####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 87 ( 348), selected 87 , name T0580AL285_1-D1 # Molecule2: number of CA atoms 104 ( 789), selected 87 , name T0580-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0580AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 87 3 - 91 1.76 1.76 LCS_AVERAGE: 83.65 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 87 3 - 91 1.76 1.76 LCS_AVERAGE: 83.65 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 47 24 - 70 0.99 1.82 LONGEST_CONTINUOUS_SEGMENT: 47 25 - 71 1.00 1.83 LCS_AVERAGE: 30.91 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 87 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 3 E 3 10 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT L 4 L 4 10 87 87 14 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT K 5 K 5 10 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT V 6 V 6 10 87 87 18 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT L 7 L 7 10 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT V 8 V 8 10 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT L 9 L 9 10 87 87 18 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT C 10 C 10 10 87 87 22 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT A 11 A 11 10 87 87 14 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT G 12 G 12 10 87 87 4 12 26 57 63 76 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT S 13 S 13 3 87 87 3 3 31 50 72 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT G 14 G 14 29 87 87 4 19 41 71 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT T 15 T 15 29 87 87 4 23 52 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT S 16 S 16 29 87 87 9 29 60 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT A 17 A 17 29 87 87 6 44 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT Q 18 Q 18 29 87 87 7 29 51 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT L 19 L 19 29 87 87 11 22 47 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT A 20 A 20 29 87 87 11 29 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT N 21 N 21 29 87 87 9 29 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT A 22 A 22 29 87 87 10 26 58 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT I 23 I 23 45 87 87 11 29 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT N 24 N 24 47 87 87 11 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT E 25 E 25 47 87 87 11 47 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT G 26 G 26 47 87 87 11 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT A 27 A 27 47 87 87 11 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT N 28 N 28 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT L 29 L 29 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT T 30 T 30 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT E 31 E 31 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT V 32 V 32 47 87 87 11 29 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT R 33 R 33 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT V 34 V 34 47 87 87 19 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT I 35 I 35 47 87 87 16 47 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT A 36 A 36 47 87 87 14 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT N 37 N 37 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT S 38 S 38 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT G 39 G 39 47 87 87 18 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT A 40 A 40 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT Y 41 Y 41 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT G 42 G 42 47 87 87 20 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT A 43 A 43 47 87 87 3 17 43 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT H 44 H 44 47 87 87 3 6 26 63 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT Y 45 Y 45 47 87 87 7 25 60 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT D 46 D 46 47 87 87 3 29 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT I 47 I 47 47 87 87 3 26 60 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT M 48 M 48 47 87 87 9 42 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT G 49 G 49 47 87 87 7 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT V 50 V 50 47 87 87 12 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT Y 51 Y 51 47 87 87 16 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT D 52 D 52 47 87 87 18 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT L 53 L 53 47 87 87 22 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT I 54 I 54 47 87 87 14 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT I 55 I 55 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT L 56 L 56 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT A 57 A 57 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT P 58 P 58 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT Q 59 Q 59 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT V 60 V 60 47 87 87 20 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT R 61 R 61 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT S 62 S 62 47 87 87 16 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT Y 63 Y 63 47 87 87 20 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT Y 64 Y 64 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT R 65 R 65 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT E 66 E 66 47 87 87 20 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT M 67 M 67 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT K 68 K 68 47 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT V 69 V 69 47 87 87 20 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT D 70 D 70 47 87 87 20 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT A 71 A 71 47 87 87 19 45 60 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT L 74 L 74 3 87 87 3 3 4 9 25 56 81 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT G 75 G 75 7 87 87 6 40 59 72 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT I 76 I 76 7 87 87 12 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT Q 77 Q 77 7 87 87 13 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT I 78 I 78 7 87 87 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT V 79 V 79 7 87 87 16 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT A 80 A 80 7 87 87 12 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT T 81 T 81 9 87 87 5 10 35 68 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT R 82 R 82 9 87 87 8 10 11 31 55 79 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT G 83 G 83 9 87 87 8 28 49 69 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT M 84 M 84 9 87 87 13 43 60 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT E 85 E 85 9 87 87 8 10 18 63 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT Y 86 Y 86 9 87 87 8 32 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT I 87 I 87 9 87 87 8 10 33 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT H 88 H 88 9 87 87 8 10 32 65 77 80 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT L 89 L 89 9 87 87 8 10 23 31 61 76 81 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT T 90 T 90 3 87 87 3 4 15 59 76 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 LCS_GDT K 91 K 91 3 87 87 3 4 4 5 38 58 78 84 86 87 87 87 87 87 87 87 87 87 87 87 LCS_AVERAGE LCS_A: 66.07 ( 30.91 83.65 83.65 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 23 48 61 73 78 81 84 85 86 87 87 87 87 87 87 87 87 87 87 87 GDT PERCENT_AT 22.12 46.15 58.65 70.19 75.00 77.88 80.77 81.73 82.69 83.65 83.65 83.65 83.65 83.65 83.65 83.65 83.65 83.65 83.65 83.65 GDT RMS_LOCAL 0.38 0.63 0.86 1.11 1.25 1.36 1.51 1.58 1.67 1.76 1.76 1.76 1.76 1.76 1.76 1.76 1.76 1.76 1.76 1.76 GDT RMS_ALL_AT 1.91 1.85 1.80 1.78 1.77 1.77 1.77 1.77 1.76 1.76 1.76 1.76 1.76 1.76 1.76 1.76 1.76 1.76 1.76 1.76 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 3 E 3 0.431 5 0.080 0.080 0.804 92.857 41.270 LGA L 4 L 4 0.816 4 0.065 0.065 0.816 95.238 47.619 LGA K 5 K 5 0.263 5 0.033 0.033 0.476 100.000 44.444 LGA V 6 V 6 0.549 3 0.075 0.075 0.724 92.857 53.061 LGA L 7 L 7 0.605 4 0.015 0.015 0.646 90.476 45.238 LGA V 8 V 8 0.744 3 0.049 0.049 1.166 88.214 50.408 LGA L 9 L 9 1.033 4 0.034 0.034 1.344 83.690 41.845 LGA C 10 C 10 0.965 2 0.104 0.104 1.234 88.333 58.889 LGA A 11 A 11 0.557 1 0.138 0.138 2.078 79.643 63.714 LGA G 12 G 12 3.897 0 0.384 0.384 5.235 46.071 46.071 LGA S 13 S 13 3.352 2 0.186 0.186 4.123 54.286 36.190 LGA G 14 G 14 2.276 0 0.260 0.260 2.276 68.810 68.810 LGA T 15 T 15 1.937 3 0.037 0.037 2.051 70.833 40.476 LGA S 16 S 16 1.603 2 0.073 0.073 1.782 