.937 28.151 1.00 3.00 C ATOM 108 O ALA 27 7.711 3.442 27.749 1.00 3.00 O ATOM 109 N ASN 28 8.805 2.030 29.136 1.00 3.00 N ATOM 110 CA ASN 28 7.582 1.481 29.682 1.00 3.00 C ATOM 111 C ASN 28 6.455 2.485 29.885 1.00 3.00 C ATOM 112 O ASN 28 6.635 3.421 30.692 1.00 3.00 O ATOM 113 N LEU 29 5.310 2.221 29.259 1.00 3.00 N ATOM 114 CA LEU 29 4.069 2.956 29.463 1.00 3.00 C ATOM 115 C LEU 29 4.028 4.394 28.962 1.00 3.00 C ATOM 116 O LEU 29 2.937 5.042 29.033 1.00 3.00 O ATOM 117 N THR 30 5.104 4.868 28.354 1.00 3.00 N ATOM 118 CA THR 30 5.100 6.220 27.755 1.00 3.00 C ATOM 119 C THR 30 5.770 7.551 28.037 1.00 3.00 C ATOM 120 O THR 30 5.093 8.487 28.443 1.00 3.00 O ATOM 121 N GLU 31 7.082 7.648 27.844 1.00 3.00 N ATOM 122 CA GLU 31 7.745 8.925 28.061 1.00 3.00 C ATOM 123 C GLU 31 8.748 9.073 29.190 1.00 3.00 C ATOM 124 O GLU 31 9.009 10.189 29.628 1.00 3.00 O ATOM 125 N VAL 32 9.312 7.976 29.679 1.00 3.00 N ATOM 126 CA VAL 32 10.307 8.090 30.734 1.00 3.00 C ATOM 127 C VAL 32 11.550 8.743 30.126 1.00 3.00 C ATOM 128 O VAL 32 12.003 8.352 29.047 1.00 3.00 O ATOM 129 N ARG 33 12.100 9.750 30.803 1.00 3.00 N ATOM 130 CA ARG 33 13.278 10.427 30.284 1.00 3.00 C ATOM 131 C ARG 33 14.506 10.201 31.121 1.00 3.00 C ATOM 132 O ARG 33 14.543 10.550 32.299 1.00 3.00 O ATOM 133 N VAL 34 15.521 9.621 30.498 1.00 3.00 N ATOM 134 CA VAL 34 16.772 9.335 31.179 1.00 3.00 C ATOM 135 C VAL 34 17.864 10.235 30.661 1.00 3.00 C ATOM 136 O VAL 34 17.875 10.587 29.475 1.00 3.00 O ATOM 137 N ILE 35 18.773 10.612 31.557 1.00 3.00 N ATOM 138 CA ILE 35 19.906 11.453 31.193 1.00 3.00 C ATOM 139 C ILE 35 21.171 11.045 31.933 1.00 3.00 C ATOM 140 O ILE 35 21.189 10.985 33.160 1.00 3.00 O ATOM 141 N ALA 36 22.221 10.786 31.168 1.00 3.00 N ATOM 142 CA ALA 36 23.515 10.428 31.716 1.00 3.00 C ATOM 143 C ALA 36 24.353 11.682 31.674 1.00 3.00 C ATOM 144 O ALA 36 24.362 12.385 30.664 1.00 3.00 O ATOM 145 N ASN 37 25.046 11.986 32.761 1.00 3.00 N ATOM 146 CA ASN 37 25.901 13.168 32.746 1.00 3.00 C ATOM 147 C ASN 37 27.139 12.871 33.551 1.00 3.00 C ATOM 148 O ASN 37 27.069 12.597 34.754 1.00 3.00 O ATOM 149 N SER 38 28.279 12.903 32.860 1.00 3.00 N ATOM 150 CA SER 38 29.576 12.579 33.448 1.00 3.00 C ATOM 151 C SER 38 30.688 13.501 32.975 1.00 3.00 C ATOM 152 O SER 38 30.470 14.395 32.175 1.00 3.00 O ATOM 153 N GLY 39 31.894 13.248 33.457 1.00 3.00 N ATOM 154 CA GLY 39 33.027 14.049 33.047 1.00 3.00 C ATOM 155 C GLY 39 33.218 14.042 31.543 1.00 3.00 C ATOM 156 O GLY 39 33.778 14.984 30.973 1.00 3.00 O ATOM 157 N ALA 40 32.771 12.976 30.891 1.00 3.00 N ATOM 158 CA ALA 40 32.897 12.900 29.443 1.00 3.00 C ATOM 159 C ALA 40 32.141 14.015 28.721 1.00 3.00 C ATOM 160 O ALA 40 32.748 14.973 28.221 1.00 