####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 59 ( 236), selected 59 , name T0579TS328_1-D1 # Molecule2: number of CA atoms 60 ( 911), selected 59 , name T0579-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0579TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 95 - 113 4.86 29.54 LCS_AVERAGE: 26.95 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 3 - 11 1.97 36.46 LCS_AVERAGE: 11.78 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 3 - 8 1.00 34.28 LONGEST_CONTINUOUS_SEGMENT: 6 6 - 11 0.89 37.27 LONGEST_CONTINUOUS_SEGMENT: 6 20 - 25 0.95 26.29 LONGEST_CONTINUOUS_SEGMENT: 6 94 - 99 0.97 32.47 LCS_AVERAGE: 7.80 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 59 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 1 M 1 4 4 11 3 4 4 4 4 4 8 8 9 10 10 11 11 12 13 16 18 21 24 25 LCS_GDT K 2 K 2 4 4 16 3 4 4 4 6 7 7 7 8 10 10 11 14 14 16 19 22 23 24 25 LCS_GDT V 3 V 3 6 9 16 3 4 6 7 8 8 9 9 11 12 12 14 15 15 17 20 22 23 24 25 LCS_GDT G 4 G 4 6 9 16 3 4 6 7 8 8 9 10 11 13 14 14 15 15 17 20 22 23 24 25 LCS_GDT S 5 S 5 6 9 16 3 4 6 7 8 8 9 10 11 13 14 14 15 15 17 20 22 23 24 25 LCS_GDT Q 6 Q 6 6 9 16 3 5 6 7 8 8 9 11 11 13 14 14 15 15 17 20 22 23 24 25 LCS_GDT V 7 V 7 6 9 16 3 5 6 7 8 9 10 11 11 13 14 14 15 15 17 20 22 23 24 25 LCS_GDT I 8 I 8 6 9 16 3 5 6 7 8 9 10 11 11 13 14 14 15 15 17 20 22 23 24 25 LCS_GDT I 9 I 9 6 9 16 3 5 6 7 8 9 10 11 11 13 14 14 15 15 17 20 22 23 24 25 LCS_GDT N 10 N 10 6 9 16 3 5 6 7 8 9 10 11 11 13 14 14 15 15 17 20 22 23 24 25 LCS_GDT T 11 T 11 6 9 16 3 5 6 6 8 9 10 11 11 13 14 14 15 15 17 20 21 22 23 24 LCS_GDT S 12 S 12 3 8 16 0 3 3 4 7 9 10 11 11 13 14 14 15 15 17 20 21 22 23 24 LCS_GDT H 13 H 13 3 8 16 3 3 3 6 8 9 10 11 11 13 14 14 15 15 17 20 21 22 23 24 LCS_GDT M 14 M 14 3 8 16 3 3 3 6 8 8 10 11 11 13 14 14 15 15 17 18 19 21 22 24 LCS_GDT K 15 K 15 3 7 16 3 3 3 4 7 9 10 11 11 13 14 14 15 15 17 20 22 23 24 25 LCS_GDT G 16 G 16 3 7 16 3 3 3 4 7 9 10 11 11 13 14 14 15 15 17 20 22 23 24 25 LCS_GDT M 17 M 17 3 4 16 3 3 3 3 4 5 7 9 11 13 14 14 15 15 17 20 22 23 24 25 LCS_GDT K 18 K 18 4 6 16 3 3 4 4 6 7 8 8 9 10 12 14 15 15 17 20 22 23 24 25 LCS_GDT G 19 G 19 4 7 16 3 3 4 5 7 8 9 10 10 11 12 13 14 15 17 20 22 23 24 25 LCS_GDT A 20 A 20 6 7 16 3 4 6 6 7 8 9 10 10 11 12 14 15 15 17 20 22 23 24 25 LCS_GDT E 21 E 21 6 7 16 3 5 6 6 7 8 9 10 10 11 12 12 14 15 17 20 22 23 24 25 LCS_GDT A 22 A 22 6 7 13 3 5 6 6 7 8 9 10 10 11 12 12 12 14 16 20 22 23 24 25 LCS_GDT T 23 T 23 6 7 13 3 5 6 6 7 8 9 10 10 11 12 12 12 14 16 20 22 23 24 25 LCS_GDT V 24 V 24 6 7 13 3 5 6 6 7 8 9 10 10 11 12 12 12 14 16 20 22 23 24 25 LCS_GDT T 25 T 25 6 7 13 3 5 6 6 7 8 8 10 10 11 12 12 12 14 16 20 22 23 24 25 LCS_GDT G 26 G 26 4 7 13 3 3 4 5 6 8 9 10 10 11 12 13 13 16 18 20 22 23 24 25 LCS_GDT A 27 A 27 3 5 13 3 3 3 4 5 8 9 10 10 11 12 13 14 17 18 20 21 22 24 25 LCS_GDT Y 28 Y 28 3 4 13 0 3 4 5 6 8 9 10 10 11 12 12 12 12 15 15 21 23 24 25 LCS_GDT D 29 D 29 3 3 13 0 3 3 3 3 3 4 4 9 11 12 12 14 14 16 19 22 23 24 25 LCS_GDT T 94 T 94 6 7 17 4 4 6 6 6 8 9 9 11 12 14 14 16 19 20 21 22 22 23 24 LCS_GDT T 95 T 95 6 7 19 4 5 6 6 6 8 9 11 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT V 96 V 96 6 7 19 4 4 6 6 6 8 9 11 