####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 53 ( 212), selected 53 , name T0579AL396_1-D1 # Molecule2: number of CA atoms 60 ( 911), selected 53 , name T0579-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0579AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 94 - 117 4.92 13.57 LCS_AVERAGE: 34.47 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 94 - 103 1.56 13.89 LCS_AVERAGE: 12.48 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 98 - 103 0.78 14.12 LONGEST_CONTINUOUS_SEGMENT: 6 109 - 114 0.72 17.09 LCS_AVERAGE: 7.70 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 53 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 1 M 1 3 5 13 3 3 3 4 5 5 5 5 7 7 7 7 7 10 10 14 15 16 24 26 LCS_GDT K 2 K 2 3 5 16 3 3 3 4 6 6 7 9 11 13 14 15 17 20 21 23 24 26 26 27 LCS_GDT V 3 V 3 4 8 18 3 3 4 6 8 10 10 11 11 13 15 17 19 20 21 23 24 26 26 27 LCS_GDT S 5 S 5 4 8 18 3 3 6 6 8 10 10 12 14 14 15 17 19 20 21 23 24 26 26 27 LCS_GDT Q 6 Q 6 5 8 18 5 5 6 6 8 10 10 12 14 14 15 16 19 20 21 23 24 26 27 28 LCS_GDT V 7 V 7 5 8 18 5 5 6 6 8 10 10 12 14 14 20 20 24 24 26 28 30 33 33 34 LCS_GDT I 8 I 8 5 8 18 5 5 6 6 8 10 10 13 14 14 20 24 25 26 29 31 31 33 33 34 LCS_GDT I 9 I 9 5 8 18 5 5 6 6 9 11 12 13 16 19 21 24 25 26 29 31 31 33 33 34 LCS_GDT N 10 N 10 5 8 18 3 5 6 6 8 10 11 13 14 18 21 22 25 26 29 31 31 33 33 34 LCS_GDT T 11 T 11 5 8 18 3 5 6 6 8 8 10 12 14 14 15 20 22 24 24 28 30 32 33 34 LCS_GDT S 12 S 12 4 7 18 3 5 6 6 7 8 10 12 14 14 15 17 19 20 21 24 25 26 29 30 LCS_GDT H 13 H 13 4 7 18 3 5 6 6 7 8 10 12 14 14 15 17 19 20 21 23 24 26 26 27 LCS_GDT M 14 M 14 4 7 18 3 3 4 6 6 8 10 12 13 14 15 17 19 20 21 23 24 26 26 27 LCS_GDT K 15 K 15 3 7 18 3 3 3 4 6 8 10 12 14 14 15 17 19 20 21 23 24 26 26 27 LCS_GDT G 16 G 16 3 7 18 3 3 3 6 7 8 10 12 14 14 15 17 19 20 21 23 24 26 26 27 LCS_GDT M 17 M 17 3 4 18 1 3 4 6 7 8 10 12 14 14 15 17 19 20 21 23 24 26 28 29 LCS_GDT K 18 K 18 3 3 18 0 5 6 6 6 8 10 11 13 14 14 20 22 24 24 27 30 31 33 33 LCS_GDT T 25 T 25 4 5 18 3 4 4 5 7 9 10 11 12 13 14 15 16 17 20 21 25 26 29 30 LCS_GDT G 26 G 26 4 5 18 3 4 4 5 5 9 10 11 12 13 14 17 19 19 21 23 24 26 27 30 LCS_GDT A 27 A 27 4 5 18 3 4 4 5 6 7 8 9 11 13 15 17 19 20 21 23 24 26 26 27 LCS_GDT Y 28 Y 28 4 5 15 3 4 4 5 5 7 8 9 11 12 15 17 19 20 21 23 24 26 26 27 LCS_GDT D 29 D 29 3 5 15 3 3 4 5 5 5 6 6 7 8 14 16 17 20 21 23 24 26 26 27 LCS_GDT T 94 T 94 4 10 24 2 4 6 9 10 10 10 12 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT T 95 T 95 4 10 24 3 4 6 9 10 10 10 12 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT V 96 V 96 5 10 24 3 4 6 9 10 10 10 12 16 19 22 24 25 26 29 31 31 33 33 34 LCS_GDT Y 97 Y 97 5 10 24 5 5 6 9 10 10 10 12 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT M 98 M 98 6 10 24 4 5 6 9 10 10 10 12 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT V 99 V 99 6 10 24 4 5 6 9 10 10 10 12 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT