####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 49 ( 196), selected 49 , name T0579AL396_1-D2 # Molecule2: number of CA atoms 64 ( 966), selected 49 , name T0579-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0579AL396_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 30 - 45 4.90 16.22 LONGEST_CONTINUOUS_SEGMENT: 16 35 - 50 4.72 14.18 LONGEST_CONTINUOUS_SEGMENT: 16 36 - 51 4.93 15.09 LONGEST_CONTINUOUS_SEGMENT: 16 41 - 56 4.98 13.05 LCS_AVERAGE: 23.60 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 31 - 41 1.91 16.96 LCS_AVERAGE: 11.51 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 33 - 37 0.72 16.37 LONGEST_CONTINUOUS_SEGMENT: 5 34 - 38 0.79 14.77 LONGEST_CONTINUOUS_SEGMENT: 5 63 - 67 0.86 18.24 LCS_AVERAGE: 6.15 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 49 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 30 T 30 4 5 16 3 4 4 5 6 8 12 13 13 14 17 18 19 22 23 24 27 28 29 33 LCS_GDT T 31 T 31 4 11 16 3 4 5 8 10 11 12 13 14 15 17 18 20 22 23 26 28 30 31 33 LCS_GDT A 32 A 32 4 11 16 3 4 4 8 10 11 12 13 14 15 17 18 20 22 25 27 29 30 31 33 LCS_GDT Y 33 Y 33 5 11 16 3 4 5 6 10 11 12 12 12 15 18 20 21 22 25 27 29 30 31 34 LCS_GDT V 34 V 34 5 11 16 4 4 5 8 10 11 12 12 13 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT V 35 V 35 5 11 16 4 4 5 8 10 11 12 13 13 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT S 36 S 36 5 11 16 4 4 5 8 10 11 12 13 13 15 17 20 21 22 25 26 29 30 32 34 LCS_GDT Y 37 Y 37 5 11 16 4 4 5 8 10 11 12 12 12 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT T 38 T 38 5 11 16 3 4 5 8 10 11 12 12 12 15 16 20 21 22 25 27 29 30 31 34 LCS_GDT P 39 P 39 3 11 16 3 3 4 7 10 11 12 13 14 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT T 40 T 40 3 11 16 0 3 4 8 10 11 12 13 14 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT N 41 N 41 3 11 16 3 3 5 8 10 11 12 13 14 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT G 42 G 42 4 8 16 3 4 5 7 8 9 12 13 14 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT G 43 G 43 4 8 16 3 4 5 7 8 10 12 13 14 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT Q 44 Q 44 4 8 16 3 4 5 7 9 10 12 13 14 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT R 45 R 45 4 8 16 3 4 5 6 8 9 11 11 13 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT V 46 V 46 4 8 16 3 4 5 7 8 9 11 11 13 14 16 18 19 22 25 27 29 30 32 34 LCS_GDT D 47 D 47 4 8 16 3 4 5 7 8 9 11 11 13 14 16 18 19 21 25 27 29 30 32 34 LCS_GDT H 48 H 48 4 8 16 3 4 5 7 7 9 11 11 13 14 16 18 19 22 25 27 29 30 32 34 LCS_GDT H 49 H 49 4 8 16 3 4 5 7 7 9 11 11 13 14 16 18 19 22 25 27 29 30 32 34 LCS_GDT K 50 K 50 4 8 16 3 4 5 7 7 8 9 10 12 14 16 18 19 21 23 26 28 30 32 34 LCS_GDT W 51 W 51 4 8 16 3 3 4 5 6 8 8 9 10 11 13 14 15 16 19 21 25 28 32 34 LCS_GDT V 52 V 52 3 8 16 3 4 4 