####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 62 ( 248), selected 62 , name T0576AL396_1-D1 # Molecule2: number of CA atoms 133 ( 1064), selected 62 , name T0576-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0576AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 41 - 61 4.85 21.38 LONGEST_CONTINUOUS_SEGMENT: 21 42 - 62 4.82 20.35 LCS_AVERAGE: 13.45 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 27 - 43 1.28 15.23 LCS_AVERAGE: 6.82 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 27 - 42 0.82 15.16 LCS_AVERAGE: 5.53 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 62 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 27 V 27 16 17 20 7 13 16 16 17 17 19 19 21 21 21 22 23 23 24 25 28 28 30 32 LCS_GDT T 28 T 28 16 17 20 7 14 16 16 17 17 19 19 21 21 21 22 23 23 24 26 28 28 30 32 LCS_GDT D 29 D 29 16 17 20 11 14 16 16 17 17 19 19 21 21 21 22 23 23 24 26 28 28 30 32 LCS_GDT R 30 R 30 16 17 20 8 14 16 16 17 17 19 19 21 21 21 22 23 23 24 26 28 29 30 32 LCS_GDT I 31 I 31 16 17 20 11 14 16 16 17 17 19 19 21 21 21 22 23 23 24 26 28 29 30 32 LCS_GDT G 32 G 32 16 17 20 11 14 16 16 17 17 19 19 21 21 21 22 23 23 24 26 28 29 30 32 LCS_GDT Q 33 Q 33 16 17 20 11 14 16 16 17 17 19 19 21 21 21 22 23 23 24 26 28 30 32 36 LCS_GDT M 34 M 34 16 17 20 11 14 16 16 17 17 19 19 21 21 21 22 23 23 24 28 30 33 35 36 LCS_GDT I 35 I 35 16 17 20 11 14 16 16 17 17 19 19 21 21 21 22 23 23 25 28 30 33 35 36 LCS_GDT L 36 L 36 16 17 20 11 14 16 16 17 17 19 19 21 21 21 22 23 25 27 30 32 33 35 36 LCS_GDT E 37 E 37 16 17 20 11 14 16 16 17 17 19 19 21 21 21 23 24 28 29 30 32 33 35 36 LCS_GDT M 38 M 38 16 17 20 11 14 16 16 17 17 19 19 21 21 21 23 24 28 29 30 32 33 35 36 LCS_GDT F 39 F 39 16 17 20 11 14 16 16 17 17 19 19 21 21 21 23 24 28 29 30 32 33 35 36 LCS_GDT R 40 R 40 16 17 20 8 14 16 16 17 17 19 19 21 21 21 23 24 28 29 30 32 33 35 36 LCS_GDT T 41 T 41 16 17 21 11 14 16 16 17 17 19 19 21 21 21 23 24 28 29 30 32 33 35 36 LCS_GDT G 42 G 42 16 17 21 3 6 16 16 17 17 19 19 21 21 21 22 24 28 29 30 32 33 35 36 LCS_GDT M 43 M 43 7 17 21 5 5 8 8 14 16 17 18 19 20 20 22 24 28 29 30 32 33 35 36 LCS_GDT C 44 C 44 7 9 21 5 6 8 8 9 10 11 12 18 20 20 23 24 28 29 30 32 33 35 36 LCS_GDT L 45 L 45 7 9 21 5 6 8 8 9 10 11 12 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT F 46 F 46 7 9 21 5 6 8 8 9 10 11 12 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT S 47 S 47 7 9 21 5 6 8 8 9 10 11 12 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT V 48 V 48 7 9 21 3 6 8 8 9 10 11 12 14 16 17 23 24 28 29 30 32 33 35 36 LCS_GDT R 49 R 49 7 9 21 3 6 8 8 9 10 11 11 14 16 17 23 24 28 29 30 32 33 35 36 LCS_GDT S 50 S 50 4 9 21 0 3 4 6 9 10 11 12 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT P 51 P 51 5 8 21 0 4 6 7 8 10 11 13 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT G 52 G 52 5 8 21 2 4 6 7 8 10 11 13 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT G 53 G 53 5 8 21 3 4 6 7 8 10 11 13 14 16 18 23 24 28 29 30 32 33 35 36 LCS_GDT V 54 V 54 5 8 21 3 4 6 7 8 10 11 13 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT A 55 A 55 5 8 21 3 4 6 7 8 10 11 13 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT E 56 E 56 5 8 21 3 4 6 7 8 8 11 15 18 20 20 22 24 28 29 30 32 33 35 36 LCS_GDT L 57 L 57 5 8 21 3 4 6 10 13 16 18 18 19 20 20 22 24 28 29 30 32 33 35 36 LCS_GDT Y 58 