D 100 D 100 6 10 24 4 5 6 9 10 10 10 12 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT Y 101 Y 101 6 10 24 4 5 6 9 10 10 10 12 14 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT T 102 T 102 6 10 24 4 5 6 9 10 10 10 12 14 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT S 103 S 103 6 10 24 4 5 6 7 10 10 10 12 13 17 22 23 25 26 29 31 31 33 33 34 LCS_GDT T 104 T 104 3 8 24 3 3 4 6 7 8 10 12 13 15 17 23 23 25 27 28 29 33 33 34 LCS_GDT T 105 T 105 4 6 24 3 4 5 5 6 9 10 11 13 13 15 17 22 22 24 26 28 31 33 34 LCS_GDT S 106 S 106 4 7 24 3 4 5 6 7 10 10 12 14 20 22 23 25 26 29 31 31 33 33 34 LCS_GDT G 107 G 107 4 9 24 3 4 5 6 7 10 11 13 15 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT E 108 E 108 5 9 24 3 4 6 8 9 11 12 13 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT K 109 K 109 6 9 24 4 5 6 8 9 11 12 13 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT V 110 V 110 6 9 24 4 5 6 8 9 11 12 13 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT K 111 K 111 6 9 24 4 5 6 7 8 11 12 13 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT N 112 N 112 6 9 24 4 5 6 7 8 11 12 13 14 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT H 113 H 113 6 9 24 3 5 6 8 9 11 12 13 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT K 114 K 114 6 9 24 3 5 6 8 9 11 12 13 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT W 115 W 115 5 9 24 3 3 5 8 9 11 12 13 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT V 116 V 116 5 6 24 3 4 5 5 7 11 12 13 14 19 21 24 25 26 29 31 31 33 33 34 LCS_GDT T 117 T 117 5 6 24 3 5 5 8 9 11 12 13 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT E 118 E 118 5 6 21 3 4 6 6 6 7 10 13 14 15 20 24 25 26 29 31 31 33 33 34 LCS_GDT D 119 D 119 3 6 21 3 5 5 8 9 11 12 13 16 20 22 24 25 26 29 31 31 33 33 34 LCS_GDT E 120 E 120 5 6 19 3 5 6 6 7 8 10 12 14 14 17 18 22 25 29 31 31 33 33 34 LCS_GDT L 121 L 121 5 6 19 3 5 5 5 6 7 8 9 10 13 17 18 19 20 27 31 31 33 33 34 LCS_GDT S 122 S 122 5 6 19 3 5 5 5 6 7 8 9 9 13 17 18 19 20 26 31 31 33 33 34 LCS_GDT A 123 A 123 5 6 19 3 5 5 5 6 7 8 9 11 13 17 18 24 26 29 31 31 33 33 34 LCS_GDT K 124 K 124 5 6 19 1 5 5 5 6 7 8 9 9 10 13 14 17 18 20 20 21 26 30 32 LCS_AVERAGE LCS_A: 18.22 ( 7.70 12.48 34.47 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 5 6 9 10 11 12 13 16 20 22 24 25 26 29 31 31 33 33 34 GDT PERCENT_AT 8.33 8.33 10.00 15.00 16.67 18.33 20.00 21.67 26.67 33.33 36.67 40.00 41.67 43.33 48.33 51.67 51.67 55.00 55.00 56.67 GDT RMS_LOCAL 0.40 0.40 0.72 1.32 1.56 2.03 2.20 2.53 3.86 4.27 4.39 4.57 4.68 4.82 5.27 5.56 5.56 5.87 5.87 6.08 GDT RMS_ALL_AT 16.80 16.80 17.09 13.82 13.89 13.47 13.46 13.52 13.20 13.29 13.32 13.29 13.24 13.30 13.19 13.14 13.14 13.17 13.17 13.14 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 1 M 1 27.121 4 0.042 0.042 28.949 0.000 0.000 LGA K 2 K 2 25.143 5 0.303 0.303 25.574 0.000 0.000 LGA V 3 V 3 21.859 3 0.079 0.079 