7 7 8 8 9 9 11 13 13 14 16 19 21 25 28 32 34 LCS_GDT I 53 I 53 3 8 16 3 3 4 7 7 8 8 9 10 11 13 13 14 16 18 21 25 28 32 34 LCS_GDT Q 54 Q 54 3 5 16 3 3 3 4 4 6 7 9 10 11 13 13 14 16 19 21 25 28 32 34 LCS_GDT E 55 E 55 3 5 16 0 3 3 4 4 5 7 10 11 13 15 18 19 21 23 27 29 30 32 34 LCS_GDT E 56 E 56 4 5 16 3 4 5 6 8 10 12 13 14 15 18 19 21 22 25 27 29 30 32 34 LCS_GDT I 57 I 57 4 5 15 3 4 4 5 9 10 12 13 14 15 18 20 21 22 25 27 29 30 31 34 LCS_GDT K 58 K 58 4 5 15 3 4 4 5 6 8 9 11 12 14 17 18 19 22 23 24 27 28 31 33 LCS_GDT D 59 D 59 4 6 15 3 4 4 6 8 8 9 13 13 14 17 18 19 22 23 24 27 29 31 33 LCS_GDT A 60 A 60 4 6 15 1 4 4 6 9 10 12 13 14 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT G 61 G 61 4 6 15 3 4 4 6 9 10 12 13 14 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT D 62 D 62 4 6 15 3 4 4 4 8 8 9 12 13 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT K 63 K 63 5 6 15 3 4 5 6 9 10 12 13 14 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT T 64 T 64 5 6 15 3 4 5 6 8 8 10 13 14 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT L 65 L 65 5 6 15 3 4 5 6 8 8 10 13 13 15 18 20 21 22 25 27 29 30 32 34 LCS_GDT Q 66 Q 66 5 6 15 3 4 5 6 8 8 10 13 13 14 17 18 19 22 23 26 29 30 32 34 LCS_GDT P 67 P 67 5 6 15 3 4 5 6 8 8 10 13 13 14 15 17 19 22 23 24 27 28 29 33 LCS_GDT G 68 G 68 4 6 15 3 4 5 6 8 8 10 13 13 14 17 18 19 22 23 24 27 28 29 33 LCS_GDT D 69 D 69 4 6 15 3 4 5 6 6 8 9 10 11 12 14 18 19 22 23 24 27 28 29 33 LCS_GDT Q 70 Q 70 4 6 15 3 4 5 6 6 8 9 10 11 12 12 14 16 19 22 24 27 28 29 33 LCS_GDT V 71 V 71 4 6 14 3 4 5 6 6 8 9 10 11 12 12 12 13 15 19 21 24 26 29 33 LCS_GDT I 72 I 72 4 6 14 3 4 4 5 6 8 9 10 11 12 12 12 16 20 23 27 29 30 32 34 LCS_GDT L 73 L 73 4 6 14 3 4 4 6 6 8 9 10 11 12 12 12 13 14 19 21 25 28 32 34 LCS_GDT E 74 E 74 4 6 14 3 4 4 5 6 8 9 10 11 12 12 12 13 14 17 20 24 28 32 34 LCS_GDT A 75 A 75 3 6 14 3 3 4 5 6 8 9 10 11 12 12 12 13 14 14 15 17 19 22 24 LCS_GDT S 76 S 76 3 6 14 3 3 3 4 6 8 9 10 11 12 12 12 13 14 14 15 16 17 19 20 LCS_GDT H 77 H 77 3 6 14 0 3 3 4 6 6 9 10 11 12 12 12 13 14 14 15 16 17 19 20 LCS_GDT K 93 K 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 9 9 9 12 17 20 21 LCS_AVERAGE LCS_A: 13.75 ( 6.15 11.51 23.60 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 5 8 10 11 12 13 14 15 18 20 21 22 25 27 29 30 32 34 GDT PERCENT_AT 6.25 6.25 7.81 12.50 15.62 17.19 18.75 20.31 21.88 23.44 28.12 31.25 32.81 34.38 39.06 42.19 45.31 46.87 50.00 53.12 GDT RMS_LOCAL 0.24 0.24 0.72 1.51 1.76 1.91 2.12 2.85 2.98 3.17 4.19 4.39 4.53 4.68 5.26 5.70 6.02 6.16 7.08 7.15 GDT RMS_ALL_AT 15.87 15.87 16.37 16.74 16.92 16.96 16.90 12.89 12.77 12.66 12.36 12.61 12.58 12.61 12.20 12.00 11.96 11.86 11.42 11.49 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 30 T 30 10.223 3 0.673 0.673 11.093 3.571 2.041 