77.143 51.429 LGA A 17 A 17 1.049 1 0.022 0.022 1.406 81.429 65.143 LGA Q 18 Q 18 2.057 5 0.018 0.018 2.057 66.786 29.683 LGA L 19 L 19 2.111 4 0.024 0.024 2.111 68.810 34.405 LGA A 20 A 20 1.438 1 0.012 0.012 1.671 79.286 63.429 LGA N 21 N 21 1.346 4 0.019 0.019 1.511 79.286 39.643 LGA A 22 A 22 1.865 1 0.048 0.048 1.865 72.857 58.286 LGA I 23 I 23 1.656 4 0.030 0.030 1.705 77.143 38.571 LGA N 24 N 24 0.921 4 0.023 0.023 1.198 88.214 44.107 LGA E 25 E 25 0.833 5 0.036 0.036 0.872 90.476 40.212 LGA G 26 G 26 0.840 0 0.016 0.016 0.885 90.476 90.476 LGA A 27 A 27 0.798 1 0.055 0.055 0.798 90.476 72.381 LGA N 28 N 28 0.698 4 0.028 0.028 0.880 90.476 45.238 LGA L 29 L 29 0.849 4 0.036 0.036 0.849 90.476 45.238 LGA T 30 T 30 0.681 3 0.150 0.150 1.440 88.214 50.408 LGA E 31 E 31 0.977 5 0.076 0.076 1.433 85.952 38.201 LGA V 32 V 32 1.388 3 0.090 0.090 1.388 85.952 49.116 LGA R 33 R 33 0.214 7 0.079 0.079 0.617 95.238 34.632 LGA V 34 V 34 0.711 3 0.075 0.075 0.976 92.857 53.061 LGA I 35 I 35 1.155 4 0.051 0.051 1.155 90.595 45.298 LGA A 36 A 36 0.514 1 0.028 0.028 0.818 92.857 74.286 LGA N 37 N 37 0.176 4 0.068 0.068 0.679 97.619 48.810 LGA S 38 S 38 0.310 2 0.046 0.046 0.310 100.000 66.667 LGA G 39 G 39 0.810 0 0.035 0.035 0.810 90.476 90.476 LGA A 40 A 40 0.506 1 0.108 0.108 0.714 92.857 74.286 LGA Y 41 Y 41 0.131 8 0.654 0.654 3.204 82.857 27.619 LGA G 42 G 42 0.697 0 0.017 0.017 1.326 85.952 85.952 LGA A 43 A 43 2.187 1 0.030 0.030 3.271 63.333 50.667 LGA H 44 H 44 2.865 6 0.186 0.186 2.865 59.048 23.619 LGA Y 45 Y 45 1.908 8 0.018 0.018 2.338 75.119 25.040 LGA D 46 D 46 1.559 4 0.150 0.150 1.597 72.857 36.429 LGA I 47 I 47 1.715 4 0.104 0.104 1.715 77.143 38.571 LGA M 48 M 48 1.218 4 0.020 0.020 1.522 83.810 41.905 LGA G 49 G 49 0.981 0 0.041 0.041 1.177 88.214 88.214 LGA V 50 V 50 0.973 3 0.123 0.123 0.973 90.476 51.701 LGA Y 51 Y 51 0.541 8 0.034 0.034 0.699 92.857 30.952 LGA D 52 D 52 0.581 4 0.050 0.050 0.941 92.857 46.429 LGA L 53 L 53 0.737 4 0.042 0.042 0.766 90.476 45.238 LGA I 54 I 54 1.098 4 0.038 0.038 1.098 88.214 44.107 LGA I 55 I 55 0.862 4 0.036 0.036 1.187 88.214 44.107 LGA L 56 L 56 0.766 4 0.061 0.061 0.816 90.476 45.238 LGA A 57 A 57 0.974 1 0.050 0.050 0.974 90.476 72.381 LGA P 58 P 58 1.196 3 0.073 0.073 1.196 85.952 49.116 LGA Q 59 Q 59 0.627 5 0.084 0.084 1.102 88.214 39.206 LGA V 60 V 60 0.933 3 0.029 0.029 0.933 90.476 51.701 LGA R 61 R 61 0.773 7 0.043 0.043 0.819 90.476 32.900 LGA S 62 S 62 1.003 2 0.012 0.012 1.003 88.214 58.810 LGA Y 63 Y 63 0.646 8 0.047 0.047 0.840 90.476 30.159 LGA Y 64 Y 64 0.786 8 0.034 0.034 1.000 90.476 30.159 LGA R 65 R 65 1.069 7 0.035 0.035 1.206 83.690 30.433 LGA E 66 E 66 0.899 5 0.014 0.014 1.088 88.214 39.206 LGA M 67 M 67 0.797 4 0.019 0.019 1.054 88.214 44.107 LGA K 68 K 68 1.106 5 0.016 0.016 1.294 81.429 36.190 LGA V 69 V 69 1.250 3 0.087 0.087 1.768 79.286 45.306 LGA D 70 D 70 1.286 4 0.024 0.024 1.662 79.286 39.643 LGA A 71 A 71 1.632 1 0.409 0.409 1.762 79.405 63.524 LGA L 74 L 74 5.343 4 0.031 0.031 5.768 32.024 16.012 LGA G 75 G 75 1.915 0 0.037 0.037 2.232 68.810 68.810 LGA I 76 I 76 1.201 4 0.035 0.035 1.344 81.429 40.714 LGA Q 77 Q 77 1.264 5 0.036 0.036 1.264 83.690 37.196 LGA I 78 I 78 0.883 4 0.020 0.020 1.406 83.690 41.845 LGA V 79 V 79 1.177 3 0.095 0.095 1.177 88.214 50.408 LGA A 80 A 80 0.482 1 0.042 0.042 1.154 90.714 72.571 LGA T 81 T 81 2.442 3 0.084 0.084 2.772 62.976 35.986 LGA R 82 R 82 3.989 7 0.170 0.170 3.989 53.810 19.567 LGA G 83 G 83 2.465 0 0.099 0.099 3.026 69.524 69.524 LGA M 84 M 84 1.555 4 0.024 0.024 2.130 77.381 38.690 LGA E 85 E 85 2.711 5 0.073 0.073 2.739 60.952 27.090 LGA Y 86 Y 86 1.568 8 0.032 0.032 2.690 68.929 22.976 LGA I 87 I 87 2.210 4 0.029 0.029 3.756 61.667 30.833 LGA H 88 H 88 3.159 6 0.181 0.181 3.845 50.357 20.143 LGA L 89 L 89 4.507 4 0.405 0.405 4.507 47.619 23.810 LGA T 90 T 90 3.144 3 0.528 0.528 5.345 51.905 29.660 LGA K 91 K 91 5.477 5 0.214 0.214 7.877 26.190 11.640 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 87 348 348 100.00 653 348 53.29 104 SUMMARY(RMSD_GDC): 1.760 1.731 1.731 67.147 38.727 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 87 104 4.0 85 1.58 70.433 76.649 5.053 LGA_LOCAL RMSD: 1.582 Number of atoms: 85 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.766 Number of