####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 26 ( 218), selected 26 , name T0578TS117_1_2-D1 # Molecule2: number of CA atoms 148 ( 1227), selected 26 , name T0578-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0578TS117_1_2-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 143 - 162 4.89 6.54 LCS_AVERAGE: 13.33 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 138 - 153 1.96 17.72 LCS_AVERAGE: 8.68 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 140 - 153 0.66 16.98 LCS_AVERAGE: 6.52 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 26 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT W 138 W 138 3 16 19 3 3 3 7 7 11 15 16 16 17 17 17 20 21 22 23 23 23 24 24 LCS_GDT E 139 E 139 3 16 19 3 3 3 4 5 9 14 16 16 17 17 18 20 21 22 23 23 23 24 24 LCS_GDT P 140 P 140 14 16 19 10 13 14 14 14 14 15 16 16 17 17 18 19 21 22 23 23 23 24 24 LCS_GDT A 141 A 141 14 16 19 11 13 14 14 14 14 15 16 16 17 17 17 17 19 20 21 21 23 24 24 LCS_GDT D 142 D 142 14 16 19 11 13 14 14 14 14 15 16 16 17 17 17 17 17 20 21 21 23 24 24 LCS_GDT F 143 F 143 14 16 20 11 13 14 14 14 14 15 16 16 17 17 18 20 21 22 23 23 23 24 24 LCS_GDT E 144 E 144 14 16 20 11 13 14 14 14 14 15 16 16 17 17 18 20 21 22 23 23 23 24 24 LCS_GDT A 145 A 145 14 16 20 11 13 14 14 14 14 15 16 16 17 17 17 18 19 21 23 23 23 24 24 LCS_GDT M 146 M 146 14 16 20 11 13 14 14 14 14 15 16 16 17 17 17 20 21 22 23 23 23 24 24 LCS_GDT I 147 I 147 14 16 20 11 13 14 14 14 14 15 16 16 17 17 18 20 21 22 23 23 23 24 24 LCS_GDT K 148 K 148 14 16 20 11 13 14 14 14 14 15 16 16 17 17 18 20 21 22 23 23 23 24 24 LCS_GDT K 149 K 149 14 16 20 11 13 14 14 14 14 15 16 16 17 17 18 20 21 22 23 23 23 24 24 LCS_GDT V 150 V 150 14 16 20 11 13 14 14 14 14 15 16 16 17 17 18 20 21 22 23 23 23 24 24 LCS_GDT A 151 A 151 14 16 20 11 13 14 14 14 14 15 16 16 17 17 18 20 21 22 23 23 23 24 24 LCS_GDT E 152 E 152 14 16 20 4 13 14 14 14 14 15 16 16 17 17 18 20 21 22 23 23 23 24 24 LCS_GDT T 153 T 153 14 16 20 4 9 14 14 14 14 15 16 16 17 17 18 20 21 22 23 23 23 24 24 LCS_GDT E 154 E 154 6 9 20 4 5 7 8 9 10 11 14 15 17 17 18 20 21 22 23 23 23 24 24 LCS_GDT K 155 K 155 6 9 20 4 5 7 8 9 10 11 12 13 15 16 18 20 21 22 23 23 23 24 24 LCS_GDT E 156 E 156 6 9 20 4 5 6 8 9 10 11 12 13 15 16 18 20 21 22 23 23 23 24 24 LCS_GDT Q 157 Q 157 6 9 20 4 5 7 8 9 10 11 12 13 15 16 18 20 21 22 23 23 23 24 24 LCS_GDT W 158 W 158 6 9 20 4 4 7 8 9 10 11 12 13 15 16 18 20 21 22 23 23 23 24 24 LCS_GDT I 159 I 159 3 9 20 4 4 6 7 9 10 11 12 13 15 16 18 20 21 22 23 23 23 24 24 LCS_GDT A 160 A 160 4 9 20 3 4 7 8 9 10 11 12 13 14 16 18 20 21 22 23 23 23 24 24 LCS_GDT Y 161 Y 161 4 5 20 3 4 4 4 5 9 11 12 13 14 15 17 20 21 22 23 23 23 24 24 LCS_GDT