####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 25 ( 204), selected 25 , name T0579TS420_1-D1 # Molecule2: number of CA atoms 60 ( 911), selected 25 , name T0579-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0579TS420_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 99 - 117 4.92 10.05 LCS_AVERAGE: 28.87 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 105 - 112 1.94 14.74 LCS_AVERAGE: 11.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 107 - 111 0.91 15.92 LCS_AVERAGE: 6.73 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 25 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 94 T 94 4 7 10 3 4 4 6 7 8 8 10 10 10 10 10 12 13 13 13 14 15 15 16 LCS_GDT T 95 T 95 4 7 10 3 4 4 6 7 8 8 10 10 10 10 10 12 13 13 14 14 15 16 16 LCS_GDT V 96 V 96 4 7 10 3 4 5 6 7 8 8 10 10 10 10 11 12 13 13 14 15 15 16 17 LCS_GDT Y 97 Y 97 4 7 10 3 4 5 6 7 8 8 10 10 10 10 11 12 13 14 17 17 18 19 21 LCS_GDT M 98 M 98 4 7 18 3 4 5 5 5 8 8 10 10 10 10 11 12 13 14 17 17 18 20 21 LCS_GDT V 99 V 99 4 7 19 3 4 5 6 7 8 10 12 13 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT D 100 D 100 4 7 19 3 5 5 7 9 10 11 13 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT Y 101 Y 101 4 5 19 3 5 7 7 9 10 11 13 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT T 102 T 102 4 5 19 3 5 7 7 9 10 11 13 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT S 103 S 103 4 5 19 3 3 4 4 4 7 10 12 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT T 104 T 104 3 5 19 3 5 7 7 9 10 11 13 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT T 105 T 105 3 8 19 3 3 4 6 8 10 11 13 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT S 106 S 106 4 8 19 3 3 4 7 8 9 10 13 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT G 107 G 107 5 8 19 4 4 5 7 9 10 11 13 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT E 108 E 108 5 8 19 4 5 7 7 9 10 11 13 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT K 109 K 109 5 8 19 4 4 7 7 9 10 11 13 14 14 15 15 16 17 17 19 20 20 20 21 LCS_GDT V 110 V 110 5 8 19 4 5 5 7 9 10 11 13 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT K 111 K 111 5 8 19 3 5 7 7 9 10 11 13 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT N 112 N 112 4 8 19 3 5 7 7 9 10 11 13 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT H 113 H 113 4 7 19 2 3 4 6 8 10 11 13 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT K 114 K 114 4 7 19 3 3 4 5 8 9 9 11 14 14 15 16 16 18 18 19 20 20 20 21 LCS_GDT W 115 W 115 4 5 19 3 3 4 5 6 8 9 10 13 14 14 16 16 18 18 19 20 20 20 21 LCS_GDT V 116 V 116 4 5 19 3 3 4 5 6 8 9 10 13 14 14 16 16 18 18 19 20 20 20 21 LCS_GDT T 117 T 117 3 5 19 3 3 4 5 6 8 9 10 13 14 14 16 16 18 18 19 20 20 20 21 LCS_GDT E 118 E 118 3 3 14 0 0 3 3 3 3 4 4 4 7 7 7 14 16 17 18 20 20 20 20 LCS_AVERAGE LCS_A: 15.53 ( 6.73 11.00 28.87 