####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 33 ( 252), selected 33 , name T0579TS301_1-D2 # Molecule2: number of CA atoms 64 ( 966), selected 33 , name T0579-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0579TS301_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 34 - 74 3.83 3.83 LCS_AVERAGE: 51.56 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 62 - 74 1.62 5.43 LCS_AVERAGE: 16.57 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 63 - 74 0.98 5.97 LCS_AVERAGE: 13.97 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 33 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 34 V 34 6 11 33 3 5 9 11 11 13 17 22 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT V 35 V 35 6 11 33 3 5 9 11 11 13 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT T 38 T 38 9 11 33 5 9 9 11 12 13 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT P 39 P 39 9 11 33 5 9 9 11 12 13 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT T 40 T 40 9 11 33 5 9 9 11 12 13 18 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT N 41 N 41 9 11 33 5 9 9 11 12 13 18 21 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT G 42 G 42 9 11 33 5 9 9 11 12 13 16 21 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT G 43 G 43 9 11 33 4 9 9 11 12 17 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT Q 44 Q 44 9 11 33 4 9 9 11 12 13 15 22 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT R 45 R 45 9 11 33 4 9 9 11 12 13 14 20 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT V 46 V 46 9 11 33 4 9 9 11 12 12 13 22 27 29 32 32 33 33 33 33 33 33 33 33 LCS_GDT W 51 W 51 7 7 33 4 7 11 14 17 18 19 22 26 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT V 52 V 52 7 7 33 3 9 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT I 53 I 53 7 7 33 4 7 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT Q 54 Q 54 7 7 33 4 7 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT E 55 E 55 7 7 33 4 7 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT E 56 E 56 7 7 33 4 7 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT I 57 I 57 7 7 33 4 7 11 12 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT A 60 A 60 3 4 33 3 3 3 3 4 5 6 8 12 15 20 27 33 33 33 33 33 33 33 33 LCS_GDT G 61 G 61 3 7 33 3 3 4 4 8 14 18 22 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT D 62 D 62 3 13 33 3 3 4 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT K 63 K 63 12 13 33 3 6 11 12 15 17 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT T 64 T 64 12 13 33 3 9 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT L 65 L 65 12 13 33 4 9 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT Q 66 Q 66 12 13 33 7 9 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT P 67 P 67 12 13 33 7 9 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT G 68 G 68 12 13 33 7 9 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT D 69 D 69 12 13 33 7 9 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT Q 70 Q 70 12 13 33 3 9 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT V 71 V 71 12 13 33 7 9 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT I 72 I 72 12 13 33 7 9 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT L 73 L 73 12 13 33 7 9 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_GDT E 74 E 74 12 13 33 2 3 11 12 15 17 19 24 27 30 32 32 33 33 33 33 33 33 33 33 LCS_AVERAGE LCS_A: 27.37 ( 13.97 16.57 51.56 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 9 11 14 17 18 19 24 27 30 32 32 33 33 33 33 33 33 33 33 GDT PERCENT_AT 10.94 14.06 17.19 21.88 26.56 28.12 29.69 37.50 42.19 46.88 50.00 50.00 51.56 51.56 51.56 51.56 51.56 51.56 51.56 51.56 GDT RMS_LOCAL 0.34 0.48 0.69 1.22 1.52 1.64 1.88 2.97 3.25 3.47 3.67 3.67 3.83 3.83 3.83 3.83 3.83 3.83 3.83 3.83 GDT RMS_ALL_AT 5.16 5.39 5.60 5.33 5.38 5.45 5.17 4.02 3.94 3.87 3.83 3.83 3.83 3.83 3.83 3.83 3.83 3.83 3.83 3.83 # Checking swapping # possible swapping detected: E 55 E 55 # possible swapping detected: E 74 E 74 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 34 V 34 5.539 0 0.204 1.110 9.516 25.000 20.000 LGA V 35 V 35 4.516 0 0.200 1.138 5.107 30.119 35.170 LGA T 38 T 38 4.405 0 0.034 0.078 5.852 35.714 30.952 LGA P 39 P 39 3.979 0 0.177 0.329 5.012 37.500 41.905 LGA T 40 T 40 4.963 0 0.083 0.154 5.765 29.048 28.571 LGA N 41 N 41 5.289 0 0.028 0.924 5.919 27.500 26.905 LGA G 42 G 42 5.700 0 0.184 0.184 5.742 25.119 25.119 LGA G 43 G 43 3.059 0 0.042 0.042 4.439 43.452 43.452 LGA Q 44 Q 44 5.427 0 0.027 1.331 8.307 30.238 20.159 LGA R 45 R 45 6.034 0 0.145 1.130 11.259 15.357 11.905 LGA V 46 V 46 6.524 0 0.100 0.181 7.218 15.476 16.395 LGA W 51 W 51 4.247 0 0.053 0.089 7.619 39.167 23.367 LGA V 52 V 52 1.709 0 0.043 1.106 3.367 75.119 68.639 LGA I 53 I 53 1.427 0 0.139 1.011 3.313 85.952 75.655 LGA Q 54 Q 54 2.217 0 0.091 1.272 6.122 64.881 48.042 LGA E 55 E 55 2.626 0 0.102 0.943 3.642 60.952 56.508 LGA E 56 E 56 1.961 0 0.086 0.733 3.815 65.357 61.058 LGA I 57 I 57 3.448 0 0.019 0.168 4.296 48.452 45.952 LGA A 60 A 60 7.927 0 0.443 0.440 8.286 11.190 9.905 LGA G 61 G 61 6.293 0 0.205 0.205 6.478 24.286 24.286 LGA D 62 D 62 3.247 0 0.539 0.879 8.502 57.738 35.298 LGA K 63 K 63 3.769 0 0.594 1.024 11.247 54.048 27.619 LGA T 64 T 64 2.537 0 0.262 1.120 3.868 51.905 54.218 LGA L 65 L 65 1.630 0 0.201 0.199 1.815 75.000 73.929 LGA Q 66 Q 66 2.484 0 0.034 1.000 3.560 60.952 57.354 LGA P 67 P 67 2.836 0 0.092 0.113 3.024 57.143 56.122 LGA G 68 G 68 2.837 0 0.050 0.050 2.870 59.048 59.048 LGA D 69 D 69 2.270 0 0.025 0.774 2.753 60.952 64.881 LGA Q 70 Q 70 2.518 0 0.094 0.971 2.741 69.048 67.619 LGA V 71 V 71 1.816 0 0.056 0.089 2.871 64.881 64.898 LGA I 72 I 72 2.015 0 0.105 0.542 3.098 68.810 66.964 LGA L 73 L 73 2.580 0 0.206 0.956 3.657 60.952 59.226 LGA E 74 E 74 2.941 0 0.695 1.160 4.263 60.952 50.476 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 33 132 132 100.00 252 252 100.00 64 SUMMARY(RMSD_GDC): 3.827 