23.453 0.000 0.000 LGA S 5 S 5 19.934 2 0.064 0.064 20.240 0.000 0.000 LGA Q 6 Q 6 15.177 5 0.035 0.035 17.292 0.000 0.000 LGA V 7 V 7 9.274 3 0.075 0.075 11.006 3.929 2.245 LGA I 8 I 8 5.992 4 0.209 0.209 7.033 34.643 17.321 LGA I 9 I 9 2.484 4 0.052 0.052 6.251 44.048 22.024 LGA N 10 N 10 5.330 4 0.480 0.480 9.547 19.286 9.643 LGA T 11 T 11 10.051 3 0.285 0.285 11.515 1.786 1.020 LGA S 12 S 12 15.353 2 0.127 0.127 18.569 0.000 0.000 LGA H 13 H 13 22.073 6 0.574 0.574 23.816 0.000 0.000 LGA M 14 M 14 25.372 4 0.560 0.560 25.582 0.000 0.000 LGA K 15 K 15 26.604 5 0.303 0.303 26.604 0.000 0.000 LGA G 16 G 16 21.977 0 0.702 0.702 23.776 0.000 0.000 LGA M 17 M 17 14.708 4 0.661 0.661 17.447 0.000 0.000 LGA K 18 K 18 10.996 5 0.096 0.096 12.582 0.357 0.159 LGA T 25 T 25 13.524 3 0.553 0.553 16.924 0.000 0.000 LGA G 26 G 26 18.043 0 0.036 0.036 18.043 0.000 0.000 LGA A 27 A 27 19.975 1 0.147 0.147 24.629 0.000 0.000 LGA Y 28 Y 28 25.335 8 0.039 0.039 26.538 0.000 0.000 LGA D 29 D 29 30.592 4 0.218 0.218 34.051 0.000 0.000 LGA T 94 T 94 8.068 3 0.015 0.015 8.699 4.286 2.449 LGA T 95 T 95 8.473 3 0.114 0.114 8.473 4.762 2.721 LGA V 96 V 96 8.786 3 0.125 0.125 9.036 2.500 1.429 LGA Y 97 Y 97 8.551 8 0.209 0.209 8.551 4.405 1.468 LGA M 98 M 98 8.630 4 0.174 0.174 8.735 3.810 1.905 LGA V 99 V 99 8.108 3 0.050 0.050 8.271 4.762 2.721 LGA D 100 D 100 8.133 4 0.097 0.097 8.169 5.357 2.679 LGA Y 101 Y 101 8.305 8 0.031 0.031 8.445 4.762 1.587 LGA T 102 T 102 8.437 3 0.133 0.133 9.863 2.857 1.633 LGA S 103 S 103 9.657 2 0.177 0.177 9.691 1.310 0.873 LGA T 104 T 104 11.670 3 0.297 0.297 11.893 0.000 0.000 LGA T 105 T 105 13.467 3 0.347 0.347 13.467 0.000 0.000 LGA S 106 S 106 8.244 2 0.042 0.042 9.837 5.595 3.730 LGA G 107 G 107 5.355 0 0.480 0.480 6.287 32.500 32.500 LGA E 108 E 108 1.586 5 0.120 0.120 3.312 61.429 27.302 LGA K 109 K 109 0.521 5 0.094 0.094 1.480 90.595 40.265 LGA V 110 V 110 1.175 3 0.091 0.091 1.598 81.548 46.599 LGA K 111 K 111 2.594 5 0.089 0.089 2.594 64.881 28.836 LGA N 112 N 112 3.301 4 0.359 0.359 3.328 67.976 33.988 LGA H 113 H 113 2.933 6 0.237 0.237 3.099 61.429 24.571 LGA K 114 K 114 2.495 5 0.089 0.089 3.624 53.810 23.915 LGA W 115 W 115 3.111 10 0.133 0.133 5.114 42.619 12.177 LGA V 116 V 116 2.722 3 0.041 0.041 2.722 71.190 40.680 LGA T 117 T 117 1.307 3 0.175 0.175 3.768 65.595 37.483 LGA E 118 E 118 4.373 5 0.344 0.344 5.239 40.952 18.201 LGA D 119 D 119 1.535 4 0.600 0.600 2.622 66.905 33.452 LGA E 120 E 120 6.840 5 0.698 0.698 7.441 16.190 7.196 LGA L 121 L 121 7.713 4 0.071 0.071 7.713 10.119 5.060 LGA S 122 S 122 7.791 2 0.096 0.096 9.228 5.119 3.413 LGA A 123 A 123 7.472 1 0.428 0.428 8.641 6.905 5.524 LGA K 124 K 124 11.733 5 0.437 0.437 11.733 0.119 0.053 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 53 212 212 100.00 415 212 51.08 60 SUMMARY(RMSD_GDC): 12.650 12.677 12.677 16.472 8.280 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 