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 7 7 9 10 11 13 14 14 15 16 16 18 18 19 20 20 20 21 GDT PERCENT_AT 6.67 8.33 11.67 11.67 15.00 16.67 18.33 21.67 23.33 23.33 25.00 26.67 26.67 30.00 30.00 31.67 33.33 33.33 33.33 35.00 GDT RMS_LOCAL 0.28 0.53 1.01 1.01 1.48 1.73 2.04 2.54 2.81 2.81 3.11 4.09 3.53 4.69 4.69 4.92 5.30 5.30 5.30 5.98 GDT RMS_ALL_AT 16.73 11.44 13.70 13.70 13.44 13.49 13.56 13.01 13.22 13.22 12.77 9.68 12.27 9.93 9.93 10.05 10.19 10.19 10.19 9.49 # Checking swapping # possible swapping detected: Y 97 Y 97 # possible swapping detected: D 100 D 100 # possible swapping detected: E 108 E 108 # possible swapping detected: E 118 E 118 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 94 T 94 29.995 0 0.615 0.544 30.497 0.000 0.000 LGA T 95 T 95 25.854 0 0.078 0.123 27.313 0.000 0.000 LGA V 96 V 96 22.658 0 0.605 0.550 23.978 0.000 0.000 LGA Y 97 Y 97 17.033 0 0.084 0.349 26.131 0.000 0.000 LGA M 98 M 98 12.002 0 0.078 0.961 16.697 0.119 0.060 LGA V 99 V 99 6.071 0 0.122 1.068 7.742 24.643 22.041 LGA D 100 D 100 2.438 0 0.565 0.775 6.734 61.429 42.857 LGA Y 101 Y 101 1.749 0 0.067 1.411 10.875 68.810 39.325 LGA T 102 T 102 1.313 0 0.606 1.297 2.909 73.095 73.265 LGA S 103 S 103 5.490 0 0.568 0.532 9.524 32.976 22.857 LGA T 104 T 104 1.833 0 0.151 0.167 3.267 75.119 68.571 LGA T 105 T 105 3.000 0 0.624 0.946 5.603 46.905 44.762 LGA S 106 S 106 4.174 0 0.636 0.728 6.703 56.548 43.492 LGA G 107 G 107 3.233 0 0.220 0.220 4.946 49.048 49.048 LGA E 108 E 108 2.344 0 0.182 1.227 9.406 70.833 41.217 LGA K 109 K 109 2.457 0 0.127 1.000 5.174 65.119 48.519 LGA V 110 V 110 2.202 0 0.105 1.052 6.427 73.452 51.361 LGA K 111 K 111 1.298 0 0.070 0.574 8.946 75.357 46.878 LGA N 112 N 112 1.333 0 0.633 1.100 5.977 77.262 56.726 LGA H 113 H 113 3.655 0 0.566 1.121 11.048 37.857 18.429 LGA K 114 K 114 8.158 0 0.161 1.124 11.464 5.476 7.354 LGA W 115 W 115 13.255 0 0.356 1.221 16.884 0.000 0.000 LGA V 116 V 116 17.639 0 0.608 1.374 19.764 0.000 0.000 LGA T 117 T 117 20.392 0 0.547 1.046 23.453 0.000 0.000 LGA E 118 E 118 24.401 0 0.280 0.589 30.171 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 25 100 100 100.00 203 203 100.00 60 SUMMARY(RMSD_GDC): 8.946 9.049 9.758 14.901 11.279 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 25 60 4.0 13 2.54 18.333 17.063 0.492 LGA_LOCAL RMSD: 2.544 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.010 Number of assigned atoms: 25 Std_ASGN_ATOMS RMSD: 8.946 Standard rmsd on all 25 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.008127 * X + 0.595247 * Y + -0.803502 * Z + 11.350185 Y_new = 0.365031 * X + -0.746311 * Y + -0.556572 * Z + 6.294918 Z_new = -0.930960 * X + -0.297826 * Y + -0.211218 * Z + -7.704833 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.593058 1.197033 -2.187669 [DEG: 91.2755 