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT Y 97 Y 97 6 7 19 3 5 6 7 9 9 9 11 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT M 98 M 98 6 8 19 3 4 6 7 9 9 9 10 12 12 15 17 17 19 20 21 22 22 23 24 LCS_GDT V 99 V 99 6 8 19 4 5 6 7 9 9 9 10 12 12 15 17 17 19 20 21 22 22 23 24 LCS_GDT D 100 D 100 4 8 19 4 5 5 7 9 9 9 10 12 12 13 14 17 19 20 21 22 22 23 24 LCS_GDT Y 101 Y 101 4 8 19 3 5 5 7 9 9 9 10 12 12 15 17 17 19 20 21 22 22 23 24 LCS_GDT T 102 T 102 4 8 19 4 5 5 7 9 9 9 10 12 12 13 15 17 19 20 21 22 22 23 24 LCS_GDT S 103 S 103 4 8 19 3 3 4 5 5 7 8 10 12 12 15 17 17 19 20 21 22 22 23 24 LCS_GDT T 104 T 104 4 8 19 3 3 5 7 9 9 9 10 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT T 105 T 105 4 8 19 4 5 5 7 9 9 9 11 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT S 106 S 106 4 8 19 3 4 5 7 9 9 9 11 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT G 107 G 107 5 8 19 3 4 5 6 8 9 9 11 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT E 108 E 108 5 8 19 4 4 5 6 8 9 9 11 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT K 109 K 109 5 8 19 4 4 5 6 8 9 9 11 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT V 110 V 110 5 8 19 4 4 5 6 8 9 9 11 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT K 111 K 111 5 8 19 4 4 5 6 8 9 9 11 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT N 112 N 112 3 8 19 3 3 3 4 8 9 9 11 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT H 113 H 113 3 8 19 3 3 5 6 8 8 9 11 13 13 15 17 17 19 20 21 22 22 23 24 LCS_GDT K 114 K 114 5 6 18 3 3 5 6 6 8 9 9 10 11 12 14 16 19 20 21 22 22 23 24 LCS_GDT W 115 W 115 5 6 15 4 4 5 6 6 8 9 9 10 11 12 13 15 17 20 21 22 22 23 24 LCS_GDT V 116 V 116 5 6 15 4 4 5 6 6 7 8 9 10 11 12 12 13 14 16 17 18 20 23 23 LCS_GDT T 117 T 117 5 6 15 4 4 5 6 6 7 8 9 10 11 12 12 13 14 16 17 18 20 23 23 LCS_GDT E 118 E 118 5 6 15 4 4 5 6 6 7 8 9 10 11 12 12 13 14 14 15 18 18 19 21 LCS_GDT D 119 D 119 3 6 14 3 3 4 6 6 7 8 9 10 11 12 12 13 14 14 15 16 18 20 20 LCS_GDT E 120 E 120 4 5 13 4 4 4 4 5 5 5 7 7 9 10 11 11 13 13 13 14 17 18 18 LCS_GDT L 121 L 121 4 5 12 4 4 4 4 5 5 5 7 8 9 10 11 11 13 13 13 14 15 17 18 LCS_GDT S 122 S 122 4 5 12 4 4 4 4 5 5 5 7 8 9 10 11 11 13 13 13 14 14 14 17 LCS_GDT A 123 A 123 4 5 12 4 4 4 4 5 5 5 7 8 9 10 11 11 13 13 13 14 14 14 14 LCS_AVERAGE LCS_A: 15.51 ( 7.80 11.78 26.95 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 9 9 10 11 13 13 15 17 17 19 20 21 22 23 24 25 GDT PERCENT_AT 6.67 8.33 10.00 11.67 15.00 15.00 16.67 18.33 21.67 21.67 25.00 28.33 28.33 31.67 33.33 35.00 36.67 38.33 40.00 41.67 GDT RMS_LOCAL 0.34 0.47 0.89 1.32 1.63 1.63 2.50 2.78 3.34 3.33 4.19 4.38 4.38 4.86 5.15 5.37 5.66 6.97 7.11 7.35 GDT RMS_ALL_AT 31.86 33.97 37.27 34.94 33.18 33.18 36.46 35.88 28.27 35.30 28.76 28.93 28.93 29.54 29.01 29.33 29.73 30.32 30.13 29.88 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 1 M 1 22.219 4 0.069 0.069 24.936 0.000 0.000 LGA K 2 K 2 17.587 5 0.021 0.021 18.629 0.000 0.000 LGA V 3 V 3 13.327 3 0.043 0.043 15.126 0.000 0.000 LGA G 4 G 4 10.424 0 0.700 0.700 11.239 5.476 5.476 LGA S 5 S 5 7.051 2 0.141 0.141 8.930 9.286 6.190 LGA Q 6 Q 6 3.630 5 0.026 0.026 4.308 54.524 24.233 LGA V 7 V 7 1.753 3 0.047 0.047 2.195 68.810 39.320 