53 60 4.0 13 2.53 24.167 21.469 0.495 LGA_LOCAL RMSD: 2.528 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.521 Number of assigned atoms: 53 Std_ASGN_ATOMS RMSD: 12.650 Standard rmsd on all 53 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.289177 * X + 0.954860 * Y + 0.067959 * Z + 8.597054 Y_new = 0.759543 * X + -0.185658 * Y + -0.623399 * Z + -7.823241 Z_new = -0.582642 * X + 0.231890 * Y + -0.778945 * Z + -13.826548 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.207016 0.621975 2.852250 [DEG: 69.1569 35.6366 163.4219 ] ZXZ: 0.108584 2.463778 -1.192017 [DEG: 6.2214 141.1641 -68.2976 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0579AL396_1-D1 REMARK 2: T0579-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0579AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 53 60 4.0 13 2.53 21.469 12.65 REMARK ---------------------------------------------------------- MOLECULE T0579AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2rqe_A ATOM 1 N MET 1 8.981 -6.815 -14.600 1.00 0.00 N ATOM 2 CA MET 1 9.119 -5.459 -14.078 1.00 0.00 C ATOM 3 C MET 1 8.657 -4.431 -15.106 1.00 0.00 C ATOM 4 O MET 1 8.914 -4.573 -16.301 1.00 0.00 O ATOM 5 N LYS 2 7.976 -3.393 -14.630 1.00 0.00 N ATOM 6 CA LYS 2 7.478 -2.340 -15.506 1.00 0.00 C ATOM 7 C LYS 2 7.606 -0.972 -14.841 1.00 0.00 C ATOM 8 O LYS 2 6.666 -0.485 -14.214 1.00 0.00 O ATOM 9 N VAL 3 8.777 -0.359 -14.982 1.00 0.00 N ATOM 10 CA VAL 3 9.028 0.952 -14.397 1.00 0.00 C ATOM 11 C VAL 3 9.031 0.881 -12.873 1.00 0.00 C ATOM 12 O VAL 3 8.234 0.171 -12.259 1.00 0.00 O ATOM 13 N SER 5 9.947 1.634 -12.247 1.00 0.00 N ATOM 14 CA SER 5 10.076 1.673 -10.787 1.00 0.00 C ATOM 15 C SER 5 8.899 2.377 -10.121 1.00 0.00 C ATOM 16 O SER 5 8.093 3.042 -10.772 1.00 0.00 O ATOM 17 N GLN 6 8.797 2.231 -8.792 1.00 0.00 N ATOM 18 CA GLN 6 7.722 2.847 -8.007 1.00 0.00 C ATOM 19 C GLN 6 7.858 4.363 -7.928 1.00 0.00 C ATOM 20 O GLN 6 8.944 4.886 -7.678 1.00 0.00 O ATOM 21 N VAL 7 6.751 5.065 -8.143 1.00 0.00 N ATOM 22 CA VAL 7 6.746 6.522 -8.094 1.00 0.00 C ATOM 23 C VAL 7 6.652 7.022 -6.656 1.00 0.00 C ATOM 24 O VAL 7 5.865 6.509 -5.859 1.00 0.00 O ATOM 25 N ILE 8 7.460 8.026 -6.329 1.00 0.00 N ATOM 26 CA ILE 8 7.468 8.593 -4.986 1.00 0.00 C ATOM 27 C ILE 8 6.572 9.825 -4.905 1.00 0.00 C ATOM 28 O ILE 8 7.055 10.958 -4.908 1.00 0.00 O ATOM 29 N ILE 9 5.266 9.596 -4.831 1.00 0.00 N ATOM 30 CA ILE 9 4.301 10.687 -4.747 1.00 0.00 C ATOM 31 C ILE 9 4.222 11.236 -3.326 1.00 0.00 C ATOM 32 O ILE 9 3.720 10.570 -2.421 1.00 0.00 O ATOM 33 N ASN 10 4.720 12.455 -3.139 1.00 0.00 N ATOM 34 CA ASN 10 4.703 13.093 -1.828 1.00 0.00 C ATOM 35 C ASN 10 3.329 13.684 -1.527 1.00 0.00 C ATOM 36 O ASN 10 2.347 13.373 -2.201 1.00 0.00 O ATOM 37 N THR 11 3.268 14.537 -0.510 1.00 0.00 N ATOM 38 CA THR 11 2.015 15.173 -0.121 1.00 0.00 C ATOM 39 C THR 11 2.213 16.663 0.135 1.00 0.00 C ATOM 40 O THR 11 2.332 17.095 1.282 1.00 0.00 