Y 58 5 8 21 3 4 7 14 17 17 19 19 21 21 21 22 23 23 25 28 29 32 33 34 LCS_GDT G 59 G 59 4 7 21 3 3 4 5 7 8 16 18 21 21 21 22 23 23 24 25 27 28 31 33 LCS_GDT G 60 G 60 4 6 21 3 3 4 5 6 9 9 9 10 14 16 20 21 21 23 25 27 28 30 33 LCS_GDT E 61 E 61 4 6 21 3 3 8 8 8 9 11 11 11 15 17 20 21 22 23 25 27 28 30 33 LCS_GDT A 62 A 62 4 6 21 3 4 5 7 8 9 19 19 21 21 21 22 23 25 28 29 31 33 35 36 LCS_GDT R 63 R 63 4 6 12 3 3 4 4 5 8 9 11 16 18 21 22 23 23 24 25 27 29 30 33 LCS_GDT K 64 K 64 4 6 12 3 3 4 4 6 7 8 10 12 15 16 17 23 23 24 25 25 29 30 34 LCS_GDT V 65 V 65 3 3 12 3 3 3 3 6 7 7 8 8 9 10 10 11 12 15 18 19 22 25 26 LCS_GDT E 66 E 66 4 5 15 3 4 4 4 5 10 10 11 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT I 67 I 67 4 5 15 3 4 4 5 5 10 10 11 12 15 19 23 24 28 29 30 32 33 35 36 LCS_GDT T 68 T 68 4 5 15 3 4 4 5 6 10 11 13 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT G 69 G 69 4 5 15 3 4 4 5 6 10 11 13 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT T 70 T 70 3 5 15 3 3 3 5 6 10 11 13 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT S 71 S 71 3 5 15 0 3 3 5 6 8 10 11 12 16 17 19 22 25 29 30 32 33 35 36 LCS_GDT L 72 L 72 3 5 15 0 4 4 5 6 10 11 13 14 16 19 23 24 28 29 30 32 33 35 36 LCS_GDT T 73 T 73 3 3 15 1 4 4 5 6 8 19 19 21 21 21 22 24 28 29 30 32 33 35 36 LCS_GDT I 74 I 74 3 3 15 1 4 4 4 4 5 9 10 21 21 21 22 23 23 24 29 32 33 35 36 LCS_GDT E 75 E 75 3 4 15 0 4 4 4 4 6 8 9 11 13 14 15 18 21 24 28 31 33 34 36 LCS_GDT R 76 R 76 4 5 15 4 4 4 6 6 7 9 9 10 11 14 18 21 25 28 30 32 33 35 36 LCS_GDT E 77 E 77 4 5 15 4 4 4 6 6 7 7 7 10 11 11 13 15 15 17 20 23 31 32 34 LCS_GDT D 78 D 78 4 5 15 4 4 4 6 6 7 7 8 10 11 12 13 15 20 20 22 23 24 26 28 LCS_GDT W 79 W 79 4 5 15 4 4 4 6 6 7 9 10 11 11 13 15 16 20 20 22 23 25 26 30 LCS_GDT H 80 H 80 4 5 15 3 3 4 6 6 7 9 9 11 11 13 15 16 20 20 23 23 25 28 30 LCS_GDT L 81 L 81 4 5 14 3 3 4 5 5 6 7 8 10 11 13 15 16 20 20 23 23 25 28 31 LCS_GDT H 82 H 82 4 5 14 3 3 4 5 5 6 7 8 10 18 19 20 21 22 23 24 25 26 30 31 LCS_GDT C 83 C 83 3 5 14 3 3 4 5 5 6 7 8 10 10 12 15 18 20 23 24 25 27 28 30 LCS_GDT K 84 K 84 3 5 14 3 3 4 4 5 6 7 8 11 15 15 22 23 23 24 26 28 28 30 32 LCS_GDT L 85 L 85 3 5 14 3 3 4 4 4 6 7 8 12 13 15 19 21 22 23 26 28 28 30 32 LCS_GDT E 86 E 86 3 5 14 3 4 4 4 5 6 7 9 12 13 15 19 21 22 23 26 28 28 30 32 LCS_GDT T 87 T 87 3 3 11 3 3 3 4 6 6 7 9 12 14 15 19 21 22 23 26 28 28 30 32 LCS_GDT V 88 V 88 3 3 11 3 3 3 3 4 6 6 8 11 13 14 15 18 20 20 22 24 25 27 30 LCS_AVERAGE LCS_A: 8.60 ( 5.53 6.82 13.45 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 14 16 16 17 17 19 19 21 21 21 23 24 28 29 30 32 33 35 36 GDT PERCENT_AT 8.27 10.53 12.03 12.03 12.78 12.78 14.29 14.29 15.79 15.79 15.79 17.29 18.05 21.05 21.80 22.56 24.06 24.81 26.32 27.07 GDT RMS_LOCAL 0.34 0.53 0.82 0.82 1.06 1.06 1.93 1.93 2.37 2.37 2.37 4.60 4.72 5.22 5.35 5.48 5.85 6.02 6.36 6.51 GDT RMS_ALL_AT 15.36 15.28 15.16 15.16 15.17 15.17 16.07 16.07 16.71 16.71 16.71 13.57 13.61 13.51 13.40 13.28 13.34 13.40 13.20 13.24 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 27 V 27 1.791 3 0.080 0.080 1.803 77.143 44.082 LGA T 28 T 28 1.690 3 0.046 0.046 1.744 77.143 44.082 LGA D 29 D 29 2.181 4 0.092 0.092 2.181 72.976 36.488 LGA R 30 R 30 1.939 7 0.037 0.037 1.939 77.143 28.052 LGA I 31 I 31 0.536 4 0.087 0.087 0.647 90.476 45.238 LGA G 32 G 32 1.880 0 0.032 0.032 2.064 