####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 99 ( 396), selected 99 , name T0580AL396_1-D1 # Molecule2: number of CA atoms 104 ( 789), selected 99 , name T0580-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0580AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 99 3 - 105 1.64 1.64 LCS_AVERAGE: 95.19 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 99 3 - 105 1.64 1.64 LCS_AVERAGE: 95.19 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 54 25 - 80 0.99 1.68 LCS_AVERAGE: 35.71 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 99 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 3 E 3 10 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 4 L 4 10 99 99 21 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 5 K 5 10 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 6 V 6 10 99 99 18 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 7 L 7 10 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 8 V 8 10 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 9 L 9 10 99 99 18 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT C 10 C 10 10 99 99 18 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 11 A 11 10 99 99 16 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 12 G 12 10 99 99 4 12 28 64 71 87 95 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 13 S 13 3 99 99 3 3 30 59 82 92 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 14 G 14 29 99 99 4 19 41 77 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 15 T 15 29 99 99 4 23 57 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 16 S 16 29 99 99 9 29 64 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 17 A 17 29 99 99 6 50 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Q 18 Q 18 29 99 99 7 29 51 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 19 L 19 29 99 99 11 22 47 79 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 20 A 20 29 99 99 11 29 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 21 N 21 29 99 99 9 29 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 22 A 22 29 99 99 10 26 60 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 23 I 23 45 99 99 11 32 65 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 24 N 24 49 99 99 11 51 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 25 E 25 54 99 99 11 51 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 26 G 26 54 99 99 11 51 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 27 A 27 54 99 99 11 52 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 28 N 28 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 29 L 29 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 30 T 30 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 31 E 31 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 32 V 32 54 99 99 11 51 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT R 33 R 33 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 34 V 34 54 99 99 15 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 35 I 35 54 99 99 21 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 36 A 36 54 99 99 15 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 37 N 37 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 38 S 38 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 39 G 39 54 99 99 18 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 40 A 40 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Y 41 Y 41 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 42 G 42 54 99 99 20 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 43 A 43 54 99 99 3 15 49 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT H 44 H 44 54 99 99 3 6 26 67 87 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Y 45 Y 45 54 99 99 3 25 62 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 46 D 46 54 99 99 3 29 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 47 I 47 54 99 99 3 26 62 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT M 48 M 48 54 99 99 9 43 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 49 G 49 54 99 99 4 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 50 V 50 54 99 99 12 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Y 51 Y 51 54 99 99 16 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 52 D 52 54 99 99 18 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 53 L 53 54 99 99 21 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 54 I 54 54 99 99 16 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 55 I 55 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 56 L 56 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 57 A 57 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT P 58 P 58 54 99 99 22 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Q 59 Q 59 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 