####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 102 ( 408), selected 102 , name T0579AL396_1 # Molecule2: number of CA atoms 124 ( 1877), selected 102 , name T0579.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0579AL396_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 93 - 117 4.87 23.44 LCS_AVERAGE: 14.92 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 31 - 41 1.91 22.84 LONGEST_CONTINUOUS_SEGMENT: 11 93 - 103 1.83 23.23 LCS_AVERAGE: 6.35 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 98 - 103 0.78 23.69 LONGEST_CONTINUOUS_SEGMENT: 6 109 - 114 0.72 24.07 LCS_AVERAGE: 3.53 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 102 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 1 M 1 3 5 13 3 3 3 4 5 5 5 6 8 9 13 16 16 19 21 24 26 27 28 32 LCS_GDT K 2 K 2 3 5 16 3 3 3 4 6 6 7 10 12 15 16 17 18 20 23 23 25 26 30 34 LCS_GDT V 3 V 3 4 8 18 3 3 4 6 8 9 11 12 12 15 16 17 19 20 23 24 25 28 30 34 LCS_GDT S 5 S 5 4 8 18 3 3 6 6 8 9 11 12 14 15 16 17 19 20 23 23 25 28 30 31 LCS_GDT Q 6 Q 6 5 8 18 5 5 6 6 8 9 11 12 14 15 16 18 19 20 23 23 25 28 30 35 LCS_GDT V 7 V 7 5 8 18 5 5 6 6 8 9 11 12 14 15 19 22 24 25 26 29 29 34 34 35 LCS_GDT I 8 I 8 5 8 18 5 5 6 6 8 9 11 13 14 16 19 22 25 27 29 31 32 34 34 35 LCS_GDT I 9 I 9 5 8 18 5 5 6 6 8 11 12 13 14 19 22 24 26 27 29 31 32 34 34 35 LCS_GDT N 10 N 10 5 8 18 3 5 6 6 8 9 11 13 14 19 21 22 25 27 29 31 32 34 34 35 LCS_GDT T 11 T 11 5 8 18 3 5 6 6 8 8 11 12 14 15 16 22 23 25 26 28 31 32 33 34 LCS_GDT S 12 S 12 4 7 18 3 5 6 6 7 8 10 12 14 14 16 17 19 20 23 24 26 28 30 34 LCS_GDT H 13 H 13 4 7 18 3 5 6 6 7 8 10 12 14 14 15 17 19 20 23 23 26 28 30 34 LCS_GDT M 14 M 14 4 7 18 3 4 4 6 6 8 10 12 13 14 15 17 19 20 23 23 26 28 30 34 LCS_GDT K 15 K 15 3 7 18 3 4 4 4 6 8 10 12 14 14 15 17 19 20 23 24 26 28 30 34 LCS_GDT G 16 G 16 3 7 18 3 3 3 6 7 8 10 12 14 14 15 17 19 20 23 24 25 26 30 33 LCS_GDT M 17 M 17 3 4 18 1 3 4 6 7 8 10 12 14 14 15 17 19 20 23 24 26 28 30 34 LCS_GDT K 18 K 18 3 3 18 0 5 6 6 6 8 10 11 13 14 14 22 23 25 26 27 29 31 33 34 LCS_GDT T 25 T 25 4 9 18 3 4 5 6 8 9 10 11 12 13 13 14 15 17 20 21 25 28 30 35 LCS_GDT G 26 G 26 4 9 18 3 4 5 6 8 9 10 11 12 13 14 17 19 19 23 23 25 28 30 35 LCS_GDT A 27 A 27 4 9 18 3 4 5 6 8 9 9 10 11 13 15 17 19 20 23 24 25 28 31 35 LCS_GDT Y 28 Y 28 4 9 16 3 4 5 6 8 9 9 10 11 12 15 17 19 20 23 25 26 29 31 34 LCS_GDT D 29 D 29 4 9 16 3 4 5 6 8 9 9 10 11 12 14 16 17 20 23 25 26 29 31 34 LCS_GDT T 30 T 30 4 9 16 3 4 5 6 10 11 12 13 13 16 19 19 19 20 22 25 26 29 31 34 LCS_GDT T 31 T 31 4 11 16 3 4 5 8 10 11 12 13 13 15 19 19 19 21 22 25 27 30 31 34 LCS_GDT A 32 A 32 4 11 16 3 4 4 8 10 11 12 13 13 16 19 19 19 21 23 25 28 30 31 33 LCS_GDT Y 33 Y 33 5 11 16 3 4 5 6 10 11 12 12 12 15 16 18 20 21 24 26 28 30 31 34 LCS_GDT V 34 V 34 5 11 16 4 4 5 8 10 11 12 12 12 15 16 18 20 21 24 26 28 30 32 34 LCS_GDT V 35 V 35 5 11 16 4 4 5 8 10 11 12 13 13 16 19 19 20 21 24 26 28 30 32 34 LCS_GDT S 36 S 36 5 11 16 4 4 5 8 10 11 12 13 13 16 19 19 20 21 24 26 28 30 32 34 LCS_GDT Y 37 Y 37 5 11 16 4 4 5 8 10 11 12 12 12 15 19 19 20 21 24 26 28 30 32 34 LCS_GDT T 38 T 38 5 11 16 3 4 5 8 10 11 12 12 12 15 16 18 20 21 24 26 28 30 31 34 LCS_GDT P 39 P 39 3 11 16 3 3 4 7 10 11 12 12 13 15 16 18 20 21 24 26 28 30 32 34 LCS_GDT T 40 T 40 3 11 16 0 3 4 8 10 11 12 12 13 15 16 18 20 21 24 26 28 30 32 34 LCS_GDT N 41 N 41 3 11 16 3 3 5 8 10 11 12 12 13 14 16 18 20 21 24 26 28 30 32 34 LCS_GDT G 42 G 42 4 8 16 3 3 5 7 8 9 11 11 13 14 16 18 20 21 24 26 28 30 32 34 LCS_GDT G 43 G 43 4 8 16 3 3 5 7 8 9 11 11 13 14 16 18 20 21 24 26 28 30 32 34 LCS_GDT Q 44 Q 44 4 8 16 3 4 5 7 8 9 11 11 13 14 16 18 20 21 24 26 28 30 32 34 LCS_GDT R 45 R 45 4 8 16 3 4 5 6 8 9 11 11 13 14 16 18 20 21 24 26 28 30 32 34 LCS_GDT V 46 V 46 4 8 16 3 4 5 7 8 9 11 11 13 14 16 18 19 21 24 26 28 30 32 35 LCS_GDT D 47 D 47 4 8 16 3 4 5 7 8 9 11 11 13 14 16 18 19 21 24 26 28 30 32 35 LCS_GDT H 48 H 48 4 8 16 3 4 5 7 7 9 11 11 13 14 16 18 19 21 24 26 28 30 32 34 LCS_GDT H 49 H 49 4 8 16 3 4 5 7 7 9 11 11 13 14 16 18 19 21 24 26 28 30 32 35 LCS_GDT K 50 K 50 4 8 16 3 4 5 7 7 8 9 10 12 14 16 18 19 21 23 26 28 30 32 35 LCS_GDT W 51 W 51 4 8 16 3 4 4 5 6 9 10 11 12 15 15 17 18 21 22 24 27 29 32 35 LCS_GDT V 52 V 52 3 8 16 3 4 4 7 7 9 11 12 12 15 16 17 18 19 21 22 27 29 32 35 LCS_GDT I 53 I 53 3 8 16 3 3 4 7 7 8 9 9 10 12 15 16 18 19 21 22 25 28 32 35 LCS_GDT Q 54 Q 54 3 5 16 3 3 3 4 5 6 8 9 10 12 13 16 17 19 20 21 25 28 32 35 LCS_GDT E 55 E 55 3 5 16 0 3 4 4 5 6 8 10 11 13 15 18 18 21 23 25 28 30 32 35 LCS_GDT E 56 E 56 4 5 16 3 4 5 5 7 9 10 11 13 14 16 18 19 21 24 26 28 30 32 34 LCS_GDT I 57 I 57 4 5 15 3 4 5 6 8 9 10 13 14 16 19 19 20 21 24 26 28 30 31 34 LCS_GDT K 58 K 58 4 5 15 3 4 5 6 8 9 10 13 14 16 19 19 19 20 22 25 26 29 31 34 LCS_GDT D 59 D 59 4 6 15 3 5 6 6 8 9 10 13 14 16 19 19 19 20 22 25 26 29 31 34 LCS_GDT A 60 A 60 4 6 15 1 5 6 6 8 9 10 13 14 16 19 19 20 21 24 26 28 30 32 34 LCS_GDT G 61 G 61 4 6 15 3 4 4 