72.976 72.976 LGA Q 33 Q 33 2.262 5 0.042 0.042 2.262 70.833 31.481 LGA M 34 M 34 1.059 4 0.020 0.020 1.059 85.952 42.976 LGA I 35 I 35 1.790 4 0.058 0.058 2.141 75.238 37.619 LGA L 36 L 36 2.150 4 0.046 0.046 2.150 75.119 37.560 LGA E 37 E 37 1.067 5 0.020 0.020 1.067 88.214 39.206 LGA M 38 M 38 1.418 4 0.113 0.113 1.932 81.548 40.774 LGA F 39 F 39 1.685 7 0.089 0.089 1.685 79.286 28.831 LGA R 40 R 40 1.001 7 0.079 0.079 1.065 90.714 32.987 LGA T 41 T 41 0.184 3 0.214 0.214 2.015 88.810 50.748 LGA G 42 G 42 1.314 0 0.164 0.164 3.027 71.667 71.667 LGA M 43 M 43 6.245 4 0.518 0.518 8.548 18.333 9.167 LGA C 44 C 44 9.544 2 0.083 0.083 10.788 2.024 1.349 LGA L 45 L 45 14.649 4 0.036 0.036 17.562 0.000 0.000 LGA F 46 F 46 17.925 7 0.049 0.049 19.942 0.000 0.000 LGA S 47 S 47 24.071 2 0.076 0.076 26.256 0.000 0.000 LGA V 48 V 48 27.834 3 0.020 0.020 30.051 0.000 0.000 LGA R 49 R 49 33.564 7 0.599 0.599 37.256 0.000 0.000 LGA S 50 S 50 35.140 2 0.690 0.690 35.908 0.000 0.000 LGA P 51 P 51 37.941 3 0.486 0.486 40.118 0.000 0.000 LGA G 52 G 52 36.441 0 0.680 0.680 36.441 0.000 0.000 LGA G 53 G 53 31.391 0 0.148 0.148 33.599 0.000 0.000 LGA V 54 V 54 25.660 3 0.027 0.027 27.315 0.000 0.000 LGA A 55 A 55 20.428 1 0.152 0.152 22.533 0.000 0.000 LGA E 56 E 56 14.160 5 0.026 0.026 16.177 0.000 0.000 LGA L 57 L 57 7.977 4 0.067 0.067 10.296 11.429 5.714 LGA Y 58 Y 58 1.825 8 0.568 0.568 4.089 66.310 22.103 LGA G 59 G 59 5.314 0 0.657 0.657 8.063 23.571 23.571 LGA G 60 G 60 8.947 0 0.053 0.053 11.445 4.167 4.167 LGA E 61 E 61 8.910 5 0.629 0.629 8.910 9.524 4.233 LGA A 62 A 62 4.006 1 0.089 0.089 5.862 27.857 22.286 LGA R 63 R 63 5.384 7 0.632 0.632 6.310 24.405 8.874 LGA K 64 K 64 9.194 5 0.091 0.091 12.321 2.143 0.952 LGA V 65 V 65 15.744 3 0.026 0.026 16.972 0.000 0.000 LGA E 66 E 66 9.791 5 0.012 0.012 12.190 0.476 0.212 LGA I 67 I 67 15.684 4 0.072 0.072 15.957 0.000 0.000 LGA T 68 T 68 15.703 3 0.604 0.604 16.766 0.000 0.000 LGA G 69 G 69 20.524 0 0.449 0.449 20.524 0.000 0.000 LGA T 70 T 70 17.814 3 0.570 0.570 18.708 0.000 0.000 LGA S 71 S 71 11.310 2 0.642 0.642 13.984 0.119 0.079 LGA L 72 L 72 8.163 4 0.664 0.664 9.429 14.762 7.381 LGA T 73 T 73 3.200 3 0.602 0.602 5.366 45.833 26.190 LGA I 74 I 74 5.671 4 0.617 0.617 7.148 22.976 11.488 LGA E 75 E 75 8.316 5 0.579 0.579 9.889 5.357 2.381 LGA R 76 R 76 9.847 7 0.590 0.590 12.755 0.833 0.303 LGA E 77 E 77 15.935 5 0.024 0.024 18.706 0.000 0.000 LGA D 78 D 78 19.218 4 0.354 0.354 20.633 0.000 0.000 LGA W 79 W 79 16.640 10 0.657 0.657 16.703 0.000 0.000 LGA H 80 H 80 14.032 6 0.548 0.548 17.183 0.000 0.000 LGA L 81 L 81 14.280 4 0.520 0.520 14.280 0.000 0.000 LGA H 82 H 82 14.481 6 0.013 0.013 15.302 0.000 0.000 LGA C 83 C 83 16.174 2 0.113 0.113 16.325 0.000 0.000 LGA K 84 K 84 17.157 5 0.289 0.289 17.574 0.000 0.000 LGA L 85 L 85 19.035 4 0.603 0.603 19.814 0.000 0.000 LGA E 86 E 86 21.420 5 0.068 0.068 22.888 0.000 0.000 LGA T 87 T 87 23.766 3 0.425 0.425 24.733 0.000 0.000 LGA V 88 V 88 27.284 3 0.584 0.584 28.969 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 62 248 248 100.00 485 248 51.13 133 SUMMARY(RMSD_GDC): 11.803 11.692 11.692 11.694 6.280 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 62 133 4.0 19 1.93 14.850 12.784 0.935 LGA_LOCAL RMSD: 1.931 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.070 Number of assigned