3.726 4.305 24.864 22.681 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 33 64 4.0 24 2.97 31.250 29.362 0.781 LGA_LOCAL RMSD: 2.975 Number of atoms: 24 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 4.017 Number of assigned atoms: 33 Std_ASGN_ATOMS RMSD: 3.827 Standard rmsd on all 33 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.050758 * X + -0.994020 * Y + 0.096680 * Z + -1.756048 Y_new = 0.938924 * X + 0.014504 * Y + -0.343819 * Z + -11.333660 Z_new = 0.340361 * X + 0.108226 * Y + 0.934046 * Z + 2.448445 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.516789 -0.347301 0.115354 [DEG: 86.9056 -19.8989 6.6093 ] ZXZ: 0.274114 0.365219 1.262931 [DEG: 15.7056 20.9255 72.3606 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0579TS301_1-D2 REMARK 2: T0579-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0579TS301_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 33 64 4.0 24 2.97 29.362 3.83 REMARK ---------------------------------------------------------- MOLECULE T0579TS301_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0579 REMARK MODEL 1 REMARK PARENT N/A ATOM 74 N VAL 34 -3.588 1.698 6.735 1.00 0.00 N ATOM 75 CA VAL 34 -2.865 0.618 6.000 1.00 0.00 C ATOM 76 CB VAL 34 -2.305 1.125 4.658 1.00 0.00 C ATOM 77 CG1 VAL 34 -3.434 1.599 3.754 1.00 0.00 C ATOM 78 CG2 VAL 34 -1.299 2.242 4.890 1.00 0.00 C ATOM 79 O VAL 34 -1.396 0.761 7.885 1.00 0.00 O ATOM 80 C VAL 34 -1.742 0.077 6.902 1.00 0.00 C ATOM 81 N VAL 35 -1.201 -1.052 6.447 1.00 0.00 N ATOM 82 CA VAL 35 -0.083 -1.650 7.221 1.00 0.00 C ATOM 83 CB VAL 35 -0.529 -2.042 8.642 1.00 0.00 C ATOM 84 CG1 VAL 35 -1.598 -3.122 8.586 1.00 0.00 C ATOM 85 CG2 VAL 35 0.664 -2.508 9.465 1.00 0.00 C ATOM 86 O VAL 35 0.139 -2.923 5.235 1.00 0.00 O ATOM 87 C VAL 35 0.422 -2.855 6.425 1.00 0.00 C ATOM 91 N THR 38 2.932 -10.180 7.760 1.00 0.00 N ATOM 92 CA THR 38 4.073 -11.101 7.601 1.00 0.00 C ATOM 93 CB THR 38 5.021 -11.040 8.813 1.00 0.00 C ATOM 94 CG2 THR 38 6.206 -11.972 8.608 1.00 0.00 C ATOM 95 OG1 THR 38 5.510 -9.704 8.975 1.00 0.00 O ATOM 96 O THR 38 2.812 -13.040 8.352 1.00 0.00 O ATOM 97 C THR 38 3.399 -12.486 7.414 1.00 0.00 C ATOM 98 N PRO 39 3.458 -13.009 6.199 1.00 0.00 N ATOM 99 CA PRO 39 2.836 -14.290 5.865 1.00 0.00 C ATOM 100 CB PRO 39 2.993 -14.394 4.348 1.00 0.00 C ATOM 101 CG PRO 39 3.887 -13.254 3.985 1.00 0.00 C ATOM 102 CD PRO 39 4.116 -12.486 5.255 1.00 0.00 C ATOM 103 O PRO 39 4.730 -15.312 6.734 1.00 0.00 O ATOM 104 C PRO 39 3.527 -15.419 6.571 1.00 0.00 C ATOM 105 N THR 40 2.845 -16.435 6.948 1.00 0.00 N ATOM 106 CA THR 40 3.442 -17.583 7.636 1.00 0.00 C ATOM 107 CB THR 40 2.363 -18.512 8.220 1.00 0.00 C ATOM 108 CG2 THR 40 1.498 -17.762 9.221 1.00 0.00 C ATOM 109 OG1 THR 40 1.524 -18.998 7.164 1.00 0.00 O ATOM 110 O THR 40 5.064 -19.224 7.297 1.00 0.00 O ATOM 111 C THR 40 4.340 -18.383 6.710 1.00 0.00 C ATOM 112 N ASN 41 4.354 -18.187 5.427 1.00 0.00 N ATOM 113 CA ASN 41 5.248 -18.985 4.551 1.00 0.00 C ATOM 114 