assigned atoms: 87 Std_ASGN_ATOMS RMSD: 1.760 Standard rmsd on all 87 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.872391 * X + -0.341387 * Y + -0.349841 * Z + 7.646987 Y_new = 0.161759 * X + -0.473750 * Y + 0.865676 * Z + -11.693521 Z_new = -0.461268 * X + -0.811798 * Y + -0.358073 * Z + 81.128563 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.183338 0.479423 -1.986213 [DEG: 10.5045 27.4689 -113.8016 ] ZXZ: -2.757536 1.936999 -2.624880 [DEG: -157.9952 110.9819 -150.3946 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0580AL285_1-D1 REMARK 2: T0580-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0580AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 87 104 4.0 85 1.58 76.649 1.76 REMARK ---------------------------------------------------------- MOLECULE T0580AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1iibA ATOM 1 N GLU 3 7.150 13.189 25.958 1.00 0.00 N ATOM 2 CA GLU 3 8.367 12.384 26.297 1.00 0.00 C ATOM 3 C GLU 3 9.343 13.169 27.159 1.00 0.00 C ATOM 4 O GLU 3 9.837 14.225 26.761 1.00 0.00 O ATOM 5 N LEU 4 9.616 12.643 28.342 1.00 0.00 N ATOM 6 CA LEU 4 10.520 13.293 29.270 1.00 0.00 C ATOM 7 C LEU 4 11.978 12.946 28.971 1.00 0.00 C ATOM 8 O LEU 4 12.288 11.836 28.541 1.00 0.00 O ATOM 9 N LYS 5 12.865 13.905 29.208 1.00 0.00 N ATOM 10 CA LYS 5 14.290 13.735 28.958 1.00 0.00 C ATOM 11 C LYS 5 15.059 13.407 30.215 1.00 0.00 C ATOM 12 O LYS 5 15.080 14.198 31.163 1.00 0.00 O ATOM 13 N VAL 6 15.654 12.221 30.234 1.00 0.00 N ATOM 14 CA VAL 6 16.463 11.787 31.358 1.00 0.00 C ATOM 15 C VAL 6 17.916 11.829 30.866 1.00 0.00 C ATOM 16 O VAL 6 18.285 11.081 29.951 1.00 0.00 O ATOM 17 N LEU 7 18.717 12.721 31.433 1.00 0.00 N ATOM 18 CA LEU 7 20.113 12.851 31.053 1.00 0.00 C ATOM 19 C LEU 7 21.033 12.396 32.171 1.00 0.00 C ATOM 20 O LEU 7 20.880 12.838 33.313 1.00 0.00 O ATOM 21 N VAL 8 21.968 11.499 31.845 1.00 0.00 N ATOM 22 CA VAL 8 22.955 10.979 32.804 1.00 0.00 C ATOM 23 C VAL 8 24.290 11.654 32.500 1.00 0.00 C ATOM 24 O VAL 8 24.662 11.794 31.335 1.00 0.00 O ATOM 25 N LEU 9 24.993 12.096 33.540 1.00 0.00 N ATOM 26 CA LEU 9 26.294 12.764 33.387 1.00 0.00 C ATOM 27 C LEU 9 27.314 12.028 34.219 1.00 0.00 C ATOM 28 O LEU 9 27.090 11.799 35.411 1.00 0.00 O ATOM 29 N CYS 10 28.430 11.645 33.606 1.00 0.00 N ATOM 30 CA CYS 10 29.459 10.913 34.332 1.00 0.00 C ATOM 31 C CYS 10 30.821 11.049 33.660 1.00 0.00 C ATOM 32 O CYS 10 30.908 11.423 32.483 1.00 0.00 O ATOM 33 N ALA 11 31.878 10.779 34.428 1.00 0.00 N ATOM 34 CA ALA 11 33.240 10.810 33.905 1.00 0.00 C ATOM 35 C ALA 11 33.584 9.406 33.354 1.00 0.00 C ATOM 36 O ALA 11 34.542 9.245 32.594 1.00 0.00 O ATOM 37 N GLY 12 32.757 8.415 33.701 1.00 0.00 N ATOM 38 CA GLY 12 32.923 7.020 33.271 1.00 0.00 C ATOM 39 C GLY 12 32.051 6.722 32.044 1.00 0.00 C ATOM 40 O GLY 12 30.970 6.140 32.156 1.00 0.00 O ATOM 41 N SER 13 32.535 7.125 30.876 1.00 0.00 N ATOM 42 CA SER 13 31.808 6.940 29.633 1.00 0.00 C ATOM 43 C SER 13 31.218 5.585 29.305 1.00 0.00 C ATOM 44 O SER 13 30.020 5.492 29.051 1.00 0.00 O ATOM 45 N GLY 14 32.032 4.535 29.312 1.00 0.00 N ATOM 46 CA GLY 14 31.549 3.197 28.965 1.00 0.00 C ATOM 47 C GLY 14 30.449 2.624 29.861 1.00 0.00 C ATOM 48 O GLY 14 29.402 2.210 29.349 1.00 0.00 O ATOM 49 N THR 15 30.670 2.576 31.175 1.00 0.00 N ATOM 50 CA THR 15 29.651 2.014 32.069 1.00 0.00 C ATOM 51 C THR 15 28.338 2.800 32.050 1.00 0.00 C ATOM 52 O THR 15 27.254 2.216 32.122 1.00 0.00 O ATOM 53 N SER 16 28.436 4.114 31.869 1.00 0.00 N ATOM 54 CA SER 16 27.254 4.968 31.802 1.00 0.00 C ATOM 55 C SER 16 26.473 4.669 30.522 1.00 0.00 C ATOM 56 O SER 16 25.250 4.513 30.584 1.00 0.00 O ATOM 57 N ALA 17 27.173 4.584 29.378 1.00 0.00 N ATOM 58 CA ALA 17 26.532 4.269 28.087 1.00 0.00 C ATOM 59 C ALA 17 25.890 2.876 28.107 1.00 0.00 C ATOM 60 O ALA 17 24.856 2.640 27.471 1.00 0.00 O ATOM 61 N GLN 18 26.522 1.948 28.811 1.00 0.00 N ATOM 62 CA GLN 18 25.988 0.606 28.926 1.00 0.00 C ATOM 63 C GLN 18 24.694 0.649 29.767 1.00 0.00 C ATOM 64 O GLN 18 23.712 -0.030 29.443 1.00 0.00 O ATOM 65 N LEU 19 24.687 1.453 30.831 1.00 0.00 N ATOM 66 CA LEU 19 23.489 1.607 31.679 1.00 0.00 C ATOM 67 C LEU 19 22.357 2.259 30.855 1.00 0.00 C ATOM 68 O LEU 19 21.211 1.810 30.903 1.00 0.00 O ATOM 69 N ALA 20 22.696 3.281 30.068 1.00 0.00 N ATOM 70 CA ALA 20 21.707 3.952 29.214 1.00 0.00 C ATOM 