LGA I 8 I 8 2.059 4 0.055 0.055 2.838 64.881 32.440 LGA I 9 I 9 1.734 4 0.073 0.073 1.880 72.857 36.429 LGA N 10 N 10 2.646 4 0.579 0.579 5.236 49.524 24.762 LGA T 11 T 11 2.371 3 0.067 0.067 3.241 67.262 38.435 LGA S 12 S 12 3.364 2 0.632 0.632 3.364 61.429 40.952 LGA H 13 H 13 2.503 6 0.605 0.605 3.345 55.357 22.143 LGA M 14 M 14 3.845 4 0.030 0.030 4.171 45.238 22.619 LGA K 15 K 15 2.726 5 0.330 0.330 5.691 52.500 23.333 LGA G 16 G 16 2.989 0 0.645 0.645 2.989 66.905 66.905 LGA M 17 M 17 5.253 4 0.659 0.659 8.205 21.905 10.952 LGA K 18 K 18 9.807 5 0.081 0.081 10.848 1.905 0.847 LGA G 19 G 19 13.256 0 0.672 0.672 13.256 0.000 0.000 LGA A 20 A 20 10.741 1 0.053 0.053 11.795 0.000 0.000 LGA E 21 E 21 11.717 5 0.145 0.145 11.717 0.000 0.000 LGA A 22 A 22 11.653 1 0.105 0.105 12.910 0.000 0.000 LGA T 23 T 23 11.847 3 0.055 0.055 12.487 0.000 0.000 LGA V 24 V 24 15.085 3 0.102 0.102 15.085 0.000 0.000 LGA T 25 T 25 14.285 3 0.649 0.649 15.846 0.000 0.000 LGA G 26 G 26 19.809 0 0.071 0.071 21.092 0.000 0.000 LGA A 27 A 27 23.566 1 0.619 0.619 24.048 0.000 0.000 LGA Y 28 Y 28 26.450 8 0.548 0.548 27.879 0.000 0.000 LGA D 29 D 29 26.103 4 0.419 0.419 27.133 0.000 0.000 LGA T 94 T 94 39.769 3 0.073 0.073 40.109 0.000 0.000 LGA T 95 T 95 35.559 3 0.027 0.027 38.599 0.000 0.000 LGA V 96 V 96 37.647 3 0.152 0.152 37.647 0.000 0.000 LGA Y 97 Y 97 37.973 8 0.081 0.081 38.900 0.000 0.000 LGA M 98 M 98 36.115 4 0.035 0.035 36.958 0.000 0.000 LGA V 99 V 99 39.182 3 0.178 0.178 39.182 0.000 0.000 LGA D 100 D 100 38.537 4 0.094 0.094 41.874 0.000 0.000 LGA Y 101 Y 101 44.394 8 0.044 0.044 44.675 0.000 0.000 LGA T 102 T 102 47.628 3 0.196 0.196 52.082 0.000 0.000 LGA S 103 S 103 53.566 2 0.373 0.373 56.691 0.000 0.000 LGA T 104 T 104 56.403 3 0.669 0.669 57.664 0.000 0.000 LGA T 105 T 105 60.368 3 0.621 0.621 60.368 0.000 0.000 LGA S 106 S 106 55.639 2 0.588 0.588 57.141 0.000 0.000 LGA G 107 G 107 52.756 0 0.050 0.050 53.418 0.000 0.000 LGA E 108 E 108 51.689 5 0.437 0.437 53.046 0.000 0.000 LGA K 109 K 109 49.175 5 0.211 0.211 49.627 0.000 0.000 LGA V 110 V 110 48.624 3 0.118 0.118 49.534 0.000 0.000 LGA K 111 K 111 46.893 5 0.617 0.617 49.538 0.000 0.000 LGA N 112 N 112 46.336 4 0.291 0.291 47.865 0.000 0.000 LGA H 113 H 113 47.689 6 0.584 0.584 48.871 0.000 0.000 LGA K 114 K 114 52.269 5 0.096 0.096 54.427 0.000 0.000 LGA W 115 W 115 53.347 10 0.051 0.051 55.996 0.000 0.000 LGA V 116 V 116 54.531 3 0.044 0.044 54.531 0.000 0.000 LGA T 117 T 117 52.882 3 0.118 0.118 53.766 0.000 0.000 LGA E 118 E 118 53.123 5 0.634 0.634 53.209 0.000 0.000 LGA D 119 D 119 55.096 4 0.587 0.587 56.986 0.000 0.000 LGA E 120 E 120 55.112 5 0.655 0.655 55.112 0.000 0.000 LGA L 121 L 121 50.581 4 0.029 0.029 52.600 0.000 0.000 LGA S 122 S 122 48.302 2 0.107 0.107 48.685 0.000 0.000 LGA A 123 A 123 45.882 1 0.019 0.019 47.159 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 59 236 236 100.00 447 236 52.80 60 SUMMARY(RMSD_GDC): 21.678 21.766 21.766 11.631 6.584 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 59 60 4.0 11 2.78 18.333 17.009 0.382 LGA_LOCAL RMSD: 2.777 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 35.883 Number of assigned atoms: 59 Std_ASGN_ATOMS RMSD: 21.678 