atoms: 62 Std_ASGN_ATOMS RMSD: 11.803 Standard rmsd on all 62 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.218675 * X + 0.306945 * Y + -0.926265 * Z + 14.332204 Y_new = 0.468922 * X + -0.865505 * Y + -0.176106 * Z + 47.862446 Z_new = -0.855742 * X + -0.395836 * Y + -0.333197 * Z + 22.447395 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.134441 1.026983 -2.270485 [DEG: 64.9987 58.8418 -130.0892 ] ZXZ: -1.382914 1.910489 -2.004050 [DEG: -79.2351 109.4629 -114.8236 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0576AL396_1-D1 REMARK 2: T0576-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0576AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 62 133 4.0 19 1.93 12.784 11.80 REMARK ---------------------------------------------------------- MOLECULE T0576AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2js3_A ATOM 101 N VAL 27 6.502 51.063 11.113 1.00 0.00 N ATOM 102 CA VAL 27 6.179 50.327 12.336 1.00 0.00 C ATOM 103 C VAL 27 7.290 49.347 12.688 1.00 0.00 C ATOM 104 O VAL 27 7.677 49.212 13.845 1.00 0.00 O ATOM 105 N THR 28 7.803 48.666 11.671 1.00 0.00 N ATOM 106 CA THR 28 8.889 47.718 11.858 1.00 0.00 C ATOM 107 C THR 28 10.212 48.442 12.061 1.00 0.00 C ATOM 108 O THR 28 11.105 47.946 12.745 1.00 0.00 O ATOM 109 N ASP 29 10.328 49.623 11.466 1.00 0.00 N ATOM 110 CA ASP 29 11.546 50.412 11.565 1.00 0.00 C ATOM 111 C ASP 29 11.739 50.932 12.983 1.00 0.00 C ATOM 112 O ASP 29 12.768 50.676 13.605 1.00 0.00 O ATOM 113 N ARG 30 10.730 51.638 13.491 1.00 0.00 N ATOM 114 CA ARG 30 10.819 52.314 14.788 1.00 0.00 C ATOM 115 C ARG 30 11.138 51.339 15.913 1.00 0.00 C ATOM 116 O ARG 30 11.995 51.610 16.756 1.00 0.00 O ATOM 117 N ILE 31 10.471 50.193 15.911 1.00 0.00 N ATOM 118 CA ILE 31 10.703 49.184 16.936 1.00 0.00 C ATOM 119 C ILE 31 12.099 48.569 16.790 1.00 0.00 C ATOM 120 O ILE 31 12.776 48.294 17.784 1.00 0.00 O ATOM 121 N GLY 32 12.536 48.382 15.548 1.00 0.00 N ATOM 122 CA GLY 32 13.850 47.803 15.280 1.00 0.00 C ATOM 123 C GLY 32 14.951 48.756 15.733 1.00 0.00 C ATOM 124 O GLY 32 16.009 48.315 16.178 1.00 0.00 O ATOM 125 N GLN 33 14.692 50.062 15.624 1.00 0.00 N ATOM 126 CA GLN 33 15.631 51.077 16.105 1.00 0.00 C ATOM 127 C GLN 33 15.905 50.866 17.590 1.00 0.00 C ATOM 128 O GLN 33 17.058 50.846 18.030 1.00 0.00 O ATOM 129 N MET 34 14.824 50.706 18.348 1.00 0.00 N ATOM 130 CA MET 34 14.907 50.463 19.781 1.00 0.00 C ATOM 131 C MET 34 15.684 49.183 20.057 1.00 0.00 C ATOM 132 O MET 34 16.643 49.180 20.829 1.00 0.00 O ATOM 133 N ILE 35 15.266 48.102 19.400 1.00 0.00 N ATOM 134 CA ILE 35 15.875 46.789 19.587 1.00 0.00 C ATOM 135 C ILE 35 17.372 46.818 19.299 1.00 0.00 C ATOM 136 O ILE 35 18.162 46.220 20.033 1.00 0.00 O ATOM 137 N LEU 36 17.761 47.526 18.247 1.00 0.00 N ATOM 138 CA LEU 36 19.162 47.616 17.870 1.00 0.00 C ATOM 139 C LEU 36 19.970 48.346 18.944 1.00 0.00 C ATOM 140 O LEU 36 21.036 47.887 19.362 1.00 0.00 O ATOM 141 N GLU 37 19.439 49.470 19.409 1.00 0.00 N ATOM 142 CA GLU 37 20.127 50.291 20.394 1.00 0.00 C ATOM 143 C GLU 37 20.218 49.583 21.744 1.00 0.00 C ATOM 144 O GLU 37 21.279 49.558 22.368 1.00 0.00 O ATOM 145 N MET 38 19.113 48.983 22.179 1.00 0.00 N ATOM 146 CA MET 38 19.053 48.349 23.487 1.00 0.00 C ATOM 147 C MET 38 19.988 47.147 23.578 1.00 0.00 C ATOM 148 O MET 38 20.375 46.737 24.672 1.00 0.00 O ATOM 149 N PHE 39 20.312 46.558 22.436 1.00 