3.00 O ATOM 161 N TYR 41 30.815 13.882 28.667 1.00 3.00 N ATOM 162 CA TYR 41 29.942 14.862 28.025 1.00 3.00 C ATOM 163 C TYR 41 30.264 16.273 28.530 1.00 3.00 C ATOM 164 O TYR 41 30.334 16.483 29.737 1.00 3.00 O ATOM 165 N GLY 42 30.463 17.234 27.621 1.00 3.00 N ATOM 166 CA GLY 42 30.779 18.620 28.020 1.00 3.00 C ATOM 167 C GLY 42 29.630 19.266 28.794 1.00 3.00 C ATOM 168 O GLY 42 28.461 19.134 28.435 1.00 3.00 O ATOM 169 N ALA 43 29.992 19.978 29.852 1.00 3.00 N ATOM 170 CA ALA 43 29.050 20.647 30.727 1.00 3.00 C ATOM 171 C ALA 43 27.977 21.463 30.025 1.00 3.00 C ATOM 172 O ALA 43 26.791 21.301 30.309 1.00 3.00 O ATOM 173 N HIS 44 28.397 22.346 29.120 1.00 3.00 N ATOM 174 CA HIS 44 27.472 23.195 28.373 1.00 3.00 C ATOM 175 C HIS 44 26.251 22.463 27.853 1.00 3.00 C ATOM 176 O HIS 44 25.132 22.863 28.126 1.00 3.00 O ATOM 177 N TYR 45 26.459 21.392 27.094 1.00 3.00 N ATOM 178 CA TYR 45 25.326 20.667 26.538 1.00 3.00 C ATOM 179 C TYR 45 24.399 20.100 27.595 1.00 3.00 C ATOM 180 O TYR 45 23.176 20.126 27.444 1.00 3.00 O ATOM 181 N ASP 46 24.970 19.581 28.670 1.00 3.00 N ATOM 182 CA ASP 46 24.134 19.020 29.720 1.00 3.00 C ATOM 183 C ASP 46 23.270 20.099 30.409 1.00 3.00 C ATOM 184 O ASP 46 22.132 19.820 30.801 1.00 3.00 O ATOM 185 N ILE 47 23.788 21.324 30.527 1.00 3.00 N ATOM 186 CA ILE 47 23.025 22.417 31.137 1.00 3.00 C ATOM 187 C ILE 47 21.786 22.612 30.288 1.00 3.00 C ATOM 188 O ILE 47 20.662 22.659 30.791 1.00 3.00 O ATOM 189 N MET 48 21.999 22.715 28.983 1.00 3.00 N ATOM 190 CA MET 48 20.896 22.900 28.059 1.00 3.00 C ATOM 191 C MET 48 19.905 21.757 28.157 1.00 3.00 C ATOM 192 O MET 48 18.698 21.987 28.289 1.00 3.00 O ATOM 193 N GLY 49 20.404 20.524 28.102 1.00 3.00 N ATOM 194 CA GLY 49 19.517 19.358 28.197 1.00 3.00 C ATOM 195 C GLY 49 18.638 19.343 29.449 1.00 3.00 C ATOM 196 O GLY 49 17.516 18.853 29.419 1.00 3.00 O ATOM 197 N VAL 50 19.149 19.872 30.549 1.00 3.00 N ATOM 198 CA VAL 50 18.377 19.884 31.773 1.00 3.00 C ATOM 199 C VAL 50 16.984 19.308 32.036 1.00 3.00 C ATOM 200 O VAL 50 16.326 19.689 33.007 1.00 3.00 O ATOM 201 N TYR 51 16.533 18.398 31.174 1.00 3.00 N ATOM 202 CA TYR 51 15.190 17.859 31.305 1.00 3.00 C ATOM 203 C TYR 51 15.042 16.347 31.330 1.00 3.00 C ATOM 204 O TYR 51 14.042 15.805 30.840 1.00 3.00 O ATOM 205 N ASP 52 16.022 15.654 31.898 1.00 3.00 N ATOM 206 CA ASP 52 15.913 14.202 31.986 1.00 3.00 C ATOM 207 C ASP 52 15.184 13.920 33.292 1.00 3.00 C ATOM 208 O ASP 52 15.769 13.467 34.273 1.00 3.00 O ATOM 209 N LEU 53 13.894 14.212 33.295 1.00 3.00 N ATOM 210 CA LEU 53 13.055 14.024 34.475 1.00 3.00 C ATOM 211 C LEU 53 12.943 12.571 34.948 1.00 3.00 C ATOM 212 O LEU 53 12.987 11.637 34.137 1.00 3.00 O ATOM 213 N ILE 54 12.814 