71 C ALA 20 21.060 2.963 28.233 1.00 0.00 C ATOM 72 O ALA 20 19.840 2.967 28.072 1.00 0.00 O ATOM 73 N ASN 21 21.848 2.089 27.603 1.00 0.00 N ATOM 74 CA ASN 21 21.257 1.127 26.670 1.00 0.00 C ATOM 75 C ASN 21 20.276 0.166 27.375 1.00 0.00 C ATOM 76 O ASN 21 19.225 -0.162 26.815 1.00 0.00 O ATOM 77 N ALA 22 20.587 -0.259 28.602 1.00 0.00 N ATOM 78 CA ALA 22 19.678 -1.144 29.346 1.00 0.00 C ATOM 79 C ALA 22 18.422 -0.380 29.808 1.00 0.00 C ATOM 80 O ALA 22 17.330 -0.939 29.858 1.00 0.00 O ATOM 81 N ILE 23 18.568 0.891 30.151 1.00 0.00 N ATOM 82 CA ILE 23 17.400 1.669 30.563 1.00 0.00 C ATOM 83 C ILE 23 16.457 1.832 29.357 1.00 0.00 C ATOM 84 O ILE 23 15.245 1.730 29.507 1.00 0.00 O ATOM 85 N ASN 24 17.004 2.096 28.169 1.00 0.00 N ATOM 86 CA ASN 24 16.188 2.259 26.966 1.00 0.00 C ATOM 87 C ASN 24 15.400 0.987 26.660 1.00 0.00 C ATOM 88 O ASN 24 14.264 1.064 26.176 1.00 0.00 O ATOM 89 N GLU 25 16.017 -0.171 26.903 1.00 0.00 N ATOM 90 CA GLU 25 15.368 -1.459 26.654 1.00 0.00 C ATOM 91 C GLU 25 14.152 -1.590 27.568 1.00 0.00 C ATOM 92 O GLU 25 13.061 -1.946 27.121 1.00 0.00 O ATOM 93 N GLY 26 14.340 -1.245 28.836 1.00 0.00 N ATOM 94 CA GLY 26 13.282 -1.309 29.827 1.00 0.00 C ATOM 95 C GLY 26 12.164 -0.334 29.532 1.00 0.00 C ATOM 96 O GLY 26 10.989 -0.682 29.650 1.00 0.00 O ATOM 97 N ALA 27 12.526 0.884 29.136 1.00 0.00 N ATOM 98 CA ALA 27 11.530 1.897 28.821 1.00 0.00 C ATOM 99 C ALA 27 10.654 1.438 27.656 1.00 0.00 C ATOM 100 O ALA 27 9.467 1.759 27.604 1.00 0.00 O ATOM 101 N ASN 28 11.231 0.683 26.726 1.00 0.00 N ATOM 102 CA ASN 28 10.493 0.186 25.566 1.00 0.00 C ATOM 103 C ASN 28 9.563 -0.947 25.983 1.00 0.00 C ATOM 104 O ASN 28 8.393 -0.983 25.601 1.00 0.00 O ATOM 105 N LEU 29 10.087 -1.846 26.804 1.00 0.00 N ATOM 106 CA LEU 29 9.331 -2.982 27.295 1.00 0.00 C ATOM 107 C LEU 29 8.063 -2.540 28.040 1.00 0.00 C ATOM 108 O LEU 29 7.007 -3.160 27.882 1.00 0.00 O ATOM 109 N THR 30 8.155 -1.474 28.840 1.00 0.00 N ATOM 110 CA THR 30 6.987 -0.974 29.597 1.00 0.00 C ATOM 111 C THR 30 6.324 0.288 29.048 1.00 0.00 C ATOM 112 O THR 30 5.545 0.934 29.752 1.00 0.00 O ATOM 113 N GLU 31 6.648 0.648 27.809 1.00 0.00 N ATOM 114 CA GLU 31 6.079 1.828 27.145 1.00 0.00 C ATOM 115 C GLU 31 6.181 3.149 27.915 1.00 0.00 C ATOM 116 O GLU 31 5.262 3.957 27.898 1.00 0.00 O ATOM 117 N VAL 32 7.312 3.373 28.575 1.00 0.00 N ATOM 118 CA VAL 32 7.538 4.607 29.321 1.00 0.00 C ATOM 119 C VAL 32 7.982 5.635 28.280 1.00 0.00 C ATOM 120 O VAL 32 8.919 5.392 27.522 1.00 0.00 O ATOM 121 N ARG 33 7.276 6.772 28.186 1.00 0.00 N ATOM 122 CA ARG 33 7.585 7.842 27.229 1.00 0.00 C ATOM 123 C ARG 33 8.752 8.743 27.644 1.00 0.00 C ATOM 124 O ARG 33 8.570 9.915 28.014 1.00 0.00 O ATOM 125 N VAL 34 9.959 8.198 27.534 1.00 0.00 N ATOM 126 CA VAL 34 11.162 8.930 27.897 1.00 0.00 C ATOM 127 C VAL 34 12.271 8.810 26.860 1.00 0.00 C ATOM 128 O VAL 34 12.306 7.864 26.063 1.00 0.00 O ATOM 129 N ILE 35 13.136 9.818 26.848 1.00 0.00 N ATOM 130 CA ILE 35 14.313 9.875 25.992 1.00 0.00 C ATOM 131 C ILE 35 15.469 9.870 27.015 1.00 0.00 C ATOM 132 O ILE 35 15.475 10.679 27.955 1.00 0.00 O ATOM 133 N ALA 36 16.406 8.933 26.848 1.00 0.00 N ATOM 134 CA ALA 36 17.558 8.761 27.751 1.00 0.00 C ATOM 135 C ALA 36 18.887 8.965 26.993 1.00 0.00 C ATOM 136 O ALA 36 19.110 8.329 25.966 1.00 0.00 O ATOM 137 N ASN 37 19.753 9.850 27.493 1.00 0.00 N ATOM 138 CA ASN 37 21.049 10.151 26.866 1.00 0.00 C ATOM 139 C ASN 37 22.134 10.261 27.945 1.00 0.00 C ATOM 140 O ASN 37 21.849 10.671 29.070 1.00 0.00 O ATOM 141 N SER 38 23.356 9.838 27.607 1.00 0.00 N ATOM 142 CA SER 38 24.514 9.915 28.513 1.00 0.00 C ATOM 143 C SER 38 25.447 11.006 27.957 1.00 0.00 C ATOM 144 O SER 38 25.594 11.140 26.742 1.00 0.00 O ATOM 145 N GLY 39 26.053 11.787 28.837 1.00 0.00 N ATOM 146 CA GLY 39 26.967 12.850 28.437 1.00 0.00 C ATOM 147 C GLY 39 28.091 12.920 29.458 1.00 0.00 C ATOM 148 O GLY 39 27.990 12.345 30.558 1.00 0.00 O ATOM 149 N ALA 40 29.212 13.558 29.078 1.00 0.00 N ATOM 150 CA ALA 40 30.332 13.696 30.007 1.00 0.00 C ATOM 151 C ALA 40 29.911 14.811 30.981 1.00 0.00 C ATOM 152 O ALA 40 29.110 15.674 30.627 1.00 0.00 O ATOM 153 N TYR 41 30.487 14.819 32.174 1.00 0.00 N ATOM 154 CA TYR 41 30.176 15.823 33.188 1.00 0.00 C ATOM 155 C TYR 41 30.418 17.260 32.734 1.00 0.00 C ATOM 156 O TYR 41 29.821 18.187 33.277 1.00 0.00 