68.5850 -125.3442 ] ZXZ: -0.964998 1.783617 -1.880421 [DEG: -55.2903 102.1937 -107.7402 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0579TS420_1-D1 REMARK 2: T0579-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0579TS420_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 25 60 4.0 13 2.54 17.063 8.95 REMARK ---------------------------------------------------------- MOLECULE T0579TS420_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0579 REMARK MODEL 1 REMARK PARENT 1imo_A ATOM 76 N THR 94 15.479 -2.868 -13.019 1.00 0.00 N ATOM 77 CA THR 94 15.012 -4.213 -13.174 1.00 0.00 C ATOM 78 CB THR 94 15.443 -5.115 -12.053 1.00 0.00 C ATOM 79 OG1 THR 94 15.155 -6.468 -12.378 1.00 0.00 O ATOM 80 CG2 THR 94 14.710 -4.710 -10.763 1.00 0.00 C ATOM 81 C THR 94 13.516 -4.214 -13.197 1.00 0.00 C ATOM 82 O THR 94 12.893 -5.005 -13.903 1.00 0.00 O ATOM 83 N THR 95 12.915 -3.290 -12.420 1.00 0.00 N ATOM 84 CA THR 95 11.505 -3.217 -12.171 1.00 0.00 C ATOM 85 CB THR 95 11.092 -1.966 -11.443 1.00 0.00 C ATOM 86 OG1 THR 95 11.778 -1.858 -10.202 1.00 0.00 O ATOM 87 CG2 THR 95 9.576 -2.028 -11.199 1.00 0.00 C ATOM 88 C THR 95 10.744 -3.286 -13.454 1.00 0.00 C ATOM 89 O THR 95 11.104 -2.663 -14.451 1.00 0.00 O ATOM 90 N VAL 96 9.723 -4.169 -13.469 1.00 0.00 N ATOM 91 CA VAL 96 8.817 -4.342 -14.569 1.00 0.00 C ATOM 92 CB VAL 96 8.081 -5.648 -14.522 1.00 0.00 C ATOM 93 CG1 VAL 96 9.099 -6.791 -14.651 1.00 0.00 C ATOM 94 CG2 VAL 96 7.234 -5.698 -13.238 1.00 0.00 C ATOM 95 C VAL 96 7.777 -3.260 -14.640 1.00 0.00 C ATOM 96 O VAL 96 7.491 -2.746 -15.719 1.00 0.00 O ATOM 97 N TYR 97 7.164 -2.885 -13.497 1.00 0.00 N ATOM 98 CA TYR 97 6.080 -1.939 -13.532 1.00 0.00 C ATOM 99 CB TYR 97 4.707 -2.544 -13.178 1.00 0.00 C ATOM 100 CG TYR 97 4.211 -3.329 -14.337 1.00 0.00 C ATOM 101 CD1 TYR 97 4.887 -4.443 -14.775 1.00 0.00 C ATOM 102 CD2 TYR 97 3.042 -2.962 -14.964 1.00 0.00 C ATOM 103 CE1 TYR 97 4.413 -5.165 -15.847 1.00 0.00 C ATOM 104 CE2 TYR 97 2.564 -3.681 -16.033 1.00 0.00 C ATOM 105 CZ TYR 97 3.252 -4.783 -16.478 1.00 0.00 C ATOM 106 OH TYR 97 2.758 -5.519 -17.576 1.00 0.00 O ATOM 107 C TYR 97 6.299 -0.888 -12.503 1.00 0.00 C ATOM 108 O TYR 97 7.024 -1.087 -11.533 1.00 0.00 O ATOM 109 N MET 98 5.677 0.288 -12.716 1.00 0.00 N ATOM 110 CA MET 98 5.743 1.330 -11.740 1.00 0.00 C ATOM 111 CB MET 98 6.665 2.500 -12.128 1.00 0.00 C ATOM 112 CG MET 98 6.869 3.515 -10.997 1.00 0.00 C ATOM 113 SD MET 98 7.970 4.904 -11.402 1.00 0.00 S ATOM 114 CE MET 98 8.216 5.412 -9.675 1.00 0.00 C ATOM 115 C MET 98 4.357 1.859 -11.617 1.00 0.00 C ATOM 116 O MET 98 3.667 2.068 -12.613 1.00 0.00 O ATOM 117 N VAL 99 3.892 2.091 -10.382 1.00 0.00 N ATOM 118 CA VAL 99 2.542 2.544 -10.302 1.00 0.00 C ATOM 119 CB VAL 99 1.830 2.074 -9.069 1.00 0.00 C ATOM 120 CG1 VAL 99 0.413 2.678 -9.063 1.00 0.00 C ATOM 121 CG2 