LGA T 31 T 31 3.188 3 0.447 0.447 5.490 44.167 25.238 LGA A 32 A 32 2.501 1 0.034 0.034 5.742 43.690 34.952 LGA Y 33 Y 33 8.243 8 0.655 0.655 10.282 6.905 2.302 LGA V 34 V 34 10.975 3 0.097 0.097 10.975 0.238 0.136 LGA V 35 V 35 9.196 3 0.029 0.029 11.512 0.476 0.272 LGA S 36 S 36 11.638 2 0.015 0.015 11.638 0.119 0.079 LGA Y 37 Y 37 8.798 8 0.133 0.133 10.702 1.071 0.357 LGA T 38 T 38 9.399 3 0.128 0.128 9.399 5.357 3.061 LGA P 39 P 39 3.173 3 0.263 0.263 5.421 38.095 21.769 LGA T 40 T 40 3.030 3 0.626 0.626 4.030 52.262 29.864 LGA N 41 N 41 3.736 4 0.620 0.620 3.736 54.048 27.024 LGA G 42 G 42 3.048 0 0.043 0.043 3.324 51.786 51.786 LGA G 43 G 43 2.640 0 0.129 0.129 2.640 62.857 62.857 LGA Q 44 Q 44 2.730 5 0.067 0.067 6.015 42.619 18.942 LGA R 45 R 45 8.467 7 0.266 0.266 8.519 7.976 2.900 LGA V 46 V 46 9.873 3 0.177 0.177 13.086 0.476 0.272 LGA D 47 D 47 13.709 4 0.471 0.471 13.709 0.000 0.000 LGA H 48 H 48 12.640 6 0.233 0.233 12.974 0.000 0.000 LGA H 49 H 49 12.265 6 0.150 0.150 12.745 0.000 0.000 LGA K 50 K 50 14.228 5 0.247 0.247 15.290 0.000 0.000 LGA W 51 W 51 16.659 10 0.351 0.351 16.659 0.000 0.000 LGA V 52 V 52 17.050 3 0.581 0.581 18.535 0.000 0.000 LGA I 53 I 53 16.573 4 0.114 0.114 16.573 0.000 0.000 LGA Q 54 Q 54 15.430 5 0.598 0.598 15.975 0.000 0.000 LGA E 55 E 55 9.789 5 0.691 0.691 11.839 5.952 2.646 LGA E 56 E 56 3.275 5 0.616 0.616 5.750 44.643 19.841 LGA I 57 I 57 3.088 4 0.109 0.109 4.800 44.405 22.202 LGA K 58 K 58 8.236 5 0.416 0.416 9.124 6.548 2.910 LGA D 59 D 59 8.861 4 0.638 0.638 8.861 8.571 4.286 LGA A 60 A 60 2.695 1 0.498 0.498 5.091 49.881 39.905 LGA G 61 G 61 1.040 0 0.447 0.447 4.627 61.071 61.071 LGA D 62 D 62 6.070 4 0.043 0.043 6.677 23.452 11.726 LGA K 63 K 63 1.875 5 0.683 0.683 2.767 64.881 28.836 LGA T 64 T 64 4.671 3 0.193 0.193 6.288 29.524 16.871 LGA L 65 L 65 5.708 4 0.098 0.098 8.249 16.190 8.095 LGA Q 66 Q 66 11.279 5 0.031 0.031 12.705 0.357 0.159 LGA P 67 P 67 15.835 3 0.183 0.183 16.470 0.000 0.000 LGA G 68 G 68 17.116 0 0.667 0.667 17.466 0.000 0.000 LGA D 69 D 69 16.930 4 0.158 0.158 16.930 0.000 0.000 LGA Q 70 Q 70 16.583 5 0.563 0.563 17.490 0.000 0.000 LGA V 71 V 71 15.729 3 0.640 0.640 15.729 0.000 0.000 LGA I 72 I 72 11.029 4 0.158 0.158 13.563 0.000 0.000 LGA L 73 L 73 15.934 4 0.154 0.154 16.135 0.000 0.000 LGA E 74 E 74 18.085 5 0.619 0.619 19.578 0.000 0.000 LGA A 75 A 75 22.948 1 0.036 0.036 22.948 0.000 0.000 LGA S 76 S 76 24.107 2 0.043 0.043 27.615 0.000 0.000 LGA H 77 H 77 26.112 6 0.082 0.082 26.112 0.000 0.000 LGA K 93 K 93 33.098 5 0.346 0.346 33.098 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 49 196 196 100.00 385 196 50.91 64 SUMMARY(RMSD_GDC): 11.258 11.193 11.193 12.050 7.850 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 49 64 4.0 13 2.85 20.312 18.078 0.441 