60 V 60 54 99 99 16 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT R 61 R 61 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 62 S 62 54 99 99 13 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Y 63 Y 63 54 99 99 21 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Y 64 Y 64 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT R 65 R 65 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 66 E 66 54 99 99 21 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT M 67 M 67 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 68 K 68 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 69 V 69 54 99 99 21 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 70 D 70 54 99 99 21 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 71 A 71 54 99 99 19 52 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 72 E 72 54 99 99 12 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 75 G 75 54 99 99 7 48 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 76 I 76 54 99 99 12 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Q 77 Q 77 54 99 99 12 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 78 I 78 54 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 79 V 79 54 99 99 12 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 80 A 80 54 99 99 10 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 81 T 81 35 99 99 5 10 48 73 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT R 82 R 82 9 99 99 8 10 11 31 64 87 95 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 83 G 83 9 99 99 8 26 62 77 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT M 84 M 84 9 99 99 14 50 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 85 E 85 9 99 99 8 10 19 67 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Y 86 Y 86 9 99 99 8 29 66 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 87 I 87 9 99 99 8 10 45 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT H 88 H 88 9 99 99 8 16 33 66 85 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 89 L 89 9 99 99 8 10 23 31 39 82 94 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 92 S 92 14 99 99 13 15 41 65 84 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT P 93 P 93 14 99 99 13 15 36 65 84 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 94 S 94 14 99 99 13 15 45 76 87 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 95 K 95 14 99 99 13 20 67 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 96 A 96 14 99 99 13 14 41 75 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 97 L 97 14 99 99 13 15 45 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Q 98 Q 98 14 99 99 13 47 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT F 99 F 99 14 99 99 13 35 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 100 V 100 14 99 99 13 47 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 101 L 101 14 99 99 13 54 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 102 E 102 14 99 99 21 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT H 103 H 103 14 99 99 21 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Y 104 Y 104 14 99 99 21 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Q 105 Q 105 14 99 99 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 LCS_AVERAGE LCS_A: 75.37 ( 35.71 95.19 95.19 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 23 55 68 80 88 94 96 98 99 99 99 99 99 99 99 99 99 99 99 99 GDT PERCENT_AT 22.12 52.88 65.38 76.92 84.62 90.38 92.31 94.23 95.19 95.19 95.19 95.19 95.19 95.19 95.19 95.19 95.19 95.19 95.19 95.19 GDT RMS_LOCAL 0.37 0.67 0.82 1.06 1.24 1.41 1.48 1.58 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 GDT RMS_ALL_AT 1.70 1.70 1.68 1.65 1.65 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 3 E 3 0.604 5 0.080 0.080 0.929 90.476 40.212 LGA L 4 L 4 0.750 4 0.065 0.065 0.750 97.619 48.810 LGA K 5 K 5 0.089 5 0.033 0.033 0.378 100.000 44.444 LGA V 6 V 6 0.701 3 0.075 0.075 0.839 90.476 51.701 LGA L 7 L 7 0.690 4 0.015 0.015 0.690 90.476 45.238 LGA V 8 V 8 0.589 3 0.049 0.049 1.054 88.214 50.408 LGA L 9 L 9 0.889 4 0.034 0.034 1.141 88.214 44.107 LGA C 10 C 10 0.837 2 0.104 0.104 1.376 88.214 58.810 LGA A 11 A 11 0.751 1 0.138 0.138 2.291 79.643 63.714 LGA G 12 G 12 3.999 0 0.384 0.384 5.325 44.167 44.167 LGA S 13 S 13 3.474 2 0.186 0.186 4.222 52.262 34.841 LGA G 14 G 14 2.419 0 0.260 0.260 2.419 66.786 66.786 LGA T 15 T 15 2.142 3 0.037 0.037 2.234 68.810 39.320 LGA S 16 S 16 1.754 2 0.073 0.073 1.950 75.000 50.000 LGA A 17 A 17 1.141 1 0.022 0.022 1.559 77.143 61.714 LGA Q 18 Q 18 2.273 5 0.018 0.018 2.273 66.786 29.683 LGA L 19 L 19 2.297 4 0.024 0.024 2.297 64.762 32.381 LGA A 20 A 20 1.571 1 0.012 0.012 1.828 77.143 61.714 LGA N 21 N 21 1.553 4 0.019 0.019 1.733 72.857 36.429 LGA A 22 A 22 2.117 1 