Standard rmsd on all 59 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.693022 * X + -0.708517 * Y + -0.133132 * Z + 62.943008 Y_new = 0.427195 * X + -0.254847 * Y + -0.867501 * Z + 154.883286 Z_new = 0.580711 * X + -0.658071 * Y + 0.479289 * Z + -67.350220 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.589185 -0.619601 -0.941313 [DEG: 148.3494 -35.5005 -53.9332 ] ZXZ: -0.152278 1.070952 2.418562 [DEG: -8.7249 61.3610 138.5734 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0579TS328_1-D1 REMARK 2: T0579-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0579TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 59 60 4.0 11 2.78 17.009 21.68 REMARK ---------------------------------------------------------- MOLECULE T0579TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0579 REMARK MODEL 1 REMARK PARENT 2gsy_E ATOM 1 N MET 1 -8.746 22.470 -25.849 1.00 3.00 N ATOM 2 CA MET 1 -8.482 22.666 -24.428 1.00 3.00 C ATOM 3 C MET 1 -7.054 22.245 -24.102 1.00 3.00 C ATOM 4 O MET 1 -6.388 21.602 -24.919 1.00 3.00 O ATOM 5 N LYS 2 -6.589 22.607 -22.912 1.00 3.00 N ATOM 6 CA LYS 2 -5.275 22.185 -22.462 1.00 3.00 C ATOM 7 C LYS 2 -5.303 21.789 -20.992 1.00 3.00 C ATOM 8 O LYS 2 -6.145 22.276 -20.230 1.00 3.00 O ATOM 9 N VAL 3 -4.391 20.894 -20.613 1.00 3.00 N ATOM 10 CA VAL 3 -4.260 20.445 -19.233 1.00 3.00 C ATOM 11 C VAL 3 -2.859 20.779 -18.746 1.00 3.00 C ATOM 12 O VAL 3 -1.874 20.402 -19.373 1.00 3.00 O ATOM 13 N GLY 4 -2.782 21.505 -17.636 1.00 3.00 N ATOM 14 CA GLY 4 -1.507 21.881 -17.041 1.00 3.00 C ATOM 15 C GLY 4 -1.455 21.465 -15.587 1.00 3.00 C ATOM 16 O GLY 4 -2.457 21.034 -15.021 1.00 3.00 O ATOM 17 N SER 5 -0.285 21.591 -14.976 1.00 3.00 N ATOM 18 CA SER 5 -0.127 21.233 -13.574 1.00 3.00 C ATOM 19 C SER 5 0.821 20.075 -13.393 1.00 3.00 C ATOM 20 O SER 5 1.484 19.652 -14.340 1.00 3.00 O ATOM 21 N GLN 6 0.868 19.548 -12.174 1.00 3.00 N ATOM 22 CA GLN 6 1.878 18.577 -11.811 1.00 3.00 C ATOM 23 C GLN 6 1.452 17.735 -10.630 1.00 3.00 C ATOM 24 O GLN 6 0.892 18.249 -9.662 1.00 3.00 O ATOM 25 N VAL 7 1.722 16.440 -10.713 1.00 3.00 N ATOM 26 CA VAL 7 1.624 15.577 -9.552 1.00 3.00 C ATOM 27 C VAL 7 3.026 15.264 -9.074 1.00 3.00 C ATOM 28 O VAL 7 3.953 15.159 -9.877 1.00 3.00 O ATOM 29 N ILE 8 3.173 15.145 -7.761 1.00 3.00 N ATOM 30 CA ILE 8 4.450 14.836 -7.142 1.00 3.00 C ATOM 31 C ILE 8 4.289 13.534 -6.368 1.00 3.00 C ATOM 32 O ILE 8 3.376 13.397 -5.552 1.00 3.00 O ATOM 33 N ILE 9 5.179 12.582 -6.634 1.00 3.00 N ATOM 34 CA ILE 9 5.119 11.269 -6.006 1.00 3.00 C ATOM 35 C ILE 9 6.302 11.018 -5.082 1.00 3.00 C ATOM 36 O ILE 9 7.442 11.329 -5.426 1.00 3.00 O ATOM 37 N ASN 10 6.016 10.459 -3.909 1.00 3.00 N ATOM 38 CA ASN 10 7.044 10.068 -2.947 1.00 3.00 C ATOM 39 C ASN 10 6.906 8.573 -2.689 1.00 3.00 C ATOM 40 O ASN 10 5.802 8.033 -2.765 1.00 3.00 O ATOM 41 N THR 11 8.016 7.908 -2.370 1.00 3.00 N ATOM 42 CA THR 11 7.987 6.476 -2.048 1.00 3.00 C ATOM 43 C THR 11 9.213 6.003 -1.256 1.00 3.00 C ATOM 44 O THR 11 10.275 6.609 -1.335 1.00 3.00 O ATOM 45 N SER 12 9.076 4.932 -0.483 1.00 3.00 N ATOM 46 CA SER 12 10.235 4.352 0.205 1.00 3.00 C ATOM 47 C SER 12 10.669 3.061 -0.479 1.00 3.00 C ATOM 48 O SER 12 11.693 2.473 -0.133 1.00 3.00 O ATOM 49 N HIS 13 