LGA_LOCAL RMSD: 2.848 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.886 Number of assigned atoms: 49 Std_ASGN_ATOMS RMSD: 11.258 Standard rmsd on all 49 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.894494 * X + -0.364841 * Y + 0.258401 * Z + 9.587302 Y_new = 0.042814 * X + 0.505416 * Y + 0.861813 * Z + 4.032343 Z_new = -0.445024 * X + 0.781950 * Y + -0.436471 * Z + 11.054949 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.093765 0.461201 2.079901 [DEG: 177.2597 26.4249 119.1695 ] ZXZ: 2.850288 2.022470 -0.517405 [DEG: 163.3095 115.8790 -29.6451 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0579AL396_1-D2 REMARK 2: T0579-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0579AL396_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 49 64 4.0 13 2.85 18.078 11.26 REMARK ---------------------------------------------------------- MOLECULE T0579AL396_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2rqe_A ATOM 89 N THR 30 -5.413 0.716 12.772 1.00 0.00 N ATOM 90 CA THR 30 -5.167 2.024 13.368 1.00 0.00 C ATOM 91 C THR 30 -5.816 3.129 12.541 1.00 0.00 C ATOM 92 O THR 30 -5.687 4.311 12.855 1.00 0.00 O ATOM 93 N THR 31 -6.513 2.735 11.479 1.00 0.00 N ATOM 94 CA THR 31 -7.171 3.704 10.623 1.00 0.00 C ATOM 95 C THR 31 -6.981 3.398 9.149 1.00 0.00 C ATOM 96 O THR 31 -6.939 4.307 8.321 1.00 0.00 O ATOM 97 N ALA 32 -6.863 2.115 8.823 1.00 0.00 N ATOM 98 CA ALA 32 -6.673 1.693 7.441 1.00 0.00 C ATOM 99 C ALA 32 -8.007 1.633 6.701 1.00 0.00 C ATOM 100 O ALA 32 -9.069 1.572 7.320 1.00 0.00 O ATOM 101 N TYR 33 -7.943 1.650 5.373 1.00 0.00 N ATOM 102 CA TYR 33 -9.145 1.602 4.550 1.00 0.00 C ATOM 103 C TYR 33 -9.060 0.469 3.531 1.00 0.00 C ATOM 104 O TYR 33 -10.059 0.099 2.912 1.00 0.00 O ATOM 105 N VAL 34 -7.862 -0.079 3.364 1.00 0.00 N ATOM 106 CA VAL 34 -7.644 -1.171 2.422 1.00 0.00 C ATOM 107 C VAL 34 -6.456 -2.027 2.844 1.00 0.00 C ATOM 108 O VAL 34 -5.436 -1.510 3.303 1.00 0.00 O ATOM 109 N VAL 35 -6.592 -3.340 2.685 1.00 0.00 N ATOM 110 CA VAL 35 -5.527 -4.268 3.049 1.00 0.00 C ATOM 111 C VAL 35 -5.302 -5.297 1.945 1.00 0.00 C ATOM 112 O VAL 35 -6.245 -5.738 1.291 1.00 0.00 O ATOM 113 N SER 36 -4.043 -5.672 1.743 1.00 0.00 N ATOM 114 CA SER 36 -3.692 -6.649 0.720 1.00 0.00 C ATOM 115 C SER 36 -2.801 -7.747 1.291 1.00 0.00 C ATOM 116 O SER 36 -1.793 -7.467 1.938 1.00 0.00 O ATOM 117 N TYR 37 -3.181 -8.997 1.047 1.00 0.00 N ATOM 118 CA TYR 37 -2.417 -10.137 1.539 1.00 0.00 C ATOM 119 C TYR 37 -1.835 -10.943 0.381 1.00 0.00 C ATOM 120 O TYR 37 -2.569 -11.446 -0.470 1.00 0.00 O ATOM 121 N THR 38 -0.511 -11.061 0.356 1.00 0.00 N ATOM 122 CA THR 38 0.171 -11.804 -0.697 1.00 0.00 C ATOM 123 C THR 38 1.486 -12.383 -0.189 1.00 0.00 C ATOM 124 O THR 38 2.529 -11.734 -0.256 1.00 0.00 O ATOM 125 N PRO 39 1.430 -13.610 0.323 1.00 0.00 N