0.048 0.048 2.117 70.833 56.667 LGA I 23 I 23 1.811 4 0.030 0.030 1.895 77.143 38.571 LGA N 24 N 24 1.064 4 0.023 0.023 1.348 85.952 42.976 LGA E 25 E 25 1.073 5 0.036 0.036 1.087 83.690 37.196 LGA G 26 G 26 1.045 0 0.016 0.016 1.120 85.952 85.952 LGA A 27 A 27 0.781 1 0.055 0.055 0.879 92.857 74.286 LGA N 28 N 28 0.673 4 0.028 0.028 0.751 90.476 45.238 LGA L 29 L 29 0.675 4 0.036 0.036 0.675 90.476 45.238 LGA T 30 T 30 0.437 3 0.150 0.150 1.088 92.976 53.129 LGA E 31 E 31 0.670 5 0.076 0.076 1.152 90.595 40.265 LGA V 32 V 32 1.179 3 0.090 0.090 1.179 88.214 50.408 LGA R 33 R 33 0.286 7 0.079 0.079 0.680 97.619 35.498 LGA V 34 V 34 0.691 3 0.075 0.075 0.983 92.857 53.061 LGA I 35 I 35 1.135 4 0.051 0.051 1.135 90.595 45.298 LGA A 36 A 36 0.669 1 0.028 0.028 0.881 92.857 74.286 LGA N 37 N 37 0.221 4 0.068 0.068 0.587 97.619 48.810 LGA S 38 S 38 0.272 2 0.046 0.046 0.300 100.000 66.667 LGA G 39 G 39 0.808 0 0.035 0.035 0.808 90.476 90.476 LGA A 40 A 40 0.504 1 0.108 0.108 0.855 92.857 74.286 LGA Y 41 Y 41 0.265 8 0.654 0.654 3.247 82.857 27.619 LGA G 42 G 42 0.715 0 0.017 0.017 1.486 83.690 83.690 LGA A 43 A 43 2.325 1 0.030 0.030 3.413 63.333 50.667 LGA H 44 H 44 2.996 6 0.186 0.186 2.996 59.048 23.619 LGA Y 45 Y 45 2.140 8 0.018 0.018 2.535 69.048 23.016 LGA D 46 D 46 1.723 4 0.150 0.150 1.813 72.857 36.429 LGA I 47 I 47 1.844 4 0.104 0.104 1.844 75.000 37.500 LGA M 48 M 48 1.418 4 0.020 0.020 1.703 81.548 40.774 LGA G 49 G 49 0.934 0 0.041 0.041 1.098 85.952 85.952 LGA V 50 V 50 1.029 3 0.123 0.123 1.029 88.214 50.408 LGA Y 51 Y 51 0.610 8 0.034 0.034 0.803 90.476 30.159 LGA D 52 D 52 0.773 4 0.050 0.050 1.119 88.214 44.107 LGA L 53 L 53 0.693 4 0.042 0.042 0.701 90.476 45.238 LGA I 54 I 54 0.975 4 0.038 0.038 0.975 90.476 45.238 LGA I 55 I 55 0.668 4 0.036 0.036 0.991 90.476 45.238 LGA L 56 L 56 0.562 4 0.061 0.061 0.562 92.857 46.429 LGA A 57 A 57 0.677 1 0.050 0.050 0.677 90.476 72.381 LGA P 58 P 58 0.976 3 0.073 0.073 0.976 90.476 51.701 LGA Q 59 Q 59 0.504 5 0.084 0.084 1.036 88.214 39.206 LGA V 60 V 60 0.754 3 0.029 0.029 0.754 90.476 51.701 LGA R 61 R 61 0.622 7 0.043 0.043 0.700 90.476 32.900 LGA S 62 S 62 0.999 2 0.012 0.012 0.999 90.476 60.317 LGA Y 63 Y 63 0.542 8 0.047 0.047 0.686 92.857 30.952 LGA Y 64 Y 64 0.433 8 0.034 0.034 0.586 97.619 32.540 LGA R 65 R 65 0.624 7 0.035 0.035 0.762 90.476 32.900 LGA E 66 E 66 0.555 5 0.014 0.014 0.745 92.857 41.270 LGA M 67 M 67 0.458 4 0.019 0.019 0.698 95.238 47.619 LGA K 68 K 68 0.707 5 0.016 0.016 0.884 90.476 40.212 LGA V 69 V 69 0.822 3 0.087 0.087 1.363 88.214 50.408 LGA D 70 D 70 0.932 4 0.024 0.024 1.314 85.952 42.976 LGA A 71 A 71 1.283 1 0.409 0.409 1.830 81.548 65.238 LGA E 72 E 72 0.516 5 0.089 0.089 2.405 79.643 35.397 LGA G 75 G 75 1.577 0 0.037 0.037 2.071 72.976 72.976 LGA I 76 I 76 1.095 4 0.035 0.035 1.191 85.952 42.976 LGA Q 77 Q 77 1.097 5 0.036 0.036 1.109 85.952 38.201 LGA I 78 I 78 0.552 4 0.020 0.020 1.033 88.214 44.107 LGA V 79 V 79 0.799 3 0.095 0.095 0.799 95.238 54.422 LGA A 80 A 80 0.775 1 0.042 0.042 1.382 88.333 70.667 LGA T 81 T 81 2.648 3 0.084 0.084 3.035 59.286 33.878 LGA R 82 R 82 4.219 7 0.170 0.170 4.219 46.905 17.056 LGA G 83 G 83 2.437 0 0.099 0.099 3.108 69.524 69.524 LGA M 84 M 84 1.663 4 0.024 0.024 2.191 72.976 36.488 LGA E 85 E 85 3.092 5 0.073 0.073 3.092 55.476 24.656 LGA Y 86 Y 86 1.795 8 0.032 0.032 2.738 68.929 22.976 LGA I 87 I 87 2.035 4 0.029 0.029 3.675 61.667 30.833 LGA H 88 H 88 3.280 6 0.181 0.181 3.991 50.357 20.143 LGA L 89 L 89 4.656 4 0.405 0.405 4.656 43.929 21.964 LGA S 92 S 92 3.310 2 0.056 0.056 3.310 50.000 33.333 LGA P 93 P 93 3.187 3 0.032 0.032 3.285 53.571 30.612 LGA S 94 S 94 2.591 2 0.032 0.032 2.835 60.952 40.635 LGA K 95 K 95 1.974 5 0.036 0.036 2.218 68.810 30.582 LGA A 96 A 96 2.686 1 0.038 0.038 2.686 62.857 50.286 LGA L 97 L 97 2.111 4 0.032 0.032 2.354 68.810 34.405 LGA Q 98 Q 98 1.331 5 0.010 0.010 1.691 81.548 36.243 LGA F 99 F 99 1.667 7 0.044 0.044 1.667 72.857 26.494 LGA V 100 V 100 1.455 3 0.055 0.055 1.540 79.286 45.306 LGA L 101 L 101 0.969 4 0.076 0.076 1.290 83.690 41.845 LGA E 102 E 102 1.268 5 0.132 0.132 2.063 77.262 34.339 LGA H 103 H 103 1.326 6 0.238 0.238 2.130 77.262 30.905 LGA Y 104 Y 104 0.988 8 0.511 0.511 2.796 77.619 25.873 LGA Q 105 Q 105 0.349 6 0.037 0.037 2.247 84.167 33.667 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 99 396 396 100.00 755 396 52.45 104 SUMMARY(RMSD_GDC): 1.641 1.614 1.614 76.611 43.288 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 99 104 4.0 98 1.58 79.808 87.142 5.823 LGA_LOCAL RMSD: 1.583 Number of atoms: 98 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.643 Number of assigned atoms: 99 Std_ASGN_ATOMS RMSD: 1.641 Standard rmsd on all 99 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.873118 * X + -0.338251 * Y + -0.351072 * Z + 7.455952 Y_new = 0.171705 * X + -0.460621 * Y + 0.870830 * Z + -12.751501 Z_new = -0.456271 * X + -0.820618 * Y + -0.344097 * Z + 80.626762 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.194180 0.473800 -1.967842 [DEG: 11.1257 27.1467 -112.7490 ] ZXZ: -2.758376 1.922073 -2.634148 [DEG: -158.0433 110.1267 -150.9256 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0580AL396_1-D1 REMARK 2: T0580-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0580AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 99 104 4.0 98 1.58 87.142 1.64 REMARK ---------------------------------------------------------- MOLECULE T0580AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1iib_A ATOM 1 N GLU 3 7.033 13.069 25.888 1.00 0.00 N ATOM 2 CA GLU 3 8.251 12.261 26.216 1.00 0.00 C ATOM 3 C GLU 3 9.223 13.034 27.094 1.00 0.00 C ATOM 4 O GLU 3 9.716 14.097 26.716 1.00 0.00 O ATOM 5 N LEU 4 9.494 12.488 28.268 1.00 0.00 N ATOM 6 CA LEU 4 10.395 13.124 29.210 1.00 0.00 C ATOM 7 C LEU 4 11.854 12.786 28.908 1.00 0.00 C ATOM 8 O LEU 4 12.168 11.685 28.460 1.00 0.00 O ATOM 9 N LYS 5 12.738 13.743 29.164 1.00 0.00 N ATOM 10 CA LYS 5 14.164 13.581 28.915 1.00 0.00 C ATOM 11 C LYS 5 14.931 13.233 30.168 1.00 0.00 C ATOM 12 O LYS 5 14.948 14.008 31.130 1.00 0.00 O ATOM 13 N VAL 6 15.529 12.049 30.168 1.00 0.00 N ATOM 14 CA VAL 6 16.336 11.597 31.287 1.00 0.00 C ATOM 15 C VAL 6 17.790 11.651 30.799 1.00 0.00 C ATOM 16 O VAL 6 18.163 10.920 29.872 1.00 0.00 O ATOM 17 N LEU 7 18.588 12.535 31.383 1.00 0.00 N ATOM 18 CA LEU 7 19.984 12.675 31.009 1.00 0.00 C ATOM 19 C LEU 7 20.903 12.203 32.122 1.00 0.00 C ATOM 20 O LEU 7 20.746 12.625 33.271 1.00 0.00 O ATOM 21 N VAL 8 21.841 11.314 31.782 1.00 0.00 N ATOM 22 CA VAL 8 22.827 10.780 32.734 1.00 0.00 C ATOM 23 C VAL 8 24.161 11.464 32.445 1.00 0.00 C ATOM 24 O VAL 8 24.535 11.624 31.284 1.00 0.00 O ATOM 25 N LEU 9 24.860 11.890 33.495 1.00 0.00 N ATOM 26 CA LEU 9 26.159 12.563 33.356 1.00 0.00 C ATOM 27 C LEU 9 27.179 11.815 34.178 1.00 0.00 C ATOM 28 O LEU 9 26.953 11.565 35.366 1.00 0.00 O ATOM 29 N CYS 10 28.298 11.445 33.562 1.00 0.00 N ATOM 30 CA CYS 10 29.327 10.704 34.278 1.00 0.00 C ATOM 31 C CYS 10 30.690 10.855 33.612 1.00 0.00 C ATOM 32 O CYS 10 30.779 11.248 32.441 1.00 0.00 O ATOM 33 N ALA 11 31.746 10.574 34.377 1.00 0.00 N ATOM 34 CA ALA 11 33.109 10.617 33.858 1.00 0.00 C ATOM 35 C ALA 11 33.458 9.223 33.284 1.00 0.00 C ATOM 36 O ALA 11 34.418 9.078 32.524 1.00 0.00 O ATOM 37 N GLY 12 32.632 8.225 33.612 1.00 0.00 N ATOM 38 CA GLY 12 32.803 6.838 33.159 1.00 0.00 C ATOM 39 C GLY 12 31.935 6.559 31.925 1.00 0.00 C ATOM 40 O GLY 12 30.855 5.973 32.024 1.00 0.00 O ATOM 41 N SER 13 32.421 6.983 30.765 1.00 0.00 N ATOM 42 CA SER 13 31.697 6.817 29.517 1.00 0.00 C ATOM 43 C SER 13 31.111 5.466 29.164 1.00 0.00 C ATOM 44 O SER 13 29.914 5.375 28.906 1.00 0.00 O ATOM 45 N GLY 14 31.928 4.419 29.156 1.00 0.00 N ATOM 46 CA GLY 14 31.449 3.086 28.785 1.00 0.00 C ATOM 47 C GLY 14 30.348 2.495 29.668 1.00 0.00 C ATOM 48 O GLY 14 29.303 2.087 29.146 1.00 0.00 O ATOM 49 N THR 15 30.566 2.424 30.982 1.00 0.00 N ATOM 50 CA THR 15 29.546 1.845 31.863 1.00 0.00 C ATOM 51 C THR 15 28.232 2.628 31.854 1.00 0.00 C ATOM 52 O THR 15 27.148 2.041 31.914 1.00 0.00 O ATOM 53 N SER 16 28.326 3.945 31.696 1.00 0.00 N ATOM 54 CA SER 16 27.143 4.798 31.641 1.00 0.00 C ATOM 55 C SER 16 26.366 4.518 30.354 1.00 0.00 C ATOM 56 O SER 16 25.143 4.359 30.411 1.00 0.00 O ATOM 57 N ALA 17 27.068 4.455 29.210 1.00 0.00 N ATOM 58 CA ALA 17 26.432 4.160 27.912 1.00 0.00 C ATOM 59 C ALA 17 25.793 2.766 27.908 1.00 0.00 C ATOM 60 O ALA 17 24.761 2.538 27.265 1.00 0.00 O ATOM 61 N GLN 18 26.425 1.827 28.597 1.00 0.00 N ATOM 62 CA GLN 18 25.894 0.482 28.688 1.00 0.00 C ATOM 63 C GLN 18 24.599 0.508 29.526 1.00 0.00 C ATOM 64 O GLN 18 23.618 -0.168 29.188 1.00 0.00 O ATOM 65 N LEU 19 24.587 1.294 30.603 1.00 0.00 N ATOM 66 CA LEU 19 23.386 1.430 31.451 1.00 0.00 C ATOM 67 C LEU 19 22.254 2.094 30.636 1.00 0.00 C ATOM 68 O LEU 19 21.110 1.641 30.673 1.00 0.00 O ATOM 69 N ALA 20 22.593 3.130 29.867 1.00 0.00 N ATOM 70 CA ALA 20 21.605 3.812 29.022 1.00 0.00 C ATOM 71 C ALA 20 20.962 2.839 28.023 1.00 0.00 C ATOM 72 O ALA 20 19.743 2.843 27.859 1.00 0.00 O ATOM 73 N ASN 21 21.754 1.978 27.380 1.00 0.00 N ATOM 74 CA ASN 21 21.168 1.030 26.430 1.00 0.00 C ATOM 75 C ASN 21 20.187 0.055 27.116 1.00 0.00 C ATOM 76 O ASN 21 19.138 -0.266 26.547 1.00 0.00 O ATOM 77 N ALA 22 20.496 -0.390 28.335 1.00 0.00 N ATOM 78 CA ALA 22 19.588 -1.290 29.062 1.00 0.00 C ATOM 79 C ALA 22 18.329 -0.537 29.533 1.00 0.00 C ATOM 80 O ALA 22 17.238 -1.099 29.571 1.00 0.00 O ATOM 81 N ILE 23 18.470 0.728 29.899 1.00 0.00 N ATOM 82 CA ILE 23 17.299 1.497 30.321 