4 6 7 9 12 14 16 19 19 20 21 24 26 28 30 32 34 LCS_GDT D 62 D 62 4 6 15 3 4 4 4 8 8 9 12 14 16 19 19 20 21 24 26 28 30 32 34 LCS_GDT K 63 K 63 5 6 15 3 4 6 6 8 9 10 13 14 16 19 19 20 21 24 26 28 30 32 34 LCS_GDT T 64 T 64 5 6 15 3 4 5 6 8 8 9 13 14 16 19 19 20 21 23 26 28 30 32 34 LCS_GDT L 65 L 65 5 6 15 3 4 5 6 8 8 9 13 14 16 19 19 20 21 24 26 28 30 32 34 LCS_GDT Q 66 Q 66 5 6 15 3 4 5 6 8 8 9 13 13 16 19 19 19 20 22 25 28 30 32 34 LCS_GDT P 67 P 67 5 6 15 3 4 5 6 8 8 9 13 13 16 19 19 19 20 22 25 26 29 31 34 LCS_GDT G 68 G 68 4 6 15 3 4 5 6 8 8 9 13 13 16 19 19 19 20 22 25 26 29 31 34 LCS_GDT D 69 D 69 4 6 15 3 4 5 6 6 8 9 11 12 13 19 19 19 20 22 25 26 28 31 34 LCS_GDT Q 70 Q 70 4 6 15 3 4 5 6 6 8 9 11 12 12 13 14 16 18 21 25 27 29 31 34 LCS_GDT V 71 V 71 4 6 14 3 4 5 6 6 8 9 11 12 12 13 14 15 16 19 23 27 29 30 32 LCS_GDT I 72 I 72 4 6 14 3 4 4 5 6 8 9 11 12 12 13 14 16 20 22 25 28 30 32 34 LCS_GDT L 73 L 73 4 6 14 3 4 4 6 6 8 9 11 12 12 13 14 17 21 22 24 27 29 32 34 LCS_GDT E 74 E 74 4 6 14 3 4 4 5 6 8 9 11 12 12 13 14 17 21 22 24 27 29 32 34 LCS_GDT A 75 A 75 3 6 14 3 3 4 5 6 8 9 10 12 12 13 14 17 21 22 24 27 29 30 30 LCS_GDT S 76 S 76 3 6 14 3 3 3 4 6 8 9 11 12 12 13 14 15 16 19 19 21 25 26 30 LCS_GDT H 77 H 77 3 6 14 0 4 4 4 6 6 9 11 12 12 13 14 15 16 19 19 21 21 27 30 LCS_GDT K 93 K 93 5 11 25 3 3 5 5 6 11 11 12 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT T 94 T 94 5 11 25 3 4 6 9 10 11 11 12 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT T 95 T 95 5 11 25 3 4 6 9 10 11 11 12 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT V 96 V 96 5 11 25 3 4 6 9 10 11 11 12 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT Y 97 Y 97 5 11 25 5 5 6 9 10 11 11 12 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT M 98 M 98 6 11 25 4 5 6 9 10 11 11 12 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT V 99 V 99 6 11 25 4 5 6 9 10 11 11 12 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT D 100 D 100 6 11 25 4 5 6 9 10 11 11 12 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT Y 101 Y 101 6 11 25 4 5 6 9 10 11 11 12 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT T 102 T 102 6 11 25 4 5 6 9 10 11 11 12 17 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT S 103 S 103 6 11 25 4 5 6 7 10 11 11 12 14 18 22 23 26 27 29 31 32 34 34 35 LCS_GDT T 104 T 104 3 8 25 3 3 4 6 7 8 10 12 13 14 18 22 24 26 28 29 30 34 34 35 LCS_GDT T 105 T 105 4 6 25 3 4 5 5 6 9 10 11 13 13 15 17 23 23 25 27 28 31 34 35 LCS_GDT S 106 S 106 4 7 25 3 4 5 6 7 10 11 12 15 21 22 24 26 27 29 30 32 34 34 35 LCS_GDT G 107 G 107 4 9 25 3 4 5 6 7 10 11 13 17 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT E 108 E 108 5 9 25 3 4 6 7 8 11 12 13 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT K 109 K 109 6 9 25 4 5 6 7 8 11 12 13 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT V 110 V 110 6 9 25 4 5 6 7 8 11 12 13 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT K 111 K 111 6 9 25 4 5 6 7 8 11 12 13 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT N 112 N 112 6 9 25 4 5 6 7 8 11 12 13 15 20 22 24 26 27 29 31 32 34 34 35 LCS_GDT H 113 H 113 6 9 25 3 5 6 6 8 11 12 13 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT K 114 K 114 6 9 25 3 5 6 7 8 11 12 13 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT W 115 W 115 5 9 25 3 3 5 7 8 11 12 13 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT V 116 V 116 5 6 25 3 4 5 5 7 11 12 13 14 15 22 24 26 27 29 31 32 34 34 35 LCS_GDT T 117 T 117 5 6 25 3 4 5 6 8 11 12 13 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT E 118 E 118 5 6 21 3 5 6 6 8 9 10 13 14 16 19 24 26 27 29 31 32 34 34 35 LCS_GDT D 119 D 119 3 6 21 3 3 5 5 8 10 12 13 18 21 22 24 26 27 29 31 32 34 34 35 LCS_GDT E 120 E 120 5 6 19 3 5 6 6 7 8 10 12 14 14 17 18 23 27 29 31 32 34 34 35 LCS_GDT L 121 L 121 5 6 19 3 5 5 5 6 7 8 9 10 13 17 18 19 20 29 31 32 34 34 35 LCS_GDT S 122 S 122 5 6 19 3 5 5 5 6 7 8 9 10 13 17 18 19 20 21 31 32 34 34 35 LCS_GDT A 123 A 123 5 6 19 3 5 5 5 6 7 8 9 11 13 17 18 21 27 29 31 32 34 34 35 LCS_GDT K 124 K 124 5 6 19 1 5 5 6 6 7 9 10 11 11 13 14 17 18 20 20 22 27 31 33 LCS_AVERAGE LCS_A: 8.26 ( 3.53 6.35 14.92 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 5 6 9 10 11 12 13 18 21 22 24 26 27 29 31 32 34 34 35 GDT PERCENT_AT 4.03 4.03 4.84 7.26 8.06 8.87 9.68 10.48 14.52 16.94 17.74 19.35 20.97 21.77 23.39 25.00 25.81 27.42 27.42 28.23 GDT RMS_LOCAL 0.40 0.40 0.72 1.32 1.56 1.83 2.12 2.53 3.89 4.21 4.23 4.49 4.73 4.85 5.13 5.46 5.57 5.87 5.87 6.12 GDT RMS_ALL_AT 21.85 21.85 24.07 23.77 23.69 23.23 22.54 25.65 23.81 23.72 23.97 24.22 24.15 24.25 24.28 24.24 24.22 24.24 24.24 24.22 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 1 M 1 27.121 4 0.042 0.042 28.949 0.000 0.000 LGA K 2 K 2 25.143 5 0.303 0.303 25.574 0.000 0.000 LGA V 3 V 3 21.859 3 0.079 0.079 23.453 0.000 0.000 LGA S 5 S 5 19.934 2 0.064 0.064 20.240 0.000 0.000 LGA Q 6 Q 6 15.177 5 0.035 0.035 