CB ASN 41 4.600 -19.203 3.181 1.00 0.00 C ATOM 115 CG ASN 41 4.425 -17.912 2.406 1.00 0.00 C ATOM 116 ND2 ASN 41 3.803 -18.005 1.236 1.00 0.00 N ATOM 117 OD1 ASN 41 4.844 -16.845 2.856 1.00 0.00 O ATOM 118 O ASN 41 7.402 -18.847 3.515 1.00 0.00 O ATOM 119 C ASN 41 6.623 -18.365 4.362 1.00 0.00 C ATOM 120 N GLY 42 6.981 -17.316 5.060 1.00 0.00 N ATOM 121 CA GLY 42 8.265 -16.624 4.972 1.00 0.00 C ATOM 122 O GLY 42 9.473 -15.190 3.492 1.00 0.00 O ATOM 123 C GLY 42 8.393 -15.748 3.760 1.00 0.00 C ATOM 124 N GLY 43 7.351 -15.570 2.971 1.00 0.00 N ATOM 125 CA GLY 43 7.362 -14.729 1.757 1.00 0.00 C ATOM 126 O GLY 43 6.927 -12.957 3.331 1.00 0.00 O ATOM 127 C GLY 43 7.259 -13.257 2.177 1.00 0.00 C ATOM 128 N GLN 44 7.544 -12.359 1.261 1.00 0.00 N ATOM 129 CA GLN 44 7.524 -10.904 1.383 1.00 0.00 C ATOM 130 CB GLN 44 7.611 -10.252 0.001 1.00 0.00 C ATOM 131 CG GLN 44 7.566 -8.732 0.029 1.00 0.00 C ATOM 132 CD GLN 44 8.808 -8.123 0.648 1.00 0.00 C ATOM 133 OE1 GLN 44 9.930 -8.425 0.239 1.00 0.00 O ATOM 134 NE2 GLN 44 8.613 -7.262 1.641 1.00 0.00 N ATOM 135 O GLN 44 5.187 -10.913 1.903 1.00 0.00 O ATOM 136 C GLN 44 6.273 -10.383 2.111 1.00 0.00 C ATOM 137 N ARG 45 6.459 -9.344 2.911 1.00 0.00 N ATOM 138 CA ARG 45 5.371 -8.706 3.684 1.00 0.00 C ATOM 139 CB ARG 45 5.916 -7.536 4.508 1.00 0.00 C ATOM 140 CG ARG 45 6.808 -7.955 5.665 1.00 0.00 C ATOM 141 CD ARG 45 7.311 -6.748 6.440 1.00 0.00 C ATOM 142 NE ARG 45 8.178 -7.132 7.551 1.00 0.00 N ATOM 143 CZ ARG 45 8.733 -6.271 8.398 1.00 0.00 C ATOM 144 NH1 ARG 45 9.509 -6.714 9.380 1.00 0.00 H ATOM 145 NH2 ARG 45 8.511 -4.970 8.263 1.00 0.00 H ATOM 146 O ARG 45 4.644 -7.802 1.577 1.00 0.00 O ATOM 147 C ARG 45 4.301 -8.256 2.673 1.00 0.00 C ATOM 148 N VAL 46 3.060 -8.402 3.112 1.00 0.00 N ATOM 149 CA VAL 46 1.914 -8.061 2.278 1.00 0.00 C ATOM 150 CB VAL 46 0.900 -9.218 2.212 1.00 0.00 C ATOM 151 CG1 VAL 46 -0.391 -8.758 1.550 1.00 0.00 C ATOM 152 CG2 VAL 46 1.491 -10.403 1.466 1.00 0.00 C ATOM 153 O VAL 46 0.849 -6.785 3.950 1.00 0.00 O ATOM 154 C VAL 46 1.222 -6.806 2.773 1.00 0.00 C ATOM 158 N TRP 51 1.024 -5.887 1.881 1.00 0.00 N ATOM 159 CA TRP 51 0.315 -4.620 2.169 1.00 0.00 C ATOM 160 CB TRP 51 0.389 -3.678 0.967 1.00 0.00 C ATOM 161 CG TRP 51 1.769 -3.158 0.695 1.00 0.00 C ATOM 162 CD1 TRP 51 2.585 -3.505 -0.342 1.00 0.00 C ATOM 163 CD2 TRP 51 2.492 -2.199 1.474 1.00 0.00 C ATOM 164 CE2 TRP 51 3.739 -2.012 0.851 1.00 0.00 C ATOM 165 CE3 TRP 51 2.208 -1.480 2.639 1.00 0.00 C ATOM 166 NE1 TRP 51 3.776 -2.820 -0.258 1.00 0.00 N ATOM 167 CZ2 TRP 51 4.702 -1.136 1.352 1.00 0.00 C ATOM 168 CZ3 TRP 51 3.164 -0.612 3.131 1.00 0.00 C ATOM 169 CH2 TRP 51 4.397 -0.446 2.490 1.00 0.00 H ATOM 170 O TRP 51 -1.743 -5.692 1.797 1.00 0.00 O ATOM 171 C TRP 51 -1.133 -4.898 2.539 1.00 0.00 C ATOM 172 N VAL 52 -1.698 -4.279 3.570 1.00 0.00 N ATOM 173 CA VAL 52 -3.118 -4.501 3.854 1.00 0.00 C ATOM 174 CB VAL 52 -3.313 -5.294 5.159 1.00 0.00 C ATOM 175 CG1 VAL 52 -2.537 -4.651 6.297 1.00 0.00 C ATOM 