1.00 0.00 C ATOM 83 C ILE 23 16.359 1.678 29.116 1.00 0.00 C ATOM 84 O ILE 23 15.147 1.571 29.261 1.00 0.00 O ATOM 85 N ASN 24 16.909 1.963 27.934 1.00 0.00 N ATOM 86 CA ASN 24 16.095 2.146 26.732 1.00 0.00 C ATOM 87 C ASN 24 15.311 0.877 26.403 1.00 0.00 C ATOM 88 O ASN 24 14.176 0.959 25.917 1.00 0.00 O ATOM 89 N GLU 25 15.930 -0.284 26.627 1.00 0.00 N ATOM 90 CA GLU 25 15.285 -1.569 26.354 1.00 0.00 C ATOM 91 C GLU 25 14.067 -1.719 27.263 1.00 0.00 C ATOM 92 O GLU 25 12.978 -2.069 26.807 1.00 0.00 O ATOM 93 N GLY 26 14.251 -1.395 28.537 1.00 0.00 N ATOM 94 CA GLY 26 13.190 -1.478 29.525 1.00 0.00 C ATOM 95 C GLY 26 12.071 -0.501 29.243 1.00 0.00 C ATOM 96 O GLY 26 10.897 -0.854 29.352 1.00 0.00 O ATOM 97 N ALA 27 12.431 0.724 28.869 1.00 0.00 N ATOM 98 CA ALA 27 11.434 1.740 28.569 1.00 0.00 C ATOM 99 C ALA 27 10.561 1.299 27.394 1.00 0.00 C ATOM 100 O ALA 27 9.374 1.618 27.344 1.00 0.00 O ATOM 101 N ASN 28 11.143 0.561 26.453 1.00 0.00 N ATOM 102 CA ASN 28 10.409 0.083 25.282 1.00 0.00 C ATOM 103 C ASN 28 9.480 -1.059 25.677 1.00 0.00 C ATOM 104 O ASN 28 8.311 -1.091 25.293 1.00 0.00 O ATOM 105 N LEU 29 10.005 -1.971 26.485 1.00 0.00 N ATOM 106 CA LEU 29 9.250 -3.117 26.954 1.00 0.00 C ATOM 107 C LEU 29 7.979 -2.691 27.703 1.00 0.00 C ATOM 108 O LEU 29 6.925 -3.311 27.533 1.00 0.00 O ATOM 109 N THR 30 8.066 -1.639 28.522 1.00 0.00 N ATOM 110 CA THR 30 6.895 -1.154 29.284 1.00 0.00 C ATOM 111 C THR 30 6.231 0.116 28.756 1.00 0.00 C ATOM 112 O THR 30 5.448 0.747 29.468 1.00 0.00 O ATOM 113 N GLU 31 6.557 0.498 27.523 1.00 0.00 N ATOM 114 CA GLU 31 5.987 1.687 26.879 1.00 0.00 C ATOM 115 C GLU 31 6.084 2.995 27.671 1.00 0.00 C ATOM 116 O GLU 31 5.162 3.801 27.666 1.00 0.00 O ATOM 117 N VAL 32 7.213 3.210 28.338 1.00 0.00 N ATOM 118 CA VAL 32 7.434 4.432 29.105 1.00 0.00 C ATOM 119 C VAL 32 7.878 5.478 28.083 1.00 0.00 C ATOM 120 O VAL 32 8.817 5.251 27.323 1.00 0.00 O ATOM 121 N ARG 33 7.169 6.615 28.007 1.00 0.00 N ATOM 122 CA ARG 33 7.478 7.702 27.069 1.00 0.00 C ATOM 123 C ARG 33 8.642 8.598 27.502 1.00 0.00 C ATOM 124 O ARG 33 8.456 9.764 27.892 1.00 0.00 O ATOM 125 N VAL 34 9.850 8.059 27.386 1.00 0.00 N ATOM 126 CA VAL 34 11.050 8.787 27.764 1.00 0.00 C ATOM 127 C VAL 34 12.162 8.688 26.728 1.00 0.00 C ATOM 128 O VAL 34 12.202 7.755 25.915 1.00 0.00 O ATOM 129 N ILE 35 13.025 9.697 26.735 1.00 0.00 N ATOM 130 CA ILE 35 14.204 9.772 25.884 1.00 0.00 C ATOM 131 C ILE 35 15.358 9.752 26.909 1.00 0.00 C ATOM 132 O ILE 35 15.359 10.545 27.863 1.00 0.00 O ATOM 133 N ALA 36 16.297 8.821 26.728 1.00 0.00 N ATOM 134 CA ALA 36 17.447 8.636 27.631 1.00 0.00 C ATOM 135 C ALA 36 18.778 8.856 26.880 1.00 0.00 C ATOM 136 O ALA 36 19.005 8.238 25.843 1.00 0.00 O ATOM 137 N ASN 37 19.640 9.735 27.398 1.00 0.00 N ATOM 138 CA ASN 37 20.937 10.049 26.779 1.00 0.00 C ATOM 139 C ASN 37 22.019 10.143 27.862 1.00 0.00 C ATOM 140 O ASN 37 21.730 10.534 28.994 1.00 0.00 O ATOM 141 N SER 38 23.243 9.729 27.520 1.00 0.00 N ATOM 142 CA SER 38 24.399 9.793 28.430 1.00 0.00 C ATOM 143 C SER 38 25.331 10.896 27.895 1.00 0.00 C ATOM 144 O SER 38 25.480 11.051 26.683 1.00 0.00 O ATOM 145 N GLY 39 25.932 11.664 28.789 1.00 0.00 N ATOM 146 CA GLY 39 26.845 12.735 28.410 1.00 0.00 C ATOM 147 C GLY 39 27.966 12.790 29.435 1.00 0.00 C ATOM 148 O GLY 39 27.864 12.197 30.525 1.00 0.00 O ATOM 149 N ALA 40 29.086 13.437 29.069 1.00 0.00 N ATOM 150 CA ALA 40 30.204 13.562 30.003 1.00 0.00 C ATOM 151 C ALA 40 29.778 14.660 30.995 1.00 0.00 C ATOM 152 O ALA 40 28.975 15.526 30.653 1.00 0.00 O ATOM 153 N TYR 41 30.350 14.648 32.189 1.00 0.00 N ATOM 154 CA TYR 41 30.035 15.634 33.219 1.00 0.00 C ATOM 155 C TYR 41 30.275 17.080 32.790 1.00 0.00 C ATOM 156 O TYR 41 29.674 17.996 33.348 1.00 0.00 O ATOM 157 N GLY 42 31.137 17.298 31.796 1.00 0.00 N ATOM 158 CA GLY 42 31.428 18.653 31.335 1.00 0.00 C ATOM 159 C GLY 42 30.239 19.359 30.697 1.00 0.00 C ATOM 160 O GLY 42 30.233 20.580 30.582 1.00 0.00 O ATOM 161 N ALA 43 29.249 18.588 30.253 1.00 0.00 N ATOM 162 CA ALA 43 28.052 19.149 29.630 1.00 0.00 C ATOM 163 C ALA 43 26.842 19.257 30.581 1.00 0.00 C ATOM 164 O ALA 43 25.767 19.647 30.136 1.00 0.00 O ATOM 165 N HIS 44 27.010 18.940 31.870 1.00 0.00 N ATOM 166 CA HIS 44 25.899 18.972 32.842 1.00 0.00 C ATOM 167 C HIS 44 25.147 20.292 32.865 1.00 0.00 C ATOM 168 O HIS 44 23.928 20.313 32.958 1.00 0.00 O ATOM 169 N TYR 45 25.873 21.386 32.701 1.00 0.00 N ATOM 170 CA TYR 45 25.240 22.686 32.707 1.00 0.00 C ATOM 171 C TYR 45 24.622 23.053 31.374 1.00 0.00 C ATOM 172 O TYR 45 23.585 23.719 31.334 1.00 0.00 O ATOM 173 N ASP 46 25.250 22.640 30.280 1.00 0.00 N ATOM 174 CA ASP 46 24.728 22.964 28.962 1.00 0.00 C ATOM 175 C ASP 46 23.542 22.064 28.563 1.00 0.00 C ATOM 176 O ASP 46 22.477 22.556 28.175 1.00 0.00 O ATOM 177 N ILE 47 