9.875 2.642 -1.458 1.00 3.00 N ATOM 50 CA HIS 13 10.064 1.372 -2.137 1.00 3.00 C ATOM 51 C HIS 13 10.806 1.599 -3.449 1.00 3.00 C ATOM 52 O HIS 13 10.385 2.399 -4.282 1.00 3.00 O ATOM 53 N MET 14 11.917 0.892 -3.615 1.00 3.00 N ATOM 54 CA MET 14 12.737 1.015 -4.808 1.00 3.00 C ATOM 55 C MET 14 12.225 0.139 -5.946 1.00 3.00 C ATOM 56 O MET 14 11.715 -0.956 -5.721 1.00 3.00 O ATOM 57 N LYS 15 12.367 0.639 -7.167 1.00 3.00 N ATOM 58 CA LYS 15 12.000 -0.108 -8.363 1.00 3.00 C ATOM 59 C LYS 15 10.545 0.024 -8.768 1.00 3.00 C ATOM 60 O LYS 15 9.984 -0.895 -9.367 1.00 3.00 O ATOM 61 N GLY 16 9.927 1.159 -8.451 1.00 3.00 N ATOM 62 CA GLY 16 8.555 1.381 -8.892 1.00 3.00 C ATOM 63 C GLY 16 8.520 2.202 -10.169 1.00 3.00 C ATOM 64 O GLY 16 9.216 3.210 -10.294 1.00 3.00 O ATOM 65 N MET 17 7.706 1.755 -11.117 1.00 3.00 N ATOM 66 CA MET 17 7.560 2.431 -12.397 1.00 3.00 C ATOM 67 C MET 17 6.102 2.864 -12.561 1.00 3.00 C ATOM 68 O MET 17 5.186 2.060 -12.372 1.00 3.00 O ATOM 69 N LYS 18 5.895 4.136 -12.895 1.00 3.00 N ATOM 70 CA LYS 18 4.545 4.679 -13.028 1.00 3.00 C ATOM 71 C LYS 18 4.136 4.953 -14.461 1.00 3.00 C ATOM 72 O LYS 18 4.913 5.491 -15.251 1.00 3.00 O ATOM 73 N GLY 19 2.902 4.578 -14.774 1.00 3.00 N ATOM 74 CA GLY 19 2.257 4.947 -16.020 1.00 3.00 C ATOM 75 C GLY 19 1.037 5.774 -15.674 1.00 3.00 C ATOM 76 O GLY 19 0.386 5.524 -14.664 1.00 3.00 O ATOM 77 N ALA 20 0.737 6.772 -16.496 1.00 3.00 N ATOM 78 CA ALA 20 -0.417 7.622 -16.259 1.00 3.00 C ATOM 79 C ALA 20 -1.023 8.103 -17.568 1.00 3.00 C ATOM 80 O ALA 20 -0.310 8.534 -18.475 1.00 3.00 O ATOM 81 N GLU 21 -2.347 8.020 -17.644 1.00 3.00 N ATOM 82 CA GLU 21 -3.079 8.354 -18.851 1.00 3.00 C ATOM 83 C GLU 21 -4.270 9.235 -18.511 1.00 3.00 C ATOM 84 O GLU 21 -4.959 9.010 -17.519 1.00 3.00 O ATOM 85 N ALA 22 -4.493 10.244 -19.341 1.00 3.00 N ATOM 86 CA ALA 22 -5.682 11.065 -19.234 1.00 3.00 C ATOM 87 C ALA 22 -6.704 10.677 -20.288 1.00 3.00 C ATOM 88 O ALA 22 -6.375 10.531 -21.463 1.00 3.00 O ATOM 89 N THR 23 -7.939 10.483 -19.840 1.00 3.00 N ATOM 90 CA THR 23 -9.032 10.159 -20.730 1.00 3.00 C ATOM 91 C THR 23 -10.031 11.295 -20.693 1.00 3.00 C ATOM 92 O THR 23 -10.408 11.764 -19.618 1.00 3.00 O ATOM 93 N VAL 24 -10.448 11.749 -21.870 1.00 3.00 N ATOM 94 CA VAL 24 -11.562 12.677 -21.963 1.00 3.00 C ATOM 95 C VAL 24 -12.772 11.904 -22.460 1.00 3.00 C ATOM 96 O VAL 24 -12.745 11.321 -23.548 1.00 3.00 O ATOM 97 N THR 25 -13.817 11.881 -21.642 1.00 3.00 N ATOM 98 CA THR 25 -14.969 11.017 -21.875 1.00 3.00 C ATOM 99 C THR 25 -16.140 11.808 -22.445 1.00 3.00 C ATOM 100 O THR 25 -16.419 12.923 -22.006 1.00 3.00 O ATOM 101 N GLY 26 -16.815 11.220 -23.428 1.00 3.00 N ATOM 102 CA GLY 26 -17.965 11.852 -24.059 1.00 3.00 C ATOM 103 C GLY 26 -19.233 11.690 -23.249 1.00 3.00 C ATOM 104 O GLY 26 -19.282 10.900 -22.300 1.00 3.00 O ATOM 105 N ALA 27 -20.262 12.438 -23.638 1.00 3.00 N ATOM 106 CA ALA 27 -21.572 12.376 -23.001 1.00 3.00 C ATOM 107 C ALA 27 -22.110 10.942 -22.929 1.00 3.00 C ATOM 108 O ALA 27 -22.821 10.581 -21.989 1.00 3.00 O ATOM 109 N TYR 28 -21.745 10.121 -23.909 1.00 3.00 N ATOM 110 CA TYR 28 -22.223 8.744 -23.960 1.00 3.00 C ATOM 111 C TYR 28 -21.308 7.752 -23.232 1.00 3.00 C ATOM 112 O TYR 28 -21.418 6.537 -23.422 