0.00 N ATOM 150 CA PHE 39 21.231 45.434 22.408 1.00 0.00 C ATOM 151 C PHE 39 22.668 45.933 22.491 1.00 0.00 C ATOM 152 O PHE 39 23.404 45.571 23.406 1.00 0.00 O ATOM 153 N ARG 40 23.043 46.793 21.550 1.00 0.00 N ATOM 154 CA ARG 40 24.425 47.229 21.393 1.00 0.00 C ATOM 155 C ARG 40 24.978 47.924 22.634 1.00 0.00 C ATOM 156 O ARG 40 26.156 47.775 22.963 1.00 0.00 O ATOM 157 N THR 41 24.140 48.680 23.321 1.00 0.00 N ATOM 158 CA THR 41 24.621 49.553 24.381 1.00 0.00 C ATOM 159 C THR 41 24.323 49.005 25.774 1.00 0.00 C ATOM 160 O THR 41 24.481 49.709 26.777 1.00 0.00 O ATOM 161 N GLY 42 23.920 47.751 25.845 1.00 0.00 N ATOM 162 CA GLY 42 23.578 47.143 27.125 1.00 0.00 C ATOM 163 C GLY 42 24.266 45.793 27.292 1.00 0.00 C ATOM 164 O GLY 42 23.691 44.854 27.846 1.00 0.00 O ATOM 165 N MET 43 25.494 45.707 26.806 1.00 0.00 N ATOM 166 CA MET 43 26.299 44.504 26.943 1.00 0.00 C ATOM 167 C MET 43 27.486 44.770 27.862 1.00 0.00 C ATOM 168 O MET 43 28.274 45.689 27.617 1.00 0.00 O ATOM 169 N CYS 44 27.609 43.984 28.916 1.00 0.00 N ATOM 170 CA CYS 44 28.720 44.136 29.836 1.00 0.00 C ATOM 171 C CYS 44 29.730 43.013 29.664 1.00 0.00 C ATOM 172 O CYS 44 29.383 41.832 29.661 1.00 0.00 O ATOM 173 N LEU 45 30.984 43.393 29.500 1.00 0.00 N ATOM 174 CA LEU 45 32.063 42.429 29.443 1.00 0.00 C ATOM 175 C LEU 45 32.483 42.040 30.853 1.00 0.00 C ATOM 176 O LEU 45 33.000 42.860 31.611 1.00 0.00 O ATOM 177 N PHE 46 32.229 40.797 31.213 1.00 0.00 N ATOM 178 CA PHE 46 32.543 40.323 32.550 1.00 0.00 C ATOM 179 C PHE 46 33.933 39.703 32.587 1.00 0.00 C ATOM 180 O PHE 46 34.272 38.851 31.760 1.00 0.00 O ATOM 181 N SER 47 34.753 40.161 33.519 1.00 0.00 N ATOM 182 CA SER 47 36.073 39.597 33.687 1.00 0.00 C ATOM 183 C SER 47 36.060 38.605 34.826 1.00 0.00 C ATOM 184 O SER 47 35.698 38.928 35.959 1.00 0.00 O ATOM 185 N VAL 48 36.464 37.403 34.508 1.00 0.00 N ATOM 186 CA VAL 48 36.413 36.298 35.445 1.00 0.00 C ATOM 187 C VAL 48 37.809 35.912 35.900 1.00 0.00 C ATOM 188 O VAL 48 38.721 35.770 35.087 1.00 0.00 O ATOM 189 N ARG 49 37.970 35.746 37.204 1.00 0.00 N ATOM 190 CA ARG 49 39.242 35.322 37.768 1.00 0.00 C ATOM 191 C ARG 49 39.372 33.807 37.669 1.00 0.00 C ATOM 192 O ARG 49 40.474 33.256 37.671 1.00 0.00 O ATOM 193 N SER 50 38.228 33.144 37.565 1.00 0.00 N ATOM 194 CA SER 50 38.185 31.695 37.404 1.00 0.00 C ATOM 195 C SER 50 38.148 31.332 35.926 1.00 0.00 C ATOM 196 O SER 50 38.072 30.159 35.557 1.00 0.00 O ATOM 197 N PRO 51 38.204 32.351 35.088 1.00 0.00 N ATOM 198 CA PRO 51 38.209 32.142 33.656 1.00 0.00 C ATOM 199 C PRO 51 38.936 33.248 32.925 1.00 0.00 C ATOM 200 O PRO 51 40.163 33.287 32.911 1.00 0.00 O ATOM 201 N GLY 52 38.177 34.149 32.324 1.00 0.00 N ATOM 202 CA GLY 52 38.757 35.267 31.618 1.00 0.00 C ATOM 203 C GLY 52 37.708 36.293 31.268 1.00 0.00 C ATOM 204 O GLY 52 36.658 36.353 31.907 1.00 0.00 O ATOM 205 N GLY 53 37.974 37.092 30.255 1.00 0.00 N ATOM 206 CA GLY 53 37.031 38.112 29.819 1.00 0.00 C ATOM 207 C GLY 53 35.994 37.511 28.880 1.00 0.00 C ATOM 208 O GLY 53 36.339 36.920 27.861 1.00 0.00 O ATOM 209 N VAL 54 34.726 37.648 29.233 1.00 0.00 N ATOM 210 CA VAL 54 33.654 37.096 28.420 1.00 0.00 C ATOM 211 C VAL 54 32.688 38.184 27.978 1.00 0.00 C ATOM 212 O VAL 54 32.407 39.125 28.724 1.00 0.00 O ATOM 213 N ALA 55 32.189 38.053 26.760 1.00 0.00 N ATOM 214 CA ALA 55 31.202 38.982 26.228 1.00 0.00 C ATOM 