P 162 P 162 4 5 20 3 4 4 4 5 6 11 12 13 14 14 17 19 21 22 23 23 23 23 24 LCS_GDT S 163 S 163 4 5 18 3 4 4 4 4 5 6 7 9 10 10 10 11 16 17 18 22 22 23 24 LCS_AVERAGE LCS_A: 9.51 ( 6.52 8.68 13.33 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 13 14 14 14 14 15 16 16 17 17 18 20 21 22 23 23 23 24 24 GDT PERCENT_AT 7.43 8.78 9.46 9.46 9.46 9.46 10.14 10.81 10.81 11.49 11.49 12.16 13.51 14.19 14.86 15.54 15.54 15.54 16.22 16.22 GDT RMS_LOCAL 0.25 0.46 0.66 0.66 0.66 0.66 1.63 1.96 1.96 2.60 2.60 4.17 4.56 4.74 4.97 5.20 5.20 5.20 5.68 5.57 GDT RMS_ALL_AT 17.08 17.06 16.98 16.98 16.98 16.98 17.55 17.72 17.72 17.42 17.42 6.68 6.59 6.54 6.44 6.38 6.38 6.38 6.62 6.39 # Checking swapping # possible swapping detected: E 139 E 139 # possible swapping detected: E 152 E 152 # possible swapping detected: E 154 E 154 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA W 138 W 138 4.011 0 0.560 1.505 7.206 35.952 32.109 LGA E 139 E 139 4.131 0 0.550 1.178 9.814 47.143 24.074 LGA P 140 P 140 2.350 0 0.595 0.900 5.030 77.619 60.748 LGA A 141 A 141 1.199 0 0.105 0.099 1.466 83.690 83.238 LGA D 142 D 142 1.777 0 0.085 0.966 4.301 75.000 61.905 LGA F 143 F 143 1.919 0 0.084 0.566 3.364 77.143 63.160 LGA E 144 E 144 1.017 0 0.067 0.245 1.284 85.952 87.460 LGA A 145 A 145 0.363 0 0.040 0.066 0.882 97.619 96.190 LGA M 146 M 146 0.874 0 0.051 1.257 3.461 90.476 78.988 LGA I 147 I 147 1.384 0 0.078 0.647 4.764 83.690 69.107 LGA K 148 K 148 1.147 0 0.189 0.765 2.440 79.286 77.778 LGA K 149 K 149 0.589 0 0.051 0.760 3.758 92.857 74.392 LGA V 150 V 150 0.703 0 0.067 0.081 1.788 88.333 84.150 LGA A 151 A 151 1.659 0 0.159 0.154 2.133 72.976 72.952 LGA E 152 E 152 1.851 0 0.101 1.155 6.979 72.976 52.804 LGA T 153 T 153 1.429 0 0.307 1.208 5.616 60.833 49.320 LGA E 154 E 154 8.100 0 0.117 0.806 13.362 8.214 3.757 LGA K 155 K 155 14.427 0 0.118 0.705 18.106 0.000 0.000 LGA E 156 E 156 17.162 0 0.096 0.233 21.306 0.000 0.000 LGA Q 157 Q 157 22.455 0 0.184 0.753 25.750 0.000 0.000 LGA W 158 W 158 25.751 0 0.636 1.274 30.567 0.000 0.000 LGA I 159 I 159 29.841 0 0.571 0.586 31.556 0.000 0.000 LGA A 160 A 160 32.944 0 0.612 0.598 33.752 0.000 0.000 LGA Y 161 Y 161 32.923 0 0.113 1.379 36.599 0.000 0.000 LGA P 162 P 162 38.751 0 0.086 0.481 39.447 0.000 0.000 LGA S 163 S 163 42.541 0 0.134 0.788 45.501 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 26 104 104 100.00 218 218 100.00 148 SUMMARY(RMSD_GDC): 6.290 6.003 7.134 8.309 7.244 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 26 148 4.0 16 1.96 11.149 10.287 0.778 LGA_LOCAL RMSD: 1.955 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.724 Number of assigned atoms: 26 Std_ASGN_ATOMS RMSD: 6.290 Standard