ATOM 126 CA PRO 39 2.624 -14.256 0.836 1.00 0.00 C ATOM 127 C PRO 39 2.618 -15.754 0.606 1.00 0.00 C ATOM 128 O PRO 39 1.692 -16.293 -0.001 1.00 0.00 O ATOM 129 N THR 40 3.654 -16.430 1.092 1.00 0.00 N ATOM 130 CA THR 40 3.765 -17.875 0.936 1.00 0.00 C ATOM 131 C THR 40 4.197 -18.531 2.244 1.00 0.00 C ATOM 132 O THR 40 4.166 -17.905 3.305 1.00 0.00 O ATOM 133 N ASN 41 4.601 -19.794 2.162 1.00 0.00 N ATOM 134 CA ASN 41 5.040 -20.535 3.339 1.00 0.00 C ATOM 135 C ASN 41 6.407 -21.170 3.104 1.00 0.00 C ATOM 136 O ASN 41 6.736 -21.561 1.985 1.00 0.00 O ATOM 137 N GLY 42 7.198 -21.270 4.168 1.00 0.00 N ATOM 138 CA GLY 42 8.529 -21.859 4.076 1.00 0.00 C ATOM 139 C GLY 42 9.194 -21.500 2.751 1.00 0.00 C ATOM 140 O GLY 42 9.936 -22.299 2.182 1.00 0.00 O ATOM 141 N GLY 43 8.924 -20.291 2.269 1.00 0.00 N ATOM 142 CA GLY 43 9.496 -19.826 1.011 1.00 0.00 C ATOM 143 C GLY 43 9.373 -18.310 0.884 1.00 0.00 C ATOM 144 O GLY 43 8.294 -17.748 1.064 1.00 0.00 O ATOM 145 N GLN 44 10.489 -17.656 0.575 1.00 0.00 N ATOM 146 CA GLN 44 10.505 -16.205 0.427 1.00 0.00 C ATOM 147 C GLN 44 10.523 -15.810 -1.047 1.00 0.00 C ATOM 148 O GLN 44 11.047 -16.537 -1.890 1.00 0.00 O ATOM 149 N ARG 45 9.945 -14.651 -1.349 1.00 0.00 N ATOM 150 CA ARG 45 9.896 -14.158 -2.721 1.00 0.00 C ATOM 151 C ARG 45 10.941 -13.071 -2.946 1.00 0.00 C ATOM 152 O ARG 45 11.754 -12.787 -2.067 1.00 0.00 O ATOM 153 N VAL 46 10.913 -12.465 -4.129 1.00 0.00 N ATOM 154 CA VAL 46 11.861 -11.410 -4.469 1.00 0.00 C ATOM 155 C VAL 46 11.210 -10.365 -5.371 1.00 0.00 C ATOM 156 O VAL 46 10.350 -10.684 -6.190 1.00 0.00 O ATOM 157 N ASP 47 11.627 -9.112 -5.212 1.00 0.00 N ATOM 158 CA ASP 47 11.075 -8.039 -6.018 1.00 0.00 C ATOM 159 C ASP 47 9.602 -7.806 -5.743 1.00 0.00 C ATOM 160 O ASP 47 8.835 -7.497 -6.655 1.00 0.00 O ATOM 161 N HIS 48 9.207 -7.955 -4.484 1.00 0.00 N ATOM 162 CA HIS 48 7.815 -7.761 -4.092 1.00 0.00 C ATOM 163 C HIS 48 6.868 -8.273 -5.171 1.00 0.00 C ATOM 164 O HIS 48 6.351 -7.496 -5.974 1.00 0.00 O ATOM 165 N HIS 49 6.643 -9.583 -5.184 1.00 0.00 N ATOM 166 CA HIS 49 5.758 -10.197 -6.166 1.00 0.00 C ATOM 167 C HIS 49 4.642 -10.978 -5.477 1.00 0.00 C ATOM 168 O HIS 49 4.656 -11.160 -4.260 1.00 0.00 O ATOM 169 N LYS 50 3.675 -11.438 -6.266 1.00 0.00 N ATOM 170 CA LYS 50 2.554 -12.200 -5.734 1.00 0.00 C ATOM 171 C LYS 50 2.948 -13.651 -5.477 1.00 0.00 C ATOM 172 O LYS 50 2.969 -14.471 -6.393 1.00 0.00 O ATOM 173 N TRP 51 3.261 -13.961 -4.222 1.00 0.00 N ATOM 174 CA TRP 51 3.653 -15.313 -3.868 1.00 0.00 C ATOM 175 C TRP 51 2.590 -16.334 -4.220 1.00 0.00 C ATOM 176 O TRP 51 2.284 -16.544 -5.395 1.00 0.00 O ATOM 177 N VAL 52 2.025 -16.975 -3.201 1.00 0.00 N ATOM 178 CA VAL 52 0.991 -17.982 -3.410 1.00 0.00 C ATOM 179 C VAL 52 -0.389 -17.419 -3.085 1.00 0.00 C ATOM 180 O VAL 52 -1.306 -17.488 -3.905 1.00 0.00 