176 CG2 VAL 52 -4.791 -5.392 5.506 1.00 0.00 C ATOM 177 O VAL 52 -3.144 -2.156 4.551 1.00 0.00 O ATOM 178 C VAL 52 -3.704 -3.056 3.896 1.00 0.00 C ATOM 179 N ILE 53 -4.822 -2.850 3.230 1.00 0.00 N ATOM 180 CA ILE 53 -5.541 -1.574 3.203 1.00 0.00 C ATOM 181 CB ILE 53 -5.980 -1.204 1.774 1.00 0.00 C ATOM 182 CG1 ILE 53 -4.757 -1.029 0.870 1.00 0.00 C ATOM 183 CG2 ILE 53 -6.856 0.039 1.789 1.00 0.00 C ATOM 184 CD1 ILE 53 -5.098 -0.912 -0.602 1.00 0.00 C ATOM 185 O ILE 53 -7.241 -2.843 4.191 1.00 0.00 O ATOM 186 C ILE 53 -6.735 -1.710 4.152 1.00 0.00 C ATOM 187 N GLN 54 -7.195 -0.695 4.877 1.00 0.00 N ATOM 188 CA GLN 54 -8.325 -0.909 5.789 1.00 0.00 C ATOM 189 CB GLN 54 -8.716 0.403 6.474 1.00 0.00 C ATOM 190 CG GLN 54 -7.699 0.899 7.489 1.00 0.00 C ATOM 191 CD GLN 54 -8.060 2.255 8.061 1.00 0.00 C ATOM 192 OE1 GLN 54 -8.711 3.064 7.402 1.00 0.00 O ATOM 193 NE2 GLN 54 -7.640 2.506 9.296 1.00 0.00 N ATOM 194 O GLN 54 -10.305 -2.272 5.632 1.00 0.00 O ATOM 195 C GLN 54 -9.531 -1.493 5.044 1.00 0.00 C ATOM 196 N GLU 55 -9.726 -1.074 3.789 1.00 0.00 N ATOM 197 CA GLU 55 -10.882 -1.518 2.995 1.00 0.00 C ATOM 198 CB GLU 55 -10.944 -0.760 1.668 1.00 0.00 C ATOM 199 CG GLU 55 -11.276 0.717 1.812 1.00 0.00 C ATOM 200 CD GLU 55 -11.300 1.442 0.481 1.00 0.00 C ATOM 201 OE1 GLU 55 -10.994 0.804 -0.548 1.00 0.00 O ATOM 202 OE2 GLU 55 -11.626 2.647 0.468 1.00 0.00 O ATOM 203 O GLU 55 -11.968 -3.443 2.341 1.00 0.00 O ATOM 204 C GLU 55 -10.850 -3.011 2.726 1.00 0.00 C ATOM 205 N GLU 56 -9.797 -3.767 2.905 1.00 0.00 N ATOM 206 CA GLU 56 -9.697 -5.190 2.714 1.00 0.00 C ATOM 207 CB GLU 56 -8.261 -5.583 2.359 1.00 0.00 C ATOM 208 CG GLU 56 -7.759 -4.987 1.053 1.00 0.00 C ATOM 209 CD GLU 56 -8.526 -5.492 -0.151 1.00 0.00 C ATOM 210 OE1 GLU 56 -9.182 -6.549 -0.038 1.00 0.00 O ATOM 211 OE2 GLU 56 -8.474 -4.832 -1.210 1.00 0.00 O ATOM 212 O GLU 56 -10.274 -7.173 3.802 1.00 0.00 O ATOM 213 C GLU 56 -10.152 -5.952 3.950 1.00 0.00 C ATOM 214 N ILE 57 -10.376 -5.360 5.108 1.00 0.00 N ATOM 215 CA ILE 57 -10.774 -5.995 6.337 1.00 0.00 C ATOM 216 CB ILE 57 -10.285 -5.204 7.565 1.00 0.00 C ATOM 217 CG1 ILE 57 -8.766 -5.022 7.513 1.00 0.00 C ATOM 218 CG2 ILE 57 -10.731 -5.886 8.849 1.00 0.00 C ATOM 219 CD1 ILE 57 -8.284 -3.734 8.143 1.00 0.00 C ATOM 220 O ILE 57 -13.089 -5.286 6.139 1.00 0.00 O ATOM 221 C ILE 57 -12.298 -6.192 6.448 1.00 0.00 C ATOM 225 N ALA 60 -17.577 -5.385 10.006 1.00 0.00 N ATOM 226 CA ALA 60 -18.404 -5.619 11.197 1.00 0.00 C ATOM 227 CB ALA 60 -18.135 -7.004 11.766 1.00 0.00 C ATOM 228 O ALA 60 -18.203 -4.852 13.500 1.00 0.00 O ATOM 229 C ALA 60 -18.166 -4.564 12.280 1.00 0.00 C ATOM 230 N GLY 61 -17.926 -3.322 11.856 1.00 0.00 N ATOM 231 CA GLY 61 -17.646 -2.236 12.804 1.00 0.00 C ATOM 232 O GLY 61 -16.232 -2.658 14.782 1.00 0.00 O ATOM 233 C GLY 61 -16.321 -2.550 13.537 1.00 0.00 C ATOM 234 N ASP 62 -15.288 -2.708 12.722 1.00 0.00 N ATOM 235 CA ASP 62 -13.919 -2.982 13.178 1.00 0.00 C ATOM 236 CB ASP 62 -13.673 -4.490 13.255 