rmsd on all 26 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.599145 * X + -0.696187 * Y + -0.395411 * Z + 53.977982 Y_new = 0.283070 * X + -0.277777 * Y + 0.917993 * Z + 89.985542 Z_new = -0.748930 * X + -0.661940 * Y + 0.030641 * Z + 94.931206 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.441371 0.846447 -1.524539 [DEG: 25.2887 48.4978 -87.3497 ] ZXZ: -2.734875 1.540150 -2.294615 [DEG: -156.6968 88.2441 -131.4718 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0578TS117_1_2-D1 REMARK 2: T0578-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0578TS117_1_2-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 26 148 4.0 16 1.96 10.287 6.29 REMARK ---------------------------------------------------------- MOLECULE T0578TS117_1_2-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 2 REMARK PFRMAT TS REMARK TARGET T0578 REMARK PARENT N/A ATOM 116 N TRP 138 60.165 74.440 85.880 1.00 0.00 N ATOM 117 CA TRP 138 60.541 75.379 84.854 1.00 0.00 C ATOM 118 C TRP 138 61.960 75.763 85.177 1.00 0.00 C ATOM 119 O TRP 138 62.758 76.062 84.293 1.00 0.00 O ATOM 120 CB TRP 138 59.647 76.649 84.832 1.00 0.00 C ATOM 121 CG TRP 138 59.993 77.702 83.800 1.00 0.00 C ATOM 122 CD2 TRP 138 60.842 78.837 84.044 1.00 0.00 C ATOM 123 CD1 TRP 138 59.617 77.785 82.492 1.00 0.00 C ATOM 124 CE2 TRP 138 60.974 79.519 82.843 1.00 0.00 C ATOM 125 NE1 TRP 138 60.275 78.822 81.882 1.00 0.00 N ATOM 126 CE3 TRP 138 61.348 79.358 85.198 1.00 0.00 C ATOM 127 CZ3 TRP 138 62.310 80.350 85.082 1.00 0.00 C ATOM 128 CH2 TRP 138 62.587 80.874 83.826 1.00 0.00 H ATOM 129 CZ2 TRP 138 61.750 80.630 82.767 1.00 0.00 C ATOM 130 N GLU 139 62.321 75.758 86.470 1.00 0.00 N ATOM 131 CA GLU 139 63.596 76.251 86.893 1.00 0.00 C ATOM 132 C GLU 139 64.704 75.215 87.038 1.00 0.00 C ATOM 133 O GLU 139 65.799 75.717 87.279 1.00 0.00 O ATOM 134 CB GLU 139 63.483 76.985 88.260 1.00 0.00 C ATOM 135 CG GLU 139 62.560 78.204 88.187 1.00 0.00 C ATOM 136 CD GLU 139 62.465 78.936 89.516 1.00 0.00 C ATOM 137 OE1 GLU 139 62.977 78.418 90.544 1.00 0.00 O ATOM 138 OE2 GLU 139 61.853 80.037 89.517 1.00 0.00 O ATOM 139 N PRO 140 64.669 73.876 86.997 1.00 0.00 N ATOM 140 CA PRO 140 65.826 73.097 87.380 1.00 0.00 C ATOM 141 C PRO 140 66.638 72.848 86.141 1.00 0.00 C ATOM 142 O PRO 140 66.148 72.949 85.016 1.00 0.00 O ATOM 143 CB PRO 140 65.229 71.725 87.768 1.00 0.00 C ATOM 144 CG PRO 140 63.966 71.562 86.867 1.00 0.00 C ATOM 145 CD PRO 140 63.619 73.018 86.452 1.00 0.00 C ATOM 146 N ALA 141 67.903 72.465 86.363 1.00 0.00 N ATOM 147 CA ALA 141 68.772 71.694 85.513 1.00 0.00 C ATOM 148 C ALA 141 68.239 70.993 84.310 1.00 0.00 C ATOM 149 O ALA 141 68.810 71.185 83.239 1.00 0.00 O ATOM 150 CB ALA 141 