12.407 36.265 1.00 3.00 N ATOM 214 CA ILE 54 12.677 11.106 36.918 1.00 3.00 C ATOM 215 C ILE 54 13.834 10.132 36.642 1.00 3.00 C ATOM 216 O ILE 54 13.681 8.917 36.800 1.00 3.00 O ATOM 217 N ILE 55 14.990 10.671 36.263 1.00 3.00 N ATOM 218 CA ILE 55 16.128 9.813 35.955 1.00 3.00 C ATOM 219 C ILE 55 17.463 10.331 35.489 1.00 3.00 C ATOM 220 O ILE 55 17.696 10.449 34.288 1.00 3.00 O ATOM 221 N LEU 56 18.320 10.665 36.448 1.00 3.00 N ATOM 222 CA LEU 56 19.656 11.145 36.149 1.00 3.00 C ATOM 223 C LEU 56 20.630 10.070 36.588 1.00 3.00 C ATOM 224 O LEU 56 20.541 9.581 37.706 1.00 3.00 O ATOM 225 N ALA 57 21.529 9.686 35.680 1.00 3.00 N ATOM 226 CA ALA 57 22.543 8.671 35.949 1.00 3.00 C ATOM 227 C ALA 57 23.824 9.466 35.736 1.00 3.00 C ATOM 228 O ALA 57 24.019 10.043 34.667 1.00 3.00 O ATOM 229 N PRO 58 24.689 9.511 36.741 1.00 3.00 N ATOM 230 CA PRO 58 25.877 10.348 36.632 1.00 3.00 C ATOM 231 C PRO 58 27.069 9.993 37.485 1.00 3.00 C ATOM 232 O PRO 58 26.983 9.170 38.410 1.00 3.00 O ATOM 233 N GLN 59 28.190 10.640 37.166 1.00 3.00 N ATOM 234 CA GLN 59 29.425 10.466 37.933 1.00 3.00 C ATOM 235 C GLN 59 29.390 11.545 39.027 1.00 3.00 C ATOM 236 O GLN 59 28.765 12.588 38.856 1.00 3.00 O ATOM 237 N VAL 60 30.036 11.296 40.169 1.00 3.00 N ATOM 238 CA VAL 60 30.065 12.222 41.301 1.00 3.00 C ATOM 239 C VAL 60 30.212 13.725 41.063 1.00 3.00 C ATOM 240 O VAL 60 29.308 14.492 41.388 1.00 3.00 O ATOM 241 N ARG 61 31.348 14.140 40.509 1.00 3.00 N ATOM 242 CA ARG 61 31.592 15.559 40.301 1.00 3.00 C ATOM 243 C ARG 61 30.610 16.320 39.422 1.00 3.00 C ATOM 244 O ARG 61 30.141 17.410 39.779 1.00 3.00 O ATOM 245 N SER 62 30.305 15.746 38.264 1.00 3.00 N ATOM 246 CA SER 62 29.405 16.377 37.319 1.00 3.00 C ATOM 247 C SER 62 28.036 16.674 37.905 1.00 3.00 C ATOM 248 O SER 62 27.520 17.789 37.755 1.00 3.00 O ATOM 249 N TYR 63 27.425 15.695 38.573 1.00 3.00 N ATOM 250 CA TYR 63 26.103 15.967 39.110 1.00 3.00 C ATOM 251 C TYR 63 26.161 16.991 40.259 1.00 3.00 C ATOM 252 O TYR 63 25.273 17.828 40.371 1.00 3.00 O ATOM 253 N TYR 64 27.199 16.953 41.095 1.00 3.00 N ATOM 254 CA TYR 64 27.284 17.930 42.185 1.00 3.00 C ATOM 255 C TYR 64 27.382 19.324 41.568 1.00 3.00 C ATOM 256 O TYR 64 26.785 20.291 42.052 1.00 3.00 O ATOM 257 N ARG 65 28.153 19.417 40.493 1.00 3.00 N ATOM 258 CA ARG 65 28.323 20.692 39.797 1.00 3.00 C ATOM 259 C ARG 65 26.978 21.191 39.268 1.00 3.00 C ATOM 260 O ARG 65 26.607 22.355 39.449 1.00 3.00 O ATOM 261 N GLU 66 26.233 20.294 38.629 1.00 3.00 N ATOM 262 CA GLU 66 24.939 20.650 38.061 1.00 3.00 C ATOM 263 C GLU 66 23.932 21.013 39.121 1.00 3.00 C ATOM 264 O GLU 66 23.019 21.804 38.871 1.00 3.00 O ATOM 265 N MET 67 24.083 20.431 40.308 1.00 3.00 N ATOM 266 CA MET 67 23.176 20.741 41.401 1.00 3.00 C ATOM 267 C MET 67 23.475 22.134 41.966 1.00 3.00 C ATOM 268 O MET 67 22.577 22.969 42.115 1.00 3.00 O ATOM 269 N LYS 68 24.745 22.384 42.257 1.00 3.00 N ATOM 270 CA LYS 68 25.161 23.669 42.816 1.00 3.00 C ATOM 271 C LYS 68 24.789 24.822 41.869 1.00 3.00 C ATOM 272 O LYS 68 24.362 25.879 42.323 1.00 3.00 O ATOM 273 N VAL 69 24.943 24.618 40.559 1.00 3.00 N ATOM 274 CA VAL 69 24.609 25.657 39.575 1.00 3.00 C ATOM 275 C VAL 69 23.110 25.899 39.510 1.00 3.00 C ATOM 276 O VAL 69 22.658 26.844 38.866 1.00 3.00 O ATOM 277 N ASP 70 22.345 25.029 40.164 1.00 3.00 N ATOM 278 CA ASP 70 20.903 25.166 40.161 1.00 3.00 C ATOM 279 C ASP 70 20.255 24.700 38.876 1.00 3.00 C ATOM 280 O ASP 70 19.114 25.046 38.600 1.00 3.00 O ATOM 281 N ALA 71 20.982 23.919 38.082 1.00 3.00 N ATOM 282 CA ALA 71 20.464 23.410 36.805 1.00 3.00 C ATOM 283 C ALA 71 19.726 22.086 37.007 1.00 3.00 C ATOM 284 O ALA 71 18.698 21.826 36.386 1.00 3.00 O ATOM 285 N GLU 72 20.260 21.246 37.884 1.00 3.00 N ATOM 286 CA GLU 72 19.634 19.970 38.215 1.00 3.00 C ATOM 287 C GLU 72 19.216 19.351 39.535 1.00 3.00 C ATOM 288 O GLU 72 20.066 19.040 40.373 1.00 3.00 O ATOM 289 N ARG 73 17.902 19.186 39.737 1.00 3.00 N ATOM 290 CA ARG 73 17.386 18.643 40.982 1.00 3.00 C ATOM 291 C ARG 73 16.444 17.441 40.860 1.00 3.00 C ATOM 292 O ARG 73 15.648 17.344 39.920 1.00 3.00 O ATOM 293 N LEU 74 16.552 16.534 41.833 1.00 3.00 N ATOM 294 CA LEU 74 15.672 15.372 41.920 1.00 3.00 C ATOM 295 C LEU 74 14.792 15.713 43.117 1.00 3.00 C ATOM 296 O LEU 74 15.299 15.997 44.209 1.00 3.00 O ATOM 297 N GLY 75 13.482 15.707 42.919 1.00 3.00 N ATOM 298 CA GLY 75 12.558 16.062 43.984 1.00 3.00 C ATOM 299 C GLY 75 11.988 14.876 44.766 1.00 3.00 C ATOM 300 O GLY 75 11.273 14.040 44.224 1.00 3.00 O ATOM 301 N ILE 76 12.337 14.840 46.045 1.00 3.00 N ATOM 302 CA ILE 76 11.872 13.849 47.008 1.00 3.00 C ATOM 303 C ILE 76 11.760 12.390 46.601 1.00 3.00 C ATOM 304 O ILE 76 10.654 11.893 46.367 1.00 3.00 O ATOM 305 N GLN 77 12.893 11.684 46.513 1.00 3.00 N ATOM 306 CA GLN 77 12.830 10.267 46.138 1.00 3.00 C ATOM 307 C GLN 77 13.698 9.042 46.312 1.00 3.00 C ATOM 308 O GLN 77 13.559 8.297 47.281 1.00 3.00 O ATOM 309 N ILE 78 14.592 8.820 45.362 1.00 3.00 N ATOM 310 CA ILE 78 15.460 7.653 45.422 1.00 3.00 C ATOM 311 C ILE 78 16.812 7.953 44.806 1.00 3.00 C ATOM 312 O ILE 78 16.902 8.619 43.771 1.00 3.00 O ATOM 313 N VAL 79 17.859 7.479 45.463 1.00 3.00 N ATOM 314 CA VAL 79 19.190 7.642 44.949 1.00 3.00 C ATOM 315 C VAL 79 19.865 6.298 45.125 1.00 3.00 C ATOM 316 O VAL 79 19.772 5.669 46.188 1.00 3.00 O ATOM 317 N ALA 80 20.525 5.847 44.071 1.00 3.00 N ATOM 318 CA ALA 80 21.240 4.585 44.091 1.00 3.00 C