23.714 20.750 28.707 1.00 0.00 N ATOM 178 CA ILE 47 22.675 19.786 28.362 1.00 0.00 C ATOM 179 C ILE 47 21.586 19.641 29.423 1.00 0.00 C ATOM 180 O ILE 47 20.430 19.404 29.087 1.00 0.00 O ATOM 181 N MET 48 21.963 19.762 30.696 1.00 0.00 N ATOM 182 CA MET 48 21.017 19.630 31.800 1.00 0.00 C ATOM 183 C MET 48 19.804 20.546 31.714 1.00 0.00 C ATOM 184 O MET 48 18.713 20.175 32.154 1.00 0.00 O ATOM 185 N GLY 49 19.977 21.725 31.121 1.00 0.00 N ATOM 186 CA GLY 49 18.883 22.681 30.972 1.00 0.00 C ATOM 187 C GLY 49 17.682 22.115 30.213 1.00 0.00 C ATOM 188 O GLY 49 16.567 22.635 30.337 1.00 0.00 O ATOM 189 N VAL 50 17.906 21.082 29.409 1.00 0.00 N ATOM 190 CA VAL 50 16.841 20.489 28.609 1.00 0.00 C ATOM 191 C VAL 50 16.334 19.171 29.143 1.00 0.00 C ATOM 192 O VAL 50 15.479 18.533 28.524 1.00 0.00 O ATOM 193 N TYR 51 16.864 18.738 30.275 1.00 0.00 N ATOM 194 CA TYR 51 16.427 17.466 30.821 1.00 0.00 C ATOM 195 C TYR 51 15.230 17.667 31.728 1.00 0.00 C ATOM 196 O TYR 51 14.973 18.763 32.232 1.00 0.00 O ATOM 197 N ASP 52 14.472 16.602 31.902 1.00 0.00 N ATOM 198 CA ASP 52 13.349 16.644 32.790 1.00 0.00 C ATOM 199 C ASP 52 13.843 16.140 34.146 1.00 0.00 C ATOM 200 O ASP 52 13.307 16.522 35.190 1.00 0.00 O ATOM 201 N LEU 53 14.896 15.319 34.127 1.00 0.00 N ATOM 202 CA LEU 53 15.523 14.826 35.353 1.00 0.00 C ATOM 203 C LEU 53 17.012 14.611 35.045 1.00 0.00 C ATOM 204 O LEU 53 17.365 14.136 33.972 1.00 0.00 O ATOM 205 N ILE 54 17.871 15.064 35.951 1.00 0.00 N ATOM 206 CA ILE 54 19.315 14.945 35.803 1.00 0.00 C ATOM 207 C ILE 54 19.838 13.879 36.781 1.00 0.00 C ATOM 208 O ILE 54 19.581 13.948 37.983 1.00 0.00 O ATOM 209 N ILE 55 20.495 12.855 36.242 1.00 0.00 N ATOM 210 CA ILE 55 21.049 11.786 37.052 1.00 0.00 C ATOM 211 C ILE 55 22.582 11.834 36.978 1.00 0.00 C ATOM 212 O ILE 55 23.150 11.954 35.881 1.00 0.00 O ATOM 213 N LEU 56 23.252 11.749 38.127 1.00 0.00 N ATOM 214 CA LEU 56 24.723 11.765 38.161 1.00 0.00 C ATOM 215 C LEU 56 25.259 10.377 38.449 1.00 0.00 C ATOM 216 O LEU 56 24.714 9.655 39.295 1.00 0.00 O ATOM 217 N ALA 57 26.322 9.991 37.742 1.00 0.00 N ATOM 218 CA ALA 57 26.932 8.690 37.973 1.00 0.00 C ATOM 219 C ALA 57 27.576 8.714 39.346 1.00 0.00 C ATOM 220 O ALA 57 28.004 9.777 39.799 1.00 0.00 O ATOM 221 N PRO 58 27.704 7.570 40.026 1.00 0.00 N ATOM 222 CA PRO 58 28.325 7.638 41.357 1.00 0.00 C ATOM 223 C PRO 58 29.760 8.183 41.394 1.00 0.00 C ATOM 224 O PRO 58 30.169 8.756 42.394 1.00 0.00 O ATOM 225 N GLN 59 30.497 8.077 40.290 1.00 0.00 N ATOM 226 CA GLN 59 31.868 8.597 40.241 1.00 0.00 C ATOM 227 C GLN 59 31.892 10.114 40.428 1.00 0.00 C ATOM 228 O GLN 59 32.919 10.672 40.797 1.00 0.00 O ATOM 229 N VAL 60 30.788 10.793 40.130 1.00 0.00 N ATOM 230 CA VAL 60 30.751 12.237 40.306 1.00 0.00 C ATOM 231 C VAL 60 29.748 12.711 41.359 1.00 0.00 C ATOM 232 O VAL 60 29.336 13.877 41.364 1.00 0.00 O ATOM 233 N ARG 61 29.430 11.834 42.308 1.00 0.00 N ATOM 234 CA ARG 61 28.498 12.177 43.378 1.00 0.00 C ATOM 235 C ARG 61 28.946 13.429 44.139 1.00 0.00 C ATOM 236 O ARG 61 28.124 14.269 44.487 1.00 0.00 O ATOM 237 N SER 62 30.247 13.568 44.378 1.00 0.00 N ATOM 238 CA SER 62 30.781 14.734 45.088 1.00 0.00 C ATOM 239 C SER 62 30.411 16.064 44.417 1.00 0.00 C ATOM 240 O SER 62 30.528 17.136 45.028 1.00 0.00 O ATOM 241 N TYR 63 30.020 16.001 43.143 1.00 0.00 N ATOM 242 CA TYR 63 29.636 17.194 42.389 1.00 0.00 C ATOM 243 C TYR 63 28.156 17.601 42.549 1.00 0.00 C ATOM 244 O TYR 63 27.745 18.646 42.027 1.00 0.00 O ATOM 245 N TYR 64 27.370 16.807 43.278 1.00 0.00 N ATOM 246 CA TYR 64 25.944 17.091 43.459 1.00 0.00 C ATOM 247 C TYR 64 25.589 18.549 43.828 1.00 0.00 C ATOM 248 O TYR 64 24.791 19.191 43.114 1.00 0.00 O ATOM 249 N ARG 65 26.201 19.111 44.899 1.00 0.00 N ATOM 250 CA ARG 65 25.874 20.500 45.260 1.00 0.00 C ATOM 251 C ARG 65 26.119 21.510 44.144 1.00 0.00 C ATOM 252 O ARG 65 25.319 22.419 43.961 1.00 0.00 O ATOM 253 N GLU 66 27.197 21.343 43.380 1.00 0.00 N ATOM 254 CA GLU 66 27.501 22.257 42.281 1.00 0.00 C ATOM 255 C GLU 66 26.480 22.160 41.167 1.00 0.00 C ATOM 256 O GLU 66 26.092 23.176 40.578 1.00 0.00 O ATOM 257 N MET 67 26.096 20.934 40.823 1.00 0.00 N ATOM 258 CA MET 67 25.121 20.739 39.757 1.00 0.00 C ATOM 259 C MET 67 23.728 21.248 40.160 1.00 0.00 C ATOM 260 O MET 67 23.035 21.879 39.343 1.00 0.00 O ATOM 261 N LYS 68 23.380 21.085 41.441 1.00 0.00 N ATOM 262 CA LYS 68 22.106 21.605 41.961 1.00 0.00 C ATOM 263 C LYS 68 22.061 23.142 41.830 1.00 0.00 C ATOM 264 O LYS 68 21.038 23.699 41.444 1.00 0.00 O ATOM 265 N VAL 69 23.165 23.830 42.130 1.00 0.00 N ATOM 266 CA VAL 69 23.208 25.295 42.006 1.00 0.00 C ATOM 267 C VAL 69 23.152 25.749 40.539 1.00 0.00 C ATOM 268 O VAL 69 22.603 26.801 40.220 1.00 0.00 O ATOM 269 N ASP 70 23.705 24.928 39.655 1.00 0.00 N ATOM 270 CA ASP 70 23.756 25.203 