69.569 70.617 86.255 1.00 0.00 C ATOM 151 N ASP 142 67.199 70.144 84.436 1.00 0.00 N ATOM 152 CA ASP 142 66.957 69.211 83.353 1.00 0.00 C ATOM 153 C ASP 142 66.126 70.013 82.433 1.00 0.00 C ATOM 154 O ASP 142 66.194 69.853 81.228 1.00 0.00 O ATOM 155 CB ASP 142 66.136 67.946 83.637 1.00 0.00 C ATOM 156 CG ASP 142 65.964 67.136 82.344 1.00 0.00 C ATOM 157 OD1 ASP 142 66.999 66.650 81.807 1.00 0.00 O ATOM 158 OD2 ASP 142 64.788 66.952 81.920 1.00 0.00 O ATOM 159 N PHE 143 65.394 70.989 82.975 1.00 0.00 N ATOM 160 CA PHE 143 64.485 71.680 82.131 1.00 0.00 C ATOM 161 C PHE 143 65.340 72.628 81.385 1.00 0.00 C ATOM 162 O PHE 143 65.139 72.801 80.194 1.00 0.00 O ATOM 163 CB PHE 143 63.461 72.509 82.851 1.00 0.00 C ATOM 164 CG PHE 143 62.606 73.284 81.912 1.00 0.00 C ATOM 165 CD1 PHE 143 61.413 72.808 81.416 1.00 0.00 C ATOM 166 CD2 PHE 143 62.874 74.618 81.769 1.00 0.00 C ATOM 167 CE1 PHE 143 60.567 73.669 80.759 1.00 0.00 C ATOM 168 CE2 PHE 143 61.927 75.502 81.345 1.00 0.00 C ATOM 169 CZ PHE 143 60.775 75.031 80.764 1.00 0.00 C ATOM 170 N GLU 144 66.320 73.272 82.051 1.00 0.00 N ATOM 171 CA GLU 144 67.300 74.059 81.362 1.00 0.00 C ATOM 172 C GLU 144 67.884 73.284 80.211 1.00 0.00 C ATOM 173 O GLU 144 67.920 73.792 79.091 1.00 0.00 O ATOM 174 CB GLU 144 68.400 74.578 82.299 1.00 0.00 C ATOM 175 CG GLU 144 67.907 75.735 83.177 1.00 0.00 C ATOM 176 CD GLU 144 69.002 76.052 84.183 1.00 0.00 C ATOM 177 OE1 GLU 144 70.118 75.484 84.034 1.00 0.00 O ATOM 178 OE2 GLU 144 68.752 76.864 85.110 1.00 0.00 O ATOM 179 N ALA 145 68.294 72.022 80.441 1.00 0.00 N ATOM 180 CA ALA 145 68.872 71.183 79.425 1.00 0.00 C ATOM 181 C ALA 145 67.888 70.826 78.346 1.00 0.00 C ATOM 182 O ALA 145 68.295 70.628 77.201 1.00 0.00 O ATOM 183 CB ALA 145 69.412 69.845 79.954 1.00 0.00 C ATOM 184 N MET 146 66.588 70.689 78.681 1.00 0.00 N ATOM 185 CA MET 146 65.522 70.539 77.737 1.00 0.00 C ATOM 186 C MET 146 65.489 71.641 76.754 1.00 0.00 C ATOM 187 O MET 146 65.287 71.375 75.575 1.00 0.00 O ATOM 188 CB MET 146 64.080 70.459 78.314 1.00 0.00 C ATOM 189 CG MET 146 63.779 69.179 79.100 1.00 0.00 C ATOM 190 SD MET 146 62.313 69.228 80.169 1.00 0.00 S ATOM 191 CE MET 146 61.139 69.070 78.796 1.00 0.00 C ATOM 192 N ILE 147 65.611 72.896 77.196 1.00 0.00 N ATOM 193 CA ILE 147 65.197 73.963 76.342 1.00 0.00 C ATOM 194 C ILE 147 66.412 74.232 75.506 1.00 0.00 C ATOM 195 O ILE 147 66.297 74.479 74.308 1.00 0.00 O ATOM 196 CB ILE 147 64.660 75.154 77.105 1.00 0.00 C ATOM 197 CG1 ILE 147 63.497 74.739 78.048 1.00 0.00 C ATOM 198 CG2 ILE 147 64.204 76.260 76.134 1.00 0.00 C ATOM 199 CD1 ILE 147 62.314 74.007 77.395 1.00 0.00 C ATOM 200 N LYS 148 67.597 74.101 76.137 1.00 0.00 N ATOM 201 CA LYS 148 