VAL 99 1.850 0.536 -9.060 1.00 0.00 C ATOM 122 C VAL 99 2.542 4.035 -10.313 1.00 0.00 C ATOM 123 O VAL 99 3.219 4.682 -9.516 1.00 0.00 O ATOM 124 N ASP 100 1.773 4.595 -11.263 1.00 0.00 N ATOM 125 CA ASP 100 1.520 5.997 -11.418 1.00 0.00 C ATOM 126 CB ASP 100 0.994 6.628 -10.115 1.00 0.00 C ATOM 127 CG ASP 100 0.457 8.019 -10.411 1.00 0.00 C ATOM 128 OD1 ASP 100 0.032 8.252 -11.574 1.00 0.00 O ATOM 129 OD2 ASP 100 0.481 8.873 -9.483 1.00 0.00 O ATOM 130 C ASP 100 2.745 6.753 -11.849 1.00 0.00 C ATOM 131 O ASP 100 2.683 7.966 -12.021 1.00 0.00 O ATOM 132 N TYR 101 3.891 6.092 -12.075 1.00 0.00 N ATOM 133 CA TYR 101 5.012 6.848 -12.564 1.00 0.00 C ATOM 134 CB TYR 101 5.952 7.431 -11.486 1.00 0.00 C ATOM 135 CG TYR 101 5.244 8.526 -10.763 1.00 0.00 C ATOM 136 CD1 TYR 101 4.470 8.242 -9.662 1.00 0.00 C ATOM 137 CD2 TYR 101 5.349 9.833 -11.185 1.00 0.00 C ATOM 138 CE1 TYR 101 3.818 9.248 -8.991 1.00 0.00 C ATOM 139 CE2 TYR 101 4.698 10.845 -10.515 1.00 0.00 C ATOM 140 CZ TYR 101 3.931 10.552 -9.412 1.00 0.00 C ATOM 141 OH TYR 101 3.256 11.577 -8.713 1.00 0.00 O ATOM 142 C TYR 101 5.827 5.933 -13.414 1.00 0.00 C ATOM 143 O TYR 101 5.647 4.716 -13.382 1.00 0.00 O ATOM 144 N THR 102 6.724 6.511 -14.235 1.00 0.00 N ATOM 145 CA THR 102 7.573 5.714 -15.069 1.00 0.00 C ATOM 146 CB THR 102 7.179 5.812 -16.510 1.00 0.00 C ATOM 147 OG1 THR 102 7.908 4.877 -17.288 1.00 0.00 O ATOM 148 CG2 THR 102 7.466 7.245 -16.985 1.00 0.00 C ATOM 149 C THR 102 8.939 6.300 -14.966 1.00 0.00 C ATOM 150 O THR 102 9.933 5.662 -15.305 1.00 0.00 O ATOM 151 N SER 103 9.004 7.515 -14.391 1.00 0.00 N ATOM 152 CA SER 103 10.189 8.317 -14.368 1.00 0.00 C ATOM 153 CB SER 103 10.041 9.530 -13.438 1.00 0.00 C ATOM 154 OG SER 103 8.988 10.366 -13.894 1.00 0.00 O ATOM 155 C SER 103 11.326 7.514 -13.856 1.00 0.00 C ATOM 156 O SER 103 12.374 7.476 -14.499 1.00 0.00 O ATOM 157 N THR 104 11.124 6.799 -12.734 1.00 0.00 N ATOM 158 CA THR 104 12.199 6.051 -12.155 1.00 0.00 C ATOM 159 CB THR 104 11.786 5.262 -10.947 1.00 0.00 C ATOM 160 OG1 THR 104 10.809 4.294 -11.291 1.00 0.00 O ATOM 161 CG2 THR 104 11.234 6.235 -9.894 1.00 0.00 C ATOM 162 C THR 104 12.685 5.113 -13.204 1.00 0.00 C ATOM 163 O THR 104 13.887 4.994 -13.421 1.00 0.00 O ATOM 164 N THR 105 11.779 4.423 -13.912 1.00 0.00 N ATOM 165 CA THR 105 12.352 3.691 -14.998 1.00 0.00 C ATOM 166 CB THR 105 12.974 2.378 -14.632 1.00 0.00 C ATOM 167 OG1 THR 105 13.724 1.874 -15.728 1.00 0.00 O ATOM 168 CG2 THR 105 11.875 1.390 -14.247 1.00 0.00 C ATOM 169 C THR 105 11.352 3.462 -16.070 1.00 0.00 C ATOM 170 O THR 105 10.248 2.976 -15.827 1.00 0.00 O ATOM 171 N SER 106 11.723 3.849 -17.302 1.00 0.00 N ATOM 172 CA SER 106 10.874 3.518 -18.393 1.00 0.00 C ATOM 173 CB SER 106 11.279 4.154 -19.730 1.00 0.00 C ATOM 174 OG SER 106 11.208 5.568 -19.636 1.00 0.00 O ATOM 175 C SER 106 