ATOM 319 C ALA 80 22.744 4.864 44.014 1.00 3.00 C ATOM 320 O ALA 80 23.177 5.722 43.249 1.00 3.00 O ATOM 321 N THR 81 23.527 4.154 44.820 1.00 3.00 N ATOM 322 CA THR 81 24.986 4.251 44.767 1.00 3.00 C ATOM 323 C THR 81 25.425 2.897 44.230 1.00 3.00 C ATOM 324 O THR 81 25.328 1.885 44.933 1.00 3.00 O ATOM 325 N ARG 82 25.865 2.871 42.970 1.00 3.00 N ATOM 326 CA ARG 82 26.317 1.643 42.308 1.00 3.00 C ATOM 327 C ARG 82 27.857 1.605 42.388 1.00 3.00 C ATOM 328 O ARG 82 28.519 2.448 41.788 1.00 3.00 O ATOM 329 N GLY 83 28.401 0.626 43.118 1.00 3.00 N ATOM 330 CA GLY 83 29.845 0.471 43.358 1.00 3.00 C ATOM 331 C GLY 83 30.226 1.489 44.428 1.00 3.00 C ATOM 332 O GLY 83 31.138 2.307 44.262 1.00 3.00 O ATOM 333 N MET 84 29.494 1.425 45.539 1.00 3.00 N ATOM 334 CA MET 84 29.680 2.341 46.655 1.00 3.00 C ATOM 335 C MET 84 31.099 2.377 47.202 1.00 3.00 C ATOM 336 O MET 84 31.519 3.403 47.729 1.00 3.00 O ATOM 337 N GLU 85 31.838 1.278 47.100 1.00 3.00 N ATOM 338 CA GLU 85 33.208 1.312 47.601 1.00 3.00 C ATOM 339 C GLU 85 34.240 2.197 46.924 1.00 3.00 C ATOM 340 O GLU 85 34.976 2.887 47.591 1.00 3.00 O ATOM 341 N TYR 86 34.301 2.225 45.600 1.00 3.00 N ATOM 342 CA TYR 86 35.279 3.086 44.944 1.00 3.00 C ATOM 343 C TYR 86 35.192 4.559 45.338 1.00 3.00 C ATOM 344 O TYR 86 36.157 5.295 45.156 1.00 3.00 O ATOM 345 N ILE 87 34.034 5.022 45.785 1.00 3.00 N ATOM 346 CA ILE 87 33.969 6.400 46.253 1.00 3.00 C ATOM 347 C ILE 87 34.547 6.324 47.682 1.00 3.00 C ATOM 348 O ILE 87 35.751 6.374 47.838 1.00 3.00 O ATOM 349 N HIS 88 33.708 6.041 48.685 1.00 9.00 N ATOM 350 CA HIS 88 34.153 5.955 50.076 1.00 9.00 C ATOM 351 C HIS 88 35.609 5.531 50.284 1.00 9.00 C ATOM 352 O HIS 88 36.325 6.095 51.106 1.00 9.00 O ATOM 353 N LEU 89 36.054 4.557 49.509 1.00 3.00 N ATOM 354 CA LEU 89 37.408 4.060 49.606 1.00 3.00 C ATOM 355 C LEU 89 38.493 5.003 49.122 1.00 3.00 C ATOM 356 O LEU 89 39.461 5.273 49.822 1.00 3.00 O ATOM 357 N THR 90 38.329 5.465 47.890 1.00 3.00 N ATOM 358 CA THR 90 39.322 6.323 47.280 1.00 3.00 C ATOM 359 C THR 90 39.688 7.581 48.046 1.00 3.00 C ATOM 360 O THR 90 40.821 8.032 47.976 1.00 3.00 O ATOM 361 N LYS 91 38.734 8.128 48.784 1.00 3.00 N ATOM 362 CA LYS 91 38.960 9.350 49.556 1.00 3.00 C ATOM 363 C LYS 91 38.779 10.485 48.567 1.00 3.00 C ATOM 364 O LYS 91 38.578 11.619 48.971 1.00 3.00 O ATOM 365 N SER 92 38.835 10.190 47.277 1.00 3.00 N ATOM 366 CA SER 92 38.678 11.240 46.282 1.00 3.00 C ATOM 367 C SER 92 37.240 11.699 46.038 1.00 3.00 C ATOM 368 O SER 92 37.015 12.835 45.610 1.00 3.00 O ATOM 369 N PRO 93 36.267 10.837 46.321 1.00 3.00 N ATOM 370 CA PRO 93 34.875 11.189 46.068 1.00 3.00 C ATOM 371 C PRO 93 34.001 11.283 47.294 1.00 3.00 C ATOM 372 O PRO 93 32.944 