68.893 74.025 75.524 1.00 0.00 C ATOM 202 C LYS 148 68.848 73.196 74.282 1.00 0.00 C ATOM 203 O LYS 148 68.904 73.776 73.210 1.00 0.00 O ATOM 204 CB LYS 148 69.929 73.465 76.504 1.00 0.00 C ATOM 205 CG LYS 148 71.356 73.380 76.008 1.00 0.00 C ATOM 206 CD LYS 148 72.264 72.950 77.145 1.00 0.00 C ATOM 207 CE LYS 148 73.714 72.819 76.702 1.00 0.00 C ATOM 208 NZ LYS 148 74.575 72.579 77.874 1.00 0.00 N ATOM 209 N LYS 149 68.705 71.857 74.390 1.00 0.00 N ATOM 210 CA LYS 149 68.617 70.897 73.308 1.00 0.00 C ATOM 211 C LYS 149 67.847 71.403 72.123 1.00 0.00 C ATOM 212 O LYS 149 68.264 71.208 70.981 1.00 0.00 O ATOM 213 CB LYS 149 67.987 69.566 73.820 1.00 0.00 C ATOM 214 CG LYS 149 66.656 69.019 73.235 1.00 0.00 C ATOM 215 CD LYS 149 65.725 68.476 74.315 1.00 0.00 C ATOM 216 CE LYS 149 64.285 68.139 73.928 1.00 0.00 C ATOM 217 NZ LYS 149 63.671 67.248 74.939 1.00 0.00 N ATOM 218 N VAL 150 66.704 72.071 72.384 1.00 0.00 N ATOM 219 CA VAL 150 65.669 72.282 71.415 1.00 0.00 C ATOM 220 C VAL 150 66.160 73.449 70.620 1.00 0.00 C ATOM 221 O VAL 150 65.931 73.543 69.415 1.00 0.00 O ATOM 222 CB VAL 150 64.336 72.653 72.049 1.00 0.00 C ATOM 223 CG1 VAL 150 63.328 73.105 70.982 1.00 0.00 C ATOM 224 CG2 VAL 150 63.763 71.478 72.844 1.00 0.00 C ATOM 225 N ALA 151 66.886 74.345 71.303 1.00 0.00 N ATOM 226 CA ALA 151 67.365 75.563 70.739 1.00 0.00 C ATOM 227 C ALA 151 68.527 75.174 69.895 1.00 0.00 C ATOM 228 O ALA 151 68.786 75.800 68.869 1.00 0.00 O ATOM 229 CB ALA 151 67.926 76.540 71.790 1.00 0.00 C ATOM 230 N GLU 152 69.256 74.132 70.345 1.00 0.00 N ATOM 231 CA GLU 152 70.642 73.961 70.061 1.00 0.00 C ATOM 232 C GLU 152 70.747 72.890 69.032 1.00 0.00 C ATOM 233 O GLU 152 71.858 72.499 68.699 1.00 0.00 O ATOM 234 CB GLU 152 71.481 73.434 71.258 1.00 0.00 C ATOM 235 CG GLU 152 71.830 74.433 72.367 1.00 0.00 C ATOM 236 CD GLU 152 72.613 75.597 71.805 1.00 0.00 C ATOM 237 OE1 GLU 152 73.680 75.384 71.171 1.00 0.00 O ATOM 238 OE2 GLU 152 72.150 76.743 72.039 1.00 0.00 O ATOM 239 N THR 153 69.601 72.367 68.529 1.00 0.00 N ATOM 240 CA THR 153 69.451 71.683 67.271 1.00 0.00 C ATOM 241 C THR 153 69.928 70.260 67.462 1.00 0.00 C ATOM 242 O THR 153 70.308 69.586 66.503 1.00 0.00 O ATOM 243 CB THR 153 70.014 72.355 66.010 1.00 0.00 C ATOM 244 OG1 THR 153 71.411 72.617 66.033 1.00 0.00 O ATOM 245 CG2 THR 153 69.265 73.682 65.782 1.00 0.00 C ATOM 246 N GLU 154 69.876 69.751 68.711 1.00 0.00 N ATOM 247 CA GLU 154 70.707 68.659 69.126 1.00 0.00 C ATOM 248 C GLU 154 69.769 67.759 69.875 1.00 0.00 C ATOM 249 O GLU 154 68.554 67.956 69.852 1.00 0.00 O ATOM 250 CB GLU 154 71.914 69.060 70.016 1.00 0.00 C ATOM 251 CG GLU 154 73.140 69.504 69.213 1.00 0.00 C ATOM 252 CD GLU 154 74.242 