O ATOM 157 N GLY 42 31.278 17.460 31.734 1.00 0.00 N ATOM 158 CA GLY 42 31.572 18.805 31.249 1.00 0.00 C ATOM 159 C GLY 42 30.383 19.504 30.602 1.00 0.00 C ATOM 160 O GLY 42 30.379 20.723 30.466 1.00 0.00 O ATOM 161 N ALA 43 29.390 18.728 30.174 1.00 0.00 N ATOM 162 CA ALA 43 28.192 19.281 29.544 1.00 0.00 C ATOM 163 C ALA 43 26.986 19.408 30.496 1.00 0.00 C ATOM 164 O ALA 43 25.910 19.793 30.046 1.00 0.00 O ATOM 165 N HIS 44 27.156 19.112 31.789 1.00 0.00 N ATOM 166 CA HIS 44 26.048 19.164 32.764 1.00 0.00 C ATOM 167 C HIS 44 25.298 20.486 32.766 1.00 0.00 C ATOM 168 O HIS 44 24.080 20.511 32.862 1.00 0.00 O ATOM 169 N TYR 45 26.026 21.576 32.581 1.00 0.00 N ATOM 170 CA TYR 45 25.397 22.877 32.567 1.00 0.00 C ATOM 171 C TYR 45 24.776 23.222 31.229 1.00 0.00 C ATOM 172 O TYR 45 23.741 23.890 31.180 1.00 0.00 O ATOM 173 N ASP 46 25.401 22.789 30.141 1.00 0.00 N ATOM 174 CA ASP 46 24.876 23.092 28.819 1.00 0.00 C ATOM 175 C ASP 46 23.687 22.188 28.438 1.00 0.00 C ATOM 176 O ASP 46 22.623 22.676 28.045 1.00 0.00 O ATOM 177 N ILE 47 23.856 20.877 28.605 1.00 0.00 N ATOM 178 CA ILE 47 22.814 19.909 28.278 1.00 0.00 C ATOM 179 C ILE 47 21.727 19.785 29.344 1.00 0.00 C ATOM 180 O ILE 47 20.570 19.545 29.015 1.00 0.00 O ATOM 181 N MET 48 22.108 19.927 30.614 1.00 0.00 N ATOM 182 CA MET 48 21.165 19.816 31.723 1.00 0.00 C ATOM 183 C MET 48 19.953 20.733 31.624 1.00 0.00 C ATOM 184 O MET 48 18.863 20.372 32.073 1.00 0.00 O ATOM 185 N GLY 49 20.127 21.901 31.010 1.00 0.00 N ATOM 186 CA GLY 49 19.035 22.857 30.847 1.00 0.00 C ATOM 187 C GLY 49 17.831 22.282 30.102 1.00 0.00 C ATOM 188 O GLY 49 16.718 22.807 30.219 1.00 0.00 O ATOM 189 N VAL 50 18.051 21.234 29.315 1.00 0.00 N ATOM 190 CA VAL 50 16.982 20.630 28.528 1.00 0.00 C ATOM 191 C VAL 50 16.473 19.323 29.086 1.00 0.00 C ATOM 192 O VAL 50 15.616 18.677 28.480 1.00 0.00 O ATOM 193 N TYR 51 17.005 18.908 30.223 1.00 0.00 N ATOM 194 CA TYR 51 16.567 17.647 30.792 1.00 0.00 C ATOM 195 C TYR 51 15.373 17.866 31.698 1.00 0.00 C ATOM 196 O TYR 51 15.120 18.971 32.184 1.00 0.00 O ATOM 197 N ASP 52 14.613 16.806 31.892 1.00 0.00 N ATOM 198 CA ASP 52 13.492 16.866 32.782 1.00 0.00 C ATOM 199 C ASP 52 13.987 16.384 34.145 1.00 0.00 C ATOM 200 O ASP 52 13.456 16.785 35.184 1.00 0.00 O ATOM 201 N LEU 53 15.039 15.560 34.138 1.00 0.00 N ATOM 202 CA LEU 53 15.668 15.087 35.370 1.00 0.00 C ATOM 203 C LEU 53 17.156 14.863 35.062 1.00 0.00 C ATOM 204 O LEU 53 17.504 14.368 33.998 1.00 0.00 O ATOM 205 N ILE 54 18.018 15.329 35.959 1.00 0.00 N ATOM 206 CA ILE 54 19.461 15.204 35.809 1.00 0.00 C ATOM 207 C ILE 54 19.984 14.154 36.804 1.00 0.00 C ATOM 208 O ILE 54 19.730 14.244 38.005 1.00 0.00 O ATOM 209 N ILE 55 20.637 13.119 36.281 1.00 0.00 N ATOM 210 CA ILE 55 21.191 12.063 37.107 1.00 0.00 C ATOM 211 C ILE 55 22.723 12.106 37.029 1.00 0.00 C ATOM 212 O ILE 55 23.289 12.205 35.929 1.00 0.00 O ATOM 213 N LEU 56 23.396 12.038 38.178 1.00 0.00 N ATOM 214 CA LEU 56 24.867 12.052 38.208 1.00 0.00 C ATOM 215 C LEU 56 25.401 10.667 38.518 1.00 0.00 C ATOM 216 O LEU 56 24.856 9.961 39.378 1.00 0.00 O ATOM 217 N ALA 57 26.461 10.267 37.816 1.00 0.00 N ATOM 218 CA ALA 57 27.068 8.968 38.068 1.00 0.00 C ATOM 219 C ALA 57 27.716 9.015 39.438 1.00 0.00 C ATOM 220 O ALA 57 28.148 10.084 39.871 1.00 0.00 O ATOM 221 N PRO 58 27.843 7.882 40.137 1.00 0.00 N ATOM 222 CA PRO 58 28.468 7.972 41.466 1.00 0.00 C ATOM 223 C PRO 58 29.904 8.513 41.489 1.00 0.00 C ATOM 224 O PRO 58 30.316 9.102 42.479 1.00 0.00 O ATOM 225 N GLN 59 30.637 8.387 40.386 1.00 0.00 N ATOM 226 CA GLN 59 32.010 8.902 40.325 1.00 0.00 C ATOM 227 C GLN 59 32.037 10.423 40.485 1.00 0.00 C ATOM 228 O GLN 59 33.067 10.984 40.842 1.00 0.00 O ATOM 229 N VAL 60 30.935 11.099 40.179 1.00 0.00 N ATOM 230 CA VAL 60 30.901 12.546 40.330 1.00 0.00 C ATOM 231 C VAL 60 29.902 13.040 41.377 1.00 0.00 C ATOM 232 O VAL 60 29.493 14.207 41.363 1.00 0.00 O ATOM 233 N ARG 61 29.584 12.180 42.341 1.00 0.00 N ATOM 234 CA ARG 61 28.656 12.543 43.408 1.00 0.00 C ATOM 235 C ARG 61 29.109 13.808 44.146 1.00 0.00 C ATOM 236 O ARG 61 28.290 14.655 44.482 1.00 0.00 O ATOM 237 N SER 62 30.411 13.948 44.379 1.00 0.00 N ATOM 238 CA SER 62 30.949 15.124 45.068 1.00 0.00 C ATOM 239 C SER 62 30.581 16.443 44.375 1.00 0.00 C ATOM 240 O SER 62 30.702 17.525 44.968 1.00 0.00 O