17.292 0.000 0.000 LGA V 7 V 7 9.274 3 0.075 0.075 11.006 3.929 2.245 LGA I 8 I 8 5.992 4 0.209 0.209 7.033 34.643 17.321 LGA I 9 I 9 2.484 4 0.052 0.052 6.251 44.048 22.024 LGA N 10 N 10 5.330 4 0.480 0.480 9.547 19.286 9.643 LGA T 11 T 11 10.051 3 0.285 0.285 11.515 1.786 1.020 LGA S 12 S 12 15.353 2 0.127 0.127 18.569 0.000 0.000 LGA H 13 H 13 22.073 6 0.574 0.574 23.816 0.000 0.000 LGA M 14 M 14 25.372 4 0.560 0.560 25.582 0.000 0.000 LGA K 15 K 15 26.604 5 0.303 0.303 26.604 0.000 0.000 LGA G 16 G 16 21.977 0 0.702 0.702 23.776 0.000 0.000 LGA M 17 M 17 14.708 4 0.661 0.661 17.447 0.000 0.000 LGA K 18 K 18 10.996 5 0.096 0.096 12.582 0.357 0.159 LGA T 25 T 25 13.524 3 0.553 0.553 16.924 0.000 0.000 LGA G 26 G 26 18.043 0 0.036 0.036 18.043 0.000 0.000 LGA A 27 A 27 19.975 1 0.147 0.147 24.629 0.000 0.000 LGA Y 28 Y 28 25.335 8 0.039 0.039 26.538 0.000 0.000 LGA D 29 D 29 30.592 4 0.218 0.218 34.051 0.000 0.000 LGA T 30 T 30 33.335 3 0.673 0.673 34.346 0.000 0.000 LGA T 31 T 31 36.479 3 0.447 0.447 36.479 0.000 0.000 LGA A 32 A 32 32.298 1 0.034 0.034 35.110 0.000 0.000 LGA Y 33 Y 33 35.686 8 0.655 0.655 35.686 0.000 0.000 LGA V 34 V 34 33.514 3 0.097 0.097 34.049 0.000 0.000 LGA V 35 V 35 32.449 3 0.029 0.029 32.661 0.000 0.000 LGA S 36 S 36 33.728 2 0.015 0.015 33.728 0.000 0.000 LGA Y 37 Y 37 33.321 8 0.133 0.133 34.611 0.000 0.000 LGA T 38 T 38 35.300 3 0.128 0.128 35.300 0.000 0.000 LGA P 39 P 39 31.944 3 0.263 0.263 36.099 0.000 0.000 LGA T 40 T 40 35.405 3 0.626 0.626 35.617 0.000 0.000 LGA N 41 N 41 35.235 4 0.620 0.620 36.943 0.000 0.000 LGA G 42 G 42 35.665 0 0.043 0.043 36.630 0.000 0.000 LGA G 43 G 43 33.420 0 0.129 0.129 33.742 0.000 0.000 LGA Q 44 Q 44 31.790 5 0.067 0.067 32.184 0.000 0.000 LGA R 45 R 45 33.051 7 0.266 0.266 33.051 0.000 0.000 LGA V 46 V 46 30.456 3 0.177 0.177 32.429 0.000 0.000 LGA D 47 D 47 33.600 4 0.471 0.471 33.600 0.000 0.000 LGA H 48 H 48 30.802 6 0.233 0.233 31.597 0.000 0.000 LGA H 49 H 49 29.581 6 0.150 0.150 29.858 0.000 0.000 LGA K 50 K 50 27.198 5 0.247 0.247 28.243 0.000 0.000 LGA W 51 W 51 22.922 10 0.351 0.351 24.377 0.000 0.000 LGA V 52 V 52 25.553 3 0.581 0.581 27.727 0.000 0.000 LGA I 53 I 53 25.681 4 0.114 0.114 28.008 0.000 0.000 LGA Q 54 Q 54 31.390 5 0.598 0.598 34.338 0.000 0.000 LGA E 55 E 55 32.666 5 0.691 0.691 32.666 0.000 0.000 LGA E 56 E 56 32.923 5 0.616 0.616 36.393 0.000 0.000 LGA I 57 I 57 37.302 4 0.109 0.109 39.415 0.000 0.000 LGA K 58 K 58 43.868 5 0.416 0.416 47.058 0.000 0.000 LGA D 59 D 59 46.148 4 0.638 0.638 46.148 0.000 0.000 LGA A 60 A 60 42.093 1 0.498 0.498 45.347 0.000 0.000 LGA G 61 G 61 45.340 0 0.447 0.447 45.340 0.000 0.000 LGA D 62 D 62 43.740 4 0.043 0.043 44.348 0.000 0.000 LGA K 63 K 63 43.762 5 0.683 0.683 43.857 0.000 0.000 LGA T 64 T 64 38.226 3 0.193 0.193 40.446 0.000 0.000 LGA L 65 L 65 36.945 4 0.098 0.098 36.945 0.000 0.000 LGA Q 66 Q 66 36.263 5 0.031 0.031 37.801 0.000 0.000 LGA P 67 P 67 35.294 3 0.183 0.183 36.044 0.000 0.000 LGA G 68 G 68 38.046 0 0.667 0.667 41.504 0.000 0.000 LGA D 69 D 69 38.987 4 0.158 0.158 39.020 0.000 0.000 LGA Q 70 Q 70 41.017 5 0.563 0.563 41.843 0.000 0.000 LGA V 71 V 71 38.236 3 0.640 0.640 38.943 0.000 0.000 LGA I 72 I 72 34.790 4 0.158 0.158 36.157 0.000 0.000 LGA L 73 L 73 31.553 4 0.154 0.154 32.733 0.000 0.000 LGA E 74 E 74 28.594 5 0.619 0.619 30.097 0.000 0.000 LGA A 75 A 75 25.847 1 0.036 0.036 26.064 0.000 0.000 LGA S 76 S 76 24.306 2 0.043 0.043 25.070 0.000 0.000 LGA H 77 H 77 20.442 6 0.082 0.082 21.205 0.000 0.000 LGA K 93 K 93 9.207 5 0.346 0.346 9.207 3.095 1.376 LGA T 94 T 94 8.068 3 0.015 0.015 8.699 4.286 2.449 LGA T 95 T 95 8.473 3 0.114 0.114 8.473 4.762 2.721 LGA V 96 V 96 8.786 3 0.125 0.125 9.036 2.500 1.429 LGA Y 97 Y 97 8.551 8 0.209 0.209 8.551 4.405 1.468 LGA M 98 M 98 8.630 4 0.174 0.174 8.735 3.810 1.905 LGA V 99 V 99 8.108 3 0.050 0.050 8.271 4.762 2.721 LGA D 100 D 100 8.133 4 0.097 0.097 8.169 5.357 2.679 LGA Y 101 Y 101 8.305 8 0.031 0.031 8.445 4.762 1.587 LGA T 102 T 102 8.437 3 0.133 0.133 9.863 2.857 1.633 LGA S 103 S 103 9.657 2 0.177 0.177 9.691 1.310 0.873 LGA T 104 T 104 11.670 3 0.297 0.297 11.893 0.000 0.000 LGA T 105 T 105 13.467 3 0.347 0.347 13.467 0.000 0.000 LGA S 106 S 106 8.244 2 0.042 0.042 9.837 5.595 3.730 LGA G 107 G 107 5.355 0 0.480 0.480 6.287 32.500 32.500 LGA E 108 E 108 1.586 5 0.120 0.120 3.312 61.429 27.302 LGA K 109 K 109 0.521 5 0.094 0.094 1.480 90.595 40.265 LGA V 110 V 110 1.175 3 0.091 0.091 1.598 81.548 46.599 LGA K 111 K 111 2.594 5 0.089 0.089 2.594 64.881 28.836 LGA N 112 N 112 3.301 4 0.359 0.359 3.328 67.976 33.988 LGA H 113 H 113 2.933 6 0.237 0.237 3.099 61.429 24.571 LGA K 114 K 114 2.495 5 0.089 0.089 3.624 53.810 23.915 LGA W 115 W 115 3.111 10 0.133 0.133 5.114 42.619 12.177 LGA V 116 V 116 2.722 3 0.041 0.041 2.722 71.190 40.680 LGA T 117 T 117 1.307 3 0.175 0.175 3.768 65.595 37.483 LGA E 118 E 118 4.373 5 0.344 0.344 5.239 40.952 18.201 