####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 22 ( 166), selected 22 , name T0579TS301_1-D1 # Molecule2: number of CA atoms 60 ( 911), selected 22 , name T0579-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0579TS301_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 23 - 108 4.83 9.43 LONGEST_CONTINUOUS_SEGMENT: 13 24 - 109 4.96 9.52 LCS_AVERAGE: 21.06 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 20 - 29 0.86 11.27 LCS_AVERAGE: 15.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 20 - 29 0.86 11.27 LCS_AVERAGE: 13.18 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 22 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 20 A 20 10 10 12 6 8 10 10 10 10 10 10 11 12 13 14 15 15 16 17 17 18 18 18 LCS_GDT E 21 E 21 10 10 12 6 8 10 10 10 10 10 10 11 12 13 14 15 15 16 17 17 18 18 18 LCS_GDT A 22 A 22 10 10 12 3 4 10 10 10 10 10 10 11 12 13 14 15 15 16 17 17 18 18 18 LCS_GDT T 23 T 23 10 10 13 6 8 10 10 10 10 10 10 11 12 13 14 15 15 16 17 17 18 18 18 LCS_GDT V 24 V 24 10 10 13 6 8 10 10 10 10 10 10 11 12 13 14 14 15 16 17 17 18 18 18 LCS_GDT T 25 T 25 10 10 13 5 8 10 10 10 10 10 10 11 12 13 14 14 15 16 17 17 18 18 18 LCS_GDT G 26 G 26 10 10 13 6 8 10 10 10 10 10 10 11 12 13 14 14 15 16 17 17 18 18 18 LCS_GDT A 27 A 27 10 10 13 6 8 10 10 10 10 10 10 11 12 13 14 14 15 16 17 17 18 18 18 LCS_GDT Y 28 Y 28 10 10 13 3 8 10 10 10 10 10 10 11 12 13 14 14 15 16 17 17 18 18 18 LCS_GDT D 29 D 29 10 10 13 0 4 10 10 10 10 10 10 11 12 13 14 14 15 16 17 17 18 18 18 LCS_GDT Y 101 Y 101 5 6 13 1 4 5 6 7 9 10 10 11 12 13 14 15 15 16 17 17 18 18 18 LCS_GDT T 104 T 104 5 9 13 4 4 5 6 7 9 10 10 11 12 12 12 15 15 16 17 17 18 18 18 LCS_GDT T 105 T 105 5 9 13 4 4 5 6 8 9 10 10 11 12 12 12 12 14 16 17 17 18 18 18 LCS_GDT S 106 S 106 5 9 13 4 4 5 6 8 9 10 10 11 12 12 12 15 15 16 17 17 18 18 18 LCS_GDT G 107 G 107 5 9 13 4 4 5 7 8 9 10 10 11 12 12 13 15 15 16 17 17 18 18 18 LCS_GDT E 108 E 108 7 9 13 3 5 7 7 8 9 10 10 11 12 12 13 15 15 16 17 17 18 18 18 LCS_GDT K 109 K 109 7 9 13 5 6 7 7 8 9 10 10 11 12 13 13 15 15 16 17 17 18 18 18 LCS_GDT V 110 V 110 7 9 12 5 6 7 7 8 9 10 10 11 12 13 14 15 15 16 16 17 18 18 18 LCS_GDT K 111 K 111 7 9 12 5 6 7 7 8 9 10 10 11 12 13 14 15 15 16 16 17 18 18 18 LCS_GDT N 112 N 112 7 9 12 5 6 7 7 8 9 10 10 11 12 12 13 15 15 16 16 17 18 18 18 LCS_GDT H 113 H 113 7 8 12 5 6 7 7 8 9 10 10 11 12 13 14 15 15 16 16 17 18 18 18 LCS_GDT K 114 K 114 7 8 12 3 6 7 7 8 9 9 10 10 12 13 13 15 15 16 16 17 18 18 18 LCS_AVERAGE