ATOM 241 N TYR 63 30.187 16.360 43.104 1.00 0.00 N ATOM 242 CA TYR 63 29.803 17.540 42.331 1.00 0.00 C ATOM 243 C TYR 63 28.325 17.954 42.488 1.00 0.00 C ATOM 244 O TYR 63 27.916 18.991 41.949 1.00 0.00 O ATOM 245 N TYR 64 27.539 17.174 43.231 1.00 0.00 N ATOM 246 CA TYR 64 26.114 17.465 43.411 1.00 0.00 C ATOM 247 C TYR 64 25.763 18.929 43.756 1.00 0.00 C ATOM 248 O TYR 64 24.965 19.561 43.033 1.00 0.00 O ATOM 249 N ARG 65 26.379 19.508 44.816 1.00 0.00 N ATOM 250 CA ARG 65 26.056 20.904 45.154 1.00 0.00 C ATOM 251 C ARG 65 26.302 21.894 44.020 1.00 0.00 C ATOM 252 O ARG 65 25.503 22.802 43.824 1.00 0.00 O ATOM 253 N GLU 66 27.377 21.711 43.257 1.00 0.00 N ATOM 254 CA GLU 66 27.681 22.606 42.141 1.00 0.00 C ATOM 255 C GLU 66 26.656 22.492 41.031 1.00 0.00 C ATOM 256 O GLU 66 26.269 23.499 40.427 1.00 0.00 O ATOM 257 N MET 67 26.269 21.262 40.710 1.00 0.00 N ATOM 258 CA MET 67 25.291 21.051 39.649 1.00 0.00 C ATOM 259 C MET 67 23.900 21.570 40.047 1.00 0.00 C ATOM 260 O MET 67 23.206 22.189 39.221 1.00 0.00 O ATOM 261 N LYS 68 23.555 21.430 41.332 1.00 0.00 N ATOM 262 CA LYS 68 22.283 21.961 41.846 1.00 0.00 C ATOM 263 C LYS 68 22.241 23.497 41.688 1.00 0.00 C ATOM 264 O LYS 68 21.218 24.049 41.296 1.00 0.00 O ATOM 265 N VAL 69 23.348 24.187 41.974 1.00 0.00 N ATOM 266 CA VAL 69 23.394 25.649 41.825 1.00 0.00 C ATOM 267 C VAL 69 23.336 26.078 40.351 1.00 0.00 C ATOM 268 O VAL 69 22.789 27.125 40.015 1.00 0.00 O ATOM 269 N ASP 70 23.884 25.241 39.479 1.00 0.00 N ATOM 270 CA ASP 70 23.933 25.491 38.042 1.00 0.00 C ATOM 271 C ASP 70 22.554 25.341 37.411 1.00 0.00 C ATOM 272 O ASP 70 22.198 26.085 36.505 1.00 0.00 O ATOM 273 N ALA 71 21.796 24.353 37.887 1.00 0.00 N ATOM 274 CA ALA 71 20.440 24.050 37.395 1.00 0.00 C ATOM 275 C ALA 71 19.441 24.124 38.571 1.00 0.00 C ATOM 276 O ALA 71 18.894 23.111 38.994 1.00 0.00 O ATOM 277 N LEU 74 19.148 25.344 39.073 1.00 0.00 N ATOM 278 CA LEU 74 18.222 25.502 40.203 1.00 0.00 C ATOM 279 C LEU 74 16.769 25.132 39.898 1.00 0.00 C ATOM 280 O LEU 74 15.970 24.930 40.812 1.00 0.00 O ATOM 281 N GLY 75 16.434 25.017 38.620 1.00 0.00 N ATOM 282 CA GLY 75 15.072 24.669 38.231 1.00 0.00 C ATOM 283 C GLY 75 14.901 23.234 37.718 1.00 0.00 C ATOM 284 O GLY 75 13.915 22.931 37.040 1.00 0.00 O ATOM 285 N ILE 76 15.814 22.340 38.093 1.00 0.00 N ATOM 286 CA ILE 76 15.757 20.948 37.638 1.00 0.00 C ATOM 287 C ILE 76 16.023 20.008 38.793 1.00 0.00 C ATOM 288 O ILE 76 16.766 20.360 39.709 1.00 0.00 O ATOM 289 N GLN 77 15.333 18.845 38.828 1.00 0.00 N ATOM 290 CA GLN 77 15.598 17.910 39.923 1.00 0.00 C ATOM 291 C GLN 77 16.927 17.238 39.531 1.00 0.00 C ATOM 292 O GLN 77 17.093 16.812 38.394 1.00 0.00 O ATOM 293 N ILE 78 17.884 17.242 40.448 1.00 0.00 N ATOM 294 CA ILE 78 19.210 16.668 40.207 1.00 0.00 C ATOM 295 C ILE 78 19.537 15.655 41.288 1.00 0.00 C ATOM 296 O ILE 78 19.407 15.953 42.472 1.00 0.00 O ATOM 297 N VAL 79 19.933 14.453 40.904 1.00 0.00 N ATOM 298 CA VAL 79 20.306 13.483 41.911 1.00 0.00 C ATOM 299 C VAL 79 21.337 12.465 41.456 1.00 0.00 C ATOM 300 O VAL 79 21.614 12.333 40.274 1.00 0.00 O ATOM 301 N ALA 80 21.985 11.846 42.429 1.00 0.00 N ATOM 302 CA ALA 80 23.026 10.865 42.176 1.00 0.00 C ATOM 303 C ALA 80 22.417 9.484 42.035 1.00 0.00 C ATOM 304 O ALA 80 21.510 9.129 42.783 1.00 0.00 O ATOM 305 N THR 81 22.929 8.703 41.088 1.00 0.00 N ATOM 306 CA THR 81 22.443 7.350 40.849 1.00 0.00 C ATOM 307 C THR 81 22.969 6.456 41.950 1.00 0.00 C ATOM 308 O THR 81 24.124 6.566 42.348 1.00 0.00 O ATOM 309 N ARG 82 22.107 5.600 42.472 1.00 0.00 N ATOM 310 CA ARG 82 22.511 4.673 43.518 1.00 0.00 C ATOM 311 C ARG 82 23.706 3.839 43.023 1.00 0.00 C ATOM 312 O ARG 82 23.609 3.172 42.006 1.00 0.00 O ATOM 313 N GLY 83 24.808 3.829 43.773 1.00 0.00 N ATOM 314 CA GLY 83 26.006 3.094 43.353 1.00 0.00 C ATOM 315 C GLY 83 25.852 1.595 43.093 1.00 0.00 C ATOM 316 O GLY 83 26.498 1.049 42.191 1.00 0.00 O ATOM 317 N MET 84 24.959 0.940 43.830 1.00 0.00 N ATOM 318 CA MET 84 24.724 -0.491 43.665 1.00 0.00 C ATOM 319 C MET 84 23.931 -0.742 42.389 1.00 0.00 C ATOM 320 O MET 84 24.213 -1.679 41.636 1.00 0.00 O ATOM 321 N GLU 85 22.933 0.103 42.154 1.00 0.00 N ATOM 322 CA GLU 85 22.095 -0.006 40.964 1.00 0.00 C ATOM 323 C GLU 85 22.960 0.253 39.751 1.00 0.00 C ATOM 324 O GLU 85 22.789 -0.385 38.710 1.00 0.00 O ATOM 325 N TYR 