38.222 1.00 0.00 C ATOM 271 C ASP 70 22.379 25.060 37.585 1.00 0.00 C ATOM 272 O ASP 70 22.024 25.819 36.691 1.00 0.00 O ATOM 273 N ALA 71 21.623 24.062 38.043 1.00 0.00 N ATOM 274 CA ALA 71 20.268 23.765 37.542 1.00 0.00 C ATOM 275 C ALA 71 19.266 23.816 38.717 1.00 0.00 C ATOM 276 O ALA 71 18.721 22.795 39.121 1.00 0.00 O ATOM 277 N GLU 72 18.970 25.027 39.238 1.00 0.00 N ATOM 278 CA GLU 72 18.040 25.163 40.369 1.00 0.00 C ATOM 279 C GLU 72 16.589 24.795 40.054 1.00 0.00 C ATOM 280 O GLU 72 15.788 24.576 40.962 1.00 0.00 O ATOM 281 N GLY 75 16.258 24.701 38.774 1.00 0.00 N ATOM 282 CA GLY 75 14.898 24.357 38.376 1.00 0.00 C ATOM 283 C GLY 75 14.731 22.930 37.838 1.00 0.00 C ATOM 284 O GLY 75 13.747 22.637 37.151 1.00 0.00 O ATOM 285 N ILE 76 15.645 22.032 38.199 1.00 0.00 N ATOM 286 CA ILE 76 15.592 20.648 37.720 1.00 0.00 C ATOM 287 C ILE 76 15.858 19.689 38.860 1.00 0.00 C ATOM 288 O ILE 76 16.598 20.027 39.783 1.00 0.00 O ATOM 289 N GLN 77 15.171 18.524 38.873 1.00 0.00 N ATOM 290 CA GLN 77 15.436 17.571 39.953 1.00 0.00 C ATOM 291 C GLN 77 16.767 16.909 39.553 1.00 0.00 C ATOM 292 O GLN 77 16.937 16.503 38.409 1.00 0.00 O ATOM 293 N ILE 78 17.722 16.900 40.472 1.00 0.00 N ATOM 294 CA ILE 78 19.050 16.332 40.225 1.00 0.00 C ATOM 295 C ILE 78 19.377 15.302 41.289 1.00 0.00 C ATOM 296 O ILE 78 19.243 15.580 42.477 1.00 0.00 O ATOM 297 N VAL 79 19.776 14.108 40.885 1.00 0.00 N ATOM 298 CA VAL 79 20.149 13.122 41.876 1.00 0.00 C ATOM 299 C VAL 79 21.184 12.115 41.407 1.00 0.00 C ATOM 300 O VAL 79 21.464 12.003 40.223 1.00 0.00 O ATOM 301 N ALA 80 21.831 11.480 42.370 1.00 0.00 N ATOM 302 CA ALA 80 22.875 10.506 42.103 1.00 0.00 C ATOM 303 C ALA 80 22.270 9.126 41.937 1.00 0.00 C ATOM 304 O ALA 80 21.362 8.757 42.677 1.00 0.00 O ATOM 305 N THR 81 22.786 8.363 40.978 1.00 0.00 N ATOM 306 CA THR 81 22.304 7.013 40.715 1.00 0.00 C ATOM 307 C THR 81 22.829 6.101 41.802 1.00 0.00 C ATOM 308 O THR 81 23.983 6.208 42.205 1.00 0.00 O ATOM 309 N ARG 82 21.968 5.235 42.307 1.00 0.00 N ATOM 310 CA ARG 82 22.372 4.291 43.339 1.00 0.00 C ATOM 311 C ARG 82 23.570 3.468 42.832 1.00 0.00 C ATOM 312 O ARG 82 23.477 2.818 41.803 1.00 0.00 O ATOM 313 N GLY 83 24.670 3.448 43.584 1.00 0.00 N ATOM 314 CA GLY 83 25.871 2.723 43.155 1.00 0.00 C ATOM 315 C GLY 83 25.721 1.228 42.869 1.00 0.00 C ATOM 316 O GLY 83 26.370 0.700 41.960 1.00 0.00 O ATOM 317 N MET 84 24.828 0.559 43.592 1.00 0.00 N ATOM 318 CA MET 84 24.597 -0.870 43.402 1.00 0.00 C ATOM 319 C MET 84 23.808 -1.101 42.121 1.00 0.00 C ATOM 320 O MET 84 24.093 -2.024 41.353 1.00 0.00 O ATOM 321 N GLU 85 22.808 -0.254 41.897 1.00 0.00 N ATOM 322 CA GLU 85 21.973 -0.345 40.704 1.00 0.00 C ATOM 323 C GLU 85 22.841 -0.063 39.497 1.00 0.00 C ATOM 324 O GLU 85 22.673 -0.684 38.445 1.00 0.00 O ATOM 325 N TYR 86 23.772 0.874 39.663 1.00 0.00 N ATOM 326 CA TYR 86 24.692 1.262 38.590 1.00 0.00 C ATOM 327 C TYR 86 25.709 0.150 38.281 1.00 0.00 C ATOM 328 O TYR 86 25.862 -0.259 37.125 1.00 0.00 O ATOM 329 N ILE 87 26.368 -0.356 39.322 1.00 0.00 N ATOM 330 CA ILE 87 27.347 -1.407 39.129 1.00 0.00 C ATOM 331 C ILE 87 26.773 -2.645 38.466 1.00 0.00 C ATOM 332 O ILE 87 27.403 -3.256 37.605 1.00 0.00 O ATOM 333 N HIS 88 25.560 -2.995 38.862 1.00 0.00 N ATOM 334 CA HIS 88 24.850 -4.165 38.355 1.00 0.00 C ATOM 335 C HIS 88 24.236 -3.939 36.971 1.00 0.00 C ATOM 336 O HIS 88 23.729 -4.875 36.348 1.00 0.00 O ATOM 337 N LEU 89 24.269 -2.690 36.508 1.00 0.00 N ATOM 338 CA LEU 89 23.696 -2.285 35.217 1.00 0.00 C ATOM 339 C LEU 89 22.186 -2.604 35.152 1.00 0.00 C ATOM 340 O LEU 89 21.671 -3.121 34.153 1.00 0.00 O ATOM 341 N SER 92 21.473 -2.236 36.218 1.00 0.00 N ATOM 342 CA SER 92 20.036 -2.488 36.326 1.00 0.00 C ATOM 343 C SER 92 19.231 -1.411 35.605 1.00 0.00 C ATOM 344 O SER 92 18.833 -0.401 36.209 1.00 0.00 O ATOM 345 N PRO 93 18.987 -1.657 34.318 1.00 0.00 N ATOM 346 CA PRO 93 18.232 -0.733 33.491 1.00 0.00 C ATOM 347 C PRO 93 16.836 -0.465 34.022 1.00 0.00 C ATOM 348 O PRO 93 16.396 0.688 34.041 1.00 0.00 O ATOM 349 N SER 94 16.136 -1.505 34.472 1.00 0.00 N ATOM 350 CA SER 94 14.776 -1.314 34.991 1.00 0.00 C ATOM 351 C SER 94 14.766 -0.513 36.302 1.00 0.00 C ATOM 352 O SER 94 14.026 0.457 36.444 1.00 0.00 O ATOM 353 N LYS 95 15.672 -0.867 37.204 1.00 0.00 N ATOM 354 CA LYS 95 15.769 -0.197 38.487 1.00 0.00 C ATOM 355 C LYS 95 16.067 1.283 38.401 1.00 0.00 C ATOM 356 O LYS 95 15.457 2.087 39.109 1.00 0.00 O ATOM 357 N ALA 96 17.005 1.655 37.536 1.00 0.00 N ATOM 358 CA ALA 96 17.369 3.064 37.378 1.00 0.00 C ATOM 359 C ALA 96 16.258 3.809 36.662 1.00 0.00 C ATOM 360 O ALA 96 15.957 4.963 36.995 1.00 0.00 O ATOM 361 N LEU 97 15.629 3.146 35.696 1.00 0.00 N ATOM 362 CA LEU 97 14.503 3.753 34.988 1.00 0.00 C ATOM 363 C LEU 97 13.413 4.085 36.034 1.00 0.00 C ATOM 364 