O ATOM 181 N ILE 53 -0.529 -16.863 -1.888 1.00 0.00 N ATOM 182 CA ILE 53 -1.799 -16.289 -1.455 1.00 0.00 C ATOM 183 C ILE 53 -2.071 -14.971 -2.171 1.00 0.00 C ATOM 184 O ILE 53 -1.145 -14.226 -2.494 1.00 0.00 O ATOM 185 N GLN 54 -3.346 -14.688 -2.415 1.00 0.00 N ATOM 186 CA GLN 54 -3.740 -13.460 -3.096 1.00 0.00 C ATOM 187 C GLN 54 -5.132 -13.017 -2.657 1.00 0.00 C ATOM 188 O GLN 54 -6.113 -13.737 -2.845 1.00 0.00 O ATOM 189 N GLU 55 -5.210 -11.826 -2.070 1.00 0.00 N ATOM 190 CA GLU 55 -6.480 -11.287 -1.602 1.00 0.00 C ATOM 191 C GLU 55 -6.313 -9.853 -1.107 1.00 0.00 C ATOM 192 O GLU 55 -5.198 -9.404 -0.843 1.00 0.00 O ATOM 193 N GLU 56 -7.428 -9.142 -0.985 1.00 0.00 N ATOM 194 CA GLU 56 -7.406 -7.760 -0.521 1.00 0.00 C ATOM 195 C GLU 56 -8.611 -7.464 0.366 1.00 0.00 C ATOM 196 O GLU 56 -9.758 -7.575 -0.070 1.00 0.00 O ATOM 197 N ILE 57 -8.343 -7.090 1.612 1.00 0.00 N ATOM 198 CA ILE 57 -9.406 -6.778 2.561 1.00 0.00 C ATOM 199 C ILE 57 -9.844 -5.323 2.438 1.00 0.00 C ATOM 200 O ILE 57 -9.104 -4.407 2.802 1.00 0.00 O ATOM 201 N LYS 58 -11.053 -5.114 1.925 1.00 0.00 N ATOM 202 CA LYS 58 -11.590 -3.771 1.756 1.00 0.00 C ATOM 203 C LYS 58 -12.454 -3.370 2.945 1.00 0.00 C ATOM 204 O LYS 58 -13.374 -2.562 2.814 1.00 0.00 O ATOM 205 N ASP 59 -12.152 -3.937 4.108 1.00 0.00 N ATOM 206 CA ASP 59 -12.900 -3.637 5.323 1.00 0.00 C ATOM 207 C ASP 59 -12.494 -4.574 6.457 1.00 0.00 C ATOM 208 O ASP 59 -12.355 -5.783 6.275 1.00 0.00 O ATOM 209 N ALA 60 -12.298 -4.004 7.656 1.00 0.00 N ATOM 210 CA ALA 60 -11.907 -4.770 8.842 1.00 0.00 C ATOM 211 C ALA 60 -13.028 -5.673 9.345 1.00 0.00 C ATOM 212 O ALA 60 -14.088 -5.768 8.725 1.00 0.00 O ATOM 213 N GLY 61 -12.789 -6.335 10.472 1.00 0.00 N ATOM 214 CA GLY 61 -13.779 -7.229 11.060 1.00 0.00 C ATOM 215 C GLY 61 -13.527 -7.413 12.553 1.00 0.00 C ATOM 216 O GLY 61 -12.557 -8.053 12.954 1.00 0.00 O ATOM 217 N ASP 62 -14.409 -6.848 13.371 1.00 0.00 N ATOM 218 CA ASP 62 -14.283 -6.951 14.820 1.00 0.00 C ATOM 219 C ASP 62 -13.311 -5.904 15.357 1.00 0.00 C ATOM 220 O ASP 62 -12.854 -5.992 16.496 1.00 0.00 O ATOM 221 N LYS 63 -12.999 -4.913 14.528 1.00 0.00 N ATOM 222 CA LYS 63 -12.085 -3.863 14.937 1.00 0.00 C ATOM 223 C LYS 63 -10.705 -4.027 14.328 1.00 0.00 C ATOM 224 O LYS 63 -9.915 -3.083 14.303 1.00 0.00 O ATOM 225 N THR 64 -10.416 -5.228 13.838 1.00 0.00 N ATOM 226 CA THR 64 -9.122 -5.512 13.230 1.00 0.00 C ATOM 227 C THR 64 -9.294 -6.261 11.912 1.00 0.00 C ATOM 228 O THR 64 -10.341 -6.857 11.658 1.00 0.00 O ATOM 229 N LEU 65 -8.261 -6.225 11.077 1.00 0.00 N ATOM 230 CA LEU 65 -8.298 -6.901 9.786 1.00 0.00 C ATOM 231 C LEU 65 -7.910 -8.368 9.927 1.00 0.00 C ATOM 232 O LEU 65 -6.728 -8.713 9.900 1.00 0.00 O ATOM 233 N GLN 66 -8.911 -9.229 10.077 1.00 0.00 N ATOM 234 CA GLN 66 -8.673 -10.660 10.222 1.00 0.00 C ATOM 235 C GLN 