1.00 3.00 O ATOM 113 N ASP 29 -20.404 8.270 -22.400 1.00 3.00 N ATOM 114 CA ASP 29 -19.534 7.424 -21.576 1.00 3.00 C ATOM 115 C ASP 29 -18.359 6.847 -22.343 1.00 3.00 C ATOM 116 O ASP 29 -17.524 6.128 -21.792 1.00 3.00 O ATOM 373 N THR 94 -23.081 28.796 -21.652 1.00 3.00 N ATOM 374 CA THR 94 -24.485 29.021 -21.286 1.00 3.00 C ATOM 375 C THR 94 -25.224 27.683 -21.395 1.00 3.00 C ATOM 376 O THR 94 -24.990 26.908 -22.334 1.00 3.00 O ATOM 377 N THR 95 -26.097 27.455 -20.447 1.00 3.00 N ATOM 378 CA THR 95 -26.872 26.204 -20.375 1.00 3.00 C ATOM 379 C THR 95 -27.576 25.898 -21.705 1.00 3.00 C ATOM 380 O THR 95 -28.360 26.715 -22.211 1.00 3.00 O ATOM 381 N VAL 96 -27.262 24.708 -22.209 1.00 3.00 N ATOM 382 CA VAL 96 -27.837 24.183 -23.458 1.00 3.00 C ATOM 383 C VAL 96 -29.344 23.971 -23.569 1.00 3.00 C ATOM 384 O VAL 96 -30.068 24.138 -22.593 1.00 3.00 O ATOM 385 N TYR 97 -29.809 23.639 -24.765 1.00 3.00 N ATOM 386 CA TYR 97 -31.198 23.263 -24.948 1.00 3.00 C ATOM 387 C TYR 97 -31.269 21.793 -25.315 1.00 3.00 C ATOM 388 O TYR 97 -30.689 21.362 -26.307 1.00 3.00 O ATOM 389 N MET 98 -31.978 21.030 -24.496 1.00 3.00 N ATOM 390 CA MET 98 -32.145 19.615 -24.733 1.00 3.00 C ATOM 391 C MET 98 -33.512 19.352 -25.321 1.00 3.00 C ATOM 392 O MET 98 -34.521 19.823 -24.797 1.00 3.00 O ATOM 393 N VAL 99 -33.532 18.609 -26.420 1.00 3.00 N ATOM 394 CA VAL 99 -34.770 18.162 -27.023 1.00 3.00 C ATOM 395 C VAL 99 -34.758 16.643 -26.985 1.00 3.00 C ATOM 396 O VAL 99 -33.984 16.003 -27.694 1.00 3.00 O ATOM 397 N ASP 100 -35.607 16.080 -26.132 1.00 3.00 N ATOM 398 CA ASP 100 -35.695 14.641 -25.970 1.00 3.00 C ATOM 399 C ASP 100 -36.966 14.140 -26.620 1.00 3.00 C ATOM 400 O ASP 100 -38.018 14.761 -26.500 1.00 3.00 O ATOM 401 N TYR 101 -36.867 13.017 -27.316 1.00 3.00 N ATOM 402 CA TYR 101 -38.042 12.398 -27.889 1.00 3.00 C ATOM 403 C TYR 101 -38.160 10.965 -27.410 1.00 3.00 C ATOM 404 O TYR 101 -37.165 10.343 -27.027 1.00 3.00 O ATOM 405 N THR 102 -39.392 10.465 -27.433 1.00 3.00 N ATOM 406 CA THR 102 -39.676 9.060 -27.195 1.00 3.00 C ATOM 407 C THR 102 -41.016 8.688 -27.812 1.00 3.00 C ATOM 408 O THR 102 -41.758 9.560 -28.263 1.00 3.00 O ATOM 409 N SER 103 -41.304 7.389 -27.836 1.00 3.00 N ATOM 410 CA SER 103 -42.528 6.839 -28.431 1.00 3.00 C ATOM 411 C SER 103 -42.639 7.165 -29.918 1.00 3.00 C ATOM 412 O SER 103 -43.730 7.170 -30.488 1.00 3.00 O ATOM 413 N THR 104 -41.489 7.417 -30.536 1.00 3.00 N ATOM 414 CA THR 104 -41.401 7.689 -31.961 1.00 3.00 C ATOM 415 C THR 104 -41.290 6.356 -32.698 1.00 3.00 C ATOM 416 O THR 104 -40.468 5.509 -32.342 1.00 3.00 O ATOM 417 N THR 105 -42.132 6.173 -33.711 1.00 3.00 N ATOM 418 CA THR 105 -42.187 4.930 -34.478 1.00 3.00 C ATOM 419 C THR 105 -40.840 4.587 -35.094 1.00 3.00 C ATOM 420 O THR 105 -40.241 5.403 -35.796 1.00 3.00 O ATOM 421 N SER 106 -40.373 3.373 -34.814 1.00 3.00 N ATOM 422 CA SER 106 -39.073 2.901 -35.288 1.00 3.00 C ATOM 423 C SER 106 -39.005 2.976 -36.808 1.00 3.00 C ATOM 424 O SER 106 -39.934 2.560 -37.499 1.00 3.00 O ATOM 425 N GLY 107 -37.911 3.532 -37.317 1.00 3.00 N ATOM 426 CA GLY 107 -37.726 3.660 -38.758 1.00 3.00 C ATOM 427 C GLY 107 -38.292 4.947 -39.331 1.00 3.00 C ATOM 428 O GLY 107 -38.290 5.145 -40.549 1.00 3.00 O ATOM 