O LEU 97 12.870 5.178 36.039 1.00 0.00 O ATOM 365 N GLN 98 13.147 3.158 36.953 1.00 0.00 N ATOM 366 CA GLN 98 12.151 3.383 38.002 1.00 0.00 C ATOM 367 C GLN 98 12.489 4.587 38.880 1.00 0.00 C ATOM 368 O GLN 98 11.607 5.372 39.227 1.00 0.00 O ATOM 369 N PHE 99 13.757 4.715 39.274 1.00 0.00 N ATOM 370 CA PHE 99 14.189 5.821 40.126 1.00 0.00 C ATOM 371 C PHE 99 14.034 7.169 39.430 1.00 0.00 C ATOM 372 O PHE 99 13.676 8.170 40.054 1.00 0.00 O ATOM 373 N VAL 100 14.241 7.173 38.117 1.00 0.00 N ATOM 374 CA VAL 100 14.151 8.389 37.321 1.00 0.00 C ATOM 375 C VAL 100 12.708 8.865 37.183 1.00 0.00 C ATOM 376 O VAL 100 12.434 10.060 37.297 1.00 0.00 O ATOM 377 N LEU 101 11.803 7.930 36.903 1.00 0.00 N ATOM 378 CA LEU 101 10.389 8.246 36.767 1.00 0.00 C ATOM 379 C LEU 101 9.906 8.767 38.129 1.00 0.00 C ATOM 380 O LEU 101 9.205 9.780 38.205 1.00 0.00 O ATOM 381 N GLU 102 10.357 8.124 39.204 1.00 0.00 N ATOM 382 CA GLU 102 9.994 8.540 40.561 1.00 0.00 C ATOM 383 C GLU 102 10.445 9.981 40.829 1.00 0.00 C ATOM 384 O GLU 102 9.663 10.800 41.312 1.00 0.00 O ATOM 385 N HIS 103 11.691 10.304 40.510 1.00 0.00 N ATOM 386 CA HIS 103 12.177 11.655 40.750 1.00 0.00 C ATOM 387 C HIS 103 11.324 12.674 39.995 1.00 0.00 C ATOM 388 O HIS 103 11.096 13.778 40.489 1.00 0.00 O ATOM 389 N TYR 104 10.835 12.297 38.817 1.00 0.00 N ATOM 390 CA TYR 104 9.997 13.191 38.021 1.00 0.00 C ATOM 391 C TYR 104 8.627 13.412 38.685 1.00 0.00 C ATOM 392 O TYR 104 8.147 14.550 38.739 1.00 0.00 O ATOM 393 N GLN 105 8.015 12.331 39.177 1.00 0.00 N ATOM 394 CA GLN 105 6.717 12.389 39.850 1.00 0.00 C ATOM 395 C GLN 105 6.832 13.168 41.149 1.00 0.00 C ATOM 396 O GLN 105 6.089 14.118 41.384 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 396 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 32.34 87.5 192 93.2 206 ARMSMC SECONDARY STRUCTURE . . 17.25 96.4 137 97.9 140 ARMSMC SURFACE . . . . . . . . 35.13 86.4 110 91.7 120 ARMSMC BURIED . . . . . . . . 28.15 89.0 82 95.3 86 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 81 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 72 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 57 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 61 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 43 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 42 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.64 (Number of atoms: 99) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.64 99 95.2 104 CRMSCA CRN = ALL/NP . . . . . 0.0166 CRMSCA SECONDARY STRUCTURE . . 1.50 69 98.6 70 CRMSCA SURFACE . . . . . . . . 1.62 57 93.4 61 CRMSCA BURIED . . . . . . . . 1.67 42 97.7 43 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.62 396 77.3 512 CRMSMC SECONDARY STRUCTURE . . 1.45 276 79.5 347 CRMSMC SURFACE . . . . . . . . 1.63 228 76.5 298 CRMSMC BURIED . . . . . . . . 1.59 168 78.5 214 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 373 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 303 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 247 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 229 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 144 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.62 396 50.2 789 CRMSALL SECONDARY STRUCTURE . . 1.45 276 52.4 527 CRMSALL SURFACE . . . . . . . . 1.63 228 48.2 473 CRMSALL BURIED . . . . . . . . 1.59 168 53.2 316 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.346 1.000 0.500 99 95.2 104 ERRCA SECONDARY STRUCTURE . . 1.248 1.000 0.500 69 98.6 70 ERRCA SURFACE . . . . . . . . 1.313 1.000 0.500 57 93.4 61 ERRCA BURIED . . . . . . . . 1.391 1.000 0.500 42 97.7 43 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.346 1.000 0.500 396 77.3 512 ERRMC SECONDARY STRUCTURE . . 1.219 1.000 0.500 276 79.5 347 ERRMC SURFACE . . . . . . . . 1.351 1.000 0.500 228 76.5 298 ERRMC BURIED . . . . . . . . 1.339 1.000 0.500 168 78.5 214 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 373 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 303 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 247 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 229 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 144 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.346 1.000 0.500 396 50.2 789 ERRALL SECONDARY STRUCTURE . . 1.219 1.000 0.500 276 52.4 527 ERRALL SURFACE . . . . . . . . 1.351 1.000 0.500 228 48.2 473 ERRALL BURIED . . . . . . . . 1.339 1.000 0.500 168 53.2 316 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 48 78 91 99 99 99 104 DISTCA CA (P) 46.15 75.00 87.50 95.19 95.19 104 DISTCA CA (RMS) 0.68 1.04 1.32 1.64 1.64 DISTCA ALL (N) 190 313 371 395 396 396 789 DISTALL ALL (P) 24.08 39.67 47.02 50.06 50.19 789 DISTALL ALL (RMS) 0.69 1.06 1.37 1.59 1.62 DISTALL END of the results output