1.00 0.00 C ATOM 237 CG ASP 62 -12.304 -4.827 13.811 1.00 0.00 C ATOM 238 OD1 ASP 62 -11.636 -3.915 14.339 1.00 0.00 O ATOM 239 OD2 ASP 62 -11.900 -6.005 13.718 1.00 0.00 O ATOM 240 O ASP 62 -12.615 -1.117 12.436 1.00 0.00 O ATOM 241 C ASP 62 -12.986 -2.283 12.183 1.00 0.00 C ATOM 242 N LYS 63 -12.628 -2.915 11.105 1.00 0.00 N ATOM 243 CA LYS 63 -11.750 -2.271 10.105 1.00 0.00 C ATOM 244 CB LYS 63 -12.508 -1.174 9.352 1.00 0.00 C ATOM 245 CG LYS 63 -13.887 -1.592 8.872 1.00 0.00 C ATOM 246 CD LYS 63 -14.921 -1.462 9.978 1.00 0.00 C ATOM 247 CE LYS 63 -14.824 -0.110 10.666 1.00 0.00 C ATOM 248 NZ LYS 63 -15.454 0.971 9.857 1.00 0.00 N ATOM 249 O LYS 63 -9.922 -0.635 10.131 1.00 0.00 O ATOM 250 C LYS 63 -10.461 -1.647 10.645 1.00 0.00 C ATOM 251 N THR 64 -9.875 -2.215 11.681 1.00 0.00 N ATOM 252 CA THR 64 -8.613 -1.771 12.316 1.00 0.00 C ATOM 253 CB THR 64 -8.880 -0.942 13.586 1.00 0.00 C ATOM 254 CG2 THR 64 -9.827 0.208 13.281 1.00 0.00 C ATOM 255 OG1 THR 64 -9.477 -1.775 14.587 1.00 0.00 O ATOM 256 O THR 64 -8.358 -4.085 12.502 1.00 0.00 O ATOM 257 C THR 64 -7.785 -3.015 12.634 1.00 0.00 C ATOM 258 N LEU 65 -6.535 -3.073 12.985 1.00 0.00 N ATOM 259 CA LEU 65 -5.797 -4.285 13.254 1.00 0.00 C ATOM 260 CB LEU 65 -5.264 -4.887 11.953 1.00 0.00 C ATOM 261 CG LEU 65 -6.311 -5.387 10.957 1.00 0.00 C ATOM 262 CD1 LEU 65 -5.665 -5.733 9.624 1.00 0.00 C ATOM 263 CD2 LEU 65 -7.052 -6.592 11.515 1.00 0.00 C ATOM 264 O LEU 65 -4.260 -2.735 14.097 1.00 0.00 O ATOM 265 C LEU 65 -4.692 -3.877 14.225 1.00 0.00 C ATOM 266 N GLN 66 -4.361 -4.836 15.030 1.00 0.00 N ATOM 267 CA GLN 66 -3.302 -4.614 16.004 1.00 0.00 C ATOM 268 CB GLN 66 -3.781 -4.980 17.410 1.00 0.00 C ATOM 269 CG GLN 66 -5.005 -4.206 17.869 1.00 0.00 C ATOM 270 CD GLN 66 -4.727 -2.726 18.044 1.00 0.00 C ATOM 271 OE1 GLN 66 -3.805 -2.338 18.760 1.00 0.00 O ATOM 272 NE2 GLN 66 -5.528 -1.894 17.386 1.00 0.00 N ATOM 273 O GLN 66 -2.174 -6.568 15.152 1.00 0.00 O ATOM 274 C GLN 66 -2.061 -5.426 15.631 1.00 0.00 C ATOM 275 N PRO 67 -0.957 -4.773 15.963 1.00 0.00 N ATOM 276 CA PRO 67 0.333 -5.401 15.744 1.00 0.00 C ATOM 277 CB PRO 67 1.337 -4.388 16.299 1.00 0.00 C ATOM 278 CG PRO 67 0.634 -3.075 16.199 1.00 0.00 C ATOM 279 CD PRO 67 -0.811 -3.350 16.510 1.00 0.00 C ATOM 280 O PRO 67 0.083 -6.816 17.728 1.00 0.00 O ATOM 281 C PRO 67 0.368 -6.738 16.503 1.00 0.00 C ATOM 282 N GLY 68 0.727 -7.805 15.801 1.00 0.00 N ATOM 283 CA GLY 68 0.802 -9.100 16.438 1.00 0.00 C ATOM 284 O GLY 68 -0.280 -11.162 16.717 1.00 0.00 O ATOM 285 C GLY 68 -0.407 -9.991 16.304 1.00 0.00 C ATOM 286 N ASP 69 -1.485 -9.490 15.763 1.00 0.00 N ATOM 287 CA ASP 69 -2.738 -10.222 15.532 1.00 0.00 C ATOM 288 CB ASP 69 -3.859 -9.256 15.144 1.00 0.00 C ATOM 289 CG ASP 69 -4.310 -8.391 16.306 1.00 0.00 C ATOM 290 OD1 ASP 69 -3.931 -8.698 17.456 1.00 0.00 O ATOM 291 OD2 ASP 69 -5.040 -7.409 16.064 1.00 0.00 O ATOM 292 O ASP 69 -1.982 -10.991 13.428 1.00 0.00 O ATOM 293 C ASP 69 -2.605 -11.299 14.446 1.00 0.00 C ATOM 