11.121 2.063 -18.513 1.00 0.00 C ATOM 176 O SER 106 12.139 1.574 -18.034 1.00 0.00 O ATOM 177 N GLY 107 10.216 1.312 -19.141 1.00 0.00 N ATOM 178 CA GLY 107 10.444 -0.099 -19.179 1.00 0.00 C ATOM 179 C GLY 107 9.542 -0.650 -18.143 1.00 0.00 C ATOM 180 O GLY 107 9.138 -1.811 -18.197 1.00 0.00 O ATOM 181 N GLU 108 9.215 0.204 -17.154 1.00 0.00 N ATOM 182 CA GLU 108 8.228 -0.150 -16.188 1.00 0.00 C ATOM 183 CB GLU 108 8.253 0.666 -14.884 1.00 0.00 C ATOM 184 CG GLU 108 9.246 0.178 -13.837 1.00 0.00 C ATOM 185 CD GLU 108 9.309 1.241 -12.743 1.00 0.00 C ATOM 186 OE1 GLU 108 9.377 2.450 -13.095 1.00 0.00 O ATOM 187 OE2 GLU 108 9.289 0.860 -11.543 1.00 0.00 O ATOM 188 C GLU 108 6.957 0.199 -16.856 1.00 0.00 C ATOM 189 O GLU 108 6.959 0.835 -17.908 1.00 0.00 O ATOM 190 N LYS 109 5.827 -0.255 -16.305 1.00 0.00 N ATOM 191 CA LYS 109 4.622 0.157 -16.945 1.00 0.00 C ATOM 192 CB LYS 109 3.632 -0.987 -17.200 1.00 0.00 C ATOM 193 CG LYS 109 2.466 -0.558 -18.089 1.00 0.00 C ATOM 194 CD LYS 109 1.661 -1.739 -18.630 1.00 0.00 C ATOM 195 CE LYS 109 2.484 -2.672 -19.518 1.00 0.00 C ATOM 196 NZ LYS 109 1.641 -3.792 -19.994 1.00 0.00 N ATOM 197 C LYS 109 3.970 1.122 -16.023 1.00 0.00 C ATOM 198 O LYS 109 3.869 0.859 -14.827 1.00 0.00 O ATOM 199 N VAL 110 3.535 2.285 -16.547 1.00 0.00 N ATOM 200 CA VAL 110 2.861 3.202 -15.681 1.00 0.00 C ATOM 201 CB VAL 110 2.905 4.635 -16.138 1.00 0.00 C ATOM 202 CG1 VAL 110 4.350 5.141 -15.996 1.00 0.00 C ATOM 203 CG2 VAL 110 2.393 4.725 -17.585 1.00 0.00 C ATOM 204 C VAL 110 1.448 2.736 -15.619 1.00 0.00 C ATOM 205 O VAL 110 0.673 2.862 -16.565 1.00 0.00 O ATOM 206 N LYS 111 1.084 2.156 -14.468 1.00 0.00 N ATOM 207 CA LYS 111 -0.218 1.590 -14.325 1.00 0.00 C ATOM 208 CB LYS 111 -0.172 0.073 -14.101 1.00 0.00 C ATOM 209 CG LYS 111 0.731 -0.301 -12.925 1.00 0.00 C ATOM 210 CD LYS 111 0.643 -1.769 -12.509 1.00 0.00 C ATOM 211 CE LYS 111 1.602 -2.122 -11.371 1.00 0.00 C ATOM 212 NZ LYS 111 1.461 -3.548 -11.011 1.00 0.00 N ATOM 213 C LYS 111 -0.835 2.193 -13.121 1.00 0.00 C ATOM 214 O LYS 111 -0.180 2.894 -12.351 1.00 0.00 O ATOM 215 N ASN 112 -2.146 1.947 -12.954 1.00 0.00 N ATOM 216 CA ASN 112 -2.841 2.455 -11.813 1.00 0.00 C ATOM 217 CB ASN 112 -4.117 3.242 -12.156 1.00 0.00 C ATOM 218 CG ASN 112 -4.537 4.018 -10.911 1.00 0.00 C ATOM 219 OD1 ASN 112 -3.700 4.356 -10.076 1.00 0.00 O ATOM 220 ND2 ASN 112 -5.860 4.299 -10.772 1.00 0.00 N ATOM 221 C ASN 112 -3.243 1.274 -10.990 1.00 0.00 C ATOM 222 O ASN 112 -3.064 0.126 -11.395 1.00 0.00 O ATOM 223 N HIS 113 -3.779 1.536 -9.783 1.00 0.00 N ATOM 224 CA HIS 113 -4.150 0.476 -8.894 1.00 0.00 C ATOM 225 ND1 HIS 113 -5.963 3.155 -8.161 1.00 0.00 N ATOM 226 CG HIS 113 -5.971 1.840 -7.747 1.00 0.00 C ATOM 227 CB HIS 113 -4.735 1.003 -7.567 1.00 0.00 C ATOM 228 NE2 HIS 113 -8.094 2.603 -7.837 1.00 0.00 N ATOM 229 CD2 HIS 