LGA D 119 D 119 1.535 4 0.600 0.600 2.622 66.905 33.452 LGA E 120 E 120 6.840 5 0.698 0.698 7.441 16.190 7.196 LGA L 121 L 121 7.713 4 0.071 0.071 7.713 10.119 5.060 LGA S 122 S 122 7.791 2 0.096 0.096 9.228 5.119 3.413 LGA A 123 A 123 7.472 1 0.428 0.428 8.641 6.905 5.524 LGA K 124 K 124 11.733 5 0.437 0.437 11.733 0.119 0.053 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 102 408 408 100.00 800 408 51.00 124 SUMMARY(RMSD_GDC): 15.524 15.511 15.511 7.995 4.018 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 102 124 4.0 13 2.53 11.694 10.646 0.495 LGA_LOCAL RMSD: 2.528 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 25.649 Number of assigned atoms: 102 Std_ASGN_ATOMS RMSD: 15.524 Standard rmsd on all 102 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.289177 * X + 0.954860 * Y + 0.067959 * Z + 8.597054 Y_new = 0.759543 * X + -0.185658 * Y + -0.623399 * Z + -7.823241 Z_new = -0.582642 * X + 0.231890 * Y + -0.778945 * Z + -13.826548 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.207016 0.621975 2.852250 [DEG: 69.1569 35.6366 163.4219 ] ZXZ: 0.108584 2.463778 -1.192017 [DEG: 6.2214 141.1641 -68.2976 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0579AL396_1 REMARK 2: T0579.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0579AL396_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 102 124 4.0 13 2.53 10.646 15.52 REMARK ---------------------------------------------------------- MOLECULE T0579AL396_1 REMARK Aligment from pdb entry: 2rqe_A ATOM 1 N MET 1 8.981 -6.815 -14.600 1.00 0.00 ATOM 2 CA MET 1 9.119 -5.459 -14.078 1.00 0.00 ATOM 3 C MET 1 8.657 -4.431 -15.106 1.00 0.00 ATOM 4 O MET 1 8.914 -4.573 -16.301 1.00 0.00 ATOM 5 N LYS 2 7.976 -3.393 -14.630 1.00 0.00 ATOM 6 CA LYS 2 7.478 -2.340 -15.506 1.00 0.00 ATOM 7 C LYS 2 7.606 -0.972 -14.841 1.00 0.00 ATOM 8 O LYS 2 6.666 -0.485 -14.214 1.00 0.00 ATOM 9 N VAL 3 8.777 -0.359 -14.982 1.00 0.00 ATOM 10 CA VAL 3 9.028 0.952 -14.397 1.00 0.00 ATOM 11 C VAL 3 9.031 0.881 -12.873 1.00 0.00 ATOM 12 O VAL 3 8.234 0.171 -12.259 1.00 0.00 ATOM 13 N SER 5 9.947 1.634 -12.247 1.00 0.00 ATOM 14 CA SER 5 10.076 1.673 -10.787 1.00 0.00 ATOM 15 C SER 5 8.899 2.377 -10.121 1.00 0.00 ATOM 16 O SER 5 8.093 3.042 -10.772 1.00 0.00 ATOM 17 N GLN 6 8.797 2.231 -8.792 1.00 0.00 ATOM 18 CA GLN 6 7.722 2.847 -8.007 1.00 0.00 ATOM 19 C GLN 6 7.858 4.363 -7.928 1.00 0.00 ATOM 20 O GLN 6 8.944 4.886 -7.678 1.00 0.00 ATOM 21 N VAL 7 6.751 5.065 -8.143 1.00 0.00 ATOM 22 CA VAL 7 6.746 6.522 -8.094 1.00 0.00 ATOM 23 C VAL 7 6.652 7.022 -6.656 1.00 0.00 ATOM 24 O VAL 7 5.865 6.509 -5.859 1.00 0.00 ATOM 25 N ILE 8 7.460 8.026 -6.329 1.00 0.00 ATOM 26 CA ILE 8 7.468 8.593 -4.986 1.00 0.00 ATOM 27 C ILE 8 6.572 9.825 -4.905 1.00 0.00 ATOM 28 O ILE 8 7.055 10.958 -4.908 1.00 0.00 ATOM 29 N ILE 9 5.266 9.596 -4.831 1.00 0.00 ATOM 30 CA ILE 9 4.301 10.687 -4.747 1.00 0.00 ATOM 31 C ILE 9 4.222 11.236 -3.326 1.00 0.00 ATOM 32 O ILE 9 3.720 10.570 -2.421 1.00 0.00 ATOM 33 N ASN 10 4.720 12.455 -3.139 1.00 0.00 ATOM 34 CA ASN 10 4.703 13.093 -1.828 1.00 0.00 ATOM 35 C ASN 10 3.329 13.684 -1.527 1.00 0.00 ATOM 36 O ASN 10 2.347 13.373 -2.201 1.00 0.00 ATOM 37 N THR 11 3.268 14.537 -0.510 1.00 0.00 ATOM 38 CA THR 11 2.015 15.173 -0.121 1.00 0.00 ATOM 39 C THR 11 2.213 16.663 0.135 1.00 0.00 ATOM 40 O THR 11 2.332 17.095 1.282 1.00 0.00 ATOM 41 N SER 12 2.246 17.444 -0.940 1.00 0.00 ATOM 42 CA SER 12 2.429 18.886 -0.830 1.00 0.00 ATOM 43 C SER 12 1.189 19.554 -0.247 1.00 0.00 ATOM 44 O SER 12 0.153 18.913 -0.062 1.00 0.00 ATOM 45 N HIS 13 1.300 20.847 0.041 1.00 0.00 ATOM 46 CA HIS 13 0.186 21.604 0.603 1.00 0.00 ATOM 47 C HIS 13 -1.061 21.460 -0.265 1.00 0.00 ATOM 48 O HIS 13 -1.023 20.896 -1.359 1.00 0.00 ATOM 49 N MET 14 -2.192 21.982 0.233 1.00 0.00 ATOM 50 CA MET 14 -3.470 21.923 -0.482 1.00 0.00 ATOM 51 C MET 14 -3.487 22.817 -1.717 1.00 0.00 ATOM 52 O MET 14 -4.550 23.180 -2.221 1.00 0.00 ATOM 53 N LYS 15 -2.301 23.170 -2.201 1.00 0.00 ATOM 54 CA LYS 15 -2.177 24.020 -3.380 1.00 0.00 ATOM 55 C LYS 15 -1.278 23.371 -4.427 1.00 0.00 ATOM 56 O LYS 15 -0.694 24.053 -5.268 1.00 0.00 ATOM 57 N GLY 16 -1.173 22.047 -4.371 1.00 0.00 ATOM 58 CA GLY 16 -0.345 21.327 -5.322 1.00 0.00 ATOM 59 C GLY 16 0.157 20.008 -4.771 1.00 0.00 ATOM 60 O GLY 16 -0.168 19.633 -3.643 1.00 0.00 ATOM 61 N MET 17 0.950 19.299 -5.567 1.00 0.00 ATOM 62 CA MET 17 1.497 18.011 -5.154 1.00 0.00 ATOM 63 C MET 17 2.844 17.753 -5.821 1.00 0.00 ATOM 64 O MET 17 3.202 18.411 -6.797 1.00 0.00 ATOM 65 N LYS 18 3.587 16.788 -5.287 1.00 0.00 ATOM 66 CA LYS 18 4.895 16.442 -5.830 1.00 0.00 ATOM 67 C LYS 18 4.988 14.945 -6.111 1.00 0.00 ATOM 68 O LYS 18 4.541 14.123 -5.310 1.00 0.00 ATOM 69 N THR 25 5.572 14.597 -7.253 1.00 0.00 ATOM 70 CA THR 25 5.724 13.199 -7.640 1.00 0.00 ATOM 71 C THR 25 7.022 12.980 -8.406 1.00 0.00 ATOM 72 O THR 25 7.155 13.397 -9.557 1.00 0.00 ATOM 73 N GLY 26 7.981 12.322 -7.761 1.00 0.00 ATOM 74 CA GLY 26 