LCS_A: 16.54 ( 13.18 15.38 21.06 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 8 10 10 10 10 10 10 11 12 13 14 15 15 16 17 17 18 18 18 GDT PERCENT_AT 10.00 13.33 16.67 16.67 16.67 16.67 16.67 16.67 18.33 20.00 21.67 23.33 25.00 25.00 26.67 28.33 28.33 30.00 30.00 30.00 GDT RMS_LOCAL 0.25 0.53 0.86 0.86 0.86 0.86 0.86 0.86 2.62 3.16 3.59 3.88 4.76 4.18 4.56 5.74 5.01 5.67 5.67 5.34 GDT RMS_ALL_AT 12.35 11.60 11.27 11.27 11.27 11.27 11.27 11.27 15.26 14.89 9.28 10.20 11.01 9.73 10.00 8.64 9.29 9.96 9.96 9.60 # Checking swapping # possible swapping detected: E 108 E 108 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA A 20 A 20 0.333 0 0.077 0.088 0.419 100.000 100.000 LGA E 21 E 21 0.469 0 0.254 0.776 3.928 97.619 74.921 LGA A 22 A 22 1.308 0 0.112 0.149 1.965 90.595 87.048 LGA T 23 T 23 0.840 0 0.115 0.118 1.953 90.476 84.150 LGA V 24 V 24 0.544 0 0.103 0.113 1.118 95.238 90.612 LGA T 25 T 25 0.521 0 0.275 1.117 2.701 92.976 84.558 LGA G 26 G 26 0.182 0 0.095 0.095 1.043 92.976 92.976 LGA A 27 A 27 1.248 0 0.109 0.098 2.044 88.214 83.524 LGA Y 28 Y 28 0.893 0 0.140 0.262 2.614 83.810 73.849 LGA D 29 D 29 1.331 0 0.523 1.192 5.710 75.476 58.095 LGA Y 101 Y 101 8.943 0 0.140 1.375 11.606 0.833 7.341 LGA T 104 T 104 16.163 0 0.658 0.948 18.451 0.000 0.000 LGA T 105 T 105 18.906 0 0.062 1.043 21.304 0.000 0.000 LGA S 106 S 106 19.522 0 0.240 0.272 20.150 0.000 0.000 LGA G 107 G 107 16.875 0 0.702 0.702 17.516 0.000 0.000 LGA E 108 E 108 12.095 0 0.059 1.051 13.075 0.000 1.164 LGA K 109 K 109 13.972 0 0.137 0.824 24.291 0.000 0.000 LGA V 110 V 110 11.625 0 0.076 1.104 12.972 0.000 0.408 LGA K 111 K 111 15.587 0 0.089 1.003 22.649 0.000 0.000 LGA N 112 N 112 17.310 0 0.100 0.815 23.181 0.000 0.000 LGA H 113 H 113 12.576 0 0.051 1.082 13.815 0.000 0.524 LGA K 114 K 114 15.642 0 0.085 0.176 25.579 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 22 88 88 100.00 166 166 100.00 60 SUMMARY(RMSD_GDC): 7.729 7.788 8.924 15.137 13.986 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 22 60 4.0 10 0.86 18.750 17.968 1.037 LGA_LOCAL RMSD: 0.865 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.270 Number of assigned atoms: 22 Std_ASGN_ATOMS RMSD: 7.729 Standard rmsd on all 22 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.873670 * X + 0.340490 * Y + -0.347516 * Z + 4.610436 Y_new = -0.099995 * X + 0.573371 * Y + 0.813170 * Z + 5.389759 Z_new = 0.476132 * X + 0.745193 * Y + -0.466890 * Z + -7.534887 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.027634 -0.496251 2.130499 [DEG: -173.4707 -28.4331 122.0686 ] ZXZ: -2.737725 2.056567 0.568560 [DEG: -156.8601 117.8326 32.5761 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0579TS301_1-D1 REMARK 2: T0579-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0579TS301_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 22 60 4.0 10 0.86 17.968 7.73 REMARK ---------------------------------------------------------- MOLECULE T0579TS301_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0579 REMARK MODEL 1 REMARK PARENT N/A ATOM 2 N ALA 20 9.602 9.293 -9.695 1.00 0.00 N ATOM 3 CA ALA 20 8.685 9.201 -10.852 1.00 0.00 C ATOM 4 CB ALA 20 8.129 7.790 -10.976 1.00 0.00 C ATOM 5 O ALA 20 7.347 10.690 -9.478 1.00 0.00 O ATOM 6 C ALA 20 7.596 10.252 -10.604 1.00 0.00 C ATOM 7 N GLU 21 6.951 10.696 -11.639 1.00 0.00 N ATOM 8 CA GLU 21 5.850 11.672 -11.492 1.00 0.00 C ATOM 9 CB GLU 21 6.158 12.950 -12.276 1.00 0.00 C ATOM 10 CG GLU 21 7.381 13.703 -11.778 1.00 0.00 C ATOM 11 CD GLU 21 7.645 14.969 -12.568 1.00 0.00 C ATOM 12 OE1 GLU 21 6.937 15.203 -13.571 1.00 0.00 O ATOM 13 OE2 GLU 21 8.560 15.728 -12.184 1.00 0.00 O ATOM 14 O GLU 21 4.713 9.896 -12.727 1.00 0.00 O ATOM 15 C GLU 21 4.622 10.909 -12.001 1.00 0.00 C ATOM 16 N ALA 22 3.460 11.358 -11.614 1.00 0.00 N ATOM 17 CA ALA 22 2.209 10.707 -12.048 1.00 0.00 C ATOM 18 CB ALA 22 2.110 9.304 -11.468 1.00 0.00 C ATOM 19 O ALA 22 1.202 12.663 -11.148 1.00 0.00 O ATOM 20 C ALA 22 1.007 11.557 -11.621 1.00 0.00 C ATOM 21 N THR 23 -0.169 11.022 -11.791 1.00 0.00 N ATOM 22 CA THR 23 -1.431 11.674 -11.435 1.00 0.00 C ATOM 23 CB THR 23 -2.267 12.004 -12.685 1.00 0.00 C ATOM 24 CG2 THR 23 -3.572 12.678 -12.290 1.00 0.00 C ATOM 25 OG1 THR 23 -1.531 12.893 -13.535 1.00 0.00 O ATOM 26 O THR 23 -2.171 9.601 -10.798 1.00 0.00 O ATOM 27 C THR 23 -2.217 10.797 -10.512 1.00 0.00 C ATOM 28 N VAL 24 -2.928 11.281 -9.543 1.00 0.00 N ATOM 29 CA VAL 24 -3.768 10.429 -8.659 1.00 0.00 C ATOM 30 CB VAL 24 -4.200 11.185 -7.390 1.00 0.00 C ATOM 31 CG1 VAL 24 -5.138 10.329 -6.552 1.00 0.00 C ATOM 32 CG2 VAL 24 -2.984 11.602 -6.577 1.00 0.00 C ATOM 33 O VAL 24 -5.752 10.796 -10.046 1.00 0.00 O ATOM 34 C VAL 24 -4.971 9.975 -9.508 1.00 0.00 C ATOM 35 N THR 25 -5.137 8.669 -9.644 1.00 0.00 N ATOM 36 CA THR 25 -6.191 7.995 -10.389 1.00 0.00 C ATOM 37 CB THR 25 -5.817 6.534 -10.697 1.00 0.00 C ATOM 38 CG2 THR 25 -6.941 5.846 -11.459 1.00 0.00 C ATOM 39 OG1 THR 25 -4.633 6.499 -11.501 1.00 0.00 O ATOM 40 O THR 25 -8.427 