O ATOM 41 N SER 12 2.246 17.444 -0.940 1.00 0.00 N ATOM 42 CA SER 12 2.429 18.886 -0.830 1.00 0.00 C ATOM 43 C SER 12 1.189 19.554 -0.247 1.00 0.00 C ATOM 44 O SER 12 0.153 18.913 -0.062 1.00 0.00 O ATOM 45 N HIS 13 1.300 20.847 0.041 1.00 0.00 N ATOM 46 CA HIS 13 0.186 21.604 0.603 1.00 0.00 C ATOM 47 C HIS 13 -1.061 21.460 -0.265 1.00 0.00 C ATOM 48 O HIS 13 -1.023 20.896 -1.359 1.00 0.00 O ATOM 49 N MET 14 -2.192 21.982 0.233 1.00 0.00 N ATOM 50 CA MET 14 -3.470 21.923 -0.482 1.00 0.00 C ATOM 51 C MET 14 -3.487 22.817 -1.717 1.00 0.00 C ATOM 52 O MET 14 -4.550 23.180 -2.221 1.00 0.00 O ATOM 53 N LYS 15 -2.301 23.170 -2.201 1.00 0.00 N ATOM 54 CA LYS 15 -2.177 24.020 -3.380 1.00 0.00 C ATOM 55 C LYS 15 -1.278 23.371 -4.427 1.00 0.00 C ATOM 56 O LYS 15 -0.694 24.053 -5.268 1.00 0.00 O ATOM 57 N GLY 16 -1.173 22.047 -4.371 1.00 0.00 N ATOM 58 CA GLY 16 -0.345 21.327 -5.322 1.00 0.00 C ATOM 59 C GLY 16 0.157 20.008 -4.771 1.00 0.00 C ATOM 60 O GLY 16 -0.168 19.633 -3.643 1.00 0.00 O ATOM 61 N MET 17 0.950 19.299 -5.567 1.00 0.00 N ATOM 62 CA MET 17 1.497 18.011 -5.154 1.00 0.00 C ATOM 63 C MET 17 2.844 17.753 -5.821 1.00 0.00 C ATOM 64 O MET 17 3.202 18.411 -6.797 1.00 0.00 O ATOM 65 N LYS 18 3.587 16.788 -5.287 1.00 0.00 N ATOM 66 CA LYS 18 4.895 16.442 -5.830 1.00 0.00 C ATOM 67 C LYS 18 4.988 14.945 -6.111 1.00 0.00 C ATOM 68 O LYS 18 4.541 14.123 -5.310 1.00 0.00 O ATOM 69 N THR 25 5.572 14.597 -7.253 1.00 0.00 N ATOM 70 CA THR 25 5.724 13.199 -7.640 1.00 0.00 C ATOM 71 C THR 25 7.022 12.980 -8.406 1.00 0.00 C ATOM 72 O THR 25 7.155 13.397 -9.557 1.00 0.00 O ATOM 73 N GLY 26 7.981 12.322 -7.761 1.00 0.00 N ATOM 74 CA GLY 26 9.271 12.049 -8.381 1.00 0.00 C ATOM 75 C GLY 26 9.556 10.550 -8.409 1.00 0.00 C ATOM 76 O GLY 26 9.013 9.789 -7.608 1.00 0.00 O ATOM 77 N ALA 27 10.412 10.133 -9.335 1.00 0.00 N ATOM 78 CA ALA 27 10.771 8.726 -9.467 1.00 0.00 C ATOM 79 C ALA 27 12.250 8.564 -9.796 1.00 0.00 C ATOM 80 O ALA 27 12.870 9.425 -10.423 1.00 0.00 O ATOM 81 N TYR 28 12.833 7.435 -9.366 1.00 0.00 N ATOM 82 CA TYR 28 14.247 7.133 -9.604 1.00 0.00 C ATOM 83 C TYR 28 14.537 6.838 -11.072 1.00 0.00 C ATOM 84 O TYR 28 13.951 5.930 -11.660 1.00 0.00 O ATOM 85 N ASP 29 15.446 7.612 -11.657 1.00 0.00 N ATOM 86 CA ASP 29 15.815 7.433 -13.056 1.00 0.00 C ATOM 87 C ASP 29 16.872 6.343 -13.204 1.00 0.00 C ATOM 88 O ASP 29 17.898 6.364 -12.524 1.00 0.00 O ATOM 285 N THR 94 -5.376 9.283 -1.106 1.00 0.00 N ATOM 286 CA THR 94 -4.904 8.182 -1.936 1.00 0.00 C ATOM 287 C THR 94 -4.882 8.581 -3.408 1.00 0.00 C ATOM 288 O THR 94 -5.558 9.526 -3.815 1.00 0.00 O ATOM 289 N THR 95 -4.102 7.854 -4.202 1.00 0.00 N ATOM 290 CA THR 95 -3.995 8.132 -5.629 1.00 0.00 C ATOM 291 C THR 95 -4.093 6.849 -6.447 1.00 0.00 C ATOM 292 O THR 95 -3.670 5.782 -6.001 1.00 0.00 O ATOM 293 N VAL 96 -4.651 6.961 -7.647 1.00 0.00 N ATOM 294 CA VAL 96 -4.804 5.810 -8.529 1.00 0.00 C ATOM 295 C VAL 96 -4.696 6.226 -9.993 1.00 0.00 C ATOM 296 O VAL 96 -5.617 6.823 -10.551 1.00 0.00 O ATOM 297 N TYR 97 -3.563 5.904 -10.610 1.00 0.00 N ATOM 298 CA TYR 97 -3.332 6.245 -12.009 1.00 0.00 C ATOM 299 C TYR 97 -2.170 5.437 -12.580 1.00 0.00 C ATOM 300 O TYR 97 -1.807 4.389 -12.045 1.00 0.00 O ATOM 301 N MET 98 -1.593 5.932 -13.668 1.00 0.00 N ATOM 302 CA MET 98 -0.472 5.256 -14.313 1.00 0.00 C ATOM 303 C MET 98 0.507 6.265 -14.900 1.00 0.00 C ATOM 304 O MET 98 0.210 7.457 -14.987 1.00 0.00 O ATOM 305 N VAL 99 1.678 5.782 -15.304 1.00 0.00 N ATOM 306 CA VAL 99 2.703 6.643 -15.883 1.00 0.00 C ATOM 307 C VAL 99 3.395 5.960 -17.057 1.00 0.00 C ATOM 308 O VAL 99 3.552 4.739 -17.072 1.00 0.00 O ATOM 309 N ASP 100 3.810 6.756 -18.036 1.00 0.00 N ATOM 310 CA ASP 100 4.487 6.228 -19.216 1.00 0.00 C ATOM 311 C ASP 100 5.942 6.684 -19.257 1.00 0.00 C ATOM 312 O ASP 100 6.257 7.824 -18.917 1.00 0.00 O ATOM 313 N TYR 101 6.826 5.786 -19.677 1.00 0.00 N ATOM 314 CA TYR 101 8.248 6.095 -19.764 1.00 0.00 C ATOM 315 C TYR 101 8.863 5.498 -21.025 1.00 0.00 C ATOM 316 O TYR 101 8.224 4.719 -21.731 1.00 0.00 O ATOM 317 N THR 102 10.110 5.868 -21.300 1.00 0.00 N ATOM 318 CA THR 102 10.813 5.368 -22.475 1.00 0.00 C ATOM 319 C THR 102 12.317 5.299 -22.229 1.00 0.00 C ATOM 320 O THR 102 13.027 6.294 -22.378 1.00 0.00 O ATOM 321 N SER 103 12.796 4.118 -21.852 1.00 0.00 N ATOM 322 CA SER 103 14.215 3.917 -21.587 1.00 0.00 C ATOM 323 C SER 103 14.831 2.974 -22.615 1.00 0.00 C ATOM 324 O SER 103 14.252 1.941 -22.950 1.00 0.00 O ATOM 325 N THR 104 16.010 3.335 -23.110 1.00 0.00 N ATOM 326 CA THR 104 16.706 2.519 -24.098 1.00 0.00 C ATOM 327 C THR 104 15.767 2.117 -25.231 1.00 0.00 C ATOM 328 O THR 104 15.889 1.031 -25.796 1.00 0.00 O ATOM 329 N THR 105 14.829 3.001 -25.557 1.00 0.00 N ATOM 330 CA THR 105 13.881 2.719 -26.619 1.00 0.00 C ATOM 331 C THR 105 13.090 1.451 -26.370 1.00 0.00 C ATOM 332 O THR 105 12.700 0.758 -27.311 1.00 0.00 O ATOM 333 N SER 106 12.855 1.142 -25.100 1.00 0.00 N ATOM 334 CA SER 106 12.107 -0.054 -24.729 1.00 0.00 C ATOM 335 C SER 106 10.633 0.271 -24.510 1.00 0.00 C ATOM 336 O SER 106 9.756 -0.313 -25.145 1.00 0.00 O ATOM 337 N GLY 107 10.367 1.211 -23.607 1.00 0.00 N ATOM 338 CA GLY 107 8.999 1.600 -23.322 1.00 0.00 C ATOM 339 C GLY 107 8.431 0.881 -22.114 1.00 0.00 C ATOM 340 O GLY 107 8.248 -0.337 -22.136 1.00 0.00 O ATOM 341 N GLU 108 8.154 1.634 -21.055 1.00 0.00 N ATOM 342 CA GLU 108 7.608 1.060 -19.831 1.00 0.00 C ATOM 343 C GLU 108 6.430 1.885 -19.322 1.00 0.00 C ATOM 344 O GLU 108 6.159 2.976 -19.822 1.00 0.00 O ATOM 345 N LYS 109 5.732 1.354 -18.323 1.00 0.00 N ATOM 346 CA LYS 109 4.582 2.038 -17.745 1.00 0.00 C ATOM 347 C LYS 109 4.105 1.328 -16.482 1.00 0.00 C ATOM 348 O LYS 109 4.042 0.100 -16.436 1.00 0.00 O ATOM 349 N VAL 110 3.772 2.109 -15.459 1.00 0.00 N ATOM 350 CA VAL 110 3.303 1.554 -14.196 1.00 0.00 C ATOM 351 C VAL 110 1.800 1.300 -14.238 1.00 0.00 C ATOM 352 