215 C ALA 55 29.809 38.415 26.464 1.00 0.00 C ATOM 216 O ALA 55 29.408 37.427 25.842 1.00 0.00 O ATOM 217 N GLU 56 29.082 39.033 27.380 1.00 0.00 N ATOM 218 CA GLU 56 27.784 38.532 27.788 1.00 0.00 C ATOM 219 C GLU 56 26.755 39.654 27.769 1.00 0.00 C ATOM 220 O GLU 56 26.976 40.721 28.337 1.00 0.00 O ATOM 221 N LEU 57 25.636 39.414 27.098 1.00 0.00 N ATOM 222 CA LEU 57 24.571 40.400 27.028 1.00 0.00 C ATOM 223 C LEU 57 23.833 40.496 28.362 1.00 0.00 C ATOM 224 O LEU 57 23.775 39.523 29.116 1.00 0.00 O ATOM 225 N TYR 58 23.269 41.673 28.615 1.00 0.00 N ATOM 226 CA TYR 58 22.600 42.013 29.875 1.00 0.00 C ATOM 227 C TYR 58 21.788 40.866 30.493 1.00 0.00 C ATOM 228 O TYR 58 22.021 40.488 31.640 1.00 0.00 O ATOM 229 N GLY 59 20.844 40.314 29.739 1.00 0.00 N ATOM 230 CA GLY 59 19.927 39.313 30.286 1.00 0.00 C ATOM 231 C GLY 59 20.437 37.889 30.077 1.00 0.00 C ATOM 232 O GLY 59 19.678 36.934 30.221 1.00 0.00 O ATOM 233 N GLY 60 21.719 37.753 29.738 1.00 0.00 N ATOM 234 CA GLY 60 22.347 36.442 29.533 1.00 0.00 C ATOM 235 C GLY 60 21.717 35.692 28.357 1.00 0.00 C ATOM 236 O GLY 60 21.990 34.509 28.145 1.00 0.00 O ATOM 237 N GLU 61 20.905 36.402 27.577 1.00 0.00 N ATOM 238 CA GLU 61 20.197 35.792 26.463 1.00 0.00 C ATOM 239 C GLU 61 21.098 35.511 25.281 1.00 0.00 C ATOM 240 O GLU 61 20.696 34.836 24.334 1.00 0.00 O ATOM 241 N ALA 62 22.310 36.039 25.341 1.00 0.00 N ATOM 242 CA ALA 62 23.295 35.829 24.296 1.00 0.00 C ATOM 243 C ALA 62 24.696 35.931 24.882 1.00 0.00 C ATOM 244 O ALA 62 24.986 36.847 25.659 1.00 0.00 O ATOM 245 N ARG 63 25.544 34.970 24.553 1.00 0.00 N ATOM 246 CA ARG 63 26.921 34.975 25.013 1.00 0.00 C ATOM 247 C ARG 63 27.861 34.600 23.873 1.00 0.00 C ATOM 248 O ARG 63 27.597 33.659 23.115 1.00 0.00 O ATOM 249 N LYS 64 28.946 35.346 23.740 1.00 0.00 N ATOM 250 CA LYS 64 29.899 35.131 22.663 1.00 0.00 C ATOM 251 C LYS 64 31.321 35.408 23.151 1.00 0.00 C ATOM 252 O LYS 64 31.530 36.299 23.971 1.00 0.00 O ATOM 253 N VAL 65 32.308 34.610 22.702 1.00 0.00 N ATOM 254 CA VAL 65 33.722 34.860 22.999 1.00 0.00 C ATOM 255 C VAL 65 34.117 36.313 22.738 1.00 0.00 C ATOM 256 O VAL 65 33.601 36.945 21.811 1.00 0.00 O ATOM 257 N GLU 66 20.744 31.641 21.678 1.00 0.00 N ATOM 258 CA GLU 66 19.709 32.424 22.324 1.00 0.00 C ATOM 259 C GLU 66 19.195 31.715 23.572 1.00 0.00 C ATOM 260 O GLU 66 18.885 30.522 23.535 1.00 0.00 O ATOM 261 N ILE 67 19.132 32.439 24.676 1.00 0.00 N ATOM 262 CA ILE 67 18.448 31.948 25.860 1.00 0.00 C ATOM 263 C ILE 67 16.948 32.048 25.630 1.00 0.00 C ATOM 264 O ILE 67 16.391 33.145 25.586 1.00 0.00 O ATOM 265 N THR 68 16.311 30.901 25.467 1.00 0.00 N ATOM 266 CA THR 68 14.935 30.831 24.983 1.00 0.00 C ATOM 267 C THR 68 13.944 31.457 25.966 1.00 0.00 C ATOM 268 O THR 68 12.925 32.015 25.560 1.00 0.00 O ATOM 269 N GLY 69 14.263 31.388 27.252 1.00 0.00 N ATOM 270 CA GLY 69 13.391 31.935 28.293 1.00 0.00 C ATOM 271 C GLY 69 13.525 33.455 28.392 1.00 0.00 C ATOM 272 O GLY 69 12.611 34.147 28.852 1.00 0.00 O ATOM 273 N THR 70 14.658 33.973 27.947 1.00 0.00 N ATOM 274 CA THR 70 14.939 35.396 28.050 1.00 0.00 C ATOM 275 C THR 70 14.310 36.163 26.887 1.00 0.00 C ATOM 276 O THR 70 14.328 35.698 25.747 1.00 0.00 O ATOM 277 N SER 71 13.756 37.360 27.163 1.00 0.00 N ATOM 278 CA SER 71 13.088 38.202 26.152 1.00 0.00 C ATOM 279 C SER 71 14.034 38.678 25.047 1.00 0.00 C ATOM 280 O SER 71 13.630 