8.652 -9.935 1.00 0.00 O ATOM 41 C THR 25 -7.401 8.131 -9.493 1.00 0.00 C ATOM 42 N GLY 26 -7.269 7.719 -8.254 1.00 0.00 N ATOM 43 CA GLY 26 -8.387 7.858 -7.269 1.00 0.00 C ATOM 44 O GLY 26 -6.635 7.313 -5.769 1.00 0.00 O ATOM 45 C GLY 26 -7.787 7.784 -5.881 1.00 0.00 C ATOM 46 N ALA 27 -8.513 8.235 -4.862 1.00 0.00 N ATOM 47 CA ALA 27 -7.945 8.131 -3.502 1.00 0.00 C ATOM 48 CB ALA 27 -7.130 9.371 -3.171 1.00 0.00 C ATOM 49 O ALA 27 -9.933 8.877 -2.634 1.00 0.00 O ATOM 50 C ALA 27 -9.137 7.934 -2.551 1.00 0.00 C ATOM 51 N TYR 28 -9.218 6.858 -1.783 1.00 0.00 N ATOM 52 CA TYR 28 -10.348 6.664 -0.873 1.00 0.00 C ATOM 53 CB TYR 28 -10.756 5.190 -0.835 1.00 0.00 C ATOM 54 CG TYR 28 -11.284 4.666 -2.151 1.00 0.00 C ATOM 55 CD1 TYR 28 -10.421 4.142 -3.106 1.00 0.00 C ATOM 56 CD2 TYR 28 -12.642 4.697 -2.435 1.00 0.00 C ATOM 57 CE1 TYR 28 -10.895 3.661 -4.312 1.00 0.00 C ATOM 58 CE2 TYR 28 -13.134 4.221 -3.635 1.00 0.00 C ATOM 59 CZ TYR 28 -12.247 3.699 -4.576 1.00 0.00 C ATOM 60 OH TYR 28 -12.721 3.222 -5.776 1.00 0.00 H ATOM 61 O TYR 28 -9.273 6.391 1.185 1.00 0.00 O ATOM 62 C TYR 28 -9.919 7.176 0.495 1.00 0.00 C ATOM 63 N ASP 29 -10.283 8.397 0.849 1.00 0.00 N ATOM 64 CA ASP 29 -9.904 9.000 2.156 1.00 0.00 C ATOM 65 CB ASP 29 -10.369 10.456 2.230 1.00 0.00 C ATOM 66 CG ASP 29 -9.598 11.363 1.291 1.00 0.00 C ATOM 67 OD1 ASP 29 -8.525 10.942 0.808 1.00 0.00 O ATOM 68 OD2 ASP 29 -10.064 12.493 1.037 1.00 0.00 O ATOM 69 O ASP 29 -9.862 8.428 4.455 1.00 0.00 O ATOM 70 C ASP 29 -10.456 8.256 3.362 1.00 0.00 C ATOM 338 N TYR 101 9.242 4.477 -6.406 1.00 0.00 N ATOM 339 CA TYR 101 8.561 3.170 -6.550 1.00 0.00 C ATOM 340 CB TYR 101 8.632 2.687 -8.000 1.00 0.00 C ATOM 341 CG TYR 101 10.039 2.458 -8.502 1.00 0.00 C ATOM 342 CD1 TYR 101 10.671 1.234 -8.311 1.00 0.00 C ATOM 343 CD2 TYR 101 10.731 3.461 -9.166 1.00 0.00 C ATOM 344 CE1 TYR 101 11.958 1.016 -8.766 1.00 0.00 C ATOM 345 CE2 TYR 101 12.018 3.260 -9.628 1.00 0.00 C ATOM 346 CZ TYR 101 12.628 2.024 -9.423 1.00 0.00 C ATOM 347 OH TYR 101 13.909 1.808 -9.877 1.00 0.00 H ATOM 348 O TYR 101 10.557 2.179 -5.504 1.00 0.00 O ATOM 349 C TYR 101 9.322 2.283 -5.543 1.00 0.00 C ATOM 353 N THR 104 6.486 -3.309 -2.602 1.00 0.00 N ATOM 354 CA THR 104 5.141 -3.341 -1.985 1.00 0.00 C ATOM 355 CB THR 104 4.096 -2.639 -2.874 1.00 0.00 C ATOM 356 CG2 THR 104 2.722 -2.688 -2.222 1.00 0.00 C ATOM 357 OG1 THR 104 4.466 -1.268 -3.060 1.00 0.00 O ATOM 358 O THR 104 5.101 -5.750 -2.387 1.00 0.00 O ATOM 359 C THR 104 4.712 -4.784 -1.723 1.00 0.00 C ATOM 360 N THR 105 3.870 -4.850 -0.707 1.00 0.00 N ATOM 361 CA THR 105 3.266 -6.071 -0.195 1.00 0.00 C ATOM 362 CB THR 105 2.324 -5.781 0.989 1.00 0.00 C ATOM 363 CG2 THR 105 3.092 -5.137 2.135 1.00 0.00 C ATOM 364 OG1 THR 105 1.289 -4.883 0.572 1.00 0.00 O ATOM 365 O THR 105 2.409 -8.090 -1.080 1.00 0.00 O ATOM 366 C THR 105 2.473 -6.854 -1.237 1.00 0.00 C ATOM 367 N SER 106 1.910 -6.187 -2.224 1.00 0.00 N ATOM 368 CA SER 106 1.135 -6.860 -3.272 1.00 0.00 C ATOM 369 CB SER 106 -0.365 -6.695 -3.019 1.00 0.00 C ATOM 370 OG SER 106 -0.743 -5.329 -3.065 1.00 0.00 O ATOM 371 O SER 106 0.911 -6.973 -5.656 1.00 0.00 O ATOM 372 C SER 106 1.436 -6.381 -4.693 1.00 0.00 C ATOM 373 N GLY 107 2.227 -5.357 -4.901 1.00 0.00 N ATOM 374 CA GLY 107 2.581 -4.826 -6.234 1.00 0.00 C ATOM 375 O GLY 107 3.894 -3.320 -4.851 1.00 0.00 O ATOM 376 C GLY 107 3.439 -3.581 -5.977 1.00 0.00 C ATOM 377 N GLU 108 3.658 -2.807 -7.026 1.00 0.00 N ATOM 378 CA GLU 108 4.458 -1.586 -6.919 1.00 0.00 C ATOM 379 CB GLU 108 4.711 -0.987 -8.304 1.00 0.00 C ATOM 380 CG GLU 108 5.591 -1.844 -9.199 1.00 0.00 C ATOM 381 CD GLU 108 5.847 -1.203 -10.550 1.00 0.00 C ATOM 382 OE1 GLU 108 5.157 -0.216 -10.879 1.00 0.00 O ATOM 383 OE2 GLU 108 6.737 -1.690 -11.278 1.00 0.00 O ATOM 384 O GLU 108 2.506 -0.452 -6.214 1.00 0.00 O ATOM 385 C GLU 108 3.727 -0.607 -6.015 1.00 0.00 C ATOM 386 N LYS 109 4.423 0.018 -5.101 1.00 0.00 N ATOM 387 CA LYS 109 3.933 0.992 -4.142 1.00 0.00 C ATOM 388 CB LYS 109 4.031 0.438 -2.719 1.00 0.00 C ATOM 389 CG LYS 109 3.556 1.400 -1.644 1.00 0.00 C ATOM 390 CD LYS 109 3.459 0.714 -0.291 1.00 0.00 C ATOM 391 CE LYS 109 4.836 0.389 0.261 1.00 0.00 C ATOM 392 NZ LYS 109 4.763 -0.183 1.635 1.00 0.00 N ATOM 393 O LYS 109 5.888 2.326 -4.588 1.00 0.00 O ATOM 394 C LYS 109 4.695 2.306 -4.237 1.00 0.00 C ATOM 395 N VAL 110 4.010 3.374 -3.921 1.00 0.00 N ATOM 396 CA VAL 110 4.586 4.712 -3.959 1.00 0.00 C ATOM 397 CB VAL 110 3.547 5.762 -4.397 1.00 0.00 C ATOM 398 CG1 VAL 110 3.054 5.469 -5.804 1.00 0.00 C ATOM 399 CG2 VAL 110 2.383 5.797 -3.417 1.00 0.00 C ATOM 400 O VAL 110 4.453 4.698 -1.604 1.00 0.00 O ATOM 401 C VAL 110 5.143 5.019 -2.582 1.00 0.00 C ATOM 402 N LYS 111 6.311 5.604 -2.543 1.00 0.00 N ATOM 403 CA LYS 111 6.965 6.008 -1.282 1.00 0.00 C ATOM 404 CB LYS 111 8.191 5.133 -1.010 1.00 0.00 C ATOM 405 CG LYS 111 7.866 3.666 -0.780 1.00 0.00 C ATOM 406 CD LYS 111 9.120 2.868 -0.456 1.00 0.00 C ATOM 407 CE LYS 111 8.799 1.397 -0.251 1.00 0.00 C ATOM 408 NZ LYS 111 10.015 0.606 0.090 1.00 0.00 N ATOM 409 O LYS 111 7.342 7.944 -2.683 1.00 0.00 O ATOM 410 C LYS 111 7.283 7.489 -1.526 1.00 0.00 C ATOM 411 N ASN 112 7.480 8.249 -0.458 1.00 0.00 N ATOM 412 CA ASN 112 7.836 9.682 -0.462 1.00 0.00 C ATOM 413 CB ASN 112 9.322 9.863 -0.783 1.00 0.00 C ATOM 414 CG ASN 112 10.206 8.918 0.007 1.00 0.00 C ATOM 415 ND2 ASN 112 10.826 7.970 -0.689 1.00 0.00 N ATOM 416 OD1 ASN 112 10.331 9.037 1.225 1.00 0.00 O ATOM 417 O ASN 112 7.556 11.248 -2.265 1.00 0.00 O ATOM 418 C ASN 112 7.017 10.501 -1.421 1.00 0.00 C ATOM 419 N HIS 113 5.716 10.387 -1.297 1.00 0.00 N ATOM 420 CA HIS 113 4.744 11.083 -2.155 1.00 0.00 C ATOM 421 CB HIS 113 3.364 10.434 -2.034 1.00 0.00 C ATOM 422 CG HIS 113 2.354 10.980 -2.995 1.00 0.00 C ATOM 423 CD2 HIS 113 1.669 10.480 -4.178 1.00 0.00 C ATOM 424 ND1 HIS 113 1.831 12.251 -2.882 1.00 0.00 N ATOM 425 CE1 HIS 113 0.955 12.453 -3.884 1.00 0.00 C ATOM 426 NE2 HIS 113 0.853 11.395 -4.663 1.00 0.00 N ATOM 427 O HIS 113 4.346 12.930 -0.658 1.00 0.00 O ATOM 428 C HIS 113 4.674 12.553 -1.787 1.00 0.00 C ATOM 429 N LYS 114 4.950 13.295 -2.825 1.00 0.00 N ATOM 430 CA LYS 114 4.983 14.749 -2.827 1.00 0.00 C ATOM 431 CB LYS 114 6.391 15.250 -3.154 1.00 0.00 C ATOM 432 CG LYS 114 7.444 14.861 -2.127 1.00 0.00 C ATOM 433 CD LYS 114 8.803 15.436 -2.485 1.00 0.00 C ATOM 434 CE LYS 114 9.852 15.058 -1.452 1.00 0.00 C ATOM 435 NZ LYS 114 11.196 15.598 -1.801 1.00 0.00 N ATOM 436 O LYS 114 3.851 14.733 -4.809 1.00 0.00 O ATOM 437 C LYS 114 4.018 15.368 -3.785 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 166 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 31.46 72.2 18 15.3 118 ARMSMC SECONDARY STRUCTURE . . 31.63 75.0 16 24.2 66 ARMSMC SURFACE . . . . . . . . 29.84 63.6 11 13.8 80 ARMSMC BURIED . . . . . . . . 33.84 85.7 7 18.4 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.51 50.0 6 11.8 51 ARMSSC1 RELIABLE SIDE CHAINS . 93.63 40.0 5 11.4 44 ARMSSC1 SECONDARY STRUCTURE . . 75.42 60.0 5 17.2 29 ARMSSC1 SURFACE . . . . . . . . 93.63 40.0 5 13.9 36 ARMSSC1 BURIED . . . . . . . . 6.03 100.0 1 6.7 15 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 35.89 66.7 3 10.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 35.89 66.7 3 12.0 25 ARMSSC2 SECONDARY STRUCTURE . . 19.06 100.0 2 11.8 17 ARMSSC2 SURFACE . . . . . . . . 35.89 66.7 3 13.6 22 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.37 0.0 1 5.0 20 ARMSSC3 RELIABLE SIDE CHAINS . 81.37 0.0 1 5.6 18 ARMSSC3 SECONDARY STRUCTURE . . 