86 23.894 1.190 39.898 1.00 0.00 N ATOM 326 CA TYR 86 24.812 1.558 38.817 1.00 0.00 C ATOM 327 C TYR 86 25.825 0.438 38.524 1.00 0.00 C ATOM 328 O TYR 86 25.975 0.009 37.375 1.00 0.00 O ATOM 329 N ILE 87 26.486 -0.051 39.572 1.00 0.00 N ATOM 330 CA ILE 87 27.462 -1.108 39.395 1.00 0.00 C ATOM 331 C ILE 87 26.884 -2.355 38.755 1.00 0.00 C ATOM 332 O ILE 87 27.510 -2.983 37.902 1.00 0.00 O ATOM 333 N HIS 88 25.670 -2.696 39.159 1.00 0.00 N ATOM 334 CA HIS 88 24.957 -3.873 38.674 1.00 0.00 C ATOM 335 C HIS 88 24.340 -3.669 37.287 1.00 0.00 C ATOM 336 O HIS 88 23.829 -4.615 36.682 1.00 0.00 O ATOM 337 N LEU 89 24.374 -2.429 36.804 1.00 0.00 N ATOM 338 CA LEU 89 23.799 -2.044 35.507 1.00 0.00 C ATOM 339 C LEU 89 22.288 -2.361 35.451 1.00 0.00 C ATOM 340 O LEU 89 21.770 -2.893 34.462 1.00 0.00 O ATOM 341 N THR 90 21.579 -1.973 36.512 1.00 0.00 N ATOM 342 CA THR 90 20.141 -2.219 36.629 1.00 0.00 C ATOM 343 C THR 90 19.337 -1.152 35.891 1.00 0.00 C ATOM 344 O THR 90 18.944 -0.132 36.478 1.00 0.00 O ATOM 345 N LYS 91 19.089 -1.420 34.609 1.00 0.00 N ATOM 346 CA LYS 91 18.335 -0.508 33.769 1.00 0.00 C ATOM 347 C LYS 91 16.941 -0.228 34.298 1.00 0.00 C ATOM 348 O LYS 91 16.503 0.926 34.298 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 348 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 36.03 86.5 170 82.5 206 ARMSMC SECONDARY STRUCTURE . . 20.84 95.0 119 85.0 140 ARMSMC SURFACE . . . . . . . . 38.52 86.6 97 80.8 120 ARMSMC BURIED . . . . . . . . 32.44 86.3 73 84.9 86 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 81 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 72 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 57 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 61 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 43 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 42 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.76 (Number of atoms: 87) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.76 87 83.7 104 CRMSCA CRN = ALL/NP . . . . . 0.0202 CRMSCA SECONDARY STRUCTURE . . 1.46 60 85.7 70 CRMSCA SURFACE . . . . . . . . 1.90 50 82.0 61 CRMSCA BURIED . . . . . . . . 1.55 37 86.0 43 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.73 348 68.0 512 CRMSMC SECONDARY STRUCTURE . . 1.44 240 69.2 347 CRMSMC SURFACE . . . . . . . . 1.88 200 67.1 298 CRMSMC BURIED . . . . . . . . 1.51 148 69.2 214 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 373 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 303 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 247 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 229 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 144 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.73 348 44.1 789 CRMSALL SECONDARY STRUCTURE . . 1.44 240 45.5 527 CRMSALL SURFACE . . . . . . . . 1.88 200 42.3 473 CRMSALL BURIED . . . . . . . . 1.51 148 46.8 316 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.410 1.000 0.500 87 83.7 104 ERRCA SECONDARY STRUCTURE . . 1.227 1.000 0.500 60 85.7 70 ERRCA SURFACE . . . . . . . . 1.501 1.000 0.500 50 82.0 61 ERRCA BURIED . . . . . . . . 1.287 1.000 0.500 37 86.0 43 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.385 1.000 0.500 348 68.0 512 ERRMC SECONDARY STRUCTURE . . 1.204 1.000 0.500 240 69.2 347 ERRMC SURFACE . . . . . . . . 1.479 1.000 0.500 200 67.1 298 ERRMC BURIED . . . . . . . . 1.258 1.000 0.500 148 69.2 214 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 373 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 303 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 247 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 229 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 144 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.385 1.000 0.500 348 44.1 789 ERRALL SECONDARY STRUCTURE . . 1.204 1.000 0.500 240 45.5 527 ERRALL SURFACE . . . . . . . . 1.479 1.000 0.500 200 42.3 473 ERRALL BURIED . . . . . . . . 1.258 1.000 0.500 148 46.8 316 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 40 70 79 85 87 87 104 DISTCA CA (P) 38.46 67.31 75.96 81.73 83.65 104 DISTCA CA (RMS) 0.72 1.07 1.29 1.59 1.76 DISTCA ALL (N) 167 283 321 341 348 348 789 DISTALL ALL (P) 21.17 35.87 40.68 43.22 44.11 789 DISTALL ALL (RMS) 0.74 1.07 1.30 1.54 1.73 DISTALL END of the results output