69.861 70.202 1.00 0.00 C ATOM 253 OE1 GLU 154 74.159 69.374 71.363 1.00 0.00 O ATOM 254 OE2 GLU 154 75.199 70.577 69.808 1.00 0.00 O ATOM 255 N LYS 155 70.338 66.760 70.576 1.00 0.00 N ATOM 256 CA LYS 155 69.599 65.732 71.252 1.00 0.00 C ATOM 257 C LYS 155 69.763 66.105 72.694 1.00 0.00 C ATOM 258 O LYS 155 70.786 66.686 73.057 1.00 0.00 O ATOM 259 CB LYS 155 70.201 64.319 71.110 1.00 0.00 C ATOM 260 CG LYS 155 69.912 63.670 69.753 1.00 0.00 C ATOM 261 CD LYS 155 70.636 62.338 69.546 1.00 0.00 C ATOM 262 CE LYS 155 70.262 61.677 68.214 1.00 0.00 C ATOM 263 NZ LYS 155 70.931 60.364 68.055 1.00 0.00 N ATOM 264 N GLU 156 68.786 65.714 73.544 1.00 0.00 N ATOM 265 CA GLU 156 68.846 66.069 74.940 1.00 0.00 C ATOM 266 C GLU 156 69.651 65.007 75.555 1.00 0.00 C ATOM 267 O GLU 156 69.582 63.846 75.151 1.00 0.00 O ATOM 268 CB GLU 156 67.602 65.899 75.830 1.00 0.00 C ATOM 269 CG GLU 156 67.591 66.943 76.954 1.00 0.00 C ATOM 270 CD GLU 156 66.254 66.974 77.618 1.00 0.00 C ATOM 271 OE1 GLU 156 65.232 66.569 77.005 1.00 0.00 O ATOM 272 OE2 GLU 156 66.249 67.449 78.769 1.00 0.00 O ATOM 273 N GLN 157 70.336 65.381 76.630 1.00 0.00 N ATOM 274 CA GLN 157 71.271 64.519 77.250 1.00 0.00 C ATOM 275 C GLN 157 70.741 64.537 78.641 1.00 0.00 C ATOM 276 O GLN 157 71.104 65.417 79.414 1.00 0.00 O ATOM 277 CB GLN 157 72.711 65.057 77.191 1.00 0.00 C ATOM 278 CG GLN 157 73.275 65.090 75.766 1.00 0.00 C ATOM 279 CD GLN 157 74.726 65.559 75.828 1.00 0.00 C ATOM 280 OE1 GLN 157 75.311 65.672 76.905 1.00 0.00 O ATOM 281 NE2 GLN 157 75.326 65.843 74.640 1.00 0.00 N ATOM 282 N TRP 158 69.822 63.589 78.959 1.00 0.00 N ATOM 283 CA TRP 158 69.192 63.481 80.254 1.00 0.00 C ATOM 284 C TRP 158 70.004 62.596 81.164 1.00 0.00 C ATOM 285 O TRP 158 69.611 62.332 82.295 1.00 0.00 O ATOM 286 CB TRP 158 67.759 62.898 80.166 1.00 0.00 C ATOM 287 CG TRP 158 67.690 61.606 79.376 1.00 0.00 C ATOM 288 CD2 TRP 158 67.716 60.294 79.956 1.00 0.00 C ATOM 289 CD1 TRP 158 67.646 61.422 78.026 1.00 0.00 C ATOM 290 CE2 TRP 158 67.821 59.380 78.909 1.00 0.00 C ATOM 291 NE1 TRP 158 67.901 60.098 77.733 1.00 0.00 N ATOM 292 CE3 TRP 158 67.720 59.893 81.255 1.00 0.00 C ATOM 293 CZ3 TRP 158 67.701 58.542 81.497 1.00 0.00 C ATOM 294 CH2 TRP 158 67.701 57.627 80.459 1.00 0.00 H ATOM 295 CZ2 TRP 158 67.788 58.029 79.139 1.00 0.00 C ATOM 296 N ILE 159 71.162 62.126 80.665 1.00 0.00 N ATOM 297 CA ILE 159 72.368 61.723 81.353 1.00 0.00 C ATOM 298 C ILE 159 72.394 61.932 82.847 1.00 0.00 C ATOM 299 O ILE 159 72.492 60.945 83.575 1.00 0.00 O ATOM 300 CB ILE 159 73.599 62.296 80.680 1.00 0.00 C ATOM 301 CG1 ILE 159 73.606 61.794 79.213 1.00 0.00 C ATOM 302 CG2 ILE 159 74.877 61.944 81.477 1.00 0.00 C ATOM 303 CD1 