9.271 12.049 -8.381 1.00 0.00 ATOM 75 C GLY 26 9.556 10.550 -8.409 1.00 0.00 ATOM 76 O GLY 26 9.013 9.789 -7.608 1.00 0.00 ATOM 77 N ALA 27 10.412 10.133 -9.335 1.00 0.00 ATOM 78 CA ALA 27 10.771 8.726 -9.467 1.00 0.00 ATOM 79 C ALA 27 12.250 8.564 -9.796 1.00 0.00 ATOM 80 O ALA 27 12.870 9.425 -10.423 1.00 0.00 ATOM 81 N TYR 28 12.833 7.435 -9.366 1.00 0.00 ATOM 82 CA TYR 28 14.247 7.133 -9.604 1.00 0.00 ATOM 83 C TYR 28 14.537 6.838 -11.072 1.00 0.00 ATOM 84 O TYR 28 13.951 5.930 -11.660 1.00 0.00 ATOM 85 N ASP 29 15.446 7.612 -11.657 1.00 0.00 ATOM 86 CA ASP 29 15.815 7.433 -13.056 1.00 0.00 ATOM 87 C ASP 29 16.872 6.343 -13.204 1.00 0.00 ATOM 88 O ASP 29 17.898 6.364 -12.524 1.00 0.00 ATOM 89 N THR 30 16.613 5.391 -14.095 1.00 0.00 ATOM 90 CA THR 30 17.543 4.292 -14.329 1.00 0.00 ATOM 91 C THR 30 18.051 4.306 -15.768 1.00 0.00 ATOM 92 O THR 30 18.814 3.433 -16.177 1.00 0.00 ATOM 93 N THR 31 17.619 5.305 -16.532 1.00 0.00 ATOM 94 CA THR 31 18.040 5.415 -17.917 1.00 0.00 ATOM 95 C THR 31 16.891 5.762 -18.845 1.00 0.00 ATOM 96 O THR 31 16.882 5.360 -20.009 1.00 0.00 ATOM 97 N ALA 32 15.920 6.508 -18.329 1.00 0.00 ATOM 98 CA ALA 32 14.761 6.905 -19.119 1.00 0.00 ATOM 99 C ALA 32 15.079 8.128 -19.975 1.00 0.00 ATOM 100 O ALA 32 16.036 8.855 -19.707 1.00 0.00 ATOM 101 N TYR 33 14.270 8.349 -21.007 1.00 0.00 ATOM 102 CA TYR 33 14.467 9.481 -21.905 1.00 0.00 ATOM 103 C TYR 33 13.190 10.308 -22.024 1.00 0.00 ATOM 104 O TYR 33 13.210 11.432 -22.528 1.00 0.00 ATOM 105 N VAL 34 12.082 9.745 -21.555 1.00 0.00 ATOM 106 CA VAL 34 10.795 10.430 -21.607 1.00 0.00 ATOM 107 C VAL 34 9.869 9.935 -20.502 1.00 0.00 ATOM 108 O VAL 34 9.824 8.740 -20.203 1.00 0.00 ATOM 109 N VAL 35 9.129 10.859 -19.898 1.00 0.00 ATOM 110 CA VAL 35 8.202 10.515 -18.825 1.00 0.00 ATOM 111 C VAL 35 6.850 11.190 -19.039 1.00 0.00 ATOM 112 O VAL 35 6.777 12.321 -19.516 1.00 0.00 ATOM 113 N SER 36 5.782 10.484 -18.683 1.00 0.00 ATOM 114 CA SER 36 4.432 11.014 -18.833 1.00 0.00 ATOM 115 C SER 36 3.635 10.862 -17.542 1.00 0.00 ATOM 116 O SER 36 3.576 9.778 -16.962 1.00 0.00 ATOM 117 N TYR 37 3.024 11.955 -17.098 1.00 0.00 ATOM 118 CA TYR 37 2.231 11.943 -15.874 1.00 0.00 ATOM 119 C TYR 37 0.761 12.221 -16.174 1.00 0.00 ATOM 120 O TYR 37 0.415 13.268 -16.721 1.00 0.00 ATOM 121 N THR 38 -0.099 11.273 -15.815 1.00 0.00 ATOM 122 CA THR 38 -1.532 11.414 -16.046 1.00 0.00 ATOM 123 C THR 38 -2.329 10.636 -15.004 1.00 0.00 ATOM 124 O THR 38 -2.624 9.456 -15.187 1.00 0.00 ATOM 125 N PRO 39 -2.675 11.306 -13.907 1.00 0.00 ATOM 126 CA PRO 39 -3.433 10.661 -12.852 1.00 0.00 ATOM 127 C PRO 39 -4.394 11.612 -12.165 1.00 0.00 ATOM 128 O PRO 39 -4.504 12.777 -12.545 1.00 0.00 ATOM 129 N THR 40 -5.094 11.113 -11.151 1.00 0.00 ATOM 130 CA THR 40 -6.051 11.925 -10.410 1.00 0.00 ATOM 131 C THR 40 -5.899 11.708 -8.908 1.00 0.00 ATOM 132 O THR 40 -4.910 11.133 -8.449 1.00 0.00 ATOM 133 N ASN 41 -6.884 12.169 -8.145 1.00 0.00 ATOM 134 CA ASN 41 -6.861 12.025 -6.693 1.00 0.00 ATOM 135 C ASN 41 -8.157 11.398 -6.188 1.00 0.00 ATOM 136 O ASN 41 -9.225 11.614 -6.757 1.00 0.00 ATOM 137 N GLY 42 -8.052 10.622 -5.114 1.00 0.00 ATOM 138 CA GLY 42 -9.217 9.966 -4.531 1.00 0.00 ATOM 139 C GLY 42 -10.190 9.516 -5.617 1.00 0.00 ATOM 140 O GLY 42 -11.404 9.542 -5.424 1.00 0.00 ATOM 141 N GLY 43 -9.645 9.103 -6.757 1.00 0.00 ATOM 142 CA GLY 43 -10.465 8.648 -7.873 1.00 0.00 ATOM 143 C GLY 43 -9.628 7.862 -8.879 1.00 0.00 ATOM 144 O GLY 43 -8.575 8.323 -9.318 1.00 0.00 ATOM 145 N GLN 44 -10.105 6.674 -9.237 1.00 0.00 ATOM 146 CA GLN 44 -9.399 5.824 -10.188 1.00 0.00 ATOM 147 C GLN 44 -10.058 5.885 -11.564 1.00 0.00 ATOM 148 O GLN 44 -11.265 6.093 -11.677 1.00 0.00 ATOM 149 N ARG 45 -9.254 5.702 -12.606 1.00 0.00 ATOM 150 CA ARG 45 -9.758 5.734 -13.975 1.00 0.00 ATOM 151 C ARG 45 -9.905 4.324 -14.534 1.00 0.00 ATOM 152 O ARG 45 -9.710 3.340 -13.820 1.00 0.00 ATOM 153 N VAL 46 -10.249 4.233 -15.814 1.00 0.00 ATOM 154 CA VAL 46 -10.424 2.940 -16.468 1.00 0.00 ATOM 155 C VAL 46 -9.993 3.008 -17.930 1.00 0.00 ATOM 156 O VAL 46 -10.144 4.037 -18.587 1.00 0.00 ATOM 157 N ASP 47 -9.452 1.902 -18.433 1.00 0.00 ATOM 158 CA ASP 47 -9.006 1.856 -19.814 1.00 0.00 ATOM 159 C ASP 47 -7.847 2.797 -20.080 1.00 0.00 ATOM 160 O ASP 47 -7.760 3.398 -21.152 1.00 0.00 ATOM 161 N HIS 48 -6.956 2.926 -19.104 1.00 0.00 ATOM 162 CA HIS 48 -5.797 3.803 -19.238 1.00 0.00 ATOM 163 C HIS 48 -6.157 5.069 -20.008 1.00 0.00 ATOM 164 O HIS 48 -5.895 5.173 -21.206 1.00 0.00 ATOM 165 N HIS 49 -6.757 6.029 -19.311 1.00 0.00 ATOM 166 CA HIS 49 -7.153 7.288 -19.931 1.00 0.00 ATOM 167 C HIS 49 -6.522 8.473 -19.203 1.00 0.00 ATOM 168 O HIS 49 -5.916 8.314 -18.145 1.00 0.00 ATOM 169 N LYS 50 -6.671 9.662 -19.780 1.00 0.00 ATOM 170 CA LYS 50 -6.119 10.872 -19.187 1.00 0.00 ATOM 171 C LYS 50 -7.003 11.382 -18.054 1.00 0.00 ATOM 172 O LYS 50 -8.009 12.050 -18.290 1.00 0.00 ATOM 173 N TRP 51 -6.622 11.060 -16.822 1.00 0.00 ATOM 174 CA TRP 51 -7.392 11.492 -15.670 1.00 0.00 ATOM 