113 -7.279 1.521 -7.556 1.00 0.00 C ATOM 230 CE1 HIS 113 -7.258 3.561 -8.196 1.00 0.00 C ATOM 231 C HIS 113 -5.180 -0.347 -9.587 1.00 0.00 C ATOM 232 O HIS 113 -5.061 -1.570 -9.666 1.00 0.00 O ATOM 233 N LYS 114 -6.213 0.304 -10.147 1.00 0.00 N ATOM 234 CA LYS 114 -7.188 -0.480 -10.832 1.00 0.00 C ATOM 235 CB LYS 114 -8.631 0.033 -10.681 1.00 0.00 C ATOM 236 CG LYS 114 -9.676 -0.870 -11.347 1.00 0.00 C ATOM 237 CD LYS 114 -11.111 -0.581 -10.896 1.00 0.00 C ATOM 238 CE LYS 114 -12.166 -1.461 -11.572 1.00 0.00 C ATOM 239 NZ LYS 114 -12.289 -1.092 -13.000 1.00 0.00 N ATOM 240 C LYS 114 -6.824 -0.398 -12.269 1.00 0.00 C ATOM 241 O LYS 114 -7.193 0.547 -12.963 1.00 0.00 O ATOM 242 N TRP 115 -6.076 -1.405 -12.744 1.00 0.00 N ATOM 243 CA TRP 115 -5.674 -1.439 -14.111 1.00 0.00 C ATOM 244 CB TRP 115 -4.238 -0.943 -14.369 1.00 0.00 C ATOM 245 CG TRP 115 -3.855 -0.988 -15.826 1.00 0.00 C ATOM 246 CD2 TRP 115 -4.352 -0.062 -16.803 1.00 0.00 C ATOM 247 CD1 TRP 115 -3.067 -1.870 -16.498 1.00 0.00 C ATOM 248 NE1 TRP 115 -3.028 -1.547 -17.831 1.00 0.00 N ATOM 249 CE2 TRP 115 -3.817 -0.441 -18.035 1.00 0.00 C ATOM 250 CE3 TRP 115 -5.184 1.011 -16.680 1.00 0.00 C ATOM 251 CZ2 TRP 115 -4.108 0.252 -19.172 1.00 0.00 C ATOM 252 CZ3 TRP 115 -5.477 1.703 -17.831 1.00 0.00 C ATOM 253 CH2 TRP 115 -4.950 1.331 -19.051 1.00 0.00 C ATOM 254 C TRP 115 -5.746 -2.865 -14.515 1.00 0.00 C ATOM 255 O TRP 115 -6.822 -3.410 -14.755 1.00 0.00 O ATOM 256 N VAL 116 -4.569 -3.505 -14.573 1.00 0.00 N ATOM 257 CA VAL 116 -4.476 -4.861 -15.003 1.00 0.00 C ATOM 258 CB VAL 116 -3.082 -5.408 -14.920 1.00 0.00 C ATOM 259 CG1 VAL 116 -3.134 -6.894 -15.300 1.00 0.00 C ATOM 260 CG2 VAL 116 -2.155 -4.586 -15.831 1.00 0.00 C ATOM 261 C VAL 116 -5.327 -5.718 -14.124 1.00 0.00 C ATOM 262 O VAL 116 -6.005 -6.617 -14.619 1.00 0.00 O ATOM 263 N THR 117 -5.338 -5.446 -12.801 1.00 0.00 N ATOM 264 CA THR 117 -6.061 -6.301 -11.902 1.00 0.00 C ATOM 265 CB THR 117 -5.987 -5.857 -10.457 1.00 0.00 C ATOM 266 OG1 THR 117 -6.631 -6.806 -9.618 1.00 0.00 O ATOM 267 CG2 THR 117 -6.626 -4.464 -10.283 1.00 0.00 C ATOM 268 C THR 117 -7.493 -6.341 -12.325 1.00 0.00 C ATOM 269 O THR 117 -8.064 -7.428 -12.429 1.00 0.00 O ATOM 270 N GLU 118 -8.076 -5.153 -12.602 1.00 0.00 N ATOM 271 CA GLU 118 -9.439 -5.005 -13.031 1.00 0.00 C ATOM 272 CB GLU 118 -9.598 -5.191 -14.554 1.00 0.00 C ATOM 273 CG GLU 118 -9.093 -6.553 -15.019 1.00 0.00 C ATOM 274 CD GLU 118 -9.211 -6.596 -16.530 1.00 0.00 C ATOM 275 OE1 GLU 118 -9.830 -5.655 -17.096 1.00 0.00 O ATOM 276 OE2 GLU 118 -8.685 -7.568 -17.136 1.00 0.00 O ATOM 277 C GLU 118 -10.376 -5.974 -12.286 1.00 0.00 C ATOM 278 O GLU 118 -10.925 -5.570 -11.225 1.00 0.00 O ATOM 279 OXT GLU 118 -10.557 -7.127 -12.768 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 203 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 118 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 66 ARMSMC SURFACE . . . . . . . . 