ILE 159 74.837 62.206 78.409 1.00 0.00 C ATOM 304 N ALA 160 72.312 63.173 83.364 1.00 0.00 N ATOM 305 CA ALA 160 73.016 63.417 84.601 1.00 0.00 C ATOM 306 C ALA 160 71.931 63.596 85.629 1.00 0.00 C ATOM 307 O ALA 160 72.175 64.103 86.724 1.00 0.00 O ATOM 308 CB ALA 160 73.960 64.637 84.618 1.00 0.00 C ATOM 309 N TYR 161 70.705 63.151 85.287 1.00 0.00 N ATOM 310 CA TYR 161 69.455 63.566 85.853 1.00 0.00 C ATOM 311 C TYR 161 68.935 62.205 86.240 1.00 0.00 C ATOM 312 O TYR 161 68.799 61.400 85.320 1.00 0.00 O ATOM 313 CB TYR 161 68.535 64.208 84.778 1.00 0.00 C ATOM 314 CG TYR 161 67.185 64.512 85.318 1.00 0.00 C ATOM 315 CD1 TYR 161 67.051 65.545 86.211 1.00 0.00 C ATOM 316 CD2 TYR 161 66.117 63.668 85.092 1.00 0.00 C ATOM 317 CE1 TYR 161 65.867 65.789 86.857 1.00 0.00 C ATOM 318 CE2 TYR 161 64.932 63.911 85.735 1.00 0.00 C ATOM 319 CZ TYR 161 64.782 64.993 86.560 1.00 0.00 C ATOM 320 OH TYR 161 63.621 65.081 87.351 1.00 0.00 H ATOM 321 N PRO 162 68.701 61.817 87.489 1.00 0.00 N ATOM 322 CA PRO 162 68.394 60.425 87.813 1.00 0.00 C ATOM 323 C PRO 162 66.899 60.283 87.721 1.00 0.00 C ATOM 324 O PRO 162 66.201 61.286 87.856 1.00 0.00 O ATOM 325 CB PRO 162 68.752 60.299 89.311 1.00 0.00 C ATOM 326 CG PRO 162 68.623 61.745 89.896 1.00 0.00 C ATOM 327 CD PRO 162 68.855 62.681 88.675 1.00 0.00 C ATOM 328 N SER 163 66.356 59.058 87.559 1.00 0.00 N ATOM 329 CA SER 163 64.975 58.847 87.904 1.00 0.00 C ATOM 330 C SER 163 64.891 58.658 89.391 1.00 0.00 C ATOM 331 O SER 163 65.352 57.659 89.945 1.00 0.00 O ATOM 332 CB SER 163 64.306 57.690 87.135 1.00 0.00 C ATOM 333 OG SER 163 62.955 57.513 87.540 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 218 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 61.45 58.3 36 12.4 291 ARMSMC SECONDARY STRUCTURE . . 50.33 66.7 24 15.0 160 ARMSMC SURFACE . . . . . . . . 61.90 55.6 27 15.0 180 ARMSMC BURIED . . . . . . . . 60.08 66.7 9 8.1 111 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.58 46.2 13 10.7 122 ARMSSC1 RELIABLE SIDE CHAINS . 88.76 50.0 12 11.0 109 ARMSSC1 SECONDARY STRUCTURE . . 97.10 50.0 8 11.9 67 ARMSSC1 SURFACE . . . . . . . . 81.55 55.6 9 11.4 79 ARMSSC1 BURIED . . . . . . . . 110.86 25.0 4 9.3 43 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.20 44.4 9 10.0 90 ARMSSC2 RELIABLE SIDE CHAINS . 68.20 44.4 9 12.7 71 ARMSSC2 SECONDARY STRUCTURE . . 76.11 40.0 5 10.2 49 ARMSSC2 SURFACE . . . . . . . . 72.33 37.5 8 12.7 63 ARMSSC2 BURIED . . . . . . . . 3.78 100.0 1 3.7 27 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 16.89 100.0 3 10.3 29 ARMSSC3 RELIABLE SIDE CHAINS . 16.89 100.0 3 12.0 25 ARMSSC3 SECONDARY STRUCTURE . . 17.67 100.0 2 14.3 14 ARMSSC3 SURFACE . . . . . . . . 