175 C TRP 51 -7.538 12.999 -15.604 1.00 0.00 ATOM 176 O TRP 51 -8.165 13.609 -16.471 1.00 0.00 ATOM 177 N VAL 52 -6.961 13.604 -14.570 1.00 0.00 ATOM 178 CA VAL 52 -7.031 15.050 -14.393 1.00 0.00 ATOM 179 C VAL 52 -5.715 15.711 -14.790 1.00 0.00 ATOM 180 O VAL 52 -5.695 16.634 -15.606 1.00 0.00 ATOM 181 N ILE 53 -4.621 15.234 -14.210 1.00 0.00 ATOM 182 CA ILE 53 -3.300 15.780 -14.504 1.00 0.00 ATOM 183 C ILE 53 -2.831 15.352 -15.890 1.00 0.00 ATOM 184 O ILE 53 -3.154 14.259 -16.355 1.00 0.00 ATOM 185 N GLN 54 -2.066 16.220 -16.545 1.00 0.00 ATOM 186 CA GLN 54 -1.555 15.933 -17.880 1.00 0.00 ATOM 187 C GLN 54 -0.231 16.651 -18.121 1.00 0.00 ATOM 188 O GLN 54 -0.162 17.880 -18.082 1.00 0.00 ATOM 189 N GLU 55 0.819 15.875 -18.371 1.00 0.00 ATOM 190 CA GLU 55 2.142 16.435 -18.616 1.00 0.00 ATOM 191 C GLU 55 3.129 15.343 -19.021 1.00 0.00 ATOM 192 O GLU 55 2.876 14.156 -18.813 1.00 0.00 ATOM 193 N GLU 56 4.252 15.753 -19.599 1.00 0.00 ATOM 194 CA GLU 56 5.276 14.810 -20.033 1.00 0.00 ATOM 195 C GLU 56 6.673 15.378 -19.795 1.00 0.00 ATOM 196 O GLU 56 7.030 16.422 -20.342 1.00 0.00 ATOM 197 N ILE 57 7.455 14.683 -18.976 1.00 0.00 ATOM 198 CA ILE 57 8.812 15.118 -18.666 1.00 0.00 ATOM 199 C ILE 57 9.803 14.611 -19.708 1.00 0.00 ATOM 200 O ILE 57 10.088 13.415 -19.780 1.00 0.00 ATOM 201 N LYS 58 10.329 15.529 -20.514 1.00 0.00 ATOM 202 CA LYS 58 11.290 15.175 -21.550 1.00 0.00 ATOM 203 C LYS 58 12.722 15.352 -21.057 1.00 0.00 ATOM 204 O LYS 58 13.634 15.607 -21.844 1.00 0.00 ATOM 205 N ASP 59 12.913 15.212 -19.750 1.00 0.00 ATOM 206 CA ASP 59 14.235 15.355 -19.150 1.00 0.00 ATOM 207 C ASP 59 14.144 15.362 -17.627 1.00 0.00 ATOM 208 O ASP 59 13.286 16.017 -17.036 1.00 0.00 ATOM 209 N ALA 60 15.050 14.616 -16.976 1.00 0.00 ATOM 210 CA ALA 60 15.093 14.523 -15.515 1.00 0.00 ATOM 211 C ALA 60 15.550 15.824 -14.862 1.00 0.00 ATOM 212 O ALA 60 15.758 16.830 -15.541 1.00 0.00 ATOM 213 N GLY 61 15.706 15.797 -13.544 1.00 0.00 ATOM 214 CA GLY 61 16.140 16.973 -12.800 1.00 0.00 ATOM 215 C GLY 61 16.768 16.573 -11.469 1.00 0.00 ATOM 216 O GLY 61 16.078 16.121 -10.556 1.00 0.00 ATOM 217 N ASP 62 18.082 16.744 -11.365 1.00 0.00 ATOM 218 CA ASP 62 18.803 16.402 -10.144 1.00 0.00 ATOM 219 C ASP 62 19.125 14.911 -10.102 1.00 0.00 ATOM 220 O ASP 62 19.477 14.370 -9.055 1.00 0.00 ATOM 221 N LYS 63 19.003 14.252 -11.250 1.00 0.00 ATOM 222 CA LYS 63 19.286 12.831 -11.323 1.00 0.00 ATOM 223 C LYS 63 18.024 11.991 -11.379 1.00 0.00 ATOM 224 O LYS 63 18.066 10.821 -11.760 1.00 0.00 ATOM 225 N THR 64 16.900 12.590 -10.999 1.00 0.00 ATOM 226 CA THR 64 15.622 11.888 -11.004 1.00 0.00 ATOM 227 C THR 64 14.533 12.748 -11.640 1.00 0.00 ATOM 228 O THR 64 14.671 13.967 -11.739 1.00 0.00 ATOM 229 N LEU 65 13.453 12.104 -12.069 1.00 0.00 ATOM 230 CA LEU 65 12.341 12.810 -12.695 1.00 0.00 ATOM 231 C LEU 65 11.383 13.358 -11.643 1.00 0.00 ATOM 232 O LEU 65 10.480 12.657 -11.186 1.00 0.00 ATOM 233 N GLN 66 11.585 14.616 -11.263 1.00 0.00 ATOM 234 CA GLN 66 10.738 15.257 -10.265 1.00 0.00 ATOM 235 C GLN 66 9.658 16.108 -10.927 1.00 0.00 ATOM 236 O GLN 66 9.896 16.745 -11.954 1.00 0.00 ATOM 237 N PRO 67 8.470 16.114 -10.331 1.00 0.00 ATOM 238 CA PRO 67 7.353 16.887 -10.862 1.00 0.00 ATOM 239 C PRO 67 6.584 17.574 -9.737 1.00 0.00 ATOM 240 O PRO 67 6.580 17.107 -8.598 1.00 0.00 ATOM 241 N GLY 68 5.934 18.685 -10.066 1.00 0.00 ATOM 242 CA GLY 68 5.164 19.439 -9.083 1.00 0.00 ATOM 243 C GLY 68 3.922 20.053 -9.722 1.00 0.00 ATOM 244 O GLY 68 3.981 20.586 -10.831 1.00 0.00 ATOM 245 N ASP 69 2.799 19.976 -9.016 1.00 0.00 ATOM 246 CA ASP 69 1.544 20.526 -9.514 1.00 0.00 ATOM 247 C ASP 69 1.106 21.725 -8.680 1.00 0.00 ATOM 248 O ASP 69 1.806 22.139 -7.755 1.00 0.00 ATOM 249 N GLN 70 -0.054 22.281 -9.013 1.00 0.00 ATOM 250 CA GLN 70 -0.582 23.435 -8.296 1.00 0.00 ATOM 251 C GLN 70 -2.101 23.351 -8.176 1.00 0.00 ATOM 252 O GLN 70 -2.758 24.316 -7.788 1.00 0.00 ATOM 253 N VAL 71 -2.654 22.190 -8.515 1.00 0.00 ATOM 254 CA VAL 71 -4.096 21.981 -8.447 1.00 0.00 ATOM 255 C VAL 71 -4.426 20.733 -7.635 1.00 0.00 ATOM 256 O VAL 71 -5.571 20.282 -7.609 1.00 0.00 ATOM 257 N ILE 72 -3.416 20.179 -6.973 1.00 0.00 ATOM 258 CA ILE 72 -3.599 18.985 -6.158 1.00 0.00 ATOM 259 C ILE 72 -3.785 19.346 -4.688 1.00 0.00 ATOM 260 O ILE 72 -2.819 19.636 -3.983 1.00 0.00 ATOM 261 N LEU 73 -5.034 19.329 -4.233 1.00 0.00 ATOM 262 CA LEU 73 -5.345 19.653 -2.846 1.00 0.00 ATOM 263 C LEU 73 -5.579 18.390 -2.026 1.00 0.00 ATOM 264 O LEU 73 -6.709 17.913 -1.907 1.00 0.00 ATOM 265 N GLU 74 -4.504 17.850 -1.461 1.00 0.00 ATOM 266 CA GLU 74 -4.591 16.641 -0.651 1.00 0.00 ATOM 267 C GLU 74 -3.752 16.772 0.616 1.00 0.00 ATOM 268 O GLU 74 -2.989 17.725 0.773 1.00 0.00 ATOM 269 N ALA 75 -3.896 15.807 1.518 1.00 0.00 ATOM 270 CA ALA 75 -3.149 15.810 2.770 1.00 0.00 ATOM 271 C ALA 75 -3.006 14.396 3.323 1.00 0.00 ATOM 272 O ALA 75 -3.826 13.522 3.039 1.00 0.00 ATOM 273 N SER 76 -1.961 14.178 4.114 1.00 0.00 ATOM 274 CA SER 76 -1.713 12.870 4.709 