294 N GLN 70 -3.163 -12.464 14.657 1.00 0.00 N ATOM 295 CA GLN 70 -3.098 -13.549 13.643 1.00 0.00 C ATOM 296 CB GLN 70 -3.265 -14.917 14.309 1.00 0.00 C ATOM 297 CG GLN 70 -2.177 -15.254 15.314 1.00 0.00 C ATOM 298 CD GLN 70 -0.813 -15.395 14.670 1.00 0.00 C ATOM 299 OE1 GLN 70 -0.613 -16.236 13.794 1.00 0.00 O ATOM 300 NE2 GLN 70 0.133 -14.570 15.104 1.00 0.00 N ATOM 301 O GLN 70 -5.295 -12.809 13.098 1.00 0.00 O ATOM 302 C GLN 70 -4.203 -13.209 12.666 1.00 0.00 C ATOM 303 N VAL 71 -4.038 -13.270 11.378 1.00 0.00 N ATOM 304 CA VAL 71 -5.050 -12.943 10.386 1.00 0.00 C ATOM 305 CB VAL 71 -4.862 -11.517 9.836 1.00 0.00 C ATOM 306 CG1 VAL 71 -5.230 -10.487 10.893 1.00 0.00 C ATOM 307 CG2 VAL 71 -3.432 -11.314 9.362 1.00 0.00 C ATOM 308 O VAL 71 -3.976 -14.744 9.176 1.00 0.00 O ATOM 309 C VAL 71 -4.962 -13.991 9.281 1.00 0.00 C ATOM 310 N ILE 72 -5.997 -14.003 8.485 1.00 0.00 N ATOM 311 CA ILE 72 -6.134 -14.903 7.316 1.00 0.00 C ATOM 312 CB ILE 72 -7.097 -16.067 7.610 1.00 0.00 C ATOM 313 CG1 ILE 72 -6.577 -16.908 8.778 1.00 0.00 C ATOM 314 CG2 ILE 72 -7.315 -16.908 6.361 1.00 0.00 C ATOM 315 CD1 ILE 72 -7.567 -17.935 9.280 1.00 0.00 C ATOM 316 O ILE 72 -7.341 -12.931 6.472 1.00 0.00 O ATOM 317 C ILE 72 -6.605 -13.903 6.266 1.00 0.00 C ATOM 318 N LEU 73 -6.105 -14.161 5.079 1.00 0.00 N ATOM 319 CA LEU 73 -6.313 -13.308 3.909 1.00 0.00 C ATOM 320 CB LEU 73 -5.454 -12.046 4.008 1.00 0.00 C ATOM 321 CG LEU 73 -3.947 -12.262 4.157 1.00 0.00 C ATOM 322 CD1 LEU 73 -3.309 -12.558 2.808 1.00 0.00 C ATOM 323 CD2 LEU 73 -3.291 -11.046 4.796 1.00 0.00 C ATOM 324 O LEU 73 -5.417 -15.083 2.715 1.00 0.00 O ATOM 325 C LEU 73 -6.014 -14.003 2.617 1.00 0.00 C ATOM 326 N GLU 74 -6.344 -13.407 1.517 1.00 0.00 N ATOM 327 CA GLU 74 -6.010 -14.007 0.211 1.00 0.00 C ATOM 328 CB GLU 74 -7.263 -14.129 -0.658 1.00 0.00 C ATOM 329 CG GLU 74 -8.317 -15.072 -0.102 1.00 0.00 C ATOM 330 CD GLU 74 -9.531 -15.186 -1.001 1.00 0.00 C ATOM 331 OE1 GLU 74 -9.663 -14.359 -1.928 1.00 0.00 O ATOM 332 OE2 GLU 74 -10.350 -16.101 -0.781 1.00 0.00 O ATOM 333 O GLU 74 -4.959 -11.878 0.054 1.00 0.00 O ATOM 334 C GLU 74 -4.961 -13.070 -0.341 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 252 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 46.26 70.7 58 46.0 126 ARMSMC SECONDARY STRUCTURE . . 33.37 68.8 16 30.8 52 ARMSMC SURFACE . . . . . . . . 47.79 77.5 40 48.8 82 ARMSMC BURIED . . . . . . . . 42.66 55.6 18 40.9 44 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.95 46.4 28 53.8 52 ARMSSC1 RELIABLE SIDE CHAINS . 79.15 47.8 23 48.9 47 ARMSSC1 SECONDARY STRUCTURE . . 91.34 40.0 10 43.5 23 ARMSSC1 SURFACE . . . . . . . . 82.42 50.0 18 51.4 35 ARMSSC1 BURIED . . . . . . . . 81.10 40.0 10 58.8 17 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.29 35.0 20 52.6 38 ARMSSC2 RELIABLE SIDE CHAINS . 81.24 35.3 17 53.1 32 ARMSSC2 SECONDARY STRUCTURE . . 80.55 40.0 5 33.3 15 ARMSSC2 SURFACE . . . . . . . . 76.49 35.7 14 51.9 27 ARMSSC2 BURIED . . . . . . . . 