429 N GLU 108 -38.793 5.814 -38.456 1.00 3.00 N ATOM 430 CA GLU 108 -39.159 7.160 -38.854 1.00 3.00 C ATOM 431 C GLU 108 -39.514 8.462 -39.454 1.00 3.00 C ATOM 432 O GLU 108 -40.204 8.491 -40.492 1.00 3.00 O ATOM 433 N LYS 109 -39.028 9.526 -38.788 1.00 3.00 N ATOM 434 CA LYS 109 -39.283 10.886 -39.216 1.00 3.00 C ATOM 435 C LYS 109 -37.982 11.551 -39.601 1.00 3.00 C ATOM 436 O LYS 109 -36.936 11.036 -39.250 1.00 3.00 O ATOM 437 N VAL 110 -38.069 12.710 -40.312 1.00 3.00 N ATOM 438 CA VAL 110 -36.905 13.507 -40.741 1.00 3.00 C ATOM 439 C VAL 110 -37.176 14.967 -41.086 1.00 3.00 C ATOM 440 O VAL 110 -38.306 15.305 -41.318 1.00 3.00 O ATOM 441 N LYS 111 -36.141 15.788 -41.073 1.00 9.00 N ATOM 442 CA LYS 111 -36.213 17.205 -41.413 1.00 9.00 C ATOM 443 C LYS 111 -36.857 18.075 -40.391 1.00 9.00 C ATOM 444 O LYS 111 -37.415 19.147 -40.676 1.00 9.00 O ATOM 445 N ASN 112 -36.778 17.600 -39.174 1.00 3.00 N ATOM 446 CA ASN 112 -37.398 18.335 -38.083 1.00 3.00 C ATOM 447 C ASN 112 -36.431 19.290 -37.491 1.00 3.00 C ATOM 448 O ASN 112 -36.789 20.285 -36.857 1.00 3.00 O ATOM 449 N HIS 113 -35.198 18.916 -37.703 1.00 3.00 N ATOM 450 CA HIS 113 -34.106 19.664 -37.192 1.00 3.00 C ATOM 451 C HIS 113 -34.078 21.102 -37.745 1.00 3.00 C ATOM 452 O HIS 113 -33.939 22.089 -37.014 1.00 3.00 O ATOM 453 N LYS 114 -34.202 21.224 -39.068 1.00 3.00 N ATOM 454 CA LYS 114 -34.177 22.511 -39.709 1.00 3.00 C ATOM 455 C LYS 114 -33.994 23.763 -38.883 1.00 3.00 C ATOM 456 O LYS 114 -34.770 24.031 -37.968 1.00 3.00 O ATOM 457 N TRP 115 -32.954 24.524 -39.185 1.00 3.00 N ATOM 458 CA TRP 115 -32.683 25.730 -38.431 1.00 3.00 C ATOM 459 C TRP 115 -32.063 26.828 -39.259 1.00 3.00 C ATOM 460 O TRP 115 -31.621 26.598 -40.383 1.00 3.00 O ATOM 461 N VAL 116 -32.058 28.032 -38.704 1.00 3.00 N ATOM 462 CA VAL 116 -31.331 29.140 -39.295 1.00 3.00 C ATOM 463 C VAL 116 -30.515 29.795 -38.191 1.00 3.00 C ATOM 464 O VAL 116 -31.018 30.042 -37.099 1.00 3.00 O ATOM 465 N THR 117 -29.245 30.047 -38.477 1.00 3.00 N ATOM 466 CA THR 117 -28.366 30.738 -37.551 1.00 3.00 C ATOM 467 C THR 117 -27.908 32.012 -38.209 1.00 3.00 C ATOM 468 O THR 117 -27.549 32.010 -39.381 1.00 3.00 O ATOM 469 N GLU 118 -27.927 33.101 -37.453 1.00 3.00 N ATOM 470 CA GLU 118 -27.548 34.408 -37.977 1.00 3.00 C ATOM 471 C GLU 118 -26.310 34.945 -37.286 1.00 3.00 C ATOM 472 O GLU 118 -26.189 34.869 -36.061 1.00 3.00 O ATOM 473 N ASP 119 -25.393 35.494 -38.075 1.00 3.00 N ATOM 474 CA ASP 119 -24.094 35.895 -37.558 1.00 3.00 C ATOM 475 C ASP 119 -23.644 37.267 -38.008 1.00 3.00 C ATOM 476 O ASP 119 -23.972 37.719 -39.106 1.00 3.00 O ATOM 477 N GLU 120 -22.880 37.919 -37.140 1.00 3.00 N ATOM 478 CA GLU 120 -22.001 39.002 -37.544 1.00 3.00 C ATOM 479 C GLU 120 -20.646 38.352 -37.796 1.00 3.00 C ATOM 480 O GLU 120 -20.151 37.597 -36.962 1.00 3.00 O ATOM 481 N LEU 121 -20.057 38.623 -38.953 1.00 3.00 N ATOM 482 CA LEU 121 -18.845 37.925 -39.357 1.00 3.00 C ATOM 483 C LEU 121 -17.784 38.856 -39.902 1.00 3.00 C ATOM 484 O LEU 121 -18.101 39.857 -40.544 1.00 3.00 O ATOM 485 N SER 122 -16.526 38.512 -39.635 1.00 3.00 N ATOM 486 CA SER 122 -15.384 39.162 -40.275 1.00 3.00 C ATOM 487 C SER 122 -14.713 38.129 -41.175 1.00 3.00 C ATOM 488 O SER 122 -14.332 37.055 -40.703 1.00 3.00 O ATOM 489 N ALA 123 -14.597 38.435 -42.479 1.00 3.00 N ATOM 490 CA ALA 123 -14.044 37.484 -43.445 1.00 3.00 C ATOM 491 C ALA 123 -12.572 37.195 -43.200 1.00 3.00 C ATOM 492 O ALA 123 -11.859 38.045 -42.656 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 236 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 84.24 40.4 57 48.3 118 ARMSMC SECONDARY STRUCTURE . . 