66 -8.849 -11.384 8.890 1.00 0.00 C ATOM 236 O GLN 66 -9.723 -11.039 8.094 1.00 0.00 O ATOM 237 N PRO 67 -8.013 -12.390 8.656 1.00 0.00 N ATOM 238 CA PRO 67 -8.076 -13.164 7.421 1.00 0.00 C ATOM 239 C PRO 67 -7.889 -14.652 7.702 1.00 0.00 C ATOM 240 O PRO 67 -7.259 -15.034 8.687 1.00 0.00 O ATOM 241 N GLY 68 -8.443 -15.487 6.828 1.00 0.00 N ATOM 242 CA GLY 68 -8.339 -16.933 6.983 1.00 0.00 C ATOM 243 C GLY 68 -8.233 -17.618 5.624 1.00 0.00 C ATOM 244 O GLY 68 -8.941 -17.262 4.681 1.00 0.00 O ATOM 245 N ASP 69 -7.345 -18.602 5.531 1.00 0.00 N ATOM 246 CA ASP 69 -7.147 -19.338 4.287 1.00 0.00 C ATOM 247 C ASP 69 -7.619 -20.781 4.428 1.00 0.00 C ATOM 248 O ASP 69 -8.134 -21.177 5.475 1.00 0.00 O ATOM 249 N GLN 70 -7.444 -21.563 3.368 1.00 0.00 N ATOM 250 CA GLN 70 -7.855 -22.961 3.373 1.00 0.00 C ATOM 251 C GLN 70 -6.867 -23.821 2.591 1.00 0.00 C ATOM 252 O GLN 70 -7.134 -24.987 2.304 1.00 0.00 O ATOM 253 N VAL 71 -5.723 -23.236 2.246 1.00 0.00 N ATOM 254 CA VAL 71 -4.696 -23.949 1.495 1.00 0.00 C ATOM 255 C VAL 71 -3.346 -23.855 2.199 1.00 0.00 C ATOM 256 O VAL 71 -2.316 -24.234 1.641 1.00 0.00 O ATOM 257 N ILE 72 -3.358 -23.348 3.427 1.00 0.00 N ATOM 258 CA ILE 72 -2.135 -23.205 4.207 1.00 0.00 C ATOM 259 C ILE 72 -1.959 -24.376 5.169 1.00 0.00 C ATOM 260 O ILE 72 -2.586 -24.423 6.226 1.00 0.00 O ATOM 261 N LEU 73 -1.103 -25.321 4.793 1.00 0.00 N ATOM 262 CA LEU 73 -0.843 -26.490 5.624 1.00 0.00 C ATOM 263 C LEU 73 0.464 -26.338 6.394 1.00 0.00 C ATOM 264 O LEU 73 1.526 -26.747 5.922 1.00 0.00 O ATOM 265 N GLU 74 0.380 -25.747 7.580 1.00 0.00 N ATOM 266 CA GLU 74 1.557 -25.540 8.417 1.00 0.00 C ATOM 267 C GLU 74 1.259 -25.889 9.872 1.00 0.00 C ATOM 268 O GLU 74 0.110 -26.127 10.242 1.00 0.00 O ATOM 269 N ALA 75 2.302 -25.912 10.695 1.00 0.00 N ATOM 270 CA ALA 75 2.153 -26.226 12.111 1.00 0.00 C ATOM 271 C ALA 75 3.292 -25.620 12.925 1.00 0.00 C ATOM 272 O ALA 75 4.384 -25.387 12.406 1.00 0.00 O ATOM 273 N SER 76 3.030 -25.370 14.204 1.00 0.00 N ATOM 274 CA SER 76 4.034 -24.794 15.090 1.00 0.00 C ATOM 275 C SER 76 5.438 -25.246 14.698 1.00 0.00 C ATOM 276 O SER 76 5.761 -26.430 14.769 1.00 0.00 O ATOM 277 N HIS 77 6.267 -24.292 14.285 1.00 0.00 N ATOM 278 CA HIS 77 7.626 -24.611 13.891 1.00 0.00 C ATOM 279 C HIS 77 7.959 -24.108 12.499 1.00 0.00 C ATOM 280 O HIS 77 9.130 -23.952 12.153 1.00 0.00 O ATOM 281 N LYS 93 6.928 -23.855 11.701 1.00 0.00 N ATOM 282 CA LYS 93 7.117 -23.368 10.340 1.00 0.00 C ATOM 283 C LYS 93 7.523 -21.897 10.341 1.00 0.00 C ATOM 284 O LYS 93 7.764 -21.309 11.396 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 196 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 84.11 29.8 94 74.6 126 ARMSMC SECONDARY STRUCTURE . . 69.80 38.9 36 69.2 52 ARMSMC SURFACE . . . . . . . . 86.91 21.7 60 73.2 82 ARMSMC BURIED . . . . . . . . 