39.399 24.139 1.00 0.00 O ATOM 281 N LEU 72 15.294 38.269 25.134 1.00 0.00 N ATOM 282 CA LEU 72 16.283 38.597 24.117 1.00 0.00 C ATOM 283 C LEU 72 15.905 37.956 22.783 1.00 0.00 C ATOM 284 O LEU 72 16.209 38.489 21.716 1.00 0.00 O ATOM 285 N THR 73 15.231 36.811 22.861 1.00 0.00 N ATOM 286 CA THR 73 14.823 36.071 21.674 1.00 0.00 C ATOM 287 C THR 73 13.955 36.918 20.741 1.00 0.00 C ATOM 288 O THR 73 14.208 36.980 19.536 1.00 0.00 O ATOM 289 N ILE 74 12.959 37.597 21.301 1.00 0.00 N ATOM 290 CA ILE 74 12.045 38.397 20.496 1.00 0.00 C ATOM 291 C ILE 74 12.741 39.655 19.988 1.00 0.00 C ATOM 292 O ILE 74 12.518 40.090 18.862 1.00 0.00 O ATOM 293 N GLU 75 13.600 40.217 20.827 1.00 0.00 N ATOM 294 CA GLU 75 14.388 41.385 20.451 1.00 0.00 C ATOM 295 C GLU 75 15.213 41.086 19.205 1.00 0.00 C ATOM 296 O GLU 75 15.226 41.870 18.253 1.00 0.00 O ATOM 297 N ARG 76 15.879 39.932 19.210 1.00 0.00 N ATOM 298 CA ARG 76 16.656 39.486 18.061 1.00 0.00 C ATOM 299 C ARG 76 15.768 39.333 16.830 1.00 0.00 C ATOM 300 O ARG 76 16.126 39.780 15.743 1.00 0.00 O ATOM 301 N GLU 77 14.606 38.717 17.017 1.00 0.00 N ATOM 302 CA GLU 77 13.659 38.509 15.934 1.00 0.00 C ATOM 303 C GLU 77 13.245 39.833 15.292 1.00 0.00 C ATOM 304 O GLU 77 13.076 39.919 14.074 1.00 0.00 O ATOM 305 N ASP 78 13.099 40.861 16.119 1.00 0.00 N ATOM 306 CA ASP 78 12.669 42.171 15.647 1.00 0.00 C ATOM 307 C ASP 78 13.782 42.890 14.890 1.00 0.00 C ATOM 308 O ASP 78 13.576 43.367 13.777 1.00 0.00 O ATOM 309 N TRP 79 14.963 42.961 15.488 1.00 0.00 N ATOM 310 CA TRP 79 16.057 43.728 14.905 1.00 0.00 C ATOM 311 C TRP 79 16.718 42.999 13.737 1.00 0.00 C ATOM 312 O TRP 79 17.486 43.593 12.979 1.00 0.00 O ATOM 313 N HIS 80 16.424 41.715 13.593 1.00 0.00 N ATOM 314 CA HIS 80 16.962 40.940 12.488 1.00 0.00 C ATOM 315 C HIS 80 15.996 40.969 11.306 1.00 0.00 C ATOM 316 O HIS 80 16.344 41.462 10.230 1.00 0.00 O ATOM 317 N LEU 81 14.776 40.460 11.528 1.00 0.00 N ATOM 318 CA LEU 81 13.733 40.371 10.495 1.00 0.00 C ATOM 319 C LEU 81 14.252 39.718 9.209 1.00 0.00 C ATOM 320 O LEU 81 13.750 39.983 8.116 1.00 0.00 O ATOM 321 N HIS 82 15.232 38.833 9.356 1.00 0.00 N ATOM 322 CA HIS 82 15.845 38.165 8.221 1.00 0.00 C ATOM 323 C HIS 82 15.922 36.665 8.489 1.00 0.00 C ATOM 324 O HIS 82 16.298 36.253 9.587 1.00 0.00 O ATOM 325 N CYS 83 15.546 35.833 7.501 1.00 0.00 N ATOM 326 CA CYS 83 15.561 34.368 7.635 1.00 0.00 C ATOM 327 C CYS 83 16.939 33.821 8.010 1.00 0.00 C ATOM 328 O CYS 83 17.825 33.695 7.162 1.00 0.00 O ATOM 329 N LYS 84 17.112 33.509 9.287 1.00 0.00 N ATOM 330 CA LYS 84 18.366 32.979 9.801 1.00 0.00 C ATOM 331 C LYS 84 18.105 32.224 11.102 1.00 0.00 C ATOM 332 O LYS 84 17.200 32.594 11.850 1.00 0.00 O ATOM 333 N LEU 85 18.882 31.164 11.347 1.00 0.00 N ATOM 334 CA LEU 85 18.821 30.413 12.606 1.00 0.00 C ATOM 335 C LEU 85 17.483 29.689 12.774 1.00 0.00 C ATOM 336 O LEU 85 16.451 30.306 13.045 1.00 0.00 O ATOM 337 N GLU 86 17.497 28.370 12.616 1.00 0.00 N ATOM 338 CA GLU 86 16.279 27.593 12.795 1.00 0.00 C ATOM 339 C GLU 86 16.116 27.199 14.260 1.00 0.00 C ATOM 340 O GLU 86 14.997 27.122 14.759 1.00 0.00 O ATOM 341 N THR 87 17.251 26.971 14.928 1.00 0.00 N ATOM 342 CA THR 87 17.301 26.720 16.374 1.00 0.00 C ATOM 343 C THR 87 16.278 25.683 16.843 1.00 0.00 C ATOM 344 O THR 87 15.180 26.027 17.293 1.00 0.00 O ATOM 345 N VAL 88 16.648 24.416 16.740 1.00 0.00 N ATOM 346 CA VAL 88 15.784 23.333 17.189 1.00 0.00 C ATOM 347 C VAL 88 16.082 22.983 18.644 1.00 0.00 C ATOM 348 O VAL 88 15.137 22.961 19.457 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 248 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 78.16 50.0 122 46.2 264 ARMSMC SECONDARY STRUCTURE . . 