58.75 50.0 24 36.4 66 ARMSMC SURFACE . . . . . . . . 90.45 41.0 39 48.8 80 ARMSMC BURIED . . . . . . . . 68.87 38.9 18 47.4 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 51 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 44 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 25 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 18 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 21.68 (Number of atoms: 59) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 21.68 59 98.3 60 CRMSCA CRN = ALL/NP . . . . . 0.3674 CRMSCA SECONDARY STRUCTURE . . 19.31 33 100.0 33 CRMSCA SURFACE . . . . . . . . 21.71 40 97.6 41 CRMSCA BURIED . . . . . . . . 21.60 19 100.0 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 21.77 236 80.0 295 CRMSMC SECONDARY STRUCTURE . . 19.57 132 80.5 164 CRMSMC SURFACE . . . . . . . . 21.89 160 79.2 202 CRMSMC BURIED . . . . . . . . 21.50 76 81.7 93 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 671 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 641 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 396 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 467 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 204 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 21.77 236 25.9 911 CRMSALL SECONDARY STRUCTURE . . 19.57 132 25.0 528 CRMSALL SURFACE . . . . . . . . 21.89 160 25.4 631 CRMSALL BURIED . . . . . . . . 21.50 76 27.1 280 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.439 0.710 0.355 59 98.3 60 ERRCA SECONDARY STRUCTURE . . 15.412 0.691 0.346 33 100.0 33 ERRCA SURFACE . . . . . . . . 17.420 0.705 0.353 40 97.6 41 ERRCA BURIED . . . . . . . . 17.480 0.719 0.360 19 100.0 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.565 0.712 0.356 236 80.0 295 ERRMC SECONDARY STRUCTURE . . 15.654 0.695 0.347 132 80.5 164 ERRMC SURFACE . . . . . . . . 17.657 0.710 0.355 160 79.2 202 ERRMC BURIED . . . . . . . . 17.370 0.718 0.359 76 81.7 93 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 671 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 641 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 396 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 467 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 204 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.565 0.712 0.356 236 25.9 911 ERRALL SECONDARY STRUCTURE . . 15.654 0.695 0.347 132 25.0 528 ERRALL SURFACE . . . . . . . . 17.657 0.710 0.355 160 25.4 631 ERRALL BURIED . . . . . . . . 17.370 0.718 0.359 76 27.1 280 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 5 59 60 DISTCA CA (P) 0.00 0.00 0.00 0.00 8.33 60 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.07 DISTCA ALL (N) 0 0 0 0 17 236 911 DISTALL ALL (P) 0.00 0.00 0.00 0.00 1.87 911 DISTALL ALL (RMS) 0.00 0.00 0.00 0.00 8.16 DISTALL END of the results output