16.89 100.0 3 13.6 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 107.45 0.0 1 20.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 107.45 0.0 1 20.0 5 ARMSSC4 SECONDARY STRUCTURE . . 107.45 0.0 1 33.3 3 ARMSSC4 SURFACE . . . . . . . . 107.45 0.0 1 20.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.29 (Number of atoms: 26) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.29 26 17.6 148 CRMSCA CRN = ALL/NP . . . . . 0.2419 CRMSCA SECONDARY STRUCTURE . . 6.78 12 15.0 80 CRMSCA SURFACE . . . . . . . . 6.50 19 20.7 92 CRMSCA BURIED . . . . . . . . 5.68 7 12.5 56 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.34 130 17.7 733 CRMSMC SECONDARY STRUCTURE . . 6.73 60 15.2 396 CRMSMC SURFACE . . . . . . . . 6.59 95 20.7 458 CRMSMC BURIED . . . . . . . . 5.61 35 12.7 275 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.08 114 18.0 635 CRMSSC RELIABLE SIDE CHAINS . 8.10 110 20.3 541 CRMSSC SECONDARY STRUCTURE . . 9.92 43 12.7 339 CRMSSC SURFACE . . . . . . . . 8.12 74 18.5 400 CRMSSC BURIED . . . . . . . . 8.01 40 17.0 235 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.17 218 17.8 1227 CRMSALL SECONDARY STRUCTURE . . 8.17 91 13.8 659 CRMSALL SURFACE . . . . . . . . 7.22 150 19.5 768 CRMSALL BURIED . . . . . . . . 7.06 68 14.8 459 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.712 1.000 0.500 26 17.6 148 ERRCA SECONDARY STRUCTURE . . 6.270 1.000 0.500 12 15.0 80 ERRCA SURFACE . . . . . . . . 5.845 1.000 0.500 19 20.7 92 ERRCA BURIED . . . . . . . . 5.349 1.000 0.500 7 12.5 56 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.692 1.000 0.500 130 17.7 733 ERRMC SECONDARY STRUCTURE . . 6.104 1.000 0.500 60 15.2 396 ERRMC SURFACE . . . . . . . . 5.877 1.000 0.500 95 20.7 458 ERRMC BURIED . . . . . . . . 5.189 1.000 0.500 35 12.7 275 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.338 1.000 0.500 114 18.0 635 ERRSC RELIABLE SIDE CHAINS . 7.338 1.000 0.500 110 20.3 541 ERRSC SECONDARY STRUCTURE . . 9.226 1.000 0.500 43 12.7 339 ERRSC SURFACE . . . . . . . . 7.279 1.000 0.500 74 18.5 400 ERRSC BURIED . . . . . . . . 7.448 1.000 0.500 40 17.0 235 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.412 1.000 0.500 218 17.8 1227 ERRALL SECONDARY STRUCTURE . . 7.332 1.000 0.500 91 13.8 659 ERRALL SURFACE . . . . . . . . 6.396 1.000 0.500 150 19.5 768 ERRALL BURIED . . . . . . . . 6.447 1.000 0.500 68 14.8 459 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 5 14 23 26 148 DISTCA CA (P) 0.00 0.00 3.38 9.46 15.54 148 DISTCA CA (RMS) 0.00 0.00 2.60 3.83 5.30 DISTCA ALL (N) 0 7 30 91 185 218 1227 DISTALL ALL (P) 0.00 0.57 2.44 7.42 15.08 1227 DISTALL ALL (RMS) 0.00 1.71 2.39 3.69 5.80 DISTALL END of the results output