11.910 47.256 1.00 3.00 O ATOM 373 N SER 94 34.429 10.656 48.381 1.00 3.00 N ATOM 374 CA SER 94 33.635 10.649 49.602 1.00 3.00 C ATOM 375 C SER 94 33.033 11.995 49.957 1.00 3.00 C ATOM 376 O SER 94 31.854 12.079 50.311 1.00 3.00 O ATOM 377 N LYS 95 33.824 13.056 49.862 1.00 3.00 N ATOM 378 CA LYS 95 33.300 14.364 50.201 1.00 3.00 C ATOM 379 C LYS 95 32.266 14.853 49.204 1.00 3.00 C ATOM 380 O LYS 95 31.335 15.532 49.575 1.00 3.00 O ATOM 381 N ALA 96 32.460 14.524 47.933 1.00 3.00 N ATOM 382 CA ALA 96 31.531 14.914 46.884 1.00 3.00 C ATOM 383 C ALA 96 30.217 14.172 47.153 1.00 3.00 C ATOM 384 O ALA 96 29.137 14.744 47.012 1.00 3.00 O ATOM 385 N LEU 97 30.300 12.904 47.553 1.00 3.00 N ATOM 386 CA LEU 97 29.073 12.139 47.832 1.00 3.00 C ATOM 387 C LEU 97 28.330 12.759 49.007 1.00 3.00 C ATOM 388 O LEU 97 27.104 12.862 49.023 1.00 3.00 O ATOM 389 N GLN 98 29.090 13.183 50.002 1.00 3.00 N ATOM 390 CA GLN 98 28.489 13.765 51.174 1.00 3.00 C ATOM 391 C GLN 98 27.698 15.018 50.809 1.00 3.00 C ATOM 392 O GLN 98 26.577 15.235 51.299 1.00 3.00 O ATOM 393 N PHE 99 28.288 15.831 49.931 1.00 3.00 N ATOM 394 CA PHE 99 27.684 17.081 49.488 1.00 3.00 C ATOM 395 C PHE 99 26.441 16.832 48.639 1.00 3.00 C ATOM 396 O PHE 99 25.482 17.611 48.674 1.00 3.00 O ATOM 397 N VAL 100 26.455 15.740 47.883 1.00 3.00 N ATOM 398 CA VAL 100 25.313 15.381 47.049 1.00 3.00 C ATOM 399 C VAL 100 24.142 15.065 47.965 1.00 3.00 C ATOM 400 O VAL 100 23.082 15.697 47.889 1.00 3.00 O ATOM 401 N LEU 101 24.342 14.076 48.834 1.00 3.00 N ATOM 402 CA LEU 101 23.313 13.682 49.783 1.00 3.00 C ATOM 403 C LEU 101 22.696 14.886 50.480 1.00 3.00 C ATOM 404 O LEU 101 21.485 14.956 50.638 1.00 3.00 O ATOM 405 N GLU 102 23.523 15.839 50.890 1.00 3.00 N ATOM 406 CA GLU 102 23.020 17.020 51.596 1.00 3.00 C ATOM 407 C GLU 102 22.020 17.868 50.818 1.00 3.00 C ATOM 408 O GLU 102 21.214 18.581 51.417 1.00 3.00 O ATOM 409 N HIS 103 22.046 17.785 49.492 1.00 3.00 N ATOM 410 CA HIS 103 21.112 18.565 48.693 1.00 3.00 C ATOM 411 C HIS 103 19.793 17.850 48.463 1.00 3.00 C ATOM 412 O HIS 103 18.845 18.440 47.961 1.00 3.00 O ATOM 413 N TYR 104 19.705 16.583 48.843 1.00 3.00 N ATOM 414 CA TYR 104 18.473 15.833 48.582 1.00 3.00 C ATOM 415 C TYR 104 17.472 15.893 49.734 1.00 3.00 C ATOM 416 O TYR 104 17.838 16.237 50.853 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 412 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 62.79 62.7 204 99.0 206 ARMSMC SECONDARY STRUCTURE . . 54.59 72.9 140 100.0 140 ARMSMC SURFACE . . . . . . . . 71.24 56.8 118 98.3 120 ARMSMC BURIED . . . . . . . . 