1.00 0.00 ATOM 275 C SER 76 -3.021 12.140 4.995 1.00 0.00 ATOM 276 O SER 76 -3.825 12.583 5.812 1.00 0.00 ATOM 277 N HIS 77 -3.224 11.015 4.315 1.00 0.00 ATOM 278 CA HIS 77 -4.434 10.239 4.512 1.00 0.00 ATOM 279 C HIS 77 -5.170 9.974 3.213 1.00 0.00 ATOM 280 O HIS 77 -5.978 9.049 3.128 1.00 0.00 ATOM 281 N LYS 93 -4.892 10.788 2.201 1.00 0.00 ATOM 282 CA LYS 93 -5.534 10.638 0.900 1.00 0.00 ATOM 283 C LYS 93 -4.959 9.443 0.145 1.00 0.00 ATOM 284 O LYS 93 -4.155 8.682 0.684 1.00 0.00 ATOM 285 N THR 94 -5.376 9.283 -1.106 1.00 0.00 ATOM 286 CA THR 94 -4.904 8.182 -1.936 1.00 0.00 ATOM 287 C THR 94 -4.882 8.581 -3.408 1.00 0.00 ATOM 288 O THR 94 -5.558 9.526 -3.815 1.00 0.00 ATOM 289 N THR 95 -4.102 7.854 -4.202 1.00 0.00 ATOM 290 CA THR 95 -3.995 8.132 -5.629 1.00 0.00 ATOM 291 C THR 95 -4.093 6.849 -6.447 1.00 0.00 ATOM 292 O THR 95 -3.670 5.782 -6.001 1.00 0.00 ATOM 293 N VAL 96 -4.651 6.961 -7.647 1.00 0.00 ATOM 294 CA VAL 96 -4.804 5.810 -8.529 1.00 0.00 ATOM 295 C VAL 96 -4.696 6.226 -9.993 1.00 0.00 ATOM 296 O VAL 96 -5.617 6.823 -10.551 1.00 0.00 ATOM 297 N TYR 97 -3.563 5.904 -10.610 1.00 0.00 ATOM 298 CA TYR 97 -3.332 6.245 -12.009 1.00 0.00 ATOM 299 C TYR 97 -2.170 5.437 -12.580 1.00 0.00 ATOM 300 O TYR 97 -1.807 4.389 -12.045 1.00 0.00 ATOM 301 N MET 98 -1.593 5.932 -13.668 1.00 0.00 ATOM 302 CA MET 98 -0.472 5.256 -14.313 1.00 0.00 ATOM 303 C MET 98 0.507 6.265 -14.900 1.00 0.00 ATOM 304 O MET 98 0.210 7.457 -14.987 1.00 0.00 ATOM 305 N VAL 99 1.678 5.782 -15.304 1.00 0.00 ATOM 306 CA VAL 99 2.703 6.643 -15.883 1.00 0.00 ATOM 307 C VAL 99 3.395 5.960 -17.057 1.00 0.00 ATOM 308 O VAL 99 3.552 4.739 -17.072 1.00 0.00 ATOM 309 N ASP 100 3.810 6.756 -18.036 1.00 0.00 ATOM 310 CA ASP 100 4.487 6.228 -19.216 1.00 0.00 ATOM 311 C ASP 100 5.942 6.684 -19.257 1.00 0.00 ATOM 312 O ASP 100 6.257 7.824 -18.917 1.00 0.00 ATOM 313 N TYR 101 6.826 5.786 -19.677 1.00 0.00 ATOM 314 CA TYR 101 8.248 6.095 -19.764 1.00 0.00 ATOM 315 C TYR 101 8.863 5.498 -21.025 1.00 0.00 ATOM 316 O TYR 101 8.224 4.719 -21.731 1.00 0.00 ATOM 317 N THR 102 10.110 5.868 -21.300 1.00 0.00 ATOM 318 CA THR 102 10.813 5.368 -22.475 1.00 0.00 ATOM 319 C THR 102 12.317 5.299 -22.229 1.00 0.00 ATOM 320 O THR 102 13.027 6.294 -22.378 1.00 0.00 ATOM 321 N SER 103 12.796 4.118 -21.852 1.00 0.00 ATOM 322 CA SER 103 14.215 3.917 -21.587 1.00 0.00 ATOM 323 C SER 103 14.831 2.974 -22.615 1.00 0.00 ATOM 324 O SER 103 14.252 1.941 -22.950 1.00 0.00 ATOM 325 N THR 104 16.010 3.335 -23.110 1.00 0.00 ATOM 326 CA THR 104 16.706 2.519 -24.098 1.00 0.00 ATOM 327 C THR 104 15.767 2.117 -25.231 1.00 0.00 ATOM 328 O THR 104 15.889 1.031 -25.796 1.00 0.00 ATOM 329 N THR 105 14.829 3.001 -25.557 1.00 0.00 ATOM 330 CA THR 105 13.881 2.719 -26.619 1.00 0.00 ATOM 331 C THR 105 13.090 1.451 -26.370 1.00 0.00 ATOM 332 O THR 105 12.700 0.758 -27.311 1.00 0.00 ATOM 333 N SER 106 12.855 1.142 -25.100 1.00 0.00 ATOM 334 CA SER 106 12.107 -0.054 -24.729 1.00 0.00 ATOM 335 C SER 106 10.633 0.271 -24.510 1.00 0.00 ATOM 336 O SER 106 9.756 -0.313 -25.145 1.00 0.00 ATOM 337 N GLY 107 10.367 1.211 -23.607 1.00 0.00 ATOM 338 CA GLY 107 8.999 1.600 -23.322 1.00 0.00 ATOM 339 C GLY 107 8.431 0.881 -22.114 1.00 0.00 ATOM 340 O GLY 107 8.248 -0.337 -22.136 1.00 0.00 ATOM 341 N GLU 108 8.154 1.634 -21.055 1.00 0.00 ATOM 342 CA GLU 108 7.608 1.060 -19.831 1.00 0.00 ATOM 343 C GLU 108 6.430 1.885 -19.322 1.00 0.00 ATOM 344 O GLU 108 6.159 2.976 -19.822 1.00 0.00 ATOM 345 N LYS 109 5.732 1.354 -18.323 1.00 0.00 ATOM 346 CA LYS 109 4.582 2.038 -17.745 1.00 0.00 ATOM 347 C LYS 109 4.105 1.328 -16.482 1.00 0.00 ATOM 348 O LYS 109 4.042 0.100 -16.436 1.00 0.00 ATOM 349 N VAL 110 3.772 2.109 -15.459 1.00 0.00 ATOM 350 CA VAL 110 3.303 1.554 -14.196 1.00 0.00 ATOM 351 C VAL 110 1.800 1.300 -14.238 1.00 0.00 ATOM 352 O VAL 110 1.067 1.971 -14.965 1.00 0.00 ATOM 353 N LYS 111 1.347 0.326 -13.456 1.00 0.00 ATOM 354 CA LYS 111 -0.070 -0.016 -13.404 1.00 0.00 ATOM 355 C LYS 111 -0.534 -0.188 -11.961 1.00 0.00 ATOM 356 O LYS 111 0.161 0.205 -11.024 1.00 0.00 ATOM 357 N ASN 112 -1.715 -0.773 -11.790 1.00 0.00 ATOM 358 CA ASN 112 -2.273 -0.995 -10.461 1.00 0.00 ATOM 359 C ASN 112 -2.974 0.260 -9.950 1.00 0.00 ATOM 360 O ASN 112 -4.005 0.180 -9.283 1.00 0.00 ATOM 361 N HIS 113 -2.407 1.420 -10.268 1.00 0.00 ATOM 362 CA HIS 113 -2.991 2.675 -9.834 1.00 0.00 ATOM 363 C HIS 113 -3.448 2.633 -8.390 1.00 0.00 ATOM 364 O HIS 113 -4.632 2.448 -8.112 1.00 0.00 ATOM 365 N LYS 114 -2.506 2.803 -7.467 1.00 0.00 ATOM 366 CA LYS 114 -2.820 2.780 -6.043 1.00 0.00 ATOM 367 C LYS 114 -1.634 3.270 -5.216 1.00 0.00 ATOM 368 O LYS 114 -0.588 2.623 -5.169 1.00 0.00 ATOM 369 N TRP 115 -1.805 4.416 -4.567 1.00 0.00 ATOM 370 CA TRP 115 -0.750 4.993 -3.744 1.00 0.00 ATOM 371 C TRP 115 -1.338 5.824 -2.608 1.00 0.00 ATOM 372 O TRP 115 -2.079 6.779 -2.843 1.00 0.00 ATOM 373 N VAL 116 -1.003 5.454 -1.375 1.00 0.00 ATOM 374 CA VAL 116 -1.499 6.165 -0.204 1.00 0.00 ATOM 