78.93 44.1 34 77.3 44 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 47 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 23 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 35 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 15 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 14 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 1 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.26 (Number of atoms: 49) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.26 49 76.6 64 CRMSCA CRN = ALL/NP . . . . . 0.2298 CRMSCA SECONDARY STRUCTURE . . 9.35 18 69.2 26 CRMSCA SURFACE . . . . . . . . 12.23 32 76.2 42 CRMSCA BURIED . . . . . . . . 9.15 17 77.3 22 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.19 196 62.4 314 CRMSMC SECONDARY STRUCTURE . . 9.27 72 55.4 130 CRMSMC SURFACE . . . . . . . . 12.12 128 62.4 205 CRMSMC BURIED . . . . . . . . 9.21 68 62.4 109 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 710 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 674 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 312 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 464 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 246 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.19 196 20.3 966 CRMSALL SECONDARY STRUCTURE . . 9.27 72 17.3 416 CRMSALL SURFACE . . . . . . . . 12.12 128 20.3 632 CRMSALL BURIED . . . . . . . . 9.21 68 20.4 334 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.917 1.000 0.500 49 76.6 64 ERRCA SECONDARY STRUCTURE . . 9.058 1.000 0.500 18 69.2 26 ERRCA SURFACE . . . . . . . . 10.486 1.000 0.500 32 76.2 42 ERRCA BURIED . . . . . . . . 8.845 1.000 0.500 17 77.3 22 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.853 1.000 0.500 196 62.4 314 ERRMC SECONDARY STRUCTURE . . 8.987 1.000 0.500 72 55.4 130 ERRMC SURFACE . . . . . . . . 10.351 1.000 0.500 128 62.4 205 ERRMC BURIED . . . . . . . . 8.916 1.000 0.500 68 62.4 109 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 710 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 674 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 312 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 464 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 246 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.853 1.000 0.500 196 20.3 966 ERRALL SECONDARY STRUCTURE . . 8.987 1.000 0.500 72 17.3 416 ERRALL SURFACE . . . . . . . . 10.351 1.000 0.500 128 20.3 632 ERRALL BURIED . . . . . . . . 8.916 1.000 0.500 68 20.4 334 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 5 33 49 64 DISTCA CA (P) 0.00 1.56 4.69 7.81 51.56 64 DISTCA CA (RMS) 0.00 1.97 2.43 3.00 7.42 DISTCA ALL (N) 0 3 10 24 127 196 966 DISTALL ALL (P) 0.00 0.31 1.04 2.48 13.15 966 DISTALL ALL (RMS) 0.00 1.64 2.34 3.36 7.29 DISTALL END of the results output