68.99 58.1 86 53.1 162 ARMSMC SURFACE . . . . . . . . 79.25 44.3 79 48.2 164 ARMSMC BURIED . . . . . . . . 76.11 60.5 43 43.0 100 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 116 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 103 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 73 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 71 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 87 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 70 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 51 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 21 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.80 (Number of atoms: 62) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.80 62 46.6 133 CRMSCA CRN = ALL/NP . . . . . 0.1904 CRMSCA SECONDARY STRUCTURE . . 10.60 43 53.1 81 CRMSCA SURFACE . . . . . . . . 12.57 40 48.2 83 CRMSCA BURIED . . . . . . . . 10.25 22 44.0 50 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.70 248 37.8 656 CRMSMC SECONDARY STRUCTURE . . 10.51 172 42.7 403 CRMSMC SURFACE . . . . . . . . 12.49 160 39.2 408 CRMSMC BURIED . . . . . . . . 10.10 88 35.5 248 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 532 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 456 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 340 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 324 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 208 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.70 248 23.3 1064 CRMSALL SECONDARY STRUCTURE . . 10.51 172 25.9 664 CRMSALL SURFACE . . . . . . . . 12.49 160 24.4 656 CRMSALL BURIED . . . . . . . . 10.10 88 21.6 408 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.876 1.000 0.500 62 46.6 133 ERRCA SECONDARY STRUCTURE . . 9.668 1.000 0.500 43 53.1 81 ERRCA SURFACE . . . . . . . . 11.816 1.000 0.500 40 48.2 83 ERRCA BURIED . . . . . . . . 9.168 1.000 0.500 22 44.0 50 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.757 1.000 0.500 248 37.8 656 ERRMC SECONDARY STRUCTURE . . 9.571 1.000 0.500 172 42.7 403 ERRMC SURFACE . . . . . . . . 11.708 1.000 0.500 160 39.2 408 ERRMC BURIED . . . . . . . . 9.027 1.000 0.500 88 35.5 248 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 532 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 456 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 340 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 324 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 208 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.757 1.000 0.500 248 23.3 1064 ERRALL SECONDARY STRUCTURE . . 9.571 1.000 0.500 172 25.9 664 ERRALL SURFACE . . . . . . . . 11.708 1.000 0.500 160 24.4 656 ERRALL BURIED . . . . . . . . 9.027 1.000 0.500 88 21.6 408 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 2 8 25 62 133 DISTCA CA (P) 0.00 1.50 1.50 6.02 18.80 133 DISTCA CA (RMS) 0.00 1.63 1.63 3.54 6.59 DISTCA ALL (N) 0 4 13 35 101 248 1064 DISTALL ALL (P) 0.00 0.38 1.22 3.29 9.49 1064 DISTALL ALL (RMS) 0.00 1.44 2.29 3.56 6.42 DISTALL END of the results output