88.52 33.3 6 54.5 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 102.59 0.0 9 50.0 18 ARMSSC3 RELIABLE SIDE CHAINS . 99.67 0.0 5 35.7 14 ARMSSC3 SECONDARY STRUCTURE . . 35.10 0.0 1 25.0 4 ARMSSC3 SURFACE . . . . . . . . 105.96 0.0 7 46.7 15 ARMSSC3 BURIED . . . . . . . . 89.83 0.0 2 66.7 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 26.35 50.0 2 28.6 7 ARMSSC4 RELIABLE SIDE CHAINS . 26.35 50.0 2 28.6 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 1 ARMSSC4 SURFACE . . . . . . . . 26.35 50.0 2 28.6 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.83 (Number of atoms: 33) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.83 33 51.6 64 CRMSCA CRN = ALL/NP . . . . . 0.1160 CRMSCA SECONDARY STRUCTURE . . 3.52 10 38.5 26 CRMSCA SURFACE . . . . . . . . 4.01 22 52.4 42 CRMSCA BURIED . . . . . . . . 3.44 11 50.0 22 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.82 161 51.3 314 CRMSMC SECONDARY STRUCTURE . . 3.50 50 38.5 130 CRMSMC SURFACE . . . . . . . . 3.99 106 51.7 205 CRMSMC BURIED . . . . . . . . 3.45 55 50.5 109 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.91 120 16.9 710 CRMSSC RELIABLE SIDE CHAINS . 5.00 96 14.2 674 CRMSSC SECONDARY STRUCTURE . . 4.82 42 13.5 312 CRMSSC SURFACE . . . . . . . . 5.38 82 17.7 464 CRMSSC BURIED . . . . . . . . 3.70 38 15.4 246 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.33 252 26.1 966 CRMSALL SECONDARY STRUCTURE . . 4.20 82 19.7 416 CRMSALL SURFACE . . . . . . . . 4.67 170 26.9 632 CRMSALL BURIED . . . . . . . . 3.54 82 24.6 334 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.641 1.000 0.500 33 51.6 64 ERRCA SECONDARY STRUCTURE . . 3.357 1.000 0.500 10 38.5 26 ERRCA SURFACE . . . . . . . . 3.899 1.000 0.500 22 52.4 42 ERRCA BURIED . . . . . . . . 3.126 1.000 0.500 11 50.0 22 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.629 1.000 0.500 161 51.3 314 ERRMC SECONDARY STRUCTURE . . 3.302 1.000 0.500 50 38.5 130 ERRMC SURFACE . . . . . . . . 3.855 1.000 0.500 106 51.7 205 ERRMC BURIED . . . . . . . . 3.191 1.000 0.500 55 50.5 109 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.488 1.000 0.500 120 16.9 710 ERRSC RELIABLE SIDE CHAINS . 4.548 1.000 0.500 96 14.2 674 ERRSC SECONDARY STRUCTURE . . 4.360 1.000 0.500 42 13.5 312 ERRSC SURFACE . . . . . . . . 5.026 1.000 0.500 82 17.7 464 ERRSC BURIED . . . . . . . . 3.329 1.000 0.500 38 15.4 246 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.002 1.000 0.500 252 26.1 966 ERRALL SECONDARY STRUCTURE . . 3.815 1.000 0.500 82 19.7 416 ERRALL SURFACE . . . . . . . . 4.369 1.000 0.500 170 26.9 632 ERRALL BURIED . . . . . . . . 3.242 1.000 0.500 82 24.6 334 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 9 29 33 33 64 DISTCA CA (P) 0.00 3.12 14.06 45.31 51.56 64 DISTCA CA (RMS) 0.00 1.58 2.35 3.45 3.83 DISTCA ALL (N) 1 13 71 201 251 252 966 DISTALL ALL (P) 0.10 1.35 7.35 20.81 25.98 966 DISTALL ALL (RMS) 0.68 1.59 2.37 3.46 4.29 DISTALL END of the results output