0.00 0.0 0 0.0 80 ARMSMC BURIED . . . . . . . . 0.00 0.0 0 0.0 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 51 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 44 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 25 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 18 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.95 (Number of atoms: 25) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.95 25 41.7 60 CRMSCA CRN = ALL/NP . . . . . 0.3578 CRMSCA SECONDARY STRUCTURE . . 6.94 18 54.5 33 CRMSCA SURFACE . . . . . . . . 9.86 17 41.5 41 CRMSCA BURIED . . . . . . . . 6.61 8 42.1 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.11 124 42.0 295 CRMSMC SECONDARY STRUCTURE . . 7.12 90 54.9 164 CRMSMC SURFACE . . . . . . . . 10.01 84 41.6 202 CRMSMC BURIED . . . . . . . . 6.83 40 43.0 93 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.50 103 15.4 671 CRMSSC RELIABLE SIDE CHAINS . 10.67 89 13.9 641 CRMSSC SECONDARY STRUCTURE . . 9.65 84 21.2 396 CRMSSC SURFACE . . . . . . . . 10.81 66 14.1 467 CRMSSC BURIED . . . . . . . . 9.91 37 18.1 204 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.82 203 22.3 911 CRMSALL SECONDARY STRUCTURE . . 8.52 156 29.5 528 CRMSALL SURFACE . . . . . . . . 10.41 134 21.2 631 CRMSALL BURIED . . . . . . . . 8.56 69 24.6 280 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.666 1.000 0.500 25 41.7 60 ERRCA SECONDARY STRUCTURE . . 6.158 1.000 0.500 18 54.5 33 ERRCA SURFACE . . . . . . . . 8.400 1.000 0.500 17 41.5 41 ERRCA BURIED . . . . . . . . 6.106 1.000 0.500 8 42.1 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.824 1.000 0.500 124 42.0 295 ERRMC SECONDARY STRUCTURE . . 6.314 1.000 0.500 90 54.9 164 ERRMC SURFACE . . . . . . . . 8.591 1.000 0.500 84 41.6 202 ERRMC BURIED . . . . . . . . 6.212 1.000 0.500 40 43.0 93 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.436 1.000 0.500 103 15.4 671 ERRSC RELIABLE SIDE CHAINS . 9.637 1.000 0.500 89 13.9 641 ERRSC SECONDARY STRUCTURE . . 8.728 1.000 0.500 84 21.2 396 ERRSC SURFACE . . . . . . . . 9.448 1.000 0.500 66 14.1 467 ERRSC BURIED . . . . . . . . 9.414 1.000 0.500 37 18.1 204 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.612 1.000 0.500 203 22.3 911 ERRALL SECONDARY STRUCTURE . . 7.556 1.000 0.500 156 29.5 528 ERRALL SURFACE . . . . . . . . 9.015 1.000 0.500 134 21.2 631 ERRALL BURIED . . . . . . . . 7.830 1.000 0.500 69 24.6 280 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 3 5 7 18 25 60 DISTCA CA (P) 0.00 5.00 8.33 11.67 30.00 60 DISTCA CA (RMS) 0.00 1.91 2.24 3.04 5.79 DISTCA ALL (N) 1 11 21 46 135 203 911 DISTALL ALL (P) 0.11 1.21 2.31 5.05 14.82 911 DISTALL ALL (RMS) 0.99 1.70 2.11 3.27 6.25 DISTALL END of the results output