81.37 0.0 1 9.1 11 ARMSSC3 SURFACE . . . . . . . . 81.37 0.0 1 7.1 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.73 (Number of atoms: 22) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.73 22 36.7 60 CRMSCA CRN = ALL/NP . . . . . 0.3513 CRMSCA SECONDARY STRUCTURE . . 6.98 16 48.5 33 CRMSCA SURFACE . . . . . . . . 8.56 16 39.0 41 CRMSCA BURIED . . . . . . . . 4.86 6 31.6 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.99 108 36.6 295 CRMSMC SECONDARY STRUCTURE . . 7.34 79 48.2 164 CRMSMC SURFACE . . . . . . . . 8.83 79 39.1 202 CRMSMC BURIED . . . . . . . . 5.06 29 31.2 93 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.33 78 11.6 671 CRMSSC RELIABLE SIDE CHAINS . 10.45 68 10.6 641 CRMSSC SECONDARY STRUCTURE . . 10.26 65 16.4 396 CRMSSC SURFACE . . . . . . . . 11.14 59 12.6 467 CRMSSC BURIED . . . . . . . . 7.23 19 9.3 204 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.07 166 18.2 911 CRMSALL SECONDARY STRUCTURE . . 8.84 129 24.4 528 CRMSALL SURFACE . . . . . . . . 9.88 123 19.5 631 CRMSALL BURIED . . . . . . . . 6.18 43 15.4 280 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.947 1.000 0.500 22 36.7 60 ERRCA SECONDARY STRUCTURE . . 6.190 1.000 0.500 16 48.5 33 ERRCA SURFACE . . . . . . . . 7.919 1.000 0.500 16 39.0 41 ERRCA BURIED . . . . . . . . 4.356 1.000 0.500 6 31.6 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.161 1.000 0.500 108 36.6 295 ERRMC SECONDARY STRUCTURE . . 6.509 1.000 0.500 79 48.2 164 ERRMC SURFACE . . . . . . . . 8.129 1.000 0.500 79 39.1 202 ERRMC BURIED . . . . . . . . 4.522 1.000 0.500 29 31.2 93 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.568 1.000 0.500 78 11.6 671 ERRSC RELIABLE SIDE CHAINS . 9.792 1.000 0.500 68 10.6 641 ERRSC SECONDARY STRUCTURE . . 9.399 1.000 0.500 65 16.4 396 ERRSC SURFACE . . . . . . . . 10.515 1.000 0.500 59 12.6 467 ERRSC BURIED . . . . . . . . 6.628 1.000 0.500 19 9.3 204 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.193 1.000 0.500 166 18.2 911 ERRALL SECONDARY STRUCTURE . . 7.868 1.000 0.500 129 24.4 528 ERRALL SURFACE . . . . . . . . 9.136 1.000 0.500 123 19.5 631 ERRALL BURIED . . . . . . . . 5.496 1.000 0.500 43 15.4 280 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 1 1 9 15 22 60 DISTCA CA (P) 1.67 1.67 1.67 15.00 25.00 60 DISTCA CA (RMS) 0.59 0.59 0.59 3.78 5.37 DISTCA ALL (N) 2 4 12 43 107 166 911 DISTALL ALL (P) 0.22 0.44 1.32 4.72 11.75 911 DISTALL ALL (RMS) 0.78 1.08 2.22 3.64 6.38 DISTALL END of the results output