O VAL 110 1.067 1.971 -14.965 1.00 0.00 O ATOM 353 N LYS 111 1.347 0.326 -13.456 1.00 0.00 N ATOM 354 CA LYS 111 -0.070 -0.016 -13.404 1.00 0.00 C ATOM 355 C LYS 111 -0.534 -0.188 -11.961 1.00 0.00 C ATOM 356 O LYS 111 0.161 0.205 -11.024 1.00 0.00 O ATOM 357 N ASN 112 -1.715 -0.773 -11.790 1.00 0.00 N ATOM 358 CA ASN 112 -2.273 -0.995 -10.461 1.00 0.00 C ATOM 359 C ASN 112 -2.974 0.260 -9.950 1.00 0.00 C ATOM 360 O ASN 112 -4.005 0.180 -9.283 1.00 0.00 O ATOM 361 N HIS 113 -2.407 1.420 -10.268 1.00 0.00 N ATOM 362 CA HIS 113 -2.991 2.675 -9.834 1.00 0.00 C ATOM 363 C HIS 113 -3.448 2.633 -8.390 1.00 0.00 C ATOM 364 O HIS 113 -4.632 2.448 -8.112 1.00 0.00 O ATOM 365 N LYS 114 -2.506 2.803 -7.467 1.00 0.00 N ATOM 366 CA LYS 114 -2.820 2.780 -6.043 1.00 0.00 C ATOM 367 C LYS 114 -1.634 3.270 -5.216 1.00 0.00 C ATOM 368 O LYS 114 -0.588 2.623 -5.169 1.00 0.00 O ATOM 369 N TRP 115 -1.805 4.416 -4.567 1.00 0.00 N ATOM 370 CA TRP 115 -0.750 4.993 -3.744 1.00 0.00 C ATOM 371 C TRP 115 -1.338 5.824 -2.608 1.00 0.00 C ATOM 372 O TRP 115 -2.079 6.779 -2.843 1.00 0.00 O ATOM 373 N VAL 116 -1.003 5.454 -1.375 1.00 0.00 N ATOM 374 CA VAL 116 -1.499 6.165 -0.204 1.00 0.00 C ATOM 375 C VAL 116 -0.523 7.251 0.235 1.00 0.00 C ATOM 376 O VAL 116 0.684 7.022 0.308 1.00 0.00 O ATOM 377 N THR 117 -1.053 8.434 0.526 1.00 0.00 N ATOM 378 CA THR 117 -0.229 9.556 0.959 1.00 0.00 C ATOM 379 C THR 117 0.454 9.255 2.288 1.00 0.00 C ATOM 380 O THR 117 -0.206 8.983 3.290 1.00 0.00 O ATOM 381 N GLU 118 1.784 9.304 2.287 1.00 0.00 N ATOM 382 CA GLU 118 2.557 9.036 3.494 1.00 0.00 C ATOM 383 C GLU 118 3.832 9.874 3.521 1.00 0.00 C ATOM 384 O GLU 118 4.868 9.434 4.018 1.00 0.00 O ATOM 385 N ASP 119 3.748 11.086 2.980 1.00 0.00 N ATOM 386 CA ASP 119 4.901 11.967 2.951 1.00 0.00 C ATOM 387 C ASP 119 4.522 13.411 2.688 1.00 0.00 C ATOM 388 O ASP 119 3.849 13.714 1.701 1.00 0.00 O ATOM 389 N GLU 120 4.950 14.304 3.572 1.00 0.00 N ATOM 390 CA GLU 120 4.649 15.724 3.432 1.00 0.00 C ATOM 391 C GLU 120 5.788 16.455 2.726 1.00 0.00 C ATOM 392 O GLU 120 6.900 15.938 2.619 1.00 0.00 O ATOM 393 N LEU 121 5.503 17.662 2.247 1.00 0.00 N ATOM 394 CA LEU 121 6.502 18.465 1.553 1.00 0.00 C ATOM 395 C LEU 121 6.058 19.920 1.443 1.00 0.00 C ATOM 396 O LEU 121 4.898 20.245 1.692 1.00 0.00 O ATOM 397 N SER 122 6.990 20.789 1.070 1.00 0.00 N ATOM 398 CA SER 122 6.696 22.210 0.927 1.00 0.00 C ATOM 399 C SER 122 7.105 22.713 -0.454 1.00 0.00 C ATOM 400 O SER 122 8.224 22.472 -0.907 1.00 0.00 O ATOM 401 N ALA 123 6.190 23.411 -1.120 1.00 0.00 N ATOM 402 CA ALA 123 6.455 23.944 -2.450 1.00 0.00 C ATOM 403 C ALA 123 7.345 25.182 -2.372 1.00 0.00 C ATOM 404 O ALA 123 6.978 26.255 -2.849 1.00 0.00 O ATOM 405 N LYS 124 8.517 25.023 -1.766 1.00 0.00 N ATOM 406 CA LYS 124 9.461 26.125 -1.627 1.00 0.00 C ATOM 407 C LYS 124 10.865 25.703 -2.044 1.00 0.00 C ATOM 408 O LYS 124 11.044 25.017 -3.052 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 212 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 73.69 38.5 39 33.1 118 ARMSMC SECONDARY STRUCTURE . . 