48.87 70.9 86 100.0 86 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 81 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 72 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 57 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 61 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 43 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 42 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.29 (Number of atoms: 103) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.29 103 99.0 104 CRMSCA CRN = ALL/NP . . . . . 0.0902 CRMSCA SECONDARY STRUCTURE . . 9.51 70 100.0 70 CRMSCA SURFACE . . . . . . . . 8.76 60 98.4 61 CRMSCA BURIED . . . . . . . . 9.97 43 100.0 43 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.23 412 80.5 512 CRMSMC SECONDARY STRUCTURE . . 9.47 280 80.7 347 CRMSMC SURFACE . . . . . . . . 8.64 240 80.5 298 CRMSMC BURIED . . . . . . . . 9.99 172 80.4 214 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 373 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 303 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 247 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 229 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 144 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.23 412 52.2 789 CRMSALL SECONDARY STRUCTURE . . 9.47 280 53.1 527 CRMSALL SURFACE . . . . . . . . 8.64 240 50.7 473 CRMSALL BURIED . . . . . . . . 9.99 172 54.4 316 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.214 0.397 0.202 103 99.0 104 ERRCA SECONDARY STRUCTURE . . 5.444 0.412 0.211 70 100.0 70 ERRCA SURFACE . . . . . . . . 4.688 0.373 0.193 60 98.4 61 ERRCA BURIED . . . . . . . . 5.949 0.431 0.215 43 100.0 43 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.172 0.395 0.205 412 80.5 512 ERRMC SECONDARY STRUCTURE . . 5.435 0.412 0.213 280 80.7 347 ERRMC SURFACE . . . . . . . . 4.581 0.367 0.196 240 80.5 298 ERRMC BURIED . . . . . . . . 5.995 0.435 0.219 172 80.4 214 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 373 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 303 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 247 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 229 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 144 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.172 0.395 0.205 412 52.2 789 ERRALL SECONDARY STRUCTURE . . 5.435 0.412 0.213 280 53.1 527 ERRALL SURFACE . . . . . . . . 4.581 0.367 0.196 240 50.7 473 ERRALL BURIED . . . . . . . . 5.995 0.435 0.219 172 54.4 316 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 1 8 24 75 103 104 DISTCA CA (P) 0.96 0.96 7.69 23.08 72.12 104 DISTCA CA (RMS) 0.61 0.61 2.58 3.64 6.40 DISTCA ALL (N) 2 11 33 108 301 412 789 DISTALL ALL (P) 0.25 1.39 4.18 13.69 38.15 789 DISTALL ALL (RMS) 0.71 1.48 2.34 3.62 6.39 DISTALL END of the results output