375 C VAL 116 -0.523 7.251 0.235 1.00 0.00 ATOM 376 O VAL 116 0.684 7.022 0.308 1.00 0.00 ATOM 377 N THR 117 -1.053 8.434 0.526 1.00 0.00 ATOM 378 CA THR 117 -0.229 9.556 0.959 1.00 0.00 ATOM 379 C THR 117 0.454 9.255 2.288 1.00 0.00 ATOM 380 O THR 117 -0.206 8.983 3.290 1.00 0.00 ATOM 381 N GLU 118 1.784 9.304 2.287 1.00 0.00 ATOM 382 CA GLU 118 2.557 9.036 3.494 1.00 0.00 ATOM 383 C GLU 118 3.832 9.874 3.521 1.00 0.00 ATOM 384 O GLU 118 4.868 9.434 4.018 1.00 0.00 ATOM 385 N ASP 119 3.748 11.086 2.980 1.00 0.00 ATOM 386 CA ASP 119 4.901 11.967 2.951 1.00 0.00 ATOM 387 C ASP 119 4.522 13.411 2.688 1.00 0.00 ATOM 388 O ASP 119 3.849 13.714 1.701 1.00 0.00 ATOM 389 N GLU 120 4.950 14.304 3.572 1.00 0.00 ATOM 390 CA GLU 120 4.649 15.724 3.432 1.00 0.00 ATOM 391 C GLU 120 5.788 16.455 2.726 1.00 0.00 ATOM 392 O GLU 120 6.900 15.938 2.619 1.00 0.00 ATOM 393 N LEU 121 5.503 17.662 2.247 1.00 0.00 ATOM 394 CA LEU 121 6.502 18.465 1.553 1.00 0.00 ATOM 395 C LEU 121 6.058 19.920 1.443 1.00 0.00 ATOM 396 O LEU 121 4.898 20.245 1.692 1.00 0.00 ATOM 397 N SER 122 6.990 20.789 1.070 1.00 0.00 ATOM 398 CA SER 122 6.696 22.210 0.927 1.00 0.00 ATOM 399 C SER 122 7.105 22.713 -0.454 1.00 0.00 ATOM 400 O SER 122 8.224 22.472 -0.907 1.00 0.00 ATOM 401 N ALA 123 6.190 23.411 -1.120 1.00 0.00 ATOM 402 CA ALA 123 6.455 23.944 -2.450 1.00 0.00 ATOM 403 C ALA 123 7.345 25.182 -2.372 1.00 0.00 ATOM 404 O ALA 123 6.978 26.255 -2.849 1.00 0.00 ATOM 405 N LYS 124 8.517 25.023 -1.766 1.00 0.00 ATOM 406 CA LYS 124 9.461 26.125 -1.627 1.00 0.00 ATOM 407 C LYS 124 10.865 25.703 -2.044 1.00 0.00 ATOM 408 O LYS 124 11.044 25.017 -3.052 1.00 0.00 END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 408 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 74.57 35.7 196 79.7 246 ARMSMC SECONDARY STRUCTURE . . 57.91 45.2 104 80.0 130 ARMSMC SURFACE . . . . . . . . 75.32 33.1 118 77.6 152 ARMSMC BURIED . . . . . . . . 73.42 39.7 78 83.0 94 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 103 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 91 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 58 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 65 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 68 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 57 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 34 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 29 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 14 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 15.52 (Number of atoms: 102) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 15.52 102 82.3 124 CRMSCA CRN = ALL/NP . . . . . 0.1522 CRMSCA SECONDARY STRUCTURE . . 14.20 53 81.5 65 CRMSCA SURFACE . . . . . . . . 16.39 63 81.8 77 CRMSCA BURIED . . . . . . . . 14.01 39 83.0 47 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 15.51 408 67.0 609 CRMSMC SECONDARY STRUCTURE . . 14.27 212 65.4 324 CRMSMC SURFACE . . . . . . . . 16.35 252 66.8 377 CRMSMC BURIED . . . . . . . . 14.05 156 67.2 232 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 1381 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 1315 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 774 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 844 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 537 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 15.51 408 21.7 1877 CRMSALL SECONDARY STRUCTURE . . 14.27 212 20.5 1034 CRMSALL SURFACE . . . . . . . . 16.35 252 21.9 1152 CRMSALL BURIED . . . . . . . . 14.05 156 21.5 725 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.463 1.000 0.500 102 82.3 124 ERRCA SECONDARY STRUCTURE . . 13.453 1.000 0.500 53 81.5 65 ERRCA SURFACE . . . . . . . . 15.139 1.000 0.500 63 81.8 77 ERRCA BURIED . . . . . . . . 13.372 1.000 0.500 39 83.0 47 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.444 1.000 0.500 408 67.0 609 ERRMC SECONDARY STRUCTURE . . 13.480 1.000 0.500 212 65.4 324 ERRMC SURFACE . . . . . . . . 15.103 1.000 0.500 252 66.8 377 ERRMC BURIED . . . . . . . . 13.381 1.000 0.500 156 67.2 232 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 1381 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 1315 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 774 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 844 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 537 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.444 1.000 0.500 408 21.7 1877 ERRALL SECONDARY STRUCTURE . . 13.480 1.000 0.500 212 20.5 1034 ERRALL SURFACE . . . . . . . . 15.103 1.000 0.500 252 21.9 1152 ERRALL BURIED . . . . . . . . 13.381 1.000 0.500 156 21.5 725 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 1 3 19 102 124 DISTCA CA (P) 0.00 0.81 0.81 2.42 15.32 124 DISTCA CA (RMS) 0.00 1.97 1.97 3.71 7.79 DISTCA ALL (N) 0 1 2 13 79 408 1877 DISTALL ALL (P) 0.00 0.05 0.11 0.69 4.21 1877 DISTALL ALL (RMS) 0.00 1.97 2.47 4.07 7.76 DISTALL END of the results output