41.21 60.0 15 22.7 66 ARMSMC SURFACE . . . . . . . . 65.71 40.7 27 33.8 80 ARMSMC BURIED . . . . . . . . 89.07 33.3 12 31.6 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 51 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 44 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 25 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 18 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.65 (Number of atoms: 53) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.65 53 88.3 60 CRMSCA CRN = ALL/NP . . . . . 0.2387 CRMSCA SECONDARY STRUCTURE . . 10.30 29 87.9 33 CRMSCA SURFACE . . . . . . . . 13.67 37 90.2 41 CRMSCA BURIED . . . . . . . . 9.91 16 84.2 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.68 212 71.9 295 CRMSMC SECONDARY STRUCTURE . . 10.50 116 70.7 164 CRMSMC SURFACE . . . . . . . . 13.73 148 73.3 202 CRMSMC BURIED . . . . . . . . 9.83 64 68.8 93 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 671 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 641 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 396 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 467 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 204 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.68 212 23.3 911 CRMSALL SECONDARY STRUCTURE . . 10.50 116 22.0 528 CRMSALL SURFACE . . . . . . . . 13.73 148 23.5 631 CRMSALL BURIED . . . . . . . . 9.83 64 22.9 280 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.476 1.000 0.500 53 88.3 60 ERRCA SECONDARY STRUCTURE . . 9.613 1.000 0.500 29 87.9 33 ERRCA SURFACE . . . . . . . . 12.468 1.000 0.500 37 90.2 41 ERRCA BURIED . . . . . . . . 9.181 1.000 0.500 16 84.2 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.545 1.000 0.500 212 71.9 295 ERRMC SECONDARY STRUCTURE . . 9.800 1.000 0.500 116 70.7 164 ERRMC SURFACE . . . . . . . . 12.571 1.000 0.500 148 73.3 202 ERRMC BURIED . . . . . . . . 9.174 1.000 0.500 64 68.8 93 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 671 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 641 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 396 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 467 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 204 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.545 1.000 0.500 212 23.3 911 ERRALL SECONDARY STRUCTURE . . 9.800 1.000 0.500 116 22.0 528 ERRALL SURFACE . . . . . . . . 12.571 1.000 0.500 148 23.5 631 ERRALL BURIED . . . . . . . . 9.174 1.000 0.500 64 22.9 280 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 2 26 53 60 DISTCA CA (P) 0.00 0.00 0.00 3.33 43.33 60 DISTCA CA (RMS) 0.00 0.00 0.00 4.07 7.22 DISTCA ALL (N) 0 0 0 10 104 212 911 DISTALL